Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 257 of 316
Found at i:84978753 original size:26 final size:26
Alignment explanation
Indices: 84978724--84978797 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
84978714 AGAATTAGAT
* *
84978724 AAAATTTGAAATATTCAAAATTATTG
1 AAAATTTGAAATCTTCAAAATTATTC
* *
84978750 AAAATTTGAAATCTTGAAATTTATTC
1 AAAATTTGAAATCTTCAAAATTATTC
* *
84978776 TAAATTTGAAATCTTTAAAATT
1 AAAATTTGAAATCTTCAAAATT
84978798 TTAAATTATT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (26 bp):
AAAATTTGAAATCTTCAAAATTATTC
Found at i:84979656 original size:28 final size:29
Alignment explanation
Indices: 84979616--84979670 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
84979606 AATAAATTGT
*
84979616 ATTTTAATCAATATAA-ATATAAATAAACC
1 ATTTAAATCAATA-AATATATAAATAAACC
*
84979645 ATTTAAAT-AATAAATATATACATAAA
1 ATTTAAATCAATAAATATATAAATAAA
84979671 ATACTTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (29 bp):
ATTTAAATCAATAAATATATAAATAAACC
Found at i:84979894 original size:114 final size:116
Alignment explanation
Indices: 84979675--84979899 Score: 255
Period size: 114 Copynumber: 2.0 Consensus size: 116
84979665 CATAAAATAC
* * *
84979675 TTTTTGCGGCGTTTTTATAAGAAACGCCGCTAATACTAGACCTATTGTGGCGTTTTTATAAAAAC
1 TTTTTGCGGCGTTTTCATAAGAAACGCCGCAAATACTAGACCTATTGTGGCATTTTTATAAAAAC
** *** *
84979740 GCCGCTAATGTCACTAAGGTTTAAAACAAAATGATAGCGTCTTGCTATTTT
66 GCCGCTAATGAAACTAAGGGCCAAAACAAAACGATAGCGTCTTGCTATTTT
*
84979791 TTTTTGCGGCGTTTTCCA-AA-AAACGCCGCAAATACTCA-ACCT-TTAGTGGCATTTTT-TGAA
1 TTTTTGCGGCGTTTT-CATAAGAAACGCCGCAAATACT-AGACCTATT-GTGGCATTTTTATAAA
* **
84979851 AACGCCGCTAATGAAACTAAGGGCCGAAAGGAAACGACT-GCGTCTTGCT
63 AACGCCGCTAATGAAACTAAGGGCCAAAACAAAACGA-TAGCGTCTTGCT
84979900 GAAATTATTA
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
114 43 0.47
115 30 0.33
116 18 0.20
117 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (116 bp):
TTTTTGCGGCGTTTTCATAAGAAACGCCGCAAATACTAGACCTATTGTGGCATTTTTATAAAAAC
GCCGCTAATGAAACTAAGGGCCAAAACAAAACGATAGCGTCTTGCTATTTT
Found at i:84980239 original size:22 final size:22
Alignment explanation
Indices: 84980200--84980251 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
84980190 AACAAACTGA
* *
84980200 AACAGCACCATACAACCACCAT
1 AACACCACTATACAACCACCAT
* * *
84980222 ATCACCACTATACCACCACTAT
1 AACACCACTATACAACCACCAT
84980244 AACACCAC
1 AACACCAC
84980252 CGTCTCAGCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.42, C:0.42, G:0.02, T:0.13
Consensus pattern (22 bp):
AACACCACTATACAACCACCAT
Found at i:84989509 original size:17 final size:17
Alignment explanation
Indices: 84989487--84989519 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
84989477 AAAAAGAATA
84989487 AAATAATGTTAA-ATTTC
1 AAATAA-GTTAACATTTC
84989504 AAATAAGTTAACATTT
1 AAATAAGTTAACATTT
84989520 ATTGTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAAGTTAACATTTC
Found at i:84991925 original size:12 final size:12
Alignment explanation
Indices: 84991890--84991925 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
84991880 ATGCCATCTA
84991890 TCCACAACCAAT
1 TCCACAACCAAT
*
84991902 TCAACTAACCAAT
1 TCCAC-AACCAAT
84991915 TCCACAACCAA
1 TCCACAACCAA
84991926 AACATATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (12 bp):
TCCACAACCAAT
Found at i:84995398 original size:22 final size:21
Alignment explanation
Indices: 84995373--84995448 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 21
84995363 TACTTGTATC
84995373 TATAAATATATAAATAATTTTA
1 TATAAATA-ATAAATAATTTTA
84995395 TATAAATAATAAATATGATTTTA
1 TATAAATAATAAATA--ATTTTA
* *
84995418 TTTTAAGAAAAATAAAATAATTTTA
1 -TAT-A-AATAAT-AAATAATTTTA
84995443 TATAAA
1 TATAAA
84995449 GTATTTAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
21 7 0.16
22 10 0.22
23 7 0.16
24 4 0.09
25 7 0.16
26 5 0.11
27 5 0.11
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
TATAAATAATAAATAATTTTA
Found at i:84999252 original size:47 final size:47
Alignment explanation
Indices: 84999201--84999305 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
84999191 TAGTATTAAT
*
84999201 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
84999248 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
84999295 AATGTGATAAG
1 TATGTGATAAG
84999306 TCTCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:85001343 original size:38 final size:38
Alignment explanation
Indices: 85001255--85001345 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 38
85001245 GACTTGCTGA
* *
85001255 CTATATGTAGAGATTATGTCCGGCTAAAGACCCGATGG
1 CTATATATAGAGATTATGTCCGGATAAAGACCCGATGG
* * *
85001293 CTATGTACAGAGATTATGTCCGGATTAAGACCC-ACTGG
1 CTATATATAGAGATTATGTCCGGATAAAGACCCGA-TGG
85001331 CT-TCATATAGAGATT
1 CTAT-ATATAGAGATT
85001346 TCATCCGAGC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 2 0.05
38 42 0.95
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (38 bp):
CTATATATAGAGATTATGTCCGGATAAAGACCCGATGG
Found at i:85001432 original size:40 final size:40
Alignment explanation
Indices: 85001377--85001608 Score: 401
Period size: 40 Copynumber: 5.8 Consensus size: 40
85001367 ACGATGATCT
*
85001377 GGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTATATCC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
*
85001417 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATTC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
*
85001457 GGGCTAAATCTCGAAGGGCATTCGTGCCGGTGTTATATCC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
85001497 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
* * *
85001537 GGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTATATTC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
*
85001577 GGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
85001609 ATATGTATTC
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.26
Consensus pattern (40 bp):
GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
Found at i:85006054 original size:47 final size:47
Alignment explanation
Indices: 85006003--85006107 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
85005993 TAGTATTAAT
*
85006003 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
85006050 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
85006097 AATGTGATAAG
1 TATGTGATAAG
85006108 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:85009538 original size:20 final size:20
Alignment explanation
Indices: 85009513--85009558 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
85009503 TATTTGTATG
*
85009513 ATGATTAGAAACATATTTAC
1 ATGATTAGAAACATAATTAC
* **
85009533 ATGATTTGAATGATAATTAC
1 ATGATTAGAAACATAATTAC
85009553 ATGATT
1 ATGATT
85009559 TTTATATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (20 bp):
ATGATTAGAAACATAATTAC
Found at i:85022311 original size:27 final size:28
Alignment explanation
Indices: 85022281--85022334 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
85022271 TAAAATTCAT
*
85022281 ACTTTAATTA-TAAAATAATTAATTTTC
1 ACTTAAATTATTAAAATAATTAATTTTC
*
85022308 ACTTAAATTATTAACATAATTAATTTT
1 ACTTAAATTATTAAAATAATTAATTTT
85022335 AATTATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (28 bp):
ACTTAAATTATTAAAATAATTAATTTTC
Found at i:85024185 original size:30 final size:30
Alignment explanation
Indices: 85024145--85024202 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
85024135 AAGACCATTT
* *
85024145 CCACATGGGCTGAG-CACACGCCCGTGTGAG
1 CCACACGGGCT-AGCCACACGCCCATGTGAG
*
85024175 CCACACGGGCTAGCCACATGCCCATGTG
1 CCACACGGGCTAGCCACACGCCCATGTG
85024203 GCAGCTTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.14
Consensus pattern (30 bp):
CCACACGGGCTAGCCACACGCCCATGTGAG
Found at i:85034486 original size:44 final size:42
Alignment explanation
Indices: 85034342--85034506 Score: 160
Period size: 43 Copynumber: 3.8 Consensus size: 42
85034332 AAAGCTCATA
**
85034342 CAATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACATAAATC-AA-AT
* * *
85034385 CGATGCC-ACTGTCCCAGATAG-GGTCTTACAC-GAAATCAAAT
1 CAATGCCAAC-GTCCCAGA-CGTGGTCTTACACATAAATCAAAT
85034426 -ATGATGCCAACGTCCCAGACGTGGTCTTACACATAAATCATAAGT
1 CA--ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCA-AA-T
*
85034471 CAATGCCAACGTCCCAGATGTGGTCTTACACGATAA
1 CAATGCCAACGTCCCAGACGTGGTCTTACAC-ATAA
85034507 CACATATCAG
Statistics
Matches: 102, Mismatches: 8, Indels: 22
0.77 0.06 0.17
Matches are distributed among these distances:
41 3 0.03
42 27 0.26
43 35 0.34
44 31 0.30
45 5 0.05
46 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACATAAATCAAAT
Found at i:85034499 original size:86 final size:85
Alignment explanation
Indices: 85034344--85034503 Score: 227
Period size: 86 Copynumber: 1.9 Consensus size: 85
85034334 AGCTCATACA
** *
85034344 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCAAATATCAATGCCACTGTCCCAGATAGGGT
85034409 CTTACACGAAATCAAATATG
66 CTTACACGAAATCAAATATG
*
85034429 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCATAA-GTCAATGCCAAC-GTCCCAGAT-G
1 ATGCCAACGTCCCAGACGTGGTCTTACACAT-AATCA-AATATCAATGCC-ACTGTCCCAGATAG
85034491 TGGTCTTACACGA
63 -GGTCTTACACGA
85034504 TAACACATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
85 30 0.45
86 33 0.49
87 4 0.06
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAATCAAATATCAATGCCACTGTCCCAGATAGGGT
CTTACACGAAATCAAATATG
Found at i:85036511 original size:39 final size:40
Alignment explanation
Indices: 85036410--85036634 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
85036400 TTGAATGATG
* * *
85036410 TCCGGGCTATGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
85036449 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
85036490 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
85036529 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
85036569 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
85036608 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
85036635 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 39 0.23
40 114 0.69
41 12 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:85036652 original size:80 final size:79
Alignment explanation
Indices: 85036463--85036657 Score: 227
Period size: 80 Copynumber: 2.5 Consensus size: 79
85036453 GGACTAAGAT
** * *
85036463 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTA
*
85036527 ATTCCGGGCTAAGTC
65 ATACCGGGCTAAGTC
** * *
85036542 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGATACTA
*
85036606 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAGTC
*
85036622 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
85036658 ATTTCGAAGG
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 43 0.42
80 59 0.57
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGTC
Found at i:85045377 original size:27 final size:26
Alignment explanation
Indices: 85045346--85045495 Score: 158
Period size: 27 Copynumber: 5.6 Consensus size: 26
85045336 TAAATTGTAC
85045346 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
85045373 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
85045399 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
85045427 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
85045454 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
85045481 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85045496 GACTCGATAT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.97
28 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:85045407 original size:54 final size:53
Alignment explanation
Indices: 85045346--85045495 Score: 176
Period size: 54 Copynumber: 2.8 Consensus size: 53
85045336 TAAATTGTAC
*
85045346 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGAATATGT
* ** ** *
85045399 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGATTTGATTATGT
1 A-GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGAATATGT
* *
85045454 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
85045496 GACTCGATAT
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
53 2 0.02
54 76 0.93
55 4 0.05
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATATGT
Found at i:85045486 original size:81 final size:81
Alignment explanation
Indices: 85045347--85045495 Score: 219
Period size: 81 Copynumber: 1.8 Consensus size: 81
85045337 AAATTGTACA
*
85045347 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
85045412 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * ** * *
85045428 GCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGAGTTGACTAT-ATAGCACTGAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
85045492 TGCG
65 TGCG
85045496 GACTCGATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 58 0.97
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85053525 original size:27 final size:26
Alignment explanation
Indices: 85053495--85053669 Score: 181
Period size: 27 Copynumber: 6.5 Consensus size: 26
85053485 AAATTGTACA
85053495 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
85053522 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
85053549 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
85053576 GCACTAAGTGTGCGATTTGACTATG-T
1 GCACTAAGTGTGCGA-TTGACTATGTT
* *
85053602 GCACTAAGTGTGCGATTTGATTATGTA
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
85053629 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
85053656 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
85053670 GACTCGATAT
Statistics
Matches: 130, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 25 0.19
27 103 0.79
28 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:85053637 original size:80 final size:81
Alignment explanation
Indices: 85053495--85053648 Score: 240
Period size: 80 Copynumber: 1.9 Consensus size: 81
85053485 AAATTGTACA
85053495 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
85053560 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
85053576 GCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGATTTGATTATG-TAGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
*
85053639 TGCGAGTTGA
65 TGCGAATTGA
85053649 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
79 1 0.01
80 42 0.63
81 24 0.36
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85053660 original size:80 final size:81
Alignment explanation
Indices: 85053491--85053669 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 81
85053481 GATTAAATTG
85053491 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
85053556 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
85053572 TGCGGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGATTTGATTATG-TAGCACTA
1 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTA
* **
85053635 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
85053652 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85053670 GACTCGATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 57 0.68
81 26 0.31
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85061152 original size:44 final size:44
Alignment explanation
Indices: 85061084--85061328 Score: 325
Period size: 44 Copynumber: 5.5 Consensus size: 44
85061074 TACGGTACTA
*
85061084 ATCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* *
85061128 ATCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
* *
85061172 ATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* *
85061217 ATCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
* * * *
85061261 ATTCGGGCCTTCGCGCCTAGCAGGCTATAATGCTGATGAAATGAT
1 A-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
*
85061306 ATCGGG-TTTTGAGCCTAGCAGGC
1 ATCGGGCCTTTGAGCCTAGCAGGC
85061329 AAAATACTGG
Statistics
Matches: 175, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
43 16 0.09
44 83 0.47
45 74 0.42
46 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (44 bp):
ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:85061235 original size:89 final size:89
Alignment explanation
Indices: 85061079--85061328 Score: 412
Period size: 89 Copynumber: 2.8 Consensus size: 89
85061069 TATCGTACGG
* * *
85061079 TACTAATCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAAATGATATCGGGCTTTTGAGCC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTTGAGCC
85061144 TAGCAGGCTATAATGCCGGTGAGA
66 TAGCAGGCTATAATGCCGGTGAGA
* * *
85061168 TACTATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAACC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTTGAGCC
85061233 TAGCAGGCTATAATGCCGGTGAGA
66 TAGCAGGCTATAATGCCGGTGAGA
* * *
85061257 TACTATTCGGGCCTTCGCGCCTAGCAGGCTATAATGCTGATGAAATGATATCGGG-TTTTGAGCC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTTGAGCC
85061321 TAGCAGGC
66 TAGCAGGC
85061329 AAAATACTGG
Statistics
Matches: 149, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
88 15 0.10
89 134 0.90
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (89 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTTGAGCC
TAGCAGGCTATAATGCCGGTGAGA
Found at i:85061534 original size:42 final size:42
Alignment explanation
Indices: 85061488--85061571 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
85061478 TTGTGAGTTT
*
85061488 GATTTGAATTGAATTATTAGTGTATAATGTGATACATATGTG
1 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
85061530 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
1 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
85061572 AATAAATGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (42 bp):
GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
Found at i:85063490 original size:17 final size:17
Alignment explanation
Indices: 85063465--85063517 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
85063455 CTTCTATTTA
*
85063465 TTTAATTATTTTTTATT
1 TTTATTTATTTTTTATT
85063482 TTTATTTA-TTTTTATT
1 TTTATTTATTTTTTATT
* *
85063498 CTTAATATATTATTTTATT
1 -TTTATTTATT-TTTTATT
85063517 T
1 T
85063518 CTTTATTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 8 0.27
17 13 0.43
18 2 0.07
19 7 0.23
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATTTATTTTTTATT
Found at i:85063495 original size:16 final size:16
Alignment explanation
Indices: 85063474--85063533 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
85063464 ATTTAATTAT
85063474 TTTTTATTTTTATTTA
1 TTTTTATTTTTATTTA
* *
85063490 TTTTTATTCTTAATATA
1 TTTTTATT-TTTATTTA
* *
85063507 TTATTT-TATTTCTTTA
1 TT-TTTATTTTTATTTA
*
85063523 TTCTTATTTTT
1 TTTTTATTTTT
85063534 CTTATTATTC
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
15 2 0.06
16 19 0.58
17 9 0.27
18 3 0.09
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTATTTTTATTTA
Found at i:85072396 original size:40 final size:40
Alignment explanation
Indices: 85072319--85072536 Score: 352
Period size: 40 Copynumber: 5.5 Consensus size: 40
85072309 AAACCAAGTA
* *
85072319 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
85072358 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85072398 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
85072438 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85072478 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
85072518 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
85072537 TTATCATCCG
Statistics
Matches: 169, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 15 0.09
40 154 0.91
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:85093919 original size:49 final size:47
Alignment explanation
Indices: 85093640--85094201 Score: 725
Period size: 47 Copynumber: 11.6 Consensus size: 47
85093630 CCCTTCGGGA
* * *
85093640 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
85093687 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
85093734 CTTATCTCATATATGCA-TGTTCACATTAATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
85093781 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
85093828 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
85093875 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
85093924 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
85093973 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * **
85094022 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
85094069 CTTATCACATATATACACTTTCACATTCATCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCAT---CA--CAT----T-GGCCATTCGGC
*
85094126 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
85094175 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
85094202 TATTCAAATA
Statistics
Matches: 479, Mismatches: 20, Indels: 32
0.90 0.04 0.06
Matches are distributed among these distances:
46 1 0.00
47 269 0.56
49 158 0.33
50 4 0.01
52 3 0.01
54 3 0.01
56 2 0.00
57 17 0.04
59 22 0.05
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:85094131 original size:57 final size:54
Alignment explanation
Indices: 85094040--85094202 Score: 228
Period size: 49 Copynumber: 3.1 Consensus size: 54
85094030 ATATATACAC
* *
85094040 TTTCACATTCATCACATCGGCTATTAAGCCTTATCACATATATACACTTTCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
*
85094094 TTCATCCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--A--TACAC-
1 TT--T-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
*
85094146 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
85094200 TTT
1 TTT
85094203 ATTCAAATAT
Statistics
Matches: 96, Mismatches: 5, Indels: 16
0.82 0.04 0.14
Matches are distributed among these distances:
49 39 0.41
50 1 0.01
51 1 0.01
52 2 0.02
53 8 0.08
54 5 0.05
55 1 0.01
56 1 0.01
57 38 0.40
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (54 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
Found at i:85094186 original size:106 final size:104
Alignment explanation
Indices: 85093996--85094201 Score: 367
Period size: 106 Copynumber: 2.0 Consensus size: 104
85093986 TATACACTTT
85093996 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
85094061 TATTAAGCCTTATCACATATATACACTTTCACATTCATC
66 CATTAAGCCTTATCACATATATACACTTTCACATTCATC
*
85094100 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
1 CACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCG
*
85094165 GCCATTAGGCCTTATCACATATATACACTTTCACATT
64 GCCATTAAGCCTTATCACATATATACACTTTCACATT
85094202 TATTCAAATA
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
104 34 0.35
106 63 0.65
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (104 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAAGCCTTATCACATATATACACTTTCACATTCATC
Found at i:85101212 original size:12 final size:12
Alignment explanation
Indices: 85101195--85101219 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85101185 CAAAAATGTA
85101195 AAAATCATCAAG
1 AAAATCATCAAG
85101207 AAAATCATCAAG
1 AAAATCATCAAG
85101219 A
1 A
85101220 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:85101536 original size:18 final size:17
Alignment explanation
Indices: 85101509--85101544 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
85101499 AAAATGAAAC
85101509 TTTTTCCTTTTATGCAA
1 TTTTTCCTTTTATGCAA
*
85101526 TTTTGTCCTTTTTTGCAA
1 TTTT-TCCTTTTATGCAA
85101544 T
1 T
85101545 CGGGGTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.14, C:0.17, G:0.08, T:0.61
Consensus pattern (17 bp):
TTTTTCCTTTTATGCAA
Found at i:85103219 original size:7 final size:6
Alignment explanation
Indices: 85103200--85103235 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
85103190 ACGTTAGTTC
*
85103200 TTTCTT TTTCTT TTTCCT TTTCTT TTTCTT CTTTCT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT -TTTCT
85103236 CCACTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTCTT
Found at i:85103921 original size:62 final size:62
Alignment explanation
Indices: 85103850--85103977 Score: 184
Period size: 62 Copynumber: 2.1 Consensus size: 62
85103840 GTGCAGGGTT
* *
85103850 CACACGACCAGGGACACGGGCATGTACCCAGGCCGTGTAACTCACTATTTGTGCTTAAAAAC
1 CACACGACCAGGGACACGGACATGTACCCAGGCCATGTAACTCACTATTTGTGCTTAAAAAC
** ** * *
85103912 CACACGACCAGGGACTTGGATGTGTGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAAC
1 CACACGACCAGGGACACGGACATGTACCCAGGCCATGTAACTCACTATTTGTGCTTAAAAAC
85103974 CACA
1 CACA
85103978 TGGCCAAGGC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (62 bp):
CACACGACCAGGGACACGGACATGTACCCAGGCCATGTAACTCACTATTTGTGCTTAAAAAC
Found at i:85105670 original size:10 final size:10
Alignment explanation
Indices: 85105655--85105684 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
85105645 AATAAAAAGG
85105655 CATATTATAA
1 CATATTATAA
85105665 CATATTATAA
1 CATATTATAA
*
85105675 CATATAATAA
1 CATATTATAA
85105685 AATCATTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (10 bp):
CATATTATAA
Found at i:85108393 original size:32 final size:32
Alignment explanation
Indices: 85108356--85108419 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
85108346 AATATTAAAT
85108356 TGAAGCATGATAGTTGATTTAATACTATATTA
1 TGAAGCATGATAGTTGATTTAATACTATATTA
85108388 TGAAGCATGATAGTTGATTTAATACTATATTA
1 TGAAGCATGATAGTTGATTTAATACTATATTA
85108420 GTTAATTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.41
Consensus pattern (32 bp):
TGAAGCATGATAGTTGATTTAATACTATATTA
Found at i:85117749 original size:55 final size:54
Alignment explanation
Indices: 85117620--85117811 Score: 233
Period size: 55 Copynumber: 3.6 Consensus size: 54
85117610 GTTACGGTTT
* * * *
85117620 AAGGATACCAGGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * *
85117674 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGCTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTCTATAAGGC
* * * * *
85117729 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
*
85117782 AAGGATACCATGTAAGACCATGTCAAGACA
1 AAGGATACCATGTAAGACCATGCCAAGACA
85117812 AGGAAATTGT
Statistics
Matches: 114, Mismatches: 23, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
53 33 0.29
54 39 0.34
55 42 0.37
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:85147452 original size:46 final size:46
Alignment explanation
Indices: 85147385--85147513 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
85147375 TGTAACCCTC
* * *
85147385 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85147431 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
85147477 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
85147514 TGCCCAAATA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85157251 original size:40 final size:40
Alignment explanation
Indices: 85157194--85157386 Score: 309
Period size: 40 Copynumber: 4.8 Consensus size: 40
85157184 GTATGATATT
*
85157194 TGGAATTGTATCCGGGCTTAAAGACCCGTAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
*
85157234 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
85157274 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
85157314 TGGAATTGTATCCGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGC
* *
85157354 TGGAATGGTATCCGGG-TTAAAGACCCGTAGGCT
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCT
85157387 TGCGTTGGAA
Statistics
Matches: 144, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.11
40 128 0.89
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:85163918 original size:47 final size:47
Alignment explanation
Indices: 85163864--85164010 Score: 177
Period size: 47 Copynumber: 3.1 Consensus size: 47
85163854 TTAGGATTGT
** *
85163864 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
85163911 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
** * * * * *
85163958 ATGTGATGAACATGAACATGCATATATGTGGTAAAGTCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
85164005 ATGTGA
1 ATGTGA
85164011 AATATGTATG
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
Found at i:85164325 original size:37 final size:37
Alignment explanation
Indices: 85164217--85164325 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
85164207 GGAAATATAT
*
85164217 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
85164254 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
85164291 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
85164326 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:85165261 original size:52 final size:52
Alignment explanation
Indices: 85165199--85165302 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
85165189 TTGCCGAAGT
85165199 ATGGTTTTTGGACTAATTTTAACAATGTGATAGTTAAATGAACTAACTTTGC
1 ATGGTTTTTGGACTAATTTTAACAATGTGATAGTTAAATGAACTAACTTTGC
*
85165251 ATGGTTTTTGGACTAATTTTAACAATGTGGTAGTTAAATGAACTAACTTTGC
1 ATGGTTTTTGGACTAATTTTAACAATGTGATAGTTAAATGAACTAACTTTGC
85165303 TATTACAGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (52 bp):
ATGGTTTTTGGACTAATTTTAACAATGTGATAGTTAAATGAACTAACTTTGC
Found at i:85165626 original size:42 final size:42
Alignment explanation
Indices: 85165574--85165716 Score: 164
Period size: 42 Copynumber: 3.4 Consensus size: 42
85165564 ATGAGTTTAT
*
85165574 GTGTAAGACCATATCTGGGATATGGCATC-ATTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATATC
* * * *
85165616 GTGTAGGACCATGTCTGGGACATGGCGTCGATATGAGA-ATC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* * **
85165657 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATATC
*
85165700 ATGTAAGACCATATCTG
1 GTGTAAGACCATATCTG
85165717 AGAAATGACA
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
41 19 0.23
42 47 0.57
43 17 0.20
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
Found at i:85165735 original size:84 final size:83
Alignment explanation
Indices: 85165574--85165727 Score: 184
Period size: 84 Copynumber: 1.8 Consensus size: 83
85165564 ATGAGTTTAT
* ** * * * * *
85165574 GTGTAAGACCATATCTGGGATATGGCATCATTATGAGATTTCGTGTAGGACCATGTCTGGGACAT
1 GTGTAAGACCATAGCTGGGATATGGCATCATTATGAGATCCCATGTAAGACCATATCTGAGAAAT
* *
85165639 GGCGTCGATATGAGAATC
66 GACATCGATATGAGAATC
*
85165657 GTGTAAGACCATAGCTGGGCTATTGGCATCGA-TATGAGATCCCATGTAAGACCATATCTGAGAA
1 GTGTAAGACCATAGCTGGGATA-TGGCATC-ATTATGAGATCCCATGTAAGACCATATCTGAGAA
85165721 ATGACAT
64 ATGACAT
85165728 TGGTATGATT
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
83 20 0.34
84 37 0.64
85 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (83 bp):
GTGTAAGACCATAGCTGGGATATGGCATCATTATGAGATCCCATGTAAGACCATATCTGAGAAAT
GACATCGATATGAGAATC
Found at i:85166698 original size:13 final size:13
Alignment explanation
Indices: 85166682--85166717 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
85166672 CCTAGGGACA
85166682 AGGGCGTGTGCCG
1 AGGGCGTGTGCCG
*
85166695 AGGGTGTGTGCCG
1 AGGGCGTGTGCCG
*
85166708 AGGGCATGTG
1 AGGGCGTGTG
85166718 AAGTGTACAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.11, C:0.17, G:0.53, T:0.19
Consensus pattern (13 bp):
AGGGCGTGTGCCG
Found at i:85168475 original size:11 final size:11
Alignment explanation
Indices: 85168459--85168514 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
85168449 TATACATGAT
85168459 ATGATATGCAC
1 ATGATATGCAC
*
85168470 ATGATATG--T
1 ATGATATGCAC
85168479 ATGATATGCAC
1 ATGATATGCAC
*
85168490 ATGATATG--G
1 ATGATATGCAC
85168499 ATGATATGCAC
1 ATGATATGCAC
85168510 ATGAT
1 ATGAT
85168515 GTATTCCTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:85168483 original size:20 final size:20
Alignment explanation
Indices: 85168458--85168514 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
85168448 GTATACATGA
85168458 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
85168478 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
85168498 GATGATATGCACATGAT
1 TATGATATGCACATGAT
85168515 GTATTCCTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:85168601 original size:26 final size:25
Alignment explanation
Indices: 85168560--85168632 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
85168550 GGAGGAAGTG
* *
85168560 CAAAAAGGGC-TGTGCCCGAGTTTA
1 CAAAAAGGGCTTTTGCCCCAGTTTA
85168584 CCAAAAAGGGCTTTTGCCCCAGTTTA
1 -CAAAAAGGGCTTTTGCCCCAGTTTA
* *
85168610 TAAAAAAGGCTTTTGCCCCAGTT
1 CAAAAAGGGCTTTTGCCCCAGTT
85168633 ATTAAAATAG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
25 31 0.72
26 12 0.28
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTTGCCCCAGTTTA
Found at i:85168634 original size:24 final size:26
Alignment explanation
Indices: 85168572--85168645 Score: 89
Period size: 25 Copynumber: 2.9 Consensus size: 26
85168562 AAAAGGGCTG
* ** *
85168572 TGCCCGAGTTTACCAAAAAGGGCTTT
1 TGCCCCAGTTTATTAAAAAAGGCTTT
85168598 TGCCCCAGTTTA-TAAAAAAGGCTTT
1 TGCCCCAGTTTATTAAAAAAGGCTTT
*
85168623 TGCCCCAG-TTATTAAAATAGGCT
1 TGCCCCAGTTTATTAAAAAAGGCT
85168646 AGGCCTCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 3 0.07
25 29 0.67
26 11 0.26
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
TGCCCCAGTTTATTAAAAAAGGCTTT
Found at i:85168889 original size:31 final size:34
Alignment explanation
Indices: 85168854--85168937 Score: 111
Period size: 38 Copynumber: 2.4 Consensus size: 34
85168844 TGTTTACAGT
85168854 AAAGGCTTCGGCCCA-AT-AA-TATGAAATATGA
1 AAAGGCTTCGGCCCATATGAAGTATGAAATATGA
85168885 AAAGGCTTCGGCCCAGTGTTATGAAGTATGAAATATGA
1 AAAGGCTTCGGCCCA----TATGAAGTATGAAATATGA
85168923 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
85168938 GTATATGCTG
Statistics
Matches: 46, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
31 15 0.33
36 2 0.04
37 2 0.04
38 27 0.59
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (34 bp):
AAAGGCTTCGGCCCATATGAAGTATGAAATATGA
Found at i:85173488 original size:48 final size:48
Alignment explanation
Indices: 85173426--85173610 Score: 334
Period size: 48 Copynumber: 3.9 Consensus size: 48
85173416 TATATATGTG
85173426 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
85173474 CGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
85173522 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85173570 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
85173611 GTGTGTATAT
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 130 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:85173801 original size:37 final size:37
Alignment explanation
Indices: 85173751--85173890 Score: 262
Period size: 37 Copynumber: 3.8 Consensus size: 37
85173741 TGGAATATAT
85173751 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
85173788 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85173825 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85173862 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
85173891 GGACTATTCG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:85180746 original size:5 final size:5
Alignment explanation
Indices: 85180736--85180785 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
85180726 TTTGGTATAC
* *
85180736 ATGAT ATGAT ATGCAC ATGAT ATG-T ATGAT ATGCAC ATGAT ATG-T ATGAT
1 ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT
85180786 CTGCACATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 8 0.22
5 21 0.57
6 8 0.22
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (5 bp):
ATGAT
Found at i:85180757 original size:11 final size:11
Alignment explanation
Indices: 85180741--85180796 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
85180731 TATACATGAT
85180741 ATGATATGCAC
1 ATGATATGCAC
*
85180752 ATGATATG--T
1 ATGATATGCAC
85180761 ATGATATGCAC
1 ATGATATGCAC
*
85180772 ATGATATG--T
1 ATGATATGCAC
*
85180781 ATGATCTGCAC
1 ATGATATGCAC
85180792 ATGAT
1 ATGAT
85180797 GTATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:85180765 original size:20 final size:20
Alignment explanation
Indices: 85180740--85180796 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
85180730 GTATACATGA
85180740 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
85180760 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
85180780 TATGATCTGCACATGAT
1 TATGATATGCACATGAT
85180797 GTATTCATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:85180927 original size:25 final size:25
Alignment explanation
Indices: 85180844--85180927 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
85180834 AGGAAGTGCA
* *
85180844 AAAAGGGC-TATGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
85180868 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
85180894 AAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
85180918 AAAAGAGGCT
1 AAAAG-GGCT
85180928 AGGCCTCCAA
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
24 9 0.17
25 31 0.57
26 14 0.26
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:85191475 original size:16 final size:16
Alignment explanation
Indices: 85191454--85191490 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
85191444 GAGTCTAGGG
85191454 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
85191470 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
85191486 GCAAA
1 GCAAA
85191491 TGTTTAGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.27
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:85193300 original size:39 final size:39
Alignment explanation
Indices: 85193246--85193393 Score: 226
Period size: 39 Copynumber: 3.8 Consensus size: 39
85193236 AAAGCCTTCG
* * * *
85193246 GGACATTAAGCCCGGATATATTTCCAACATATAGCCTGC
1 GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
* *
85193285 GGACCCTAAGTCCGGATATAATTCCAGCATATAGCCTGT
1 GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
85193324 GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
1 GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
*
85193363 AGACCTTAAGTCCGGATATAATTCCAG-ATAT
1 GGACCTTAAGTCCGGATATAATTCCAGCATAT
85193394 CATGCATATT
Statistics
Matches: 100, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 4 0.04
39 96 0.96
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (39 bp):
GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
Found at i:85198813 original size:15 final size:15
Alignment explanation
Indices: 85198793--85198823 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
85198783 TGTTTCAACC
85198793 TCTGTCCATTTACTT
1 TCTGTCCATTTACTT
85198808 TCTGTCCATTTACTT
1 TCTGTCCATTTACTT
85198823 T
1 T
85198824 GAACTGGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.06, T:0.55
Consensus pattern (15 bp):
TCTGTCCATTTACTT
Found at i:85205911 original size:39 final size:39
Alignment explanation
Indices: 85205852--85205930 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
85205842 AAGGGAAAAC
*
85205852 AAAGAAGCAAAATATTGAGAATTGACAACAGATTGAAAT
1 AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
85205891 AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
1 AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
85205930 A
1 A
85205931 GAACAGAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.54, C:0.09, G:0.18, T:0.19
Consensus pattern (39 bp):
AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
Found at i:85209836 original size:23 final size:23
Alignment explanation
Indices: 85209805--85209852 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
85209795 TTTCTTGTTC
*
85209805 AACTTTGGAGATAGGGTATTGAT
1 AACTCTGGAGATAGGGTATTGAT
85209828 AACTCTGGAGATAGGGTATTGAT
1 AACTCTGGAGATAGGGTATTGAT
85209851 AA
1 AA
85209853 TCATTTTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.31
Consensus pattern (23 bp):
AACTCTGGAGATAGGGTATTGAT
Found at i:85210411 original size:16 final size:16
Alignment explanation
Indices: 85210390--85210420 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
85210380 GCCTAACAAC
85210390 TCTCGGTTGTAAATCA
1 TCTCGGTTGTAAATCA
85210406 TCTCGGTTGTAAATC
1 TCTCGGTTGTAAATC
85210421 TCATATAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (16 bp):
TCTCGGTTGTAAATCA
Found at i:85214354 original size:37 final size:37
Alignment explanation
Indices: 85214304--85214455 Score: 268
Period size: 37 Copynumber: 4.1 Consensus size: 37
85214294 ACCTTTAGCT
* * *
85214304 CGGACGTAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
85214341 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
85214378 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
85214415 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
85214452 CGGA
1 CGGA
85214456 ATATATTTCC
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 110 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:85214726 original size:47 final size:47
Alignment explanation
Indices: 85214664--85215007 Score: 411
Period size: 47 Copynumber: 7.1 Consensus size: 47
85214654 ACACGTTTCG
* *
85214664 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* *
85214711 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* **
85214758 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
*
85214805 CATTGGCCATTCGGCCTTATCACGCATATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ATATAT-T-CATGTTCACATTCATCA
* *
85214860 CATTGGCCATTCGGCCTTATCACACATACGT-ATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATA-TTCATGTTCACATTCATCA
* **
85214907 CATTGGCCATTTGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CACATATAT-T-CATGTTCACATTCATCA
* ** *
85214958 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
85215005 CAT
1 CAT
85215008 AAAATCCTAA
Statistics
Matches: 257, Mismatches: 26, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
47 160 0.62
49 21 0.08
51 33 0.13
53 5 0.02
55 38 0.15
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
Found at i:85214854 original size:102 final size:98
Alignment explanation
Indices: 85214664--85215007 Score: 507
Period size: 102 Copynumber: 3.5 Consensus size: 98
85214654 ACACGTTTCG
* * * **
85214664 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
85214729 AT--CTC--ATATATGCATGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
85214758 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
85214823 ATCACGCATATATATATATACAGGTTCACATTCATCA
66 ATCA--C--ACATATATATACAGGTTCACATTCATCA
* *
85214860 CATTGGCCATTCGGCCTTATCACACATACGTATGTTCACATTCATCACATTGGCCATTTGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
85214925 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
*
85214958 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
85215008 AAAATCCTAA
Statistics
Matches: 227, Mismatches: 15, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
94 62 0.27
98 75 0.33
100 1 0.00
102 89 0.39
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACAGGTTCACATTCATCA
Found at i:85214855 original size:149 final size:150
Alignment explanation
Indices: 85214687--85214985 Score: 465
Period size: 149 Copynumber: 2.0 Consensus size: 150
85214677 GCCTTACCAC
* * * * *
85214687 ATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
*
85214752 TCATCACATTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATTGGCCATT
66 TCATCACATTGGCCATTCGGCCTTATCACACATACACATGGTTCACATTCATCACATTGGCCATT
*
85214816 CGGCCTTATCACGCATATAT
131 CGGCCTTATCACACATATAT
*
85214836 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGTATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
* * *
85214901 TCATCACATTGGCCATTTGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCC
66 TCATCACATTGGCCATTCGGCCTTATCACACATACACAT---GGTTCACATTCATCACATTGGCC
85214966 ATTCGGCCTTATCACACATA
128 ATTCGGCCTTATCACACATA
85214986 CGCATGTTCA
Statistics
Matches: 135, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
149 94 0.70
153 41 0.30
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (150 bp):
ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
TCATCACATTGGCCATTCGGCCTTATCACACATACACATGGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACACATATAT
Found at i:85218937 original size:40 final size:40
Alignment explanation
Indices: 85218888--85219239 Score: 551
Period size: 40 Copynumber: 8.8 Consensus size: 40
85218878 CCAGCATGAT
* * * * *
85218888 TGCTCTTCGGGACCTATCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
85218928 TGCTTTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
85218968 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
85219008 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
85219048 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
85219088 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
85219128 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
85219168 TTCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
85219208 TGCTCCTCGGGACTTAGCCCGGGTATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
85219240 CTCAATTCTC
Statistics
Matches: 291, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 291 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:85220552 original size:37 final size:37
Alignment explanation
Indices: 85220502--85220653 Score: 268
Period size: 37 Copynumber: 4.1 Consensus size: 37
85220492 ACCTTTAGCT
* * *
85220502 CGGACGTAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
85220539 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
85220576 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
85220613 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
85220650 CGGA
1 CGGA
85220654 ATATATTTCC
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 110 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:85220924 original size:47 final size:47
Alignment explanation
Indices: 85220862--85221203 Score: 425
Period size: 47 Copynumber: 7.1 Consensus size: 47
85220852 ACACGTTTCG
* *
85220862 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* *
85220909 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* **
85220956 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
*
85221003 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATAT-T-CATGTTCACATTCATCA
* *
85221056 CATTGGCCATTCGGCCTTATCACACATACGT-ATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATA-TTCATGTTCACATTCATCA
* **
85221103 CATTGGCCATTTGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CACATATAT-T-CATGTTCACATTCATCA
* ** *
85221154 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
85221201 CAT
1 CAT
85221204 AAAATCCTAA
Statistics
Matches: 257, Mismatches: 26, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
47 160 0.62
49 21 0.08
51 38 0.15
53 38 0.15
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
Found at i:85221052 original size:147 final size:148
Alignment explanation
Indices: 85220862--85221181 Score: 465
Period size: 147 Copynumber: 2.2 Consensus size: 148
85220852 ACACGTTTCG
* *
85220862 CATTAGCCATTCGGCCTTA-C-CAC--ATATAT-T-CATGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
* * * *
85220921 GGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
66 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
85220986 CAT-GTTCACATTCATCA
131 CATGGTTCACATTCATCA
*
85221003 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
* * *
85221068 GGCCTTATCACACATACGTATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACACATATA
66 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
*
85221133 TATACGGGTTCACATTCATCA
131 CAT---GGTTCACATTCATCA
85221154 CATTGGCCATTCGGCCTTATCACACATA
1 CATTGGCCATTCGGCCTTATCACACATA
85221182 CGCATGTTCA
Statistics
Matches: 157, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
141 18 0.11
142 1 0.01
143 2 0.01
145 6 0.04
146 1 0.01
147 88 0.56
151 41 0.26
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (148 bp):
CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
CATGGTTCACATTCATCA
Found at i:85221073 original size:100 final size:98
Alignment explanation
Indices: 85220862--85221203 Score: 521
Period size: 100 Copynumber: 3.5 Consensus size: 98
85220852 ACACGTTTCG
* * * **
85220862 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
85220927 AT--C-T-CATATATGCATGTTCACATTCATCA
66 ATCACATATATATATACAGGTTCACATTCATCA
85220956 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
85221021 ATCACGCATATATATATACAGGTTCACATTCATCA
66 ATCA--CATATATATATACAGGTTCACATTCATCA
* *
85221056 CATTGGCCATTCGGCCTTATCACACATACGTATGTTCACATTCATCACATTGGCCATTTGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
85221121 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACATATATATATACAGGTTCACATTCATCA
*
85221154 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
85221204 AAAATCCTAA
Statistics
Matches: 228, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
94 62 0.27
98 76 0.33
99 1 0.00
100 89 0.39
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATATATACAGGTTCACATTCATCA
Found at i:85223822 original size:29 final size:27
Alignment explanation
Indices: 85223804--85223873 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
85223794 ATATTAAGTC
85223804 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
85223831 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
85223859 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
85223874 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:85223867 original size:28 final size:28
Alignment explanation
Indices: 85223804--85223901 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
85223794 ATATTAAGTC
*
85223804 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
85223831 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
85223859 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
85223888 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85223902 CGAAATCAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:85232983 original size:56 final size:56
Alignment explanation
Indices: 85232923--85233171 Score: 347
Period size: 56 Copynumber: 4.4 Consensus size: 56
85232913 TCCAAGACAG
* *
85232923 GGTCTTACTCGCACACATATATCGAAGTCACATATTGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* ** * *
85232979 GGTCTTACTCGCACACATATATCGAAATCACATATTAATGCTAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* * * *
85233035 GGTTTTACTCGCACACATATATTGAAGTGACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* *
85233091 GGTCTTACTCACACACATATATCGGAA-TCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATC-GAAGTCACATATCGATGCCAACGTATTAAACGT
*
85233147 GGTCTTACTCGCACATCACATATCG
1 GGTCTTACTCGCACA-CATATATCG
85233172 GAATCCTATG
Statistics
Matches: 169, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
56 159 0.94
57 10 0.06
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
Found at i:85237472 original size:24 final size:24
Alignment explanation
Indices: 85237445--85237492 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
85237435 TAACAAACAA
85237445 CCATCAGTCCTGATCTGAAATTCT
1 CCATCAGTCCTGATCTGAAATTCT
85237469 CCATCAGTCCTGATCTGAAATTCT
1 CCATCAGTCCTGATCTGAAATTCT
85237493 TAGTCAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (24 bp):
CCATCAGTCCTGATCTGAAATTCT
Found at i:85239357 original size:46 final size:46
Alignment explanation
Indices: 85239194--85239416 Score: 254
Period size: 46 Copynumber: 4.8 Consensus size: 46
85239184 TGTAACCCGC
* * *** *
85239194 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
* * * * *
85239240 CCATGAGTGAACTCGGACTGAACTCAACAAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA----TATTTGCAT
* *
85239290 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
* *
85239333 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
85239379 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
85239417 GCTCAACCAT
Statistics
Matches: 147, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
43 7 0.05
44 1 0.01
45 2 0.01
46 103 0.70
47 27 0.18
48 2 0.01
49 1 0.01
50 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
Found at i:85239360 original size:93 final size:92
Alignment explanation
Indices: 85239194--85239416 Score: 272
Period size: 93 Copynumber: 2.4 Consensus size: 92
85239184 TGTAACCCGC
* *** *
85239194 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACT
* *
85239259 GAACTCAACAAGTTCGGATGCCTAGTTACAT
66 CAACTCAACAAGTTC--A-GAC-AGTTACAT
* *
85239290 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCATCCATAAGTGAACTCGGACT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACT
* * *
85239352 CAACTCAACGAGTTCAGACATTTGCAT
66 CAACTCAACAAGTTCAGACAGTTACAT
*
85239379 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAT
85239417 GCTCAACCAT
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
89 6 0.05
90 3 0.03
91 3 0.03
92 30 0.27
93 65 0.59
94 2 0.02
95 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (92 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACT
CAACTCAACAAGTTCAGACAGTTACAT
Found at i:85242331 original size:69 final size:69
Alignment explanation
Indices: 85242220--85242361 Score: 275
Period size: 69 Copynumber: 2.1 Consensus size: 69
85242210 GATCAATAGC
*
85242220 CATAGAAATATTTCTGAGAACGGGTAAACACATAGAACATCTCAAAAGAGACTGCTAAATCTGTC
1 CATAGAAATATTTCTGAGAACGGGTAAACACATAGAACATCTCAAAAGAGACTGCTAAATCTGTA
85242285 CAGT
66 CAGT
85242289 CATAGAAATATTTCTGAGAACGGGTAAACACATAGAACATCTCAAAAGAGACTGCTAAATCTGTA
1 CATAGAAATATTTCTGAGAACGGGTAAACACATAGAACATCTCAAAAGAGACTGCTAAATCTGTA
85242354 CAGT
66 CAGT
85242358 CATA
1 CATA
85242362 ACTGTCACAC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (69 bp):
CATAGAAATATTTCTGAGAACGGGTAAACACATAGAACATCTCAAAAGAGACTGCTAAATCTGTA
CAGT
Found at i:85245029 original size:46 final size:46
Alignment explanation
Indices: 85244869--85245045 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
85244859 TGTAACCCGC
* *** *
85244869 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
* * * * * * *
85244915 CCATGAGTGAACTCGGACTGAACTGAACAAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA----TATTTGCAT
*
85244965 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
* *
85245008 CCATAAGTGAACTCGGGCTCAACTCAACGAGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAT
85245046 GCTCAACCAT
Statistics
Matches: 102, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
45 2 0.02
46 59 0.58
47 26 0.25
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
Found at i:85245041 original size:93 final size:93
Alignment explanation
Indices: 85244876--85245047 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
85244866 CGCCCATAAG
* * * * *
85244876 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTGAACTGA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85244941 ACAAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
* * * *
85244969 CGAACTCGGACTCAACTCAACGAGTTCGGATATTTGCATCCATAAGTGAACTCGGGCTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
85245034 ACGAGTTCGGATGC
66 ACAAGTTCGGATGC
85245048 TCAACCATCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:85247553 original size:40 final size:40
Alignment explanation
Indices: 85247476--85247691 Score: 321
Period size: 40 Copynumber: 5.4 Consensus size: 40
85247466 AAACCAAGTA
* *
85247476 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
85247515 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
85247555 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85247595 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
85247635 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
85247675 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
85247692 AGTTATCATC
Statistics
Matches: 162, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 147 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:85259109 original size:16 final size:16
Alignment explanation
Indices: 85259088--85259118 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85259078 CAAACTTCCG
85259088 GCTTTTCGACATTTCA
1 GCTTTTCGACATTTCA
*
85259104 GCTTTTCGGCATTTC
1 GCTTTTCGACATTTC
85259119 GAGATTTGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.26, G:0.16, T:0.45
Consensus pattern (16 bp):
GCTTTTCGACATTTCA
Found at i:85265065 original size:27 final size:25
Alignment explanation
Indices: 85265020--85265069 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 25
85265010 ATGTTTAAAA
85265020 ACTTTTATTTATTATTTTTATTTTC
1 ACTTTTATTTATTATTTTTATTTTC
85265045 ACTTTTATCTTTATCTA-TTTTATTT
1 ACTTTTA--TTTAT-TATTTTTATTT
85265070 AAGTACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 7 0.32
27 13 0.59
28 2 0.09
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (25 bp):
ACTTTTATTTATTATTTTTATTTTC
Found at i:85270254 original size:27 final size:27
Alignment explanation
Indices: 85270223--85270400 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85270213 TAAATTGTAC
85270223 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
85270250 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85270276 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
85270304 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
85270332 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85270359 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
85270386 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85270401 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:85270337 original size:82 final size:81
Alignment explanation
Indices: 85270224--85270379 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85270214 AAATTGTACA
* *
85270224 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85270288 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
85270305 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
85270370 TGCGAGTTGA
65 TGCGAATTGA
85270380 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85270391 original size:82 final size:81
Alignment explanation
Indices: 85270220--85270400 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
85270210 GATTAAATTG
* *
85270220 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85270285 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
85270301 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85270365 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85270383 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85270401 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85270411 original size:27 final size:27
Alignment explanation
Indices: 85270305--85270411 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
85270295 TGACCATGCG
* * * *
85270305 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
85270333 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
85270360 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
85270387 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
85270412 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:85274614 original size:27 final size:26
Alignment explanation
Indices: 85274584--85274760 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 26
85274574 AAATTGTTCA
* *
85274584 GCACTAAGTGTGCGATTCGACTTTGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
85274611 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
85274638 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
* *
85274665 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
85274693 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
85274720 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
85274747 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
85274761 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:85274707 original size:82 final size:81
Alignment explanation
Indices: 85274584--85274739 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
85274574 AAATTGTTCA
* * * * *
85274584 GCACTAAGTGTGCGATTCGACTTTGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
85274648 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
85274665 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
85274730 TGCGAGTTGA
65 TGCGAATTGA
85274740 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.28
82 46 0.72
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85274751 original size:82 final size:81
Alignment explanation
Indices: 85274582--85274760 Score: 198
Period size: 82 Copynumber: 2.2 Consensus size: 81
85274572 TTAAATTGTT
* * * * *
85274582 CAGCACTAAGTGTGCGATTCGACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
85274647 GTGCGAATTGACCATG
66 GTGCGAATTGACCATA
* ** *
85274663 CGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAA
1 CAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAA
* **
85274727 GTGTGCGAGTTGATTATA
64 GTGTGCGAATTGACCATA
* *
85274745 TAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
85274761 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 19 0.24
82 61 0.76
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
CAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGACCATA
Found at i:85277181 original size:10 final size:10
Alignment explanation
Indices: 85277166--85277190 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
85277156 GTTGATTGGC
85277166 TGATTGACTG
1 TGATTGACTG
85277176 TGATTGACTG
1 TGATTGACTG
85277186 TGATT
1 TGATT
85277191 CCTTTGTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.28, T:0.44
Consensus pattern (10 bp):
TGATTGACTG
Found at i:85277287 original size:25 final size:25
Alignment explanation
Indices: 85277259--85277322 Score: 110
Period size: 25 Copynumber: 2.5 Consensus size: 25
85277249 GCTGAAGCTC
85277259 TAGTTGCATTTCAAGAGGTATTTTA
1 TAGTTGCATTTCAAGAGGTATTTTA
*
85277284 TAGTTGCAATTCAAGAGGTATTTTA
1 TAGTTGCATTTCAAGAGGTATTTTA
85277309 TAGTTGCAATTTCA
1 TAGTTGC-ATTTCA
85277323 GTAAATTGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 31 0.86
26 5 0.14
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (25 bp):
TAGTTGCATTTCAAGAGGTATTTTA
Found at i:85277488 original size:18 final size:19
Alignment explanation
Indices: 85277465--85277505 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
85277455 TAATGGACTT
85277465 TATAGGATAA-TTTATTGG
1 TATAGGATAATTTTATTGG
85277483 TATAGGATAATTTTTATTGG
1 TATAGGATAA-TTTTATTGG
85277503 TAT
1 TAT
85277506 TTTTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (19 bp):
TATAGGATAATTTTATTGG
Found at i:85295289 original size:27 final size:24
Alignment explanation
Indices: 85295242--85295290 Score: 62
Period size: 27 Copynumber: 1.9 Consensus size: 24
85295232 ATGTTTAAAA
*
85295242 ACTTTTATTTATTATTTTATTTTC
1 ACTTTTATTTATTATCTTATTTTC
85295266 ACTTTTATCTTTATTTATCTTATTT
1 ACTTTTA--TTTA-TTATCTTATTT
85295291 AAGTACTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
26 4 0.19
27 10 0.48
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.69
Consensus pattern (24 bp):
ACTTTTATTTATTATCTTATTTTC
Found at i:85300461 original size:27 final size:27
Alignment explanation
Indices: 85300430--85300607 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85300420 TAAATTGTAC
85300430 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
85300457 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85300483 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
85300511 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
85300539 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85300566 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
85300593 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85300608 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:85300544 original size:82 final size:81
Alignment explanation
Indices: 85300431--85300586 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85300421 AAATTGTACA
* *
85300431 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85300495 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
85300512 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
85300577 TGCGAGTTGA
65 TGCGAATTGA
85300587 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85300598 original size:82 final size:81
Alignment explanation
Indices: 85300427--85300607 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
85300417 GATTAAATTG
* *
85300427 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85300492 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
85300508 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85300572 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85300590 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85300608 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85300618 original size:27 final size:27
Alignment explanation
Indices: 85300512--85300618 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
85300502 TGACCATGCG
* * * *
85300512 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
85300540 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
85300567 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
85300594 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
85300619 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:85304812 original size:27 final size:26
Alignment explanation
Indices: 85304782--85304958 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 26
85304772 AAATTGTTCA
* *
85304782 GCACTAAGTGTGCGATTCGACTTTGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
85304809 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
85304836 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
* *
85304863 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
85304891 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
85304918 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
85304945 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
85304959 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:85304905 original size:82 final size:81
Alignment explanation
Indices: 85304782--85304937 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
85304772 AAATTGTTCA
* * * * *
85304782 GCACTAAGTGTGCGATTCGACTTTGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
85304846 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
85304863 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
85304928 TGCGAGTTGA
65 TGCGAATTGA
85304938 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.28
82 46 0.72
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85304949 original size:82 final size:81
Alignment explanation
Indices: 85304780--85304958 Score: 198
Period size: 82 Copynumber: 2.2 Consensus size: 81
85304770 TTAAATTGTT
* * * * *
85304780 CAGCACTAAGTGTGCGATTCGACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
85304845 GTGCGAATTGACCATG
66 GTGCGAATTGACCATA
* ** *
85304861 CGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAA
1 CAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAA
* **
85304925 GTGTGCGAGTTGATTATA
64 GTGTGCGAATTGACCATA
* *
85304943 TAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
85304959 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 19 0.24
82 61 0.76
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
CAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGACCATA
Found at i:85311835 original size:27 final size:27
Alignment explanation
Indices: 85311804--85311981 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85311794 TAAATTGTAC
85311804 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
85311831 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85311857 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
85311885 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
85311913 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85311940 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
85311967 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85311982 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:85311918 original size:82 final size:81
Alignment explanation
Indices: 85311805--85311960 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85311795 AAATTGTACA
* *
85311805 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85311869 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
85311886 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
85311951 TGCGAGTTGA
65 TGCGAATTGA
85311961 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85311972 original size:82 final size:81
Alignment explanation
Indices: 85311801--85311981 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
85311791 GATTAAATTG
* *
85311801 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85311866 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
85311882 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85311946 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85311964 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85311982 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85311992 original size:27 final size:27
Alignment explanation
Indices: 85311886--85311992 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
85311876 TGACCATGCG
* * * *
85311886 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
85311914 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
85311941 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
85311968 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
85311993 CATTCATGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:85316873 original size:13 final size:13
Alignment explanation
Indices: 85316855--85316879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85316845 AGAAACCATA
85316855 AAATTTTCACACG
1 AAATTTTCACACG
85316868 AAATTTTCACAC
1 AAATTTTCACAC
85316880 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:85330772 original size:25 final size:24
Alignment explanation
Indices: 85330722--85330772 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
85330712 AACATCACAA
* ** *
85330722 AACTCAACTATTCATCAATTTTAT
1 AACTCAAATATTCATCAAAATCAT
85330746 AACTCAAAATATTCATCAAAATCAT
1 AACTC-AAATATTCATCAAAATCAT
85330771 AA
1 AA
85330773 ATTCAAGCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (24 bp):
AACTCAAATATTCATCAAAATCAT
Found at i:85337477 original size:27 final size:27
Alignment explanation
Indices: 85337447--85337623 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
85337437 ATATTGAGTC
* *
85337447 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
85337474 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
85337501 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
85337529 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
85337556 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
85337583 CGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
85337609 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
85337624 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 15 0.12
27 88 0.69
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:85337539 original size:55 final size:54
Alignment explanation
Indices: 85337447--85337623 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
85337437 ATATTGAGTC
* * * * *
85337447 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
85337501 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
85337556 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
85337609 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
85337624 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 16 0.16
54 42 0.41
55 45 0.44
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:85337586 original size:82 final size:80
Alignment explanation
Indices: 85337468--85337622 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
85337458 TGCTATATAA
* *
85337468 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-AAA-TCGCA
*
85337533 CACTTAGTGCCGCATGG
64 CACATAGTGCCGCATGG
* * **
85337550 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTAAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCAC
85337614 ACATAGTGC
65 ACATAGTGC
85337623 TGTACAATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 14 0.22
81 4 0.06
82 47 0.72
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCACA
CATAGTGCCGCATGG
Found at i:85345544 original size:27 final size:27
Alignment explanation
Indices: 85345514--85345690 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
85345504 ATATTGAGTC
* *
85345514 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
85345541 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
85345568 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
85345596 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
85345623 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
85345650 CGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
85345676 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
85345691 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 15 0.12
27 88 0.69
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:85345606 original size:55 final size:54
Alignment explanation
Indices: 85345514--85345690 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
85345504 ATATTGAGTC
* * * * *
85345514 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
85345568 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
85345623 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
85345676 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
85345691 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 16 0.16
54 42 0.41
55 45 0.44
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:85345653 original size:82 final size:80
Alignment explanation
Indices: 85345535--85345689 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
85345525 TGCTATATAA
* *
85345535 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-AAA-TCGCA
*
85345600 CACTTAGTGCCGCATGG
64 CACATAGTGCCGCATGG
* * **
85345617 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTAAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCAC
85345681 ACATAGTGC
65 ACATAGTGC
85345690 TGTACAATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 14 0.22
81 4 0.06
82 47 0.72
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCACA
CATAGTGCCGCATGG
Found at i:85348916 original size:37 final size:37
Alignment explanation
Indices: 85348866--85349012 Score: 249
Period size: 37 Copynumber: 4.0 Consensus size: 37
85348856 CTTTAGCTCA
* *
85348866 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
85348903 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
85348940 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
85348977 GACATAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
85349013 AGAATATATT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:85349281 original size:47 final size:47
Alignment explanation
Indices: 85349220--85349404 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
85349210 TACATATATT
* * * *
85349220 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
85349267 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
85349314 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
85349361 TCACATTGGCCATTCGGCCTTGTCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
85349405 CACAATTATC
Statistics
Matches: 125, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:85360694 original size:27 final size:27
Alignment explanation
Indices: 85360651--85361020 Score: 472
Period size: 27 Copynumber: 13.7 Consensus size: 27
85360641 CGTACCTGAA
* *
85360651 CCCTCATGTGATAAAATTATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
*
85360678 CCCATATGTGATAAAATGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* *
85360705 CCCTTATGTGATCAAATGATGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
* *
85360732 CCCTCATGTGATAAAATGATGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
* * *
85360759 CCCTCATGTGATCAAATGACT-ATTTTG
1 CCCTTATGTGATAAAATGA-TGATTTTT
*
85360786 CCCTCATGTGATAAAATGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* * *
85360813 CCCTTAGGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
* * **
85360840 CCCTTAAGTGAGAAAATGACAATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* * *
85360867 CCCTTATGTGATAAAATAACGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
*
85360894 CCCTTAGGTGATAAAATGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
*
85360921 CCCTTATGTGGTAAAATGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* *
85360948 CCCTTATGTGATAAAATAACGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* *
85360975 CCCTTATGTGATAAAATGAAGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
*
85361002 CCCTTAGGTGATAAAATGA
1 CCCTTATGTGATAAAATGA
85361021 CCGAAATACC
Statistics
Matches: 304, Mismatches: 37, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 302 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.38
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGATGATTTTT
Found at i:85361043 original size:27 final size:27
Alignment explanation
Indices: 85361013--85361075 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
85361003 CCTTAGGTGA
*
85361013 TAAAATGACCGAAATACCCCTA-TAGGG
1 TAAAATGACCGAAATA-CCCTAGTAAGG
* * *
85361040 TAAAATGACTGTAATACCTTAGTAAGG
1 TAAAATGACCGAAATACCCTAGTAAGG
85361067 TAAAATGAC
1 TAAAATGAC
85361076 AGATTTGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.24
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTAGTAAGG
Done.