Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 260 of 316
Found at i:86028844 original size:48 final size:48
Alignment explanation
Indices: 86028792--86029202 Score: 402
Period size: 48 Copynumber: 8.6 Consensus size: 48
86028782 CAAGTTCTAA
* * * * *
86028792 ACATGGTCTTACACTGGCTCACATCTCGAGGCTGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
* * * * * *
86028840 ACATGGTCTTACACTAGCTCTCGTCTCAACGCTGATGCCATGTCCAAG
1 ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
* * * *
86028888 ACATGGTCTTACACTGGCTCTCATA--AGGTGACCGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATATCAAG-G-CCGATGCCATGTCCCAG
* * * *
86028936 ACATGGTCTTACACTGGCTCTCATA--AGGTGGCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCACATATCAAG-GCCGATGCCATGTCCCAG
* * * *
86028983 ACATGGTCTTACACTAGCGCACATATCAATGTCGATGCCATGTCCCAA
1 ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
* * * ** * *
86029031 ACATGGTCTTGCACTGGCTCGCACTA-CATTGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACA-TATCAAGGCCGATGCCATGTCCCAG
* *
86029079 ACATGGTCTTACACTAGCTCTA-ATATCATGGCAGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTC-ACATATCAAGGCCGATGCCATGTCCCAG
* * *
86029127 ACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATATCCCAG
1 ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
* *
86029175 ACATGGTCTTTCACTAGCACACATATCA
1 ACATGGTCTTACACTAGCTCACATATCA
86029203 CCCAAATATC
Statistics
Matches: 312, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
46 1 0.00
47 41 0.13
48 267 0.86
49 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCCATGTCCCAG
Found at i:86035959 original size:16 final size:16
Alignment explanation
Indices: 86035940--86035970 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86035930 ATTGATTTTG
*
86035940 TACATGACATTCTGCA
1 TACATGACATACTGCA
86035956 TACATGACATACTGC
1 TACATGACATACTGC
86035971 TTGGGATTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
TACATGACATACTGCA
Found at i:86036261 original size:32 final size:32
Alignment explanation
Indices: 86036203--86036274 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
86036193 TATTGAAATA
* * *
86036203 GGCTAGGCCCAACTGATACTGGTTCTGATATG
1 GGCTAGGCCAAACTGATACTGATTCTGAGATG
* *
86036235 GGCTTGGCCAAACTGATATTGATTCTGAGATG
1 GGCTAGGCCAAACTGATACTGATTCTGAGATG
86036267 GGCTAGGC
1 GGCTAGGC
86036275 GCAATTGAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (32 bp):
GGCTAGGCCAAACTGATACTGATTCTGAGATG
Found at i:86038554 original size:15 final size:17
Alignment explanation
Indices: 86038536--86038567 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
86038526 TAGCATAATT
86038536 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
86038551 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
86038568 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:86039769 original size:81 final size:81
Alignment explanation
Indices: 86039631--86039843 Score: 291
Period size: 81 Copynumber: 2.6 Consensus size: 81
86039621 GAATACTTTA
* *** * * *** *
86039631 ATTTACCAAATTACTGAAATACCCTTGATTTACAGAATTATTGTTTTACCCTTTATTTACAAAAT
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCTATTTACAAAAT
86039696 TACTATTTTACCCTCG
66 TACTATTTTACCCTCG
*
86039712 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCTATTTACAGAAT
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCTATTTACAAAAT
*
86039777 TATTATTTTACCCTCG
66 TACTATTTTACCCTCG
* * *
86039793 ATTTATAGAATTACTGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCC
86039844 ATAGGGTGTT
Statistics
Matches: 117, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 117 1.00
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43
Consensus pattern (81 bp):
ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCTATTTACAAAAT
TACTATTTTACCCTCG
Found at i:86039839 original size:27 final size:27
Alignment explanation
Indices: 86039650--86039843 Score: 226
Period size: 27 Copynumber: 7.2 Consensus size: 27
86039640 ATTACTGAAA
* * * *
86039650 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
**
86039677 TACCCTTTATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
86039704 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
86039731 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
86039758 TACCCTCTATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
86039785 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
86039812 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
86039839 TACCC
1 TACCC
86039844 ATAGGGTGTT
Statistics
Matches: 145, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:86040136 original size:27 final size:28
Alignment explanation
Indices: 86040078--86040139 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
86040068 CCTCGCTGCA
* *
86040078 ATCTGGTAGCCTCGCAACATATATCTGT
1 ATCTGGTGGCCTAGCAACATATATCTGT
*
86040106 -TCTGGTGGCCTAGCCACA-ATATCTGT
1 ATCTGGTGGCCTAGCAACATATATCTGT
86040132 ATCTGGTG
1 ATCTGGTG
86040140 ACTTCGTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
ATCTGGTGGCCTAGCAACATATATCTGT
Found at i:86040352 original size:37 final size:37
Alignment explanation
Indices: 86040307--86040391 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 37
86040297 CGTGATACTA
86040307 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTTTG
1 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTTTG
* * * * * *
86040344 TTTTTGATTCTGATTCTGTCACTTGATTTTGATTTTG
1 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTTTG
86040381 ATTCTGATTCT
1 ATTCTGATTCT
86040392 CATTTTGATT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.54
Consensus pattern (37 bp):
ATTCTGATTCTAATTCTGTCACCTAATTCTGATTTTG
Found at i:86040371 original size:19 final size:19
Alignment explanation
Indices: 86040311--86040377 Score: 64
Period size: 19 Copynumber: 3.6 Consensus size: 19
86040301 ATACTAATTC
* *
86040311 TGATTCTAATTCTGTCACC
1 TGATTCTGATTCTGTCACT
* * **
86040330 TAATTCTGATTTTGT-TTT
1 TGATTCTGATTCTGTCACT
86040348 TGATTCTGATTCTGTCACT
1 TGATTCTGATTCTGTCACT
*
86040367 TGATTTTGATT
1 TGATTCTGATT
86040378 TTGATTCTGA
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
18 13 0.36
19 23 0.64
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.54
Consensus pattern (19 bp):
TGATTCTGATTCTGTCACT
Found at i:86042410 original size:27 final size:27
Alignment explanation
Indices: 86042397--86042590 Score: 253
Period size: 27 Copynumber: 7.2 Consensus size: 27
86042387 ATTACTGAAA
* *
86042397 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
86042424 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
86042451 TACCCTCGGTTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
86042478 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
86042505 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
86042532 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
86042559 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
86042586 TACCC
1 TACCC
86042591 CTAGGGTGTT
Statistics
Matches: 147, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:86042464 original size:54 final size:54
Alignment explanation
Indices: 86042397--86042590 Score: 280
Period size: 54 Copynumber: 3.6 Consensus size: 54
86042387 ATTACTGAAA
* * * * * *
86042397 TACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTT
*
86042451 TACCCTCGGTTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTT
* * *
86042505 TACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTT
* *
86042559 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACTATTTTACCC
86042591 CTAGGGTGTT
Statistics
Matches: 125, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 125 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTT
Found at i:86042482 original size:81 final size:81
Alignment explanation
Indices: 86042397--86042590 Score: 280
Period size: 81 Copynumber: 2.4 Consensus size: 81
86042387 ATTACTGAAA
* ** * *
86042397 TACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGGTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
86042462 TACAAAATTACTATTT
66 TACAAAATTACCATTT
* *
86042478 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* * *
86042543 TATAGAATTACCGTTT
66 TACAAAATTACCATTT
*
86042559 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAGAATTACCATTTTACCC
86042591 CTAGGGTGTT
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 101 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:86043133 original size:6 final size:6
Alignment explanation
Indices: 86043094--86043263 Score: 96
Period size: 6 Copynumber: 27.7 Consensus size: 6
86043084 TTGCATTCAT
* * *
86043094 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * * *
86043143 -TCACCTA ATTCTG ATTCTG TTTCTG ATTCTA ATTCTG -TCACCTA ATTCTA
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
86043193 ATTCTG TTTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* * *
86043242 ATTCTC ATTTTG ATTCTA ATTC
1 ATTCTG ATTCTG ATTCTG ATTC
86043264 CCATCTGGTA
Statistics
Matches: 124, Mismatches: 28, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
5 5 0.04
6 105 0.85
7 10 0.08
8 4 0.03
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:86043157 original size:37 final size:37
Alignment explanation
Indices: 86043116--86043246 Score: 199
Period size: 37 Copynumber: 3.5 Consensus size: 37
86043106 ATTCTGTTAC
*
86043116 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
*
86043153 CTGATTCTGTTTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
* * * *
86043190 CTAATTCTGTTTCTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
*
86043227 CTGATTCTGATTCTAATTCT
1 CTGATTCTGATTCTGATTCT
86043247 CATTTTGATT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 86 1.00
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
Found at i:86043191 original size:31 final size:31
Alignment explanation
Indices: 86043094--86043246 Score: 126
Period size: 31 Copynumber: 4.5 Consensus size: 31
86043084 TTGCATTCAT
* * * * *
86043094 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATTCTG
86043125 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATTCTG
86043156 ATTCTGTTTCTGATTCTAATTCTGTCACCTAATTCTAATTCTG
1 A------TTCTGATTCTAATTCTGTCA-C-----CTAATTCTG
* * *
86043199 TTTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATTCTG
86043230 ATTCTGATTCTAATTCT
1 ATTCTGATTCTAATTCT
86043247 CATTTTGATT
Statistics
Matches: 100, Mismatches: 10, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
31 50 0.50
36 1 0.01
37 39 0.39
38 1 0.01
43 9 0.09
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATTCTG
Found at i:86046263 original size:39 final size:40
Alignment explanation
Indices: 86046112--86046281 Score: 200
Period size: 40 Copynumber: 4.3 Consensus size: 40
86046102 GGACTAAGAT
* * * * *
86046112 CCGAAGGCATTTGTGCGAGATAC-AAATTCCAGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * * *
86046152 CCGAAGGCCTTGGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
*
86046192 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
* * *
86046232 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
86046271 CCGAAGGCATT
1 CCGAAGGCATT
86046282 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:86046301 original size:79 final size:79
Alignment explanation
Indices: 86046151--86046316 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
86046141 CAGGTTAAGC
* * * ** * *
86046151 CCCGAAGGCCTTGGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 CCCGAAGGCATTGGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACT
**
86046216 AAATCCGGGTTATGT
66 AAATCC-GGTTAAAT
* * * *
86046231 CCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCCGAAGGCATTGGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-C
*
86046294 TATATCCGGTTAAAT
65 TAAATCCGGTTAAAT
86046309 CCCGAAGG
1 CCCGAAGG
86046317 TACGTGATTT
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.21
79 45 0.63
80 11 0.15
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCCGAAGGCATTGGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACT
AAATCCGGTTAAAT
Found at i:86048656 original size:13 final size:13
Alignment explanation
Indices: 86048638--86048663 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86048628 CCGTGCACCC
86048638 TTAGTTTAGATAA
1 TTAGTTTAGATAA
86048651 TTAGTTTAGATAA
1 TTAGTTTAGATAA
86048664 ACAAATCCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TTAGTTTAGATAA
Found at i:86059359 original size:30 final size:30
Alignment explanation
Indices: 86059325--86059381 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
86059315 GGGACACGGG
86059325 CGTGTGTAGTACACAGCCTGACCACACAGA
1 CGTGTGTAGTACACAGCCTGACCACACAGA
86059355 CGTGTGTAGTACACAGCCTGACCACAC
1 CGTGTGTAGTACACAGCCTGACCACAC
86059382 GAGCTTGTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.32, G:0.23, T:0.18
Consensus pattern (30 bp):
CGTGTGTAGTACACAGCCTGACCACACAGA
Found at i:86067023 original size:22 final size:22
Alignment explanation
Indices: 86066969--86067084 Score: 126
Period size: 22 Copynumber: 5.1 Consensus size: 22
86066959 TCTTTGATAA
*
86066969 TTAGCACGTTAGTGCTCTCCAT-T
1 TTAGCACATTAGTGCTCT-C-TGT
86066992 TACTAGCACATTAGTGCTCTCTGT
1 T--TAGCACATTAGTGCTCTCTGT
* *
86067016 TTAGCACATTTGTGCTCTCTTT
1 TTAGCACATTAGTGCTCTCTGT
*
86067038 TTAGCACATTTGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
* * *
86067060 ATAGCACTTTAGTGATCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
86067082 TTA
1 TTA
86067085 ATACTGCATA
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
22 60 0.74
23 2 0.02
24 3 0.04
25 16 0.20
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.43
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:86072382 original size:29 final size:29
Alignment explanation
Indices: 86072349--86072421 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
86072339 GTTGTGAGAT
*
86072349 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAGGTGTGCG-ACTTGAAAGTACA
* *
86072378 TGGCACT-GAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAG-GTGTGCGACTTGAAAGTACA
*
86072407 TGGCACTAAGTGTGC
1 TGGCACTAGGTGTGC
86072422 ATGGTTGATG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
28 7 0.19
29 30 0.81
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAGGTGTGCGACTTGAAAGTACA
Found at i:86080484 original size:29 final size:29
Alignment explanation
Indices: 86080451--86080524 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
86080441 GTTGTGAGAT
*
86080451 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAGGTGTGCG-ACTTGAAAGTACA
* *
86080480 TGGCACT-GAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAG-GTGTGCGACTTGAAAGTACA
*
86080509 TGGCACTAAGTGTGCG
1 TGGCACTAGGTGTGCG
86080525 TGGTTGATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
28 7 0.18
29 31 0.82
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAGGTGTGCGACTTGAAAGTACA
Found at i:86087315 original size:47 final size:47
Alignment explanation
Indices: 86087252--86087614 Score: 550
Period size: 47 Copynumber: 7.6 Consensus size: 47
86087242 CCCTTCGGGA
* * *
86087252 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86087299 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86087346 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
86087393 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
86087440 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
86087489 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86087536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86087583 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
86087615 TCAAATATAC
Statistics
Matches: 295, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 228 0.77
49 65 0.22
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:86087512 original size:143 final size:143
Alignment explanation
Indices: 86087252--86087614 Score: 554
Period size: 143 Copynumber: 2.6 Consensus size: 143
86087242 CCCTTCGGGA
** * * *
86087252 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
* *
86087315 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
* *
86087380 TTGGCCATTCGGC
131 TCGGCCATTAGGC
86087393 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACACATACACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
86087457 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCA
65 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCA
*
86087521 CATCGGCTATTAGGC
129 CATCGGCCATTAGGC
* * * *
86087536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
86087601 ACTTTCACATTCAT
66 ACTTTCACATTCAT
86087615 TCAAATATAC
Statistics
Matches: 203, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
140 1 0.00
141 48 0.24
143 152 0.75
144 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (143 bp):
CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:86090868 original size:40 final size:40
Alignment explanation
Indices: 86090824--86091091 Score: 324
Period size: 40 Copynumber: 6.7 Consensus size: 40
86090814 CCAGCATGAT
* ** * * *
86090824 TGCTCTTCGGGACCTAGCCCAAATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
86090864 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
86090904 TGCTCTTCGGAACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
86090944 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
86090984 TGCTCTTCGGAACTTAGTCCGGACACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86091024 TGCTCTTCAGGG-CTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTC-GGGACTTAGCCCGGATACATCACTAGCACGAA
86091064 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
86091092 GTCAAGACCT
Statistics
Matches: 197, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
39 7 0.04
40 188 0.95
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86091040 original size:120 final size:120
Alignment explanation
Indices: 86090824--86091087 Score: 361
Period size: 120 Copynumber: 2.2 Consensus size: 120
86090814 CCAGCATGAT
* ** * *
86090824 TGCTCTTCGGGACCTAGCCCAAATATAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGAACTTAGCACGGACA
* * *
86090889 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCTGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
86090944 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACAAATGCTCTTCGGAACTTAGTC-CGGAC
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGAACTTAG-CACGGAC
* * *
86091008 ACATCACTAGCATGAATGCTCTTCAGG-GCTTAGCCCGGATACATCACTAGCATGAA
65 ACATCACTAGCACGAATGCTCTTC-GGAACTTAGCCCGGATACATCACTAGCACGAA
86091064 TGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGAT
86091088 CATCGTCAAG
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
120 122 0.98
121 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGAACTTAGCACGGACA
CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86091507 original size:40 final size:40
Alignment explanation
Indices: 86091463--86091646 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 40
86091453 GCTATTCGTT
*
86091463 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
86091503 CAAATGCCTTCGGAACTTAACCCGAATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-GTTATAGTAACTCGCA
* * *
86091543 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
** * * * *
86091582 CAAATGCCTTC-GGATCTTAGTACGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
86091623 CAAA-GCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
86091647 ACATCATTCG
Statistics
Matches: 115, Mismatches: 21, Indels: 16
0.76 0.14 0.11
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 70 0.61
41 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:86091631 original size:79 final size:81
Alignment explanation
Indices: 86091463--86091647 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 81
86091453 GCTATTCGTT
* * *
86091463 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACACG
* *
86091527 AATTTAGTAACTCGCAC
65 AATATAGTAACTAGCAC
* * * ** *
86091544 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTACGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACACGA
* *
86091607 ATATGGTCACTTAGCA-
66 ATATAGTAAC-TAGCAC
*
86091623 CAAAGCCTTTGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
86091648 CATCATTCGA
Statistics
Matches: 86, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
79 58 0.67
80 25 0.29
81 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAACTTAACACGA
ATATAGTAACTAGCAC
Found at i:86093811 original size:47 final size:47
Alignment explanation
Indices: 86093748--86094063 Score: 456
Period size: 47 Copynumber: 6.6 Consensus size: 47
86093738 CCCTTCGGGA
* * *
86093748 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86093795 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86093842 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
86093889 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
86093936 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86093985 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86094032 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
86094064 TCAAATATAC
Statistics
Matches: 248, Mismatches: 15, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
46 1 0.00
47 184 0.74
49 62 0.25
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:86093990 original size:96 final size:96
Alignment explanation
Indices: 86093748--86094063 Score: 473
Period size: 96 Copynumber: 3.3 Consensus size: 96
86093738 CCCTTCGGGA
* *
86093748 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
86093811 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
86093842 CTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
86093904 CA-TGTTCACATTCATCACATTGGCCATTCGGC
65 CACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
86093936 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
86094001 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
86094032 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCACATATATATACACTTTCACATTCAT
86094064 TCAAATATAC
Statistics
Matches: 199, Mismatches: 15, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
93 3 0.02
94 88 0.44
96 106 0.53
97 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:86094008 original size:143 final size:141
Alignment explanation
Indices: 86093769--86094040 Score: 438
Period size: 143 Copynumber: 1.9 Consensus size: 141
86093759 TATACACTTC
*
86093769 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
1 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* * * * *
86093834 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
66 CATTAGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
86093899 ATACACATGTT
131 ATACACATGTT
*
86093910 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 CACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCG
*
86093975 GCTATTAGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCA
64 GCCATTAGGCCTTATCACATATATACA-TGTTCACATTCATCACATCGGCCATTAGGCCTTATCA
86094039 CA
128 CA
86094041 TATATATACA
Statistics
Matches: 120, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
141 33 0.28
143 86 0.72
144 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (141 bp):
CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
ATACACATGTT
Found at i:86102337 original size:48 final size:48
Alignment explanation
Indices: 86102196--86102378 Score: 189
Period size: 48 Copynumber: 3.9 Consensus size: 48
86102186 CACATAGTAA
*
86102196 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * * * * *
86102244 GAAGCC---G--ATAGCCTAGCTATGGTCTTACACGATG-TCTCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATG-GGATCACATATC
* * *
86102287 GATGCCAATGCTATATCCCAGATATGCTCTTACATGGGATCAAATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * *
86102335 GATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACA
86102379 CATAACCCTA
Statistics
Matches: 105, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 32 0.30
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 69 0.66
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:86122572 original size:27 final size:27
Alignment explanation
Indices: 86122524--86122682 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
86122514 GCGAGGCTGC
* * *
86122524 CAGATATTGTGAC-GAAGTCACCAAATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
86122551 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
86122577 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
86122604 CATATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
86122631 CAAATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
86122658 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
86122683 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:86122617 original size:54 final size:54
Alignment explanation
Indices: 86122542--86122682 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
86122532 GTGACGAAGT
* * * *
86122542 CACCAAATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
*
86122596 CACCAGATCATATAATCGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
*
86122650 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATCGTGGCATAGCCACCAG
86122683 GACGCTTCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.05
54 75 0.95
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
Found at i:86124328 original size:26 final size:26
Alignment explanation
Indices: 86124297--86124404 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
86124287 TGAAATGCCC
*
86124297 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
86124323 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
86124349 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
86124375 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86124401 ATCA
1 ATCA
86124405 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86129703 original size:27 final size:27
Alignment explanation
Indices: 86129655--86129813 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
86129645 GTGAGGCTGC
* *
86129655 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
86129682 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
86129708 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
86129735 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
86129762 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
86129789 CAGATAATTGTGGCATAGCTACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
86129814 GACGTTTCCT
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:86129748 original size:54 final size:54
Alignment explanation
Indices: 86129673--86129813 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
86129663 GTGACGAAGT
*
86129673 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
86129727 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
86129781 CACCAGATCAGATAATTGTGGCATAGCTACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
86129814 GACGTTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:86131465 original size:26 final size:26
Alignment explanation
Indices: 86131434--86131541 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
86131424 TGAAATGCCC
*
86131434 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
86131460 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
86131486 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
86131512 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86131538 ATCA
1 ATCA
86131542 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86136643 original size:13 final size:13
Alignment explanation
Indices: 86136625--86136649 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86136615 TTTAATTGAA
86136625 AATTTAATAAATT
1 AATTTAATAAATT
86136638 AATTTAATAAAT
1 AATTTAATAAAT
86136650 AATGTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTTAATAAATT
Found at i:86140409 original size:21 final size:20
Alignment explanation
Indices: 86140382--86140433 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
86140372 AGGTCTAAAA
*
86140382 TGTAAACTTTATAAAATATATG
1 TGTAAAC-TAATAAAATA-ATG
86140404 -GTAAACTAATAAAATAATG
1 TGTAAACTAATAAAATAATG
*
86140423 TGTAAAATAAT
1 TGTAAACTAAT
86140434 TTTTAGATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 3 0.11
20 18 0.67
21 6 0.22
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.35
Consensus pattern (20 bp):
TGTAAACTAATAAAATAATG
Found at i:86140898 original size:4 final size:4
Alignment explanation
Indices: 86140891--86140934 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
86140881 TAGATAATTA
86140891 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
86140935 TCTAGTGTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:86146654 original size:21 final size:23
Alignment explanation
Indices: 86146598--86146654 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
86146588 AAATGATGAG
*
86146598 TATTTGATATATATATATTTTAA
1 TATTTTATATATATATATTTTAA
86146621 -ATTATTATATATATAT-TTTTAA
1 TATT-TTATATATATATATTTTAA
86146643 TATTTTAT-TATA
1 TATTTTATATATA
86146655 CTTATATAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 4 0.13
22 13 0.42
23 14 0.45
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTTTATATATATATATTTTAA
Found at i:86148767 original size:28 final size:29
Alignment explanation
Indices: 86148713--86148768 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
86148703 CTACAGGGGT
*
86148713 TTTCACATGGCCAAGCACACGCCCGTGTC
1 TTTCACACGGCCAAGCACACGCCCGTGTC
*
86148742 TTTCACACGGCCTAG-ACACGCCCGTGT
1 TTTCACACGGCCAAGCACACGCCCGTGT
86148769 GCTCACCCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.20, C:0.38, G:0.21, T:0.21
Consensus pattern (29 bp):
TTTCACACGGCCAAGCACACGCCCGTGTC
Found at i:86150298 original size:94 final size:94
Alignment explanation
Indices: 86150175--86150489 Score: 293
Period size: 94 Copynumber: 3.4 Consensus size: 94
86150165 GTGATGTGAG
* *
86150175 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGACGAGTGCTAGTGTAAGACGTG
* *
86150240 TCTAGGACATGCATCAGCCAC-ATTACGAT
65 TCTGGGACATGCATCAGCCACTATAACGAT
* * * *
86150269 AGCCAGTGTAAGACCATGAT-TGGGACATGGCATCGGCGTAGAGATGAGTGCCAATGTAAGACGT
1 AGCCAGTGTAAGACCATG-TCTGGGACATGGCATCGGC-TTGAGACGAGTGCTAGTGTAAGACGT
* ** * * * *
86150333 GTTTGGGACATGCATTTGCCTCAATAATGGT
64 GTCTGGGACATGCATCAGCCACTATAACGAT
* * ** * *
86150364 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGC-TAAG-CTTCGTGCTAGTGTAAAACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAC-GAGTGCTAGTGTAAGACGTG
* *
86150425 CCTGGGACATGCATCAG-CACTTATACACGAG
65 TCTGGGACATGCATCAGCCAC-TATA-ACGAT
* * *
86150456 AGCTAGTGTAAGATCATGTTTGGGACATGGCATC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
86150490 AACAACTTAA
Statistics
Matches: 176, Mismatches: 37, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
90 2 0.01
91 32 0.18
92 14 0.08
93 21 0.12
94 88 0.50
95 19 0.11
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACGAGTGCTAGTGTAAGACGTGT
CTGGGACATGCATCAGCCACTATAACGAT
Found at i:86157282 original size:30 final size:30
Alignment explanation
Indices: 86157248--86157304 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
86157238 TTTTTGAATA
* *
86157248 TAGGGTTAAAATAGTCATTTTGCCAAAACC
1 TAGGGGTAAAATAGTCATTTTACCAAAACC
*
86157278 TAGGGGTAAAATGGTCATTTTACCAAA
1 TAGGGGTAAAATAGTCATTTTACCAAA
86157305 GATGTGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (30 bp):
TAGGGGTAAAATAGTCATTTTACCAAAACC
Found at i:86157760 original size:47 final size:46
Alignment explanation
Indices: 86157644--86157772 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 46
86157634 GGGTTATGTG
*
86157644 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATTGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATTGACA
* * *
86157690 CGAGCGCTAGTGTAAGA-CGTGTCTGGGACATGG-ATCAGCCACATT-ACA
1 AGAGC-C-AGTGTAAGACCATGTCTGGGACATGGCAT-AG--AAATTGACA
*
86157738 ATAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
86157773 TGGCGTAAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
46 15 0.22
47 34 0.49
48 16 0.23
49 4 0.06
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATTGACA
Found at i:86157809 original size:47 final size:48
Alignment explanation
Indices: 86157739--86158012 Score: 147
Period size: 49 Copynumber: 5.8 Consensus size: 48
86157729 CACATTACAA
* * * *
86157739 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGT-AAAGATGAG
1 TAGCCAGTGTAAGA-CGTATCTGGGACATGGCATCGGCCTCAAAGATG-G
* *
86157788 T-GCCAGTTTAAGACGTATCTGGGACAT-GCATCGGCCTCAATGATGG
1 TAGCCAGTGTAAGACGTATCTGGGACATGGCATCGGCCTCAAAGATGG
* * *
86157834 TAGCCAGTGTAAGACGTGTCTGGGACAT-GCATCAG-CT--AAGCT--
1 TAGCCAGTGTAAGACGTATCTGGGACATGGCATCGGCCTCAAAGATGG
* * * * * * * *
86157876 TCATGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCACTTATACACGAG
1 T-A-GCCAGTGTAAGACGTATCTGGGACATGGCATCGGC-CTCAAAGATG-G
* * * * * * *
86157927 -AGCTAGTGTAAGACCGTGTCTAGGACATGGCATCGGCCTCGATGAAGA
1 TAGCCAGTGTAAGA-CGTATCTGGGACATGGCATCGGCCTCAAAGATGG
* * * *
86157975 TAGCTAGTGTAATACCATGTCTGGGACATGGCATCGGC
1 TAGCCAGTGTAAGA-CGTATCTGGGACATGGCATCGGC
86158013 AACTTAACCC
Statistics
Matches: 181, Mismatches: 30, Indels: 28
0.76 0.13 0.12
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 34 0.19
46 14 0.08
47 48 0.27
48 24 0.13
49 52 0.29
50 7 0.04
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
TAGCCAGTGTAAGACGTATCTGGGACATGGCATCGGCCTCAAAGATGG
Found at i:86157809 original size:94 final size:95
Alignment explanation
Indices: 86157646--86157862 Score: 240
Period size: 94 Copynumber: 2.3 Consensus size: 95
86157636 GTTATGTGAG
** * * *
86157646 AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATTGATACGAGCGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATAAAGACGAGCGCCAGTGTAAGACGTA
* *
86157711 TCTGGGACATGGATCAGCCAC-ATTACAAT
66 TCTGGGACATGCATCAGCCACAATGACAAT
* *** * * *
86157740 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGTAAAGATGAGTGCCAGTTTAAGACGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATAAAGACGAGCGCCAGTGTAAGACGTA
* * ***
86157805 TCTGGGACATGCATCGGCCTCAATGATGGT
66 TCTGGGACATGCATCAGCCACAATGACAAT
*
86157835 AGCCAGTGTAAGA-CGTGTCTGGGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATG
86157863 CATCAGCTAA
Statistics
Matches: 102, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
94 85 0.83
95 17 0.17
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATAAAGACGAGCGCCAGTGTAAGACGTA
TCTGGGACATGCATCAGCCACAATGACAAT
Found at i:86157960 original size:141 final size:141
Alignment explanation
Indices: 86157698--86158015 Score: 333
Period size: 141 Copynumber: 2.2 Consensus size: 141
86157688 TACGAGCGCT
* *
86157698 AGTGTAAGACGTGTCTGGGACATGGATCAGCCACATTACAATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACGTGTCTGGGACATGCATCAGCAACATTACAATAGCCAGTGTAAGACCATGTCTGG
* * * * * * *
86157763 GACATGGCATTGGCGTAAAGATGAGTGCCAGTTTAAGACGTATCTGGGACATGCATCGGCCTCAA
66 GACATGGCATAGACGTAAACACGAGAGCCAGTGTAAGACGTATCTAGGACATGCATCGGCCTCAA
* *
86157828 TGATGGTAGCC
131 TGAAGATAGCC
*
86157839 AGTGTAAGACGTGTCTGGGACATGCATCAGCTAAGC-TT-C-AT-GCTAGTGTAAGA-CATGTCT
1 AGTGTAAGACGTGTCTGGGACATGCATCAGC-AA-CATTACAATAGCCAGTGTAAGACCATGTCT
* * * *
86157899 GGGACAT-GCATCAGCACTTATACACGAGAGCTAGTGTAAGACCGTGTCTAGGACATGGCATCGG
64 GGGACATGGCAT-AG-ACGTAAACACGAGAGCCAGTGTAAGA-CGTATCTAGGACAT-GCATCGG
* *
86157963 CCTCGATGAAGATAGCT
125 CCTCAATGAAGATAGCC
* * *
86157980 AGTGTAATACCATGTCTGGGACATGGCATCGGCAAC
1 AGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCAAC
86158016 TTAACCCATG
Statistics
Matches: 148, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
137 4 0.03
138 15 0.10
139 29 0.20
140 14 0.09
141 60 0.41
142 18 0.12
143 8 0.05
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACGTGTCTGGGACATGCATCAGCAACATTACAATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATAGACGTAAACACGAGAGCCAGTGTAAGACGTATCTAGGACATGCATCGGCCTCAA
TGAAGATAGCC
Found at i:86162563 original size:2 final size:2
Alignment explanation
Indices: 86162556--86162626 Score: 106
Period size: 2 Copynumber: 35.5 Consensus size: 2
86162546 CAATCAATAA
* * * *
86162556 AG AG AG AG AG AG GG AG GG AG AG AG AG GG AG AG GG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
86162598 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
86162627 AGTAAATTCG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (2 bp):
AG
Found at i:86165437 original size:26 final size:26
Alignment explanation
Indices: 86165389--86165464 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 26
86165379 ACATATTTTC
* * *
86165389 TCAAAATTTTACGA-TAGGAAAAATTA
1 TCAAAATTTTACTAGT-GGTAAAATCA
*
86165415 TCAAAATTTTACTAGTGGTAAAATCG
1 TCAAAATTTTACTAGTGGTAAAATCA
* * *
86165441 TCAAAATTTTGCTTGGGGTAAAAT
1 TCAAAATTTTACTAGTGGTAAAAT
86165465 AGGGATAAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 41 0.98
27 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACTAGTGGTAAAATCA
Found at i:86168888 original size:24 final size:24
Alignment explanation
Indices: 86168856--86168904 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
86168846 TCATAACTAG
86168856 AATTCAAACACAAGTCAATTATTA
1 AATTCAAACACAAGTCAATTATTA
86168880 AATTCAAACACAAGTCAATTATTA
1 AATTCAAACACAAGTCAATTATTA
86168904 A
1 A
86168905 GCATTCCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.29
Consensus pattern (24 bp):
AATTCAAACACAAGTCAATTATTA
Found at i:86172813 original size:40 final size:40
Alignment explanation
Indices: 86172769--86172909 Score: 178
Period size: 40 Copynumber: 3.5 Consensus size: 40
86172759 GGATATAGCT
* *
86172769 ACTCGCTCGAATGCCTTCGGGACATAGCCCAGATATAGTA
1 ACTCGCACGAATGCCTTCGGGACATAGCCCAGATATAATA
* * *
86172809 ACTCGCACCAATGCCTTCGGGACTTAGCCCAGACATAATA
1 ACTCGCACGAATGCCTTCGGGACATAGCCCAGATATAATA
* * *
86172849 ACTCGCACGGATGCCTTCGGGA-ATTAGCCCGGGTATAATA
1 ACTCGCACGAATGCCTTCGGGACA-TAGCCCAGATATAATA
86172889 ACTCGCAC-AATTGCCTTCGGG
1 ACTCGCACGAA-TGCCTTCGGG
86172910 CTTATCTCGG
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 86 0.99
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACATAGCCCAGATATAATA
Found at i:86172958 original size:79 final size:80
Alignment explanation
Indices: 86172778--86172959 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
86172768 TACTCGCTCG
* * *
86172778 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCAGAC
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAATGCCTTCGGGACTTAGCCCAGAC
* *
86172843 ATAATAACTCGCACG
66 ATAATAACTAGCACA
* * * * * *
86172858 GATGCCTTCGGGAATTAGCCCGGGTATAATAACTCGCA-CAATTGCCTTCGGG-CTTATCTCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAA-TGCCTTCGGGACTTAGCCCAGA
* *
86172921 -ATTAGTCACTAGCACA
65 CA-TAATAACTAGCACA
86172937 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
86172960 TTATCATCCG
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
79 42 0.49
80 42 0.49
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAATGCCTTCGGGACTTAGCCCAGAC
ATAATAACTAGCACA
Found at i:86179384 original size:40 final size:40
Alignment explanation
Indices: 86179333--86179562 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
86179323 GCATATAGCT
*
86179333 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
86179373 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
86179413 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
86179453 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
**
86179493 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGGC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
86179533 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
86179563 CGTTATCATC
Statistics
Matches: 179, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 177 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:86190787 original size:43 final size:43
Alignment explanation
Indices: 86190730--86190859 Score: 163
Period size: 43 Copynumber: 3.0 Consensus size: 43
86190720 GTTAGCGGCG
* *
86190730 TTTCACAAGCGCCGCTAAAGACCACGACTTTTAGCGATG-TTAT
1 TTTCTCAAACGCCGCTAAAGACCACGACTTTTAGCGATGCTT-T
* * * *
86190773 TTTCTCAAACGCCGCAAAAGACCATGACTTTTAGTGGTGCTTT
1 TTTCTCAAACGCCGCTAAAGACCACGACTTTTAGCGATGCTTT
* * *
86190816 TTTCTCAAACGCCACTAAAGACCACGACCTTTAGCGACGCTTT
1 TTTCTCAAACGCCGCTAAAGACCACGACTTTTAGCGATGCTTT
86190859 T
1 T
86190860 CCCGAAAACA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
43 71 0.97
44 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (43 bp):
TTTCTCAAACGCCGCTAAAGACCACGACTTTTAGCGATGCTTT
Found at i:86190877 original size:43 final size:43
Alignment explanation
Indices: 86190741--86190976 Score: 147
Period size: 43 Copynumber: 5.5 Consensus size: 43
86190731 TTCACAAGCG
* * * ** * *
86190741 CCGCTAAAGACCACGACTTTTAGCGATG-TTATTTTCTCAAACG
1 CCGCTAAAGACCATGACCTTTAGCGACGCTT-TTCCCACAAACA
* * * ** ** * *
86190784 CCGCAAAAGACCATGACTTTTAGTGGTGCTTTTTTCTCAAACG
1 CCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCACAAACA
* *
86190827 CCACTAAAGACCACGACCTTTAGCGACGCTTTTCCCGA-AAACA
1 CCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCC-ACAAACA
** ** * *
86190870 CCGCTAAAGGTCATGGTCTTTAGCGGCGCTTTTCCTACAAACA
1 CCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCACAAACA
* * * * *
86190913 CCGCTATAA-AACA-AACCTTTAGTGACGCTTTTCTCACAAACG
1 CCGCTA-AAGACCATGACCTTTAGCGACGCTTTTCCCACAAACA
*
86190955 CCGCTAAAGACCATTACCTTTA
1 CCGCTAAAGACCATGACCTTTA
86190977 AAAAAATATT
Statistics
Matches: 152, Mismatches: 35, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
41 2 0.01
42 31 0.20
43 115 0.76
44 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (43 bp):
CCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCACAAACA
Found at i:86191007 original size:21 final size:21
Alignment explanation
Indices: 86190981--86191041 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 21
86190971 CCTTTAAAAA
86190981 AATATTTTATTTTAATTAAAT
1 AATATTTTATTTTAATTAAAT
*
86191002 AATA-TTTATTTTTATGATAAAT
1 AATATTTTATTTTAAT--TAAAT
* *
86191024 ATTATATTATGTTTAATT
1 AATATTTTAT-TTTAATT
86191042 TTTGAATTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 10 0.31
21 4 0.12
22 9 0.28
23 4 0.12
24 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
AATATTTTATTTTAATTAAAT
Found at i:86195461 original size:3 final size:3
Alignment explanation
Indices: 86195436--86195507 Score: 112
Period size: 3 Copynumber: 24.7 Consensus size: 3
86195426 CTCCTCCCCC
* *
86195436 TCT TC- TCT TCC TCT TCC TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86195483 TCT TCT TCT TCT TCT TCT TC- TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
86195508 AAATCTATTT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
2 4 0.06
3 59 0.94
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:86195967 original size:7 final size:7
Alignment explanation
Indices: 86195955--86195989 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
86195945 ATATGGACTA
86195955 AAATTTT
1 AAATTTT
86195962 AAATTTT
1 AAATTTT
*
86195969 AAATATT
1 AAATTTT
86195976 AAATTTT
1 AAATTTT
*
86195983 AAGTTTT
1 AAATTTT
86195990 TTATTTTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (7 bp):
AAATTTT
Found at i:86196208 original size:7 final size:7
Alignment explanation
Indices: 86196182--86196238 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
86196172 CCATATTTAT
86196182 CCCTAAA
1 CCCTAAA
*
86196189 CACTAAA
1 CCCTAAA
**
86196196 AACTAAA
1 CCCTAAA
86196203 CCCTAAA
1 CCCTAAA
* *
86196210 CCATAAG
1 CCCTAAA
* *
86196217 TCTTAAA
1 CCCTAAA
86196224 CCCTAAA
1 CCCTAAA
86196231 CCCTAAA
1 CCCTAAA
86196238 C
1 C
86196239 TATAAATATA
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.47, C:0.33, G:0.02, T:0.18
Consensus pattern (7 bp):
CCCTAAA
Found at i:86196421 original size:21 final size:22
Alignment explanation
Indices: 86196400--86196443 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
86196390 TCATGAACCC
*
86196400 CTAAC-CCTTAACC-TATAACCC
1 CTAACACCTAAACCTTA-AACCC
86196421 CTAACACCTAAACCTTAAACCC
1 CTAACACCTAAACCTTAAACCC
86196443 C
1 C
86196444 ATCCTTAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 13 0.65
23 2 0.10
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.20
Consensus pattern (22 bp):
CTAACACCTAAACCTTAAACCC
Found at i:86197136 original size:41 final size:41
Alignment explanation
Indices: 86197009--86197139 Score: 163
Period size: 41 Copynumber: 3.2 Consensus size: 41
86196999 GTTATATGAC
* * * * * * *
86197009 TTTTAGTGGCATTTTACCAAAAGCGCTGCCAATGATCCGAT
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGATCTGGT
* * *
86197050 TTTTAGTGGCGTTTTACAAAAAGCGCCGCTAATGATCTAGC
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGATCTGGT
*
86197091 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGTTCTGGT
1 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGATCTGGT
86197132 TTTTAGCG
1 TTTTAGCG
86197140 CCATTTTTGG
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 78 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGATCTGGT
Found at i:86198165 original size:192 final size:192
Alignment explanation
Indices: 86197838--86198228 Score: 773
Period size: 192 Copynumber: 2.0 Consensus size: 192
86197828 TTATTAGCGT
86197838 ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGCAGGTTCTTCACC
1 ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGCAGGTTCTTCACC
*
86197903 ACAACACACTTGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
66 ACAACACACATGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
86197968 TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
131 TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
86198030 ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGCAGGTTCTTCACC
1 ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGCAGGTTCTTCACC
86198095 ACAACACACATGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
66 ACAACACACATGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
86198160 TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
131 TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
86198222 ACATAAA
1 ACATAAA
86198229 TCCGTTAACA
Statistics
Matches: 198, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 198 1.00
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.25
Consensus pattern (192 bp):
ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGCAGGTTCTTCACC
ACAACACACATGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
Found at i:86198329 original size:59 final size:59
Alignment explanation
Indices: 86198257--86198375 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
86198247 CTGGGCGGGG
86198257 TATTACATAAGATTTATAGTGTGACATACCTTACTCTTAAGTGGATTATGGACTATGTA
1 TATTACATAAGATTTATAGTGTGACATACCTTACTCTTAAGTGGATTATGGACTATGTA
* *
86198316 TATTACATAAGATTTATAGTGTGGCATACCTTACTCTTAAGTGGGTTATGGACTATGTA
1 TATTACATAAGATTTATAGTGTGACATACCTTACTCTTAAGTGGATTATGGACTATGTA
86198375 T
1 T
86198376 GCATGACTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (59 bp):
TATTACATAAGATTTATAGTGTGACATACCTTACTCTTAAGTGGATTATGGACTATGTA
Found at i:86205168 original size:38 final size:39
Alignment explanation
Indices: 86205126--86205421 Score: 240
Period size: 38 Copynumber: 7.8 Consensus size: 39
86205116 ACTGACACAA
* * *
86205126 AGCCTAG-TAGGCGCTAAGCTTGAATAACACCGGCATTG
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
*
86205164 AGCCTA-CTAGGCACTAAGCTTGAATAACACCGG-AATG
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
* * *
86205201 AAGCCT-GCTAGGCCCTAAGCCTGAACAACACCAGC-ATG
1 -AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
* * ** *
86205239 AAGCCT-GCTAGCCACTAAGCCTAAATAACACTAGCACTG
1 -AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
* * * * * **
86205278 AGCCT-TCTCGACACTAAGCTTGAATAACACTGGCAAAA
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
*
86205316 AGCCT-GCTAGGCACTAAGCCTGAATAACACAGGTACAA--
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGG--CAATG
* * *
86205354 AGCCTA-CTAGCCACTAAGCCTG-ATAACATCGGCATTG
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
* *
86205391 AGCC-AGCTAGGCAGTAAGCTTGAATAACACC
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACC
86205422 TAATTCAAAT
Statistics
Matches: 212, Mismatches: 34, Indels: 24
0.79 0.13 0.09
Matches are distributed among these distances:
35 2 0.01
36 1 0.00
37 28 0.13
38 176 0.83
39 2 0.01
40 3 0.01
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (39 bp):
AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
Found at i:86205325 original size:114 final size:114
Alignment explanation
Indices: 86205121--86205421 Score: 322
Period size: 114 Copynumber: 2.6 Consensus size: 114
86205111 GATACACTGA
* * * * * * * *
86205121 CACAAAGCCTAGTAGGCGCTAAGCTTGAATAACACCGGCATTGAGCCTACTAGGCACTAAGCTTG
1 CACAAAGCCTACTAGCCACTAAGCCTAAATAACACCAGCACTGAGCCTACTAGACACTAAGCTTG
* *
86205186 AATAACACCGGAATGAAGCCTGCTAGGCCCTAAGCCTGAACAACACCA-G
66 AATAACACCGGAATAAAGCCTGCTAGGCACTAAGCCTGAACAACA-CAGG
** * * * *
86205235 CATGAAGCCTGCTAGCCACTAAGCCTAAATAACACTAGCACTGAGCCTTCTCGACACTAAGCTTG
1 CACAAAGCCTACTAGCCACTAAGCCTAAATAACACCAGCACTGAGCCTACTAGACACTAAGCTTG
* *
86205300 AATAACACTGGCAA-AAAGCCTGCTAGGCACTAAGCCTGAATAACACAGG
66 AATAACACCGG-AATAAAGCCTGCTAGGCACTAAGCCTGAACAACACAGG
* * * * * * *
86205349 TACAAAGCCTACTAGCCACTAAGCCT-GATAACATCGGCATTGAGCC-AGCTAGGCAGTAAGCTT
1 CACAAAGCCTACTAGCCACTAAGCCTAAATAACACCAGCACTGAGCCTA-CTAGACACTAAGCTT
86205412 GAATAACACC
65 GAATAACACC
86205422 TAATTCAAAT
Statistics
Matches: 152, Mismatches: 32, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
113 38 0.25
114 112 0.74
115 2 0.01
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (114 bp):
CACAAAGCCTACTAGCCACTAAGCCTAAATAACACCAGCACTGAGCCTACTAGACACTAAGCTTG
AATAACACCGGAATAAAGCCTGCTAGGCACTAAGCCTGAACAACACAGG
Found at i:86231686 original size:40 final size:40
Alignment explanation
Indices: 86231623--86231882 Score: 375
Period size: 40 Copynumber: 6.6 Consensus size: 40
86231613 ATTCGGATTG
86231623 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
86231662 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
86231702 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
86231742 ATAACCGGGCCAAGTCCCGAAGGCAATTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
86231782 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
86231822 ATAACC-GGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
86231861 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
86231883 TACTTGGTTT
Statistics
Matches: 203, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 2 0.01
39 58 0.29
40 143 0.70
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:86240631 original size:24 final size:24
Alignment explanation
Indices: 86240584--86240631 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
86240574 TGCCGATATA
* **
86240584 TTAGCTCGTAAGATCTTATTGTTT
1 TTAGCTCGTAAGAGCTTACCGTTT
*
86240608 TTAGCTCGTCAGAGCTTACCGTTT
1 TTAGCTCGTAAGAGCTTACCGTTT
86240632 CAGCTCAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (24 bp):
TTAGCTCGTAAGAGCTTACCGTTT
Found at i:86240686 original size:25 final size:25
Alignment explanation
Indices: 86240631--86240695 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
86240621 GCTTACCGTT
86240631 TCAGCTC-AATAGAGCTTACTGTCCA
1 TCAGCTCGAA-AGAGCTTACTGTCCA
*
86240656 TCAGCTCAGAAGGAGCTTACTGAT-CA
1 TCAGCTC-GAAAGAGCTTACTG-TCCA
86240682 T-AGCTCGAAAGAGC
1 TCAGCTCGAAAGAGC
86240696 GGAAATGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
24 7 0.20
25 12 0.34
26 13 0.37
27 3 0.09
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (25 bp):
TCAGCTCGAAAGAGCTTACTGTCCA
Found at i:86240846 original size:20 final size:20
Alignment explanation
Indices: 86240821--86240906 Score: 86
Period size: 20 Copynumber: 4.4 Consensus size: 20
86240811 AAAAGCTATG
86240821 TGTTTATACGGATGAATTAT
1 TGTTTATACGGATGAATTAT
* * *
86240841 TGTTTATATGGATGAAGTAC
1 TGTTTATACGGATGAATTAT
* * *
86240861 TGTTTAAACAGATGAGTTAT
1 TGTTTATACGGATGAATTAT
* *
86240881 AG-TTAT-CGAATGAATTAT
1 TGTTTATACGGATGAATTAT
86240899 TGTTTATA
1 TGTTTATA
86240907 TGATTGAGAG
Statistics
Matches: 49, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
18 10 0.20
19 7 0.14
20 32 0.65
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.43
Consensus pattern (20 bp):
TGTTTATACGGATGAATTAT
Found at i:86250252 original size:13 final size:13
Alignment explanation
Indices: 86250234--86250258 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86250224 TATGTAGGGT
86250234 AAATTATTTACAC
1 AAATTATTTACAC
86250247 AAATTATTTACA
1 AAATTATTTACA
86250259 GATAAGTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATTATTTACAC
Found at i:86268809 original size:63 final size:62
Alignment explanation
Indices: 86268742--86268881 Score: 164
Period size: 59 Copynumber: 2.3 Consensus size: 62
86268732 AAAGATAATC
* * *
86268742 ATATATATTTATATAAATTTCCAAAAT-TAACATGCATTAAACCAATCAAAGCATGTATATAT
1 ATATATATTTATATAAA-TACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
* * * *
86268804 -TATATA-TT-TATACATACGAAACTACAACATGCATTAAACCAATCAAAGCATGCATGTAT
1 ATATATATTTATATAAATACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
86268863 -TATATATTTATATATAATA
1 ATATATATTTATATA-AATA
86268882 AAATATCTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
58 6 0.09
59 43 0.65
60 4 0.06
61 10 0.15
62 3 0.05
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.35
Consensus pattern (62 bp):
ATATATATTTATATAAATACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
Found at i:86272731 original size:40 final size:40
Alignment explanation
Indices: 86272671--86272887 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
86272661 GTATGATAAT
* * *
86272671 CGGGCTAAGTCCCGAGGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
86272711 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
86272751 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
86272791 CGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
86272831 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
*
86272871 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
86272888 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.10
40 148 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:86289063 original size:59 final size:59
Alignment explanation
Indices: 86288971--86289088 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
86288961 TCCCCGAGCT
86288971 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
1 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
86289030 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
1 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
86289089 ACTTAGCTTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.53, C:0.20, G:0.12, T:0.15
Consensus pattern (59 bp):
CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
Found at i:86293578 original size:29 final size:29
Alignment explanation
Indices: 86293545--86293602 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
86293535 ATTGCTTCCG
86293545 TACATCCATTATATCTTCATTTAAAATTA
1 TACATCCATTATATCTTCATTTAAAATTA
86293574 TACATCCATTATATCTTCATTTAAAATTA
1 TACATCCATTATATCTTCATTTAAAATTA
86293603 AATAATATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (29 bp):
TACATCCATTATATCTTCATTTAAAATTA
Found at i:86294202 original size:18 final size:18
Alignment explanation
Indices: 86294179--86294215 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86294169 TAAAAATATA
86294179 TGCTCTTTAAAGATTATT
1 TGCTCTTTAAAGATTATT
86294197 TGCTCTTTAAAGATTATT
1 TGCTCTTTAAAGATTATT
86294215 T
1 T
86294216 TTTCTCCCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (18 bp):
TGCTCTTTAAAGATTATT
Found at i:86297891 original size:24 final size:23
Alignment explanation
Indices: 86297847--86297892 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
86297837 ACTCATATAC
86297847 TACAATTAAATTTTTAGAAAAAT
1 TACAATTAAATTTTTAGAAAAAT
86297870 TACAATTAAATTTTTAGAAAAAT
1 TACAATTAAATTTTTAGAAAAAT
86297893 AGGCAGCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (23 bp):
TACAATTAAATTTTTAGAAAAAT
Found at i:86299326 original size:22 final size:22
Alignment explanation
Indices: 86299301--86299348 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
86299291 TTTCTTGTTG
* *
86299301 TTTT-CTATCTATTTTGTTACCA
1 TTTTACTAT-TATGTTGCTACCA
*
86299323 TTTTACTATTATGTTGCTACTA
1 TTTTACTATTATGTTGCTACCA
86299345 TTTT
1 TTTT
86299349 GTTGTTATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.19, C:0.15, G:0.06, T:0.60
Consensus pattern (22 bp):
TTTTACTATTATGTTGCTACCA
Found at i:86299425 original size:30 final size:30
Alignment explanation
Indices: 86299389--86299447 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
86299379 TATGTTTTTA
86299389 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
*
86299419 TTAATTTTGTTATTATTTTAGAGACATTT
1 TTAATTTTGTTATTATTTTAAAGACATTT
86299448 AATTATTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTG
Found at i:86306512 original size:25 final size:25
Alignment explanation
Indices: 86306484--86306538 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
86306474 TTATTTGTTT
86306484 GCTTATGACTTACTAAGCTATGATA
1 GCTTATGACTTACTAAGCTATGATA
86306509 GCTTATGACTTACTAAGCTATGATA
1 GCTTATGACTTACTAAGCTATGATA
86306534 GCTTA
1 GCTTA
86306539 ATGTGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (25 bp):
GCTTATGACTTACTAAGCTATGATA
Found at i:86307941 original size:27 final size:27
Alignment explanation
Indices: 86307911--86307962 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
86307901 TCAGTAACAA
*
86307911 TGGGCCT-AGCCCATTAATAGAATCATG
1 TGGGCCTAAGCCCATT-ACAGAATCATG
86307938 TGGGCCTAAGCCCATTACAGAATCA
1 TGGGCCTAAGCCCATTACAGAATCA
86307963 GTATCAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (27 bp):
TGGGCCTAAGCCCATTACAGAATCATG
Found at i:86308703 original size:18 final size:17
Alignment explanation
Indices: 86308673--86308715 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
86308663 AATCCGTGTG
* *
86308673 GGGCCCACGAGCCTATT
1 GGGCCCACCAGCCCATT
86308690 GGGCCCACACAGCCCATT
1 GGGCCCAC-CAGCCCATT
86308708 GAGGCCCA
1 G-GGCCCA
86308716 TTGAGGCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.36
18 8 0.36
19 6 0.27
ACGTcount: A:0.21, C:0.40, G:0.28, T:0.12
Consensus pattern (17 bp):
GGGCCCACCAGCCCATT
Found at i:86308827 original size:10 final size:9
Alignment explanation
Indices: 86308798--86308832 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
86308788 TTACACAAGC
*
86308798 GGGCCCATG
1 GGGCCCATT
86308807 GGGCCCATT
1 GGGCCCATT
86308816 GGGCCCATT
1 GGGCCCATT
*
86308825 TGGCCCAT
1 GGGCCCAT
86308833 CGAGGCCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.11, C:0.34, G:0.34, T:0.20
Consensus pattern (9 bp):
GGGCCCATT
Found at i:86328275 original size:43 final size:42
Alignment explanation
Indices: 86328183--86328295 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
86328173 GAGATTTATG
* * * * * *
86328183 TGTAAGACCATGTTTGGGATATTGGCATTGTATATGATTTCG
1 TGTAAGACCCTGTCTGGGATAGTGGCATCGTATATGATTACA
*
86328225 TGTAAGACCCTGTCTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTGGGATAGTGGCATCG-TATATGATTACA
86328268 TGTAAGA-CCTCGTCTGGGAT-GTTGGCAT
1 TGTAAGACCCT-GTCTGGGATAG-TGGCAT
86328296 TTTACAAGCT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
42 30 0.49
43 31 0.51
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.35
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGATAGTGGCATCGTATATGATTACA
Found at i:86328310 original size:86 final size:85
Alignment explanation
Indices: 86328132--86328303 Score: 190
Period size: 86 Copynumber: 2.0 Consensus size: 85
86328122 TCCAATATGT
* ** *
86328132 GATTTCGTGTAAGACCACGTCTGGGACATTGGCATCAATTTGAGATTTATGTGTAAGACCATGTT
1 GATTTCGTGTAAGACCACGTCTGGGACAGTGGCATCAATTT-AGATTTACATGTAAGACCATGTC
* *
86328197 TGGGATATTGGCATTGTATAT
65 TGGGATATTGGCATTGTACAA
*
86328218 GATTTCGTGTAAGACC-CTGTCTGGGATAGTGGCATCGATATTT-GA-TTACATGTAAGACC-TC
1 GATTTCGTGTAAGACCAC-GTCTGGGACAGTGGCATC-A-ATTTAGATTTACATGTAAGACCAT-
* *
86328279 GTCTGGGATGTTGGCATTTTACAA
62 GTCTGGGATATTGGCATTGTACAA
86328303 G
1 G
86328304 CTTTTCGAGC
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
84 1 0.01
85 33 0.45
86 34 0.47
87 1 0.01
88 4 0.05
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (85 bp):
GATTTCGTGTAAGACCACGTCTGGGACAGTGGCATCAATTTAGATTTACATGTAAGACCATGTCT
GGGATATTGGCATTGTACAA
Found at i:86335456 original size:30 final size:30
Alignment explanation
Indices: 86335417--86335485 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
86335407 CATACGGGTA
*
86335417 GACACACGGGCGTGTGTCTAGGTCGTATGT
1 GACACACGGGCGTCTGTCTAGGTCGTATGT
* *
86335447 GACATACGGGCGTCTGTCTAGGTCGTGTGT
1 GACACACGGGCGTCTGTCTAGGTCGTATGT
86335477 GACACACGG
1 GACACACGG
86335486 CTTACCCTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.17, C:0.22, G:0.36, T:0.25
Consensus pattern (30 bp):
GACACACGGGCGTCTGTCTAGGTCGTATGT
Found at i:86336162 original size:12 final size:12
Alignment explanation
Indices: 86336145--86336178 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
86336135 GGCCACACGC
86336145 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
86336157 CCGTGTGCTAGG
1 CCGTGTGCCAGG
86336169 CCGTGTGCCA
1 CCGTGTGCCA
86336179 ATTAAGGGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.32, G:0.38, T:0.21
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:86358794 original size:924 final size:924
Alignment explanation
Indices: 86356801--86360503 Score: 7095
Period size: 924 Copynumber: 4.0 Consensus size: 924
86356791 TAAATTTTAA
86356801 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
1 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
86356866 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
66 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
* *
86356931 TATATTAATAGAATTATGTTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
131 TATATTAATAGAATAATGGTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
86356996 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
196 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
86357061 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
261 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
86357126 GCAATACTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGTAATGCATCATTGCTACC
326 GCAATACTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGTAATGCATCATTGCTACC
86357191 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
391 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
*
86357256 AGTCCTTTATCTCTGGAGTGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
456 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
* *
86357321 TTCTTGATACCTTGAGTAGACTCTGATACATAAATAAGTATGACATCTCATATCAACTTATTTGA
521 TTCTTGATACCCTGAGTAGACTATGATACA-AAATAAGTATGACATCTCATATCAACTTATTTGA
86357386 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
585 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
86357451 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
650 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
86357516 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
715 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
86357581 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
780 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
86357646 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTATTCTCTAACACACA
845 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTATTCTCTAACACACA
86357711 TATTCATGCATTGAT
910 TATTCATGCATTGAT
86357726 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
1 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
86357791 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
66 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
86357856 TATATTAATAGAATAATGGTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
131 TATATTAATAGAATAATGGTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
86357921 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
196 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
86357986 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
261 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
86358051 GCAATACTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGTAATGCATCATTGCTACC
326 GCAATACTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGTAATGCATCATTGCTACC
86358116 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
391 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
86358181 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
456 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
86358246 TTCTTGATACCCTGAGTAGACTATGATATC-AAATAAGTATGACATCTCATATCAACTTATTTGA
521 TTCTTGATACCCTGAGTAGACTATGATA-CAAAATAAGTATGACATCTCATATCAACTTATTTGA
* *
86358310 GCATGGCCATGCATTTCTAGTCTCACTCAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
585 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
86358375 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
650 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
86358440 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
715 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
86358505 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
780 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
86358570 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTATTCTCTAACACACA
845 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTATTCTCTAACACACA
86358635 TATTCATGCATTGAT
910 TATTCATGCATTGAT
86358650 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
1 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
86358715 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
66 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
86358780 TATATTAATAGAATAATGGTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
131 TATATTAATAGAATAATGGTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
86358845 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
196 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
86358910 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
261 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
86358975 GCAATACTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGTAATGCATCATTGCTACC
326 GCAATACTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGTAATGCATCATTGCTACC
86359040 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
391 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
86359105 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
456 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
86359170 TTCTTGATACCCTGAGTAGACTATGATATC-AAATAAGTATGACATCTCATATCAACTTATTTGA
521 TTCTTGATACCCTGAGTAGACTATGATA-CAAAATAAGTATGACATCTCATATCAACTTATTTGA
* * * * *
86359234 GCATGGCCATGCATTTCTAGTCTCACTCAATCAAGTGGCCTAAGATAGTACTCATATTATGTAGG
585 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
* * * *
86359299 AGGGACTTATCCTATATTGATCAACCATATCCCTCTACATAGATTGTGATATATCCAACATCAGC
650 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
*
86359364 CTTTATAAATCAACCAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
715 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
* * *
86359429 GATAATGATGATCTCAAGTCTGAGGATCATATACATATTAATCACTATGAGTAATGTTGTGACAA
780 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
*
86359494 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTGTTCTCTAACACACA
845 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTATTCTCTAACACACA
86359559 TATTCATGCATTGAT
910 TATTCATGCATTGAT
86359574 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
1 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
86359639 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
66 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
* *
86359704 TATATTAATAGAATTATGTTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
131 TATATTAATAGAATAATGGTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
86359769 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
196 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
86359834 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
261 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
*
86359899 GCAATACTAGAATGATTCTAATGTTACAAACAATGAGCGGCATCTAGTAATGCATCATTGCTACC
326 GCAATACTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGTAATGCATCATTGCTACC
86359964 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
391 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
*
86360029 AATCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
456 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
* *
86360094 TTCTTGATACCTTGAGTAGACTCTGATACATAAATAAGTATGACATCTCATATCAACTTATTTGA
521 TTCTTGATACCCTGAGTAGACTATGATACA-AAATAAGTATGACATCTCATATCAACTTATTTGA
86360159 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
585 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
86360224 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
650 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
86360289 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
715 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
*
86360354 GATAATGATAATCTCAAGTCTAAGGATCTTATACGTATTAATCACTATGAGTAATGTTGTGACAA
780 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
*
86360419 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTGTTCTCTAACACACA
845 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTATTCTCTAACACACA
86360484 TATTCATGCATTGAT
910 TATTCATGCATTGAT
86360499 TCTGA
1 TCTGA
86360504 CACTCCATAT
Statistics
Matches: 2736, Mismatches: 39, Indels: 6
0.98 0.01 0.00
Matches are distributed among these distances:
923 1 0.00
924 1826 0.67
925 908 0.33
926 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (924 bp):
TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
TATATTAATAGAATAATGGTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
GCAATACTAGAATGATTCTAATGTTACAAACAATGAGTGGCATCTAGTAATGCATCATTGCTACC
TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
TTCTTGATACCCTGAGTAGACTATGATACAAAATAAGTATGACATCTCATATCAACTTATTTGAG
CATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAGA
GGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGCC
TTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGGG
ATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAAT
TACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTATTCTCTAACACACAT
ATTCATGCATTGAT
Found at i:86361179 original size:20 final size:20
Alignment explanation
Indices: 86361116--86361179 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
86361106 CAATCTCAAT
* *
86361116 CATATAAACAGTAATTCATT
1 CATATAAACAGTACTTCATC
* *
86361136 CA-AT-AACAGAAAC-TCCTC
1 CATATAAACAG-TACTTCATC
*
86361154 CTTATAAACAGTACTTCATC
1 CATATAAACAGTACTTCATC
86361174 CATATA
1 CATATA
86361180 TCAGTAATTC
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 9 0.28
19 7 0.22
20 16 0.50
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (20 bp):
CATATAAACAGTACTTCATC
Found at i:86361340 original size:23 final size:22
Alignment explanation
Indices: 86361314--86361411 Score: 72
Period size: 24 Copynumber: 4.1 Consensus size: 22
86361304 CAGTAAGCTC
* *
86361314 CTCTTGAGCTGATAGATAGTAAG
1 CTCTTGAGCTGA-AAACAGTAAG
*
86361337 CTCTATTGAGCTG-AAACGGTAAG
1 CTC--TTGAGCTGAAAACAGTAAG
*
86361360 CTCTGACGAGCTGAAAACAGTAAG
1 CTCT--TGAGCTGAAAACAGTAAG
86361384 CTCTTACGAGCTGATAAATCAGTAAG
1 CTCTT--GAGCTGA-AAA-CAGTAAG
86361410 CT
1 CT
86361412 TATATGAGCT
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
21 1 0.02
23 19 0.32
24 20 0.33
25 11 0.18
26 9 0.15
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (22 bp):
CTCTTGAGCTGAAAACAGTAAG
Found at i:86361382 original size:24 final size:23
Alignment explanation
Indices: 86361331--86361411 Score: 92
Period size: 24 Copynumber: 3.3 Consensus size: 23
86361321 GCTGATAGAT
*
86361331 AGTAAGCTCTATTGAGCTG-AAAC
1 AGTAAGCTCTA-CGAGCTGAAAAC
*
86361354 GGTAAGCTCTGACGAGCTGAAAAC
1 AGTAAGCTCT-ACGAGCTGAAAAC
86361378 AGTAAGCTCTTACGAGCTGATAAATC
1 AGTAAGCTC-TACGAGCTGA-AAA-C
86361404 AGTAAGCT
1 AGTAAGCT
86361412 TATATGAGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
23 15 0.30
24 22 0.44
25 4 0.08
26 9 0.18
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (23 bp):
AGTAAGCTCTACGAGCTGAAAAC
Found at i:86361420 original size:26 final size:24
Alignment explanation
Indices: 86361304--86361422 Score: 93
Period size: 26 Copynumber: 4.8 Consensus size: 24
86361294 AAGCTATGAT
*
86361304 CAGTAAGCTCCTCT-TGAGCTGATAGA
1 CAGTAAGCT-CT-TATGAGCTGA-AAA
*
86361330 TAGTAAGCTC-TATTGAGCTG-AAA
1 CAGTAAGCTCTTA-TGAGCTGAAAA
* * *
86361353 CGGTAAGCTCTGACGAGCTGAAAA
1 CAGTAAGCTCTTATGAGCTGAAAA
*
86361377 CAGTAAGCTCTTACGAGCTGATAAA
1 CAGTAAGCTCTTATGAGCTGA-AAA
86361402 TCAGTAAGCT-TATATGAGCTG
1 -CAGTAAGCTCT-TATGAGCTG
86361423 CGGTGAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
23 17 0.22
24 23 0.30
25 12 0.16
26 25 0.32
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (24 bp):
CAGTAAGCTCTTATGAGCTGAAAA
Found at i:86363400 original size:19 final size:16
Alignment explanation
Indices: 86363355--86363401 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
86363345 GTTTTATCTA
86363355 TTTTG-TTTTCTTTTT
1 TTTTGTTTTTCTTTTT
86363370 TTTTGTTGTTTCTTTTCT
1 TTTTGTT-TTTCTTTT-T
86363388 TTTCTGTATTTTCT
1 TTT-TGT-TTTTCT
86363402 ATGTTTGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 5 0.19
16 1 0.04
17 8 0.30
18 4 0.15
19 8 0.30
20 1 0.04
ACGTcount: A:0.02, C:0.11, G:0.09, T:0.79
Consensus pattern (16 bp):
TTTTGTTTTTCTTTTT
Found at i:86365963 original size:21 final size:23
Alignment explanation
Indices: 86365948--86365993 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
86365938 ATTGAATTGT
86365948 TTCATATTCTTTTTGAATAGGTAAA
1 TTCATATTCTTTTTGAATAGGT--A
86365973 TTCATATTCTTTTTGAATAGG
1 TTCATATTCTTTTTGAATAGG
86365994 CAAACTCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (23 bp):
TTCATATTCTTTTTGAATAGGTA
Found at i:86366008 original size:24 final size:25
Alignment explanation
Indices: 86365949--86366009 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
86365939 TTGAATTGTT
* * *
86365949 TCATATTCTTTTTGAATAGGTAAAT
1 TCATATCCTTTTTGAATAGGCAAAC
*
86365974 TCATATTCTTTTTGAATAGGCAAAC
1 TCATATCCTTTTTGAATAGGCAAAC
*
86365999 TCCT-TCCTTTT
1 TCATATCCTTTT
86366010 GTTTTTATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 6 0.19
25 26 0.81
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.48
Consensus pattern (25 bp):
TCATATCCTTTTTGAATAGGCAAAC
Found at i:86366606 original size:15 final size:15
Alignment explanation
Indices: 86366580--86366615 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
86366570 AAAGGAAAAT
*
86366580 AATTTAAAAACTTAA
1 AATTTGAAAACTTAA
*
86366595 ATTTTGAAAACTTAA
1 AATTTGAAAACTTAA
86366610 AATTTG
1 AATTTG
86366616 GAGAAACGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTGAAAACTTAA
Found at i:86366975 original size:23 final size:23
Alignment explanation
Indices: 86366848--86366967 Score: 138
Period size: 23 Copynumber: 5.3 Consensus size: 23
86366838 AACTATAGAA
* *
86366848 AATATTCACTATTCATGCTAGAG
1 AATATTTACTATTCATGCCAGAG
*
86366871 AATATTTACTGTTCATGCCAGAG
1 AATATTTACTATTCATGCCAGAG
* * *
86366894 AAT-CTTAATGATT-TTGCCAGAG
1 AATATTTACT-ATTCATGCCAGAG
*
86366916 -ATTTTTACTATTCATGCCAGAG
1 AATATTTACTATTCATGCCAGAG
*
86366938 AATATTTACTATTCATGCTAGAG
1 AATATTTACTATTCATGCCAGAG
86366961 AATATTT
1 AATATTT
86366968 GTTGTTCACT
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
21 5 0.06
22 24 0.30
23 52 0.64
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (23 bp):
AATATTTACTATTCATGCCAGAG
Found at i:86373835 original size:42 final size:42
Alignment explanation
Indices: 86373643--86373843 Score: 152
Period size: 42 Copynumber: 4.6 Consensus size: 42
86373633 AGATGCCAAT
* * * *
86373643 GCCATATCCTAGATATGGTCTTACATGGGATCACATATCGAT
1 GCCATATCCCAGATATGGTCTTACACGGGATCACATATTGAG
* * * * * * *
86373685 GCCAATAGCCAAGCTATGATCTTACACGATG-TCTCATATTGAT
1 GCC-ATATCCCAGATATGGTCTTACACG-GGATCACATATTGAG
* * * **
86373728 GCCATGTCCCAGACATGGTATTACACGAAATCACATATTGATG
1 GCCATATCCCAGATATGGTCTTACACGGGATCACATATTGA-G
* *
86373771 CCAATGCCATATCCCAGATATGGTCTTACATGGGATCAAATATTGAG
1 -----GCCATATCCCAGATATGGTCTTACACGGGATCACATATTGAG
*
86373818 GCCATATCCTAGATATGGTCTTACAC
1 GCCATATCCCAGATATGGTCTTACAC
86373844 AAAACCGCAC
Statistics
Matches: 122, Mismatches: 28, Indels: 18
0.73 0.17 0.11
Matches are distributed among these distances:
42 54 0.44
43 32 0.26
44 1 0.01
47 1 0.01
48 34 0.28
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACACGGGATCACATATTGAG
Found at i:86377233 original size:16 final size:17
Alignment explanation
Indices: 86377214--86377246 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
86377204 TGTCGATTCA
86377214 TGACATTG-TCTTCTCT
1 TGACATTGTTCTTCTCT
86377230 TGACATTGTTCTTCTCT
1 TGACATTGTTCTTCTCT
86377247 GCACTAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.24, G:0.12, T:0.52
Consensus pattern (17 bp):
TGACATTGTTCTTCTCT
Found at i:86396043 original size:18 final size:20
Alignment explanation
Indices: 86396005--86396049 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
86395995 AACAATTAAT
*
86396005 AATTAATATTATGCATATTA
1 AATTATTATTATGCATATTA
86396025 AATTATTATT-TGC-TATTA
1 AATTATTATTATGCATATTA
*
86396043 ATTTATT
1 AATTATT
86396050 GAAATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 11 0.48
19 3 0.13
20 9 0.39
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
AATTATTATTATGCATATTA
Found at i:86396045 original size:17 final size:19
Alignment explanation
Indices: 86396004--86396045 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
86395994 TAACAATTAA
86396004 TAATTAATATTATGCATAT
1 TAATTAATATTATGCATAT
*
86396023 TAAATTATTATT-TGC-TAT
1 T-AATTAATATTATGCATAT
86396041 TAATT
1 TAATT
86396046 TATTGAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 4 0.19
19 4 0.19
20 9 0.43
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (19 bp):
TAATTAATATTATGCATAT
Found at i:86396142 original size:16 final size:15
Alignment explanation
Indices: 86396117--86396150 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
86396107 AAAGTTGATA
*
86396117 ATAATTAATATATATT
1 ATAATAAATATA-ATT
86396133 ATAATAAATATAATT
1 ATAATAAATATAATT
86396148 ATA
1 ATA
86396151 TATCAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:86396150 original size:22 final size:19
Alignment explanation
Indices: 86396114--86396153 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 19
86396104 TGCAAAGTTG
86396114 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
86396133 ATAATAAATATAATTATATAT
1 ATAAT-AAT-TAA-TATATAT
86396154 CAGTTATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 3 0.17
21 3 0.17
22 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:86413862 original size:202 final size:202
Alignment explanation
Indices: 86413516--86413915 Score: 800
Period size: 202 Copynumber: 2.0 Consensus size: 202
86413506 ATCAGATATT
86413516 TCAAACTTTTATGATCTGAATAAACATGGCATTTCTCACAAAAAAAATAATGGCGCCAAATCTTT
1 TCAAACTTTTATGATCTGAATAAACATGGCATTTCTCACAAAAAAAATAATGGCGCCAAATCTTT
86413581 AATGCAAACACAATGGCTGCTAAATCTAAATCGTGTGTTGGGTAATTATTTTTATGCGGCTTCAA
66 AATGCAAACACAATGGCTGCTAAATCTAAATCGTGTGTTGGGTAATTATTTTTATGCGGCTTCAA
86413646 CTCTCTCGAGGCATAAGTTATGAATTTGCTTTCTTGCATCAAAACACAGCCCAGACCATTCAACG
131 CTCTCTCGAGGCATAAGTTATGAATTTGCTTTCTTGCATCAAAACACAGCCCAGACCATTCAACG
86413711 ATGAATC
196 ATGAATC
86413718 TCAAACTTTTATGATCTGAATAAACATGGCATTTCTCACAAAAAAAATAATGGCGCCAAATCTTT
1 TCAAACTTTTATGATCTGAATAAACATGGCATTTCTCACAAAAAAAATAATGGCGCCAAATCTTT
86413783 AATGCAAACACAATGGCTGCTAAATCTAAATCGTGTGTTGGGTAATTATTTTTATGCGGCTTCAA
66 AATGCAAACACAATGGCTGCTAAATCTAAATCGTGTGTTGGGTAATTATTTTTATGCGGCTTCAA
86413848 CTCTCTCGAGGCATAAGTTATGAATTTGCTTTCTTGCATCAAAACACAGCCCAGACCATTCAACG
131 CTCTCTCGAGGCATAAGTTATGAATTTGCTTTCTTGCATCAAAACACAGCCCAGACCATTCAACG
86413913 ATG
196 ATG
86413916 CATCACTATA
Statistics
Matches: 198, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 198 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (202 bp):
TCAAACTTTTATGATCTGAATAAACATGGCATTTCTCACAAAAAAAATAATGGCGCCAAATCTTT
AATGCAAACACAATGGCTGCTAAATCTAAATCGTGTGTTGGGTAATTATTTTTATGCGGCTTCAA
CTCTCTCGAGGCATAAGTTATGAATTTGCTTTCTTGCATCAAAACACAGCCCAGACCATTCAACG
ATGAATC
Found at i:86419267 original size:28 final size:28
Alignment explanation
Indices: 86419234--86419305 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
86419224 CTATATATGT
86419234 ATATGGCACTTAGTGTGCAAAATATT-A
1 ATATGGCACTTAGTGTGCAAAATATTGA
* ***
86419261 ATAATGGCACTTGGTGTGCGGGATATTGA
1 AT-ATGGCACTTAGTGTGCAAAATATTGA
*
86419290 GTATGGCACTTAGTGT
1 ATATGGCACTTAGTGT
86419306 ACGAGACATT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 2 0.05
28 33 0.89
29 2 0.05
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (28 bp):
ATATGGCACTTAGTGTGCAAAATATTGA
Found at i:86419316 original size:28 final size:28
Alignment explanation
Indices: 86419264--86419317 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
86419254 AATATTAATA
* * * *
86419264 ATGGCACTTGGTGTGCGGGATATTGAGT
1 ATGGCACTTAGTGTACGAGACATTGAGT
86419292 ATGGCACTTAGTGTACGAGACATTGA
1 ATGGCACTTAGTGTACGAGACATTGA
86419318 AGATGCAACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAGACATTGAGT
Found at i:86429576 original size:53 final size:55
Alignment explanation
Indices: 86429453--86429576 Score: 137
Period size: 53 Copynumber: 2.3 Consensus size: 55
86429443 ATTTAAGGAC
* * **
86429453 ACCATATAAGACCATGCCAAGGCATGATAATTGGTAAGGTTTCTAAGGCAAAGGT
1 ACCATGTAAGACCATGCCAAGGCATGAGAATTGGTAAGGTTAATAAGGCAAAGGT
* * * *
86429508 CCCATGAAAGACCATGCCAAGGCATG-GCATTGGTGA-GTTAATAAGGC-AAGGAT
1 ACCATGTAAGACCATGCCAAGGCATGAGAATTGGTAAGGTTAATAAGGCAAAGG-T
*
86429561 ATCATGTAAGACCATG
1 ACCATGTAAGACCATG
86429577 TTGAGACATG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.07
53 23 0.40
54 7 0.12
55 23 0.40
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (55 bp):
ACCATGTAAGACCATGCCAAGGCATGAGAATTGGTAAGGTTAATAAGGCAAAGGT
Found at i:86429798 original size:18 final size:18
Alignment explanation
Indices: 86429775--86429811 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86429765 GAAAAAGGTA
86429775 AGTATATAATGTTCATGT
1 AGTATATAATGTTCATGT
86429793 AGTATATAATGTTCATGT
1 AGTATATAATGTTCATGT
86429811 A
1 A
86429812 TGCTTGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.43
Consensus pattern (18 bp):
AGTATATAATGTTCATGT
Found at i:86429878 original size:16 final size:16
Alignment explanation
Indices: 86429857--86429887 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86429847 ACAAATTTGA
86429857 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
86429873 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
86429888 AGTGAAGACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:86432564 original size:46 final size:46
Alignment explanation
Indices: 86432514--86432613 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
86432504 TTGAGACGTG
*
86432514 GCATCGGCATTAAGA-CT-AGTGCTAGTGTAAGACATGTCTAGGACAT
1 GCATCGGCATCAAGATCTAAGT-C-AGTGTAAGACATGTCTAGGACAT
* * * *
86432560 GCATCGGCCTCGAGATGTAAGTCAGTGTAAGACATGTCTGGGACAT
1 GCATCGGCATCAAGATCTAAGTCAGTGTAAGACATGTCTAGGACAT
86432606 GCATCGGC
1 GCATCGGC
86432614 TATGAGATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 42 0.89
47 2 0.04
48 3 0.06
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GCATCGGCATCAAGATCTAAGTCAGTGTAAGACATGTCTAGGACAT
Found at i:86432621 original size:46 final size:44
Alignment explanation
Indices: 86432537--86432657 Score: 154
Period size: 46 Copynumber: 2.7 Consensus size: 44
86432527 GACTAGTGCT
*
86432537 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT--GTC
*
86432583 AGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTGTC
* *
86432627 GGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
86432658 ACACAGATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
44 11 0.16
45 15 0.22
46 42 0.62
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTGTC
Found at i:86446052 original size:16 final size:16
Alignment explanation
Indices: 86446031--86446082 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
86446021 TTTGGTTCGC
86446031 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
86446047 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
86446063 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
86446079 TGTA
1 TGTA
86446083 ATAGCAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:86446406 original size:157 final size:157
Alignment explanation
Indices: 86446212--86446521 Score: 548
Period size: 157 Copynumber: 2.0 Consensus size: 157
86446202 CCCTTAGCAT
*
86446212 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
86446277 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
86446342 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
* * *
86446369 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
86446434 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
86446499 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
86446522 ATATTCTTAT
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 145 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:86446518 original size:82 final size:81
Alignment explanation
Indices: 86446275--86446524 Score: 186
Period size: 76 Copynumber: 3.1 Consensus size: 81
86446265 TATTATTATC
* * *
86446275 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTAT-ATTAAAATATAT
86446340 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
* * * * *
86446357 AATAATTACCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT-TTAAAT
1 AATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATATTAAAA
* * * * *
86446411 TTTGATAAGATT-AT-TAA-TATG
60 TAT-ATAA-TTTAATAAAATTCTT
86446432 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATA-TTAAAATATAT
86446497 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
*
86446514 AATAATTAATA
1 AATAATAAATA
86446525 TTCTTATATG
Statistics
Matches: 121, Mismatches: 24, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 10 0.08
76 21 0.17
77 6 0.05
78 8 0.07
79 8 0.07
80 6 0.05
81 21 0.17
82 20 0.17
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (81 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATATTAAAATATATA
ATTTAATAAAATTCTT
Found at i:86446595 original size:157 final size:155
Alignment explanation
Indices: 86446258--86446579 Score: 349
Period size: 157 Copynumber: 2.0 Consensus size: 155
86446248 TTAAATTTTA
* * * *
86446258 ATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * * * * ** *
86446323 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTACCAGAAATTTGTTTTGGTAAATT
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATC
* * * * *
86446388 ATTATTGTTATTGTTATTTAAATTTTG
131 ATAATTATTATTGATATATAAA--TAG
* *
86446415 ATAAGATTATTAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * **
86446480 TTATACTTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCA
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-A
86446545 AATCATAATATATTATATGATACTATAAA-AG
127 AATCATAAT-TATTAT-TGATA-TATAAATAG
86446576 ATAA
1 ATAA
86446580 TTTGAAATAA
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
157 102 0.74
159 4 0.03
160 4 0.03
161 13 0.09
162 5 0.04
163 4 0.03
164 5 0.04
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (155 bp):
ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATC
ATAATTATTATTGATATATAAATAG
Found at i:86447416 original size:13 final size:13
Alignment explanation
Indices: 86447398--86447427 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
86447388 CAATCAGCTA
86447398 AATTCAGAAAAAC
1 AATTCAGAAAAAC
86447411 AATTCAGAAAAAC
1 AATTCAGAAAAAC
86447424 AATT
1 AATT
86447428 ACATGACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (13 bp):
AATTCAGAAAAAC
Found at i:86451004 original size:27 final size:28
Alignment explanation
Indices: 86450973--86451061 Score: 92
Period size: 28 Copynumber: 3.1 Consensus size: 28
86450963 TTGGGAAAAA
*
86450973 ATTAATAGGGTGTT-GGGTTAGAAATCG
1 ATTAATAGGGTGTTAGGGTTAGAAATTG
* *
86451000 ATTAACAAGGTTGATATAGGGTTAGAAATTTG
1 ATTAA-TAGGGTG-T-TAGGGTTAGAAA-TTG
*
86451032 ATTAATAGGGT-TTAGCGTTAGAAATTG
1 ATTAATAGGGTGTTAGGGTTAGAAATTG
86451059 ATT
1 ATT
86451062 GATATATTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
27 11 0.22
28 16 0.31
29 2 0.04
30 1 0.02
31 14 0.27
32 7 0.14
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (28 bp):
ATTAATAGGGTGTTAGGGTTAGAAATTG
Found at i:86454265 original size:47 final size:46
Alignment explanation
Indices: 86454156--86454421 Score: 213
Period size: 47 Copynumber: 5.7 Consensus size: 46
86454146 TGATTTGTGC
* * * **
86454156 GCCAATGTAAGACATGTCTGGGATATGCTTCGGCACA-TTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGAGA
*
86454201 GCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGAGATGAGA
* *
86454249 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGACAGAGAT---A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C---ACAGAGATGAGA
* * * *
86454296 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGAG-T-TGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGAGA
* * * * *
86454340 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AG-AGATGAGA
* *
86454388 GCCAATGTAAGACCATGTTTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
86454422 ACAATATATC
Statistics
Matches: 178, Mismatches: 27, Indels: 27
0.77 0.12 0.12
Matches are distributed among these distances:
42 1 0.01
43 5 0.03
44 30 0.17
45 12 0.07
46 22 0.12
47 54 0.30
48 27 0.15
49 14 0.08
50 13 0.07
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGAGA
Found at i:86454358 original size:91 final size:95
Alignment explanation
Indices: 86454200--86454370 Score: 271
Period size: 91 Copynumber: 1.8 Consensus size: 95
86454190 ACATTATGAG
*
86454200 AGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAGACATG
1 AGCCAGTGTAAGATCATGTCTGGGACATCGCATCGGCACAGAGATGAGTGCTAGTGTAAGACATG
86454265 TTTGGGACATGCATCGGCCTTGACAGAGAT
66 TTTGGGACATGCATCGGCCTTGACAGAGAT
* *
86454295 AGCCAGTGTAAGA-CGTGTCTGGGACA-CGCATCGGCTA-AGAG-T-TGTGCTAGTGTAAGACAT
1 AGCCAGTGTAAGATCATGTCTGGGACATCGCATCGGC-ACAGAGATGAGTGCTAGTGTAAGACAT
86454355 GTTTGGGACATGCATC
65 GTTTGGGACATGCATC
86454371 AGCACGCGTA
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
91 33 0.46
92 1 0.01
93 12 0.17
94 13 0.18
95 13 0.18
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (95 bp):
AGCCAGTGTAAGATCATGTCTGGGACATCGCATCGGCACAGAGATGAGTGCTAGTGTAAGACATG
TTTGGGACATGCATCGGCCTTGACAGAGAT
Done.