Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 265 of 316
Found at i:87587662 original size:41 final size:41
Alignment explanation
Indices: 87587552--87587699 Score: 122
Period size: 41 Copynumber: 3.6 Consensus size: 41
87587542 ACTGGAGTGT
** * * * * *
87587552 AAACAGGGGCGCGTATGTGCAATTCA-AGGTACCGAAGTCC
1 AAACAGGGGCAAGTATCTACAATTCAGGGGTATCGAAGTAC
* * *
87587592 AAATAGGGGCACA-TATGTGA-AATTCAGGGGTATCGAATTAC
1 AAACAGGGGCA-AGTATCT-ACAATTCAGGGGTATCGAAGTAC
*
87587633 AAACAGGGGCAAGTATCTACAATTTAGGGGTATCGAAGTAC
1 AAACAGGGGCAAGTATCTACAATTCAGGGGTATCGAAGTAC
* * * *
87587674 GAACAGGGGCATGTATTTGCAATTCA
1 AAACAGGGGCAAGTATCTACAATTCA
87587700 TAGAATAATT
Statistics
Matches: 86, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
40 22 0.26
41 64 0.74
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (41 bp):
AAACAGGGGCAAGTATCTACAATTCAGGGGTATCGAAGTAC
Found at i:87598420 original size:6 final size:6
Alignment explanation
Indices: 87598409--87598436 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
87598399 GGTTTTCTCC
87598409 AAAATG AAAATG AAAATG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAA
87598437 ATTTGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:87598970 original size:120 final size:120
Alignment explanation
Indices: 87598774--87599000 Score: 355
Period size: 120 Copynumber: 1.9 Consensus size: 120
87598764 AAGAGGTCTG
*
87598774 ATAGCACCTTATTTAATAAGGGGGACAAAAAACCCTAGTAAAATTAACTAGGGTTGTCACCCCCT
1 ATAGCACCTTATTTAATAAGGGAGACAAAAAACCCTAGTAAAATTAACTAGGGTTGTCACCCCCT
*
87598839 ACAACCTAGTTGAACTAGGATTCCATTTTTCTAGTTGAAATATGGAGGAGGTCCA
66 ACAACCTAGTTGAAATAGGATTCCATTTTTCTAGTTGAAATATGGAGGAGGTCCA
* ** * * * *
87598894 ATAGCCCCTTATTTAATAAGGGAGACAGCAAGCCCTAGTATAATTAACTTGGGTTGTTACCCCCT
1 ATAGCACCTTATTTAATAAGGGAGACAAAAAACCCTAGTAAAATTAACTAGGGTTGTCACCCCCT
* *
87598959 ACAACCTAGTTGAAATAGGATTTCGTTTTTCTAGTTGAAATA
66 ACAACCTAGTTGAAATAGGATTCCATTTTTCTAGTTGAAATA
87599001 AACTTCTATA
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 96 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (120 bp):
ATAGCACCTTATTTAATAAGGGAGACAAAAAACCCTAGTAAAATTAACTAGGGTTGTCACCCCCT
ACAACCTAGTTGAAATAGGATTCCATTTTTCTAGTTGAAATATGGAGGAGGTCCA
Found at i:87606136 original size:44 final size:45
Alignment explanation
Indices: 87606063--87606156 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 45
87606053 TAGAATTCCA
* * * *
87606063 ATATGTGTTTTTGTGTAAGATCACGTCTGGGACATTGGCATCGTT
1 ATATGCGTTTTTGTGTAAGACCACATCTGGGACATTGGCATCGAT
**
87606108 ATATGCGTTTTT-TGTAAGACCACATCTGGGATGTTGGCATCGAT
1 ATATGCGTTTTTGTGTAAGACCACATCTGGGACATTGGCATCGAT
87606152 ATATG
1 ATATG
87606157 TGGTTACATG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 32 0.74
45 11 0.26
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (45 bp):
ATATGCGTTTTTGTGTAAGACCACATCTGGGACATTGGCATCGAT
Found at i:87606182 original size:45 final size:44
Alignment explanation
Indices: 87606076--87606238 Score: 138
Period size: 44 Copynumber: 3.8 Consensus size: 44
87606066 TGTGTTTTTG
* * ***
87606076 TGTAAGATCACGTCTGGGACATTGGCATCGTTATATGCGTTTTT
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATATGCGTTACA
* ** *
87606120 TGTAAGACCACATCTGGGATGTTGGCATCGATATATGTGGTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATATG-CGTTACA
* * * * *
87606165 TGTAAGACCATGTCTGGGACATCGACATCG-TAT-TG-ATT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATATGCGTTACA
*
87606205 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATAT
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATAT
87606239 GAGATAGCAT
Statistics
Matches: 95, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
40 26 0.27
41 5 0.05
43 2 0.02
44 35 0.37
45 27 0.28
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATATGCGTTACA
Found at i:87612464 original size:17 final size:17
Alignment explanation
Indices: 87612442--87612477 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
87612432 GGCAAGGATT
87612442 AACTCACTTGGTGAAAC
1 AACTCACTTGGTGAAAC
87612459 AACTCACTTGGTGAAAC
1 AACTCACTTGGTGAAAC
87612476 AA
1 AA
87612478 TTATGGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (17 bp):
AACTCACTTGGTGAAAC
Found at i:87620230 original size:18 final size:18
Alignment explanation
Indices: 87620206--87620396 Score: 97
Period size: 19 Copynumber: 10.3 Consensus size: 18
87620196 AAGAAACATT
87620206 ATCAGAA-CTAGAATCAAA
1 ATCAGAATC-AGAATCAAA
*
87620224 ATGAGAATCAGAATCAAA
1 ATCAGAATCAGAATCAAA
*
87620242 ATCAGAATCAG-GTGACAAA
1 ATCAGAATCAGAAT--CAAA
* * *
87620261 ATTAAAATCAGAATCAGA
1 ATCAGAATCAGAATCAAA
* *
87620279 ATCAGAATTAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAAA
* *
87620298 ATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCA--AA
*
87620318 A-CAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAAA
* *
87620335 ACCAGAATCAGAATTAAGTA
1 ATCAGAATCAGAATCAA--A
* **
87620355 A-CAGAATCAAAATCAGT
1 ATCAGAATCAGAATCAAA
*
87620372 ATCAGGTAAT-AGAATCAGA
1 ATCA-G-AATCAGAATCAAA
87620391 ATCAGA
1 ATCAGA
87620397 GTGTGAATGC
Statistics
Matches: 135, Mismatches: 23, Indels: 31
0.71 0.12 0.16
Matches are distributed among these distances:
17 6 0.04
18 54 0.40
19 65 0.48
20 10 0.07
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAAA
Found at i:87620236 original size:6 final size:6
Alignment explanation
Indices: 87620206--87620396 Score: 124
Period size: 6 Copynumber: 31.0 Consensus size: 6
87620196 AAGAAACATT
* * *
87620206 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
87620253 GTGACAAA ATTAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
87620304 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAAGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA A-TCAG-A
* *
87620355 A-CAGA ATCAAA ATCAGT ATCAGGTA AT-AGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
87620397 GTGTGAATGC
Statistics
Matches: 144, Mismatches: 24, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
5 11 0.08
6 112 0.78
7 13 0.09
8 8 0.06
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:87620270 original size:37 final size:37
Alignment explanation
Indices: 87620220--87620291 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
87620210 GAACTAGAAT
*
87620220 CAAAATGAGAATCAGAATCAAAATCAGAATCAGGTGA
1 CAAAATGAAAATCAGAATCAAAATCAGAATCAGGTGA
* * *
87620257 CAAAATTAAAATCAGAATCAGAATCAGAATTAGGT
1 CAAAATGAAAATCAGAATCAAAATCAGAATCAGGT
87620292 AACAGAATCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.19
Consensus pattern (37 bp):
CAAAATGAAAATCAGAATCAAAATCAGAATCAGGTGA
Found at i:87620297 original size:25 final size:25
Alignment explanation
Indices: 87620269--87620335 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
87620259 AAATTAAAAT
*
87620269 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
87620294 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
87620319 CAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
87620336 CCAGAATCAG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:87620301 original size:31 final size:30
Alignment explanation
Indices: 87620266--87620376 Score: 118
Period size: 31 Copynumber: 3.6 Consensus size: 30
87620256 ACAAAATTAA
87620266 AATCAGAATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGAATTA-GTAACAG
* *
87620297 AATCAGAATCAGTATCAGGTAA-CAG-AATCAG
1 AATCAGAATCAGAATCA-G-AATTAGTAA-CAG
*
87620328 AATCAGAACCAGAATCAGAATTAAGTAACAG
1 AATCAGAATCAGAATCAGAATT-AGTAACAG
* *
87620359 AATCAAAATCAGTATCAG
1 AATCAGAATCAGAATCAG
87620377 GTAATAGAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 55 0.83
32 4 0.06
33 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (30 bp):
AATCAGAATCAGAATCAGAATTAGTAACAG
Found at i:87620356 original size:37 final size:37
Alignment explanation
Indices: 87620294--87620370 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
87620284 AATTAGGTAA
* * * *
87620294 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATCAAGTAACAGAATCAAAAT
*
87620331 CAGAACCAGAATCAGAATTAAGTAACAGAATCAAAAT
1 CAGAACCAGAATCAGAATCAAGTAACAGAATCAAAAT
87620368 CAG
1 CAG
87620371 TATCAGGTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (37 bp):
CAGAACCAGAATCAGAATCAAGTAACAGAATCAAAAT
Found at i:87620368 original size:25 final size:25
Alignment explanation
Indices: 87620294--87620396 Score: 64
Period size: 25 Copynumber: 4.4 Consensus size: 25
87620284 AATTAGGTAA
*
87620294 CAGAATCAGAATC-AGTATCAGGTAA-
1 CAGAATCAGAATCAAGTAACA-G-AAT
87620319 CAGAATCAGAATC-AG-AACCAGAAT
1 CAGAATCAGAATCAAGTAA-CAGAAT
87620343 CAGAAT-----T-AAGTAACAGAAT
1 CAGAATCAGAATCAAGTAACAGAAT
* * * *
87620362 CAAAATCAGTATCAGGTAATAGAAT
1 CAGAATCAGAATCAAGTAACAGAAT
87620387 CAGAATCAGA
1 CAGAATCAGA
87620397 GTGTGAATGC
Statistics
Matches: 62, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
19 14 0.23
20 2 0.03
23 2 0.03
24 9 0.15
25 35 0.56
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAAGTAACAGAAT
Found at i:87620665 original size:27 final size:26
Alignment explanation
Indices: 87620617--87620668 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87620607 GCGAGGCTGC
*
87620617 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
87620643 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
87620669 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:87620926 original size:27 final size:27
Alignment explanation
Indices: 87620896--87621181 Score: 365
Period size: 27 Copynumber: 10.6 Consensus size: 27
87620886 AACACCCTAG
* * *
87620896 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
87620923 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
87620950 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
87620977 GGGTAAAACGATAATTCTATAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
**
87621004 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
87621031 GGGTAAAATGGTAATTTTGTAAATTGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
87621058 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
87621085 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
**
87621112 GGGTAAAAAAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** *
87621139 GGGTAAAATAGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
87621166 GGGTAAAACGATAATT
1 GGGTAAAACGGTAATT
87621182 TTACAAACCA
Statistics
Matches: 225, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 225 1.00
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:87621183 original size:81 final size:81
Alignment explanation
Indices: 87620896--87621181 Score: 403
Period size: 81 Copynumber: 3.5 Consensus size: 81
87620886 AACACCCTAG
* * * *
87620896 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
1 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAAAG
87620961 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * **
87620977 GGGTAAAACGATAATTCTATAAATCAAGGGTAAAA-TAGTAATTCTGTAAATCGAGGGTAAAATG
1 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAAAA
*
87621041 GTAATTTTGTAAATTGA
65 GTAATTTTGTAAATCGA
* * * *
87621058 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAAAAG
1 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAAAG
*
87621123 TAATTCTGTAAATCGA
66 TAATTTTGTAAATCGA
* *
87621139 GGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACGATAATT
1 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATT
87621182 TTACAAACCA
Statistics
Matches: 180, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 179 0.99
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (81 bp):
GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAAAG
TAATTTTGTAAATCGA
Found at i:87621208 original size:81 final size:78
Alignment explanation
Indices: 87620896--87621215 Score: 243
Period size: 81 Copynumber: 3.9 Consensus size: 78
87620886 AACACCCTAG
* * * * * **
87620896 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATC-GAGGGTAAAACA
1 GGGTAAAA-AGTAATTCTATAAATCAAGGGTAAAACGATAATTTTA-AAACCAG-GGGTAAATGA
87620960 GTAATTTTGTAAATCGA
63 -TAATTTTGTAAATCGA
* * * *
87620977 GGGTAAAACGATAATTCTATAAATCAAGGGTAAAA-TAGTAATTCTGTAAATCGA-GGGTAAAAT
1 GGGTAAAAAG-TAATTCTATAAATCAAGGGTAAAACGA-TAATT-T-TAAAACCAGGGGT-AAAT
* *
87621040 GGTAATTTTGTAAATTGA
61 GATAATTTTGTAAATCGA
* * * * * **
87621058 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAAAA
1 GGGTAAAA-AGTAATTCTATAAATCAAGGGTAAAACGATAATTTT-AAAACCAG-GGGTAAATGA
*
87621122 GTAATTCTGTAAATCGA
63 -TAATTTTGTAAATCGA
* **
87621139 GGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACGATAATTTTACAAACCAGGGGTATTTTGA
1 GGGTAAAA-AGTAATTCTATAAATCAAGGGTAAAACGATAATTTTA-AAACCAGGGGTA-AATGA
*
87621204 TAATTTGGTAAA
63 TAATTTTGTAAA
87621216 CTAAAGTATT
Statistics
Matches: 186, Mismatches: 38, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
79 1 0.01
80 8 0.04
81 167 0.90
82 8 0.04
83 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (78 bp):
GGGTAAAAAGTAATTCTATAAATCAAGGGTAAAACGATAATTTTAAAACCAGGGGTAAATGATAA
TTTTGTAAATCGA
Found at i:87624760 original size:23 final size:22
Alignment explanation
Indices: 87624729--87624771 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
87624719 GTACTCCTTA
* *
87624729 CCAAATCATGCCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
87624751 CCAAACTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
87624772 TGATTTATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.49, C:0.30, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:87634674 original size:93 final size:93
Alignment explanation
Indices: 87634567--87634737 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
87634557 ACCCCTAAGT
*
87634567 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
87634632 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CAAGTTCGGATGCCTAGTTACATTTCAC
* *
87634660 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
87634725 CAAGTTCGGATGC
66 CAAGTTCGGATGC
87634738 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATTTCAC
Found at i:87634734 original size:46 final size:46
Alignment explanation
Indices: 87634562--87634734 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
87634552 AACCCACCCC
* *
87634562 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
87634608 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
87634656 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
87634701 TAGGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87634735 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 1 0.01
46 60 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:87643812 original size:21 final size:21
Alignment explanation
Indices: 87643786--87643827 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
87643776 TTTTGAATCA
87643786 ATACAAGAGGAATGGACTATG
1 ATACAAGAGGAATGGACTATG
87643807 ATACAAGAGGAATGGACTATG
1 ATACAAGAGGAATGGACTATG
87643828 TCTATTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.29, T:0.19
Consensus pattern (21 bp):
ATACAAGAGGAATGGACTATG
Found at i:87646813 original size:35 final size:35
Alignment explanation
Indices: 87646774--87646843 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
87646764 TCTGTTGCTA
87646774 GAAAGAACTTATAGTTACATGCATCTGTAGTCAAT
1 GAAAGAACTTATAGTTACATGCATCTGTAGTCAAT
87646809 GAAAGAACTTATAGTTACATGCATCTGTAGTCAAT
1 GAAAGAACTTATAGTTACATGCATCTGTAGTCAAT
87646844 AATAATAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (35 bp):
GAAAGAACTTATAGTTACATGCATCTGTAGTCAAT
Found at i:87648396 original size:37 final size:37
Alignment explanation
Indices: 87648328--87648400 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
87648318 TAAAAAACAT
* *
87648328 TTTAATATAATTATATTAAGAATGTTATTAAATTATA
1 TTTAATATAATTATATTAAGAATATGATTAAATTATA
*
87648365 TTTAATAATAATTATATTAA-AATATGGTTAAATTAT
1 TTTAAT-ATAATTATATTAAGAATATGATTAAATTAT
87648401 TTATTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 19 0.59
38 13 0.41
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (37 bp):
TTTAATATAATTATATTAAGAATATGATTAAATTATA
Found at i:87648616 original size:46 final size:44
Alignment explanation
Indices: 87648532--87648623 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 44
87648522 ATATCTATTC
*
87648532 CATTCAACCAAACATAATAATACTATTACAGTTCTATTCCATTA
1 CATTCAACCAAACATAATAATACTATTACAGCTCTATTCCATTA
*
87648576 CATTCAACCAAACA-ATTGAATTACTGATTACAGCTCTATTCCATTA
1 CATTCAACCAAACATAAT-AA-TACT-ATTACAGCTCTATTCCATTA
87648622 CA
1 CA
87648624 GTCTTATTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 2 0.05
44 16 0.37
45 4 0.09
46 21 0.49
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (44 bp):
CATTCAACCAAACATAATAATACTATTACAGCTCTATTCCATTA
Found at i:87648623 original size:16 final size:16
Alignment explanation
Indices: 87648602--87648641 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
87648592 TGAATTACTG
87648602 ATTACAG-CTCTATTCC
1 ATTACAGTCT-TATTCC
87648618 ATTACAGTCTTATTCC
1 ATTACAGTCTTATTCC
*
87648634 ATTCCAGT
1 ATTACAGT
87648642 GAACCAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.91
17 2 0.09
ACGTcount: A:0.25, C:0.28, G:0.07, T:0.40
Consensus pattern (16 bp):
ATTACAGTCTTATTCC
Found at i:87648861 original size:29 final size:30
Alignment explanation
Indices: 87648799--87648862 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
87648789 TAAAATAAAT
*
87648799 AAAAACTATTGAAATTTAAAAAGAAAAACT
1 AAAAACTATTGAAATTTAAAAAGAAAAACG
*
87648829 AAAAA-TATTTAAA-TTATAAAAGATAAAA-G
1 AAAAACTATTGAAATTTA-AAAAGA-AAAACG
87648858 AAAAA
1 AAAAA
87648863 AACTTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 3 0.10
29 18 0.60
30 9 0.30
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.23
Consensus pattern (30 bp):
AAAAACTATTGAAATTTAAAAAGAAAAACG
Found at i:87664402 original size:28 final size:29
Alignment explanation
Indices: 87664354--87664419 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 29
87664344 AAGTCTACAT
*
87664354 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
87664382 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
87664411 ACATTCATA
1 ACATTCATA
87664420 GTCATGCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 21 0.64
29 12 0.36
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:87667260 original size:42 final size:43
Alignment explanation
Indices: 87667187--87667289 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
87667177 ACATGTTATA
* * * *
87667187 CTTTAGTTTATCTGATGATACACTGTTTGTG-CAGTATAATTC
1 CTTTAGTTTATCCGATGACACACTGTGTGTGCCAATATAATTC
* * *
87667229 CTTT-GATTTATTCGATGACACATTGTGTGTGCCAATATAATTG
1 CTTTAG-TTTATCCGATGACACACTGTGTGTGCCAATATAATTC
87667272 CTTTAGTTTATCCGATGA
1 CTTTAGTTTATCCGATGA
87667290 TGCACTACTC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.02
42 24 0.48
43 24 0.48
44 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (43 bp):
CTTTAGTTTATCCGATGACACACTGTGTGTGCCAATATAATTC
Found at i:87667282 original size:43 final size:42
Alignment explanation
Indices: 87667187--87667289 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 42
87667177 ACATGTTATA
* * *
87667187 CTTTAGTTTA-TCTGATGATACACTGTTTGTGCAGTATAATTC
1 CTTTAGTTTATTC-GATGACACACTGTGTGTGCAATATAATTC
* *
87667229 CTTT-GATTTATTCGATGACACATTGTGTGTGCCAATATAATTG
1 CTTTAG-TTTATTCGATGACACACTGTGTGTG-CAATATAATTC
*
87667272 CTTTAGTTTATCCGATGA
1 CTTTAGTTTATTCGATGA
87667290 TGCACTACTC
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 23 0.45
43 26 0.51
44 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (42 bp):
CTTTAGTTTATTCGATGACACACTGTGTGTGCAATATAATTC
Found at i:87679876 original size:92 final size:94
Alignment explanation
Indices: 87679707--87679876 Score: 218
Period size: 92 Copynumber: 1.8 Consensus size: 94
87679697 GACCTGGTTA
* ** *
87679707 GGCCCTACCAATTGGATGCATGCAGGCCTTGTAGTGGGGGCTCATTAAAAGGGCTCATAAGGGAA
1 GGCCCTACCAATTGGATGCATGCAGGCCTTGTAGTAGGGGCTCACCAAAAGGGCTCACAAGGGAA
* * *
87679772 GTTCGCGGTCCTATTTTTCAACCTAATTG
66 ATTCACGATCCTATTTTTCAACCTAATTG
* * * *
87679801 GGCCCTACC-ATTGGATGCGTGTAGG-CTTGTAGTAGGGGTTCGCCAAAAGGGCTCACAAGGGAA
1 GGCCCTACCAATTGGATGCATGCAGGCCTTGTAGTAGGGGCTCACCAAAAGGGCTCACAAGGGAA
*
87679864 ATTCATGATCCTA
66 ATTCACGATCCTA
87679877 ATTCGCATAT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
92 41 0.64
93 14 0.22
94 9 0.14
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (94 bp):
GGCCCTACCAATTGGATGCATGCAGGCCTTGTAGTAGGGGCTCACCAAAAGGGCTCACAAGGGAA
ATTCACGATCCTATTTTTCAACCTAATTG
Found at i:87681859 original size:16 final size:16
Alignment explanation
Indices: 87681838--87681906 Score: 58
Period size: 16 Copynumber: 4.5 Consensus size: 16
87681828 ATTAAAATAA
87681838 AATCCTAAATTTAAAT
1 AATCCTAAATTTAAAT
* *
87681854 AATCCTAAAAATAAAGAT
1 AATCCT-AAATTTAA-AT
*
87681872 AAT--TAAA-AT-AA-
1 AATCCTAAATTTAAAT
87681883 AATCCTAAATTTAAAT
1 AATCCTAAATTTAAAT
87681899 AATCCTAA
1 AATCCTAA
87681907 TAATTATCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
11 3 0.07
12 1 0.02
13 5 0.12
14 1 0.02
15 5 0.12
16 15 0.37
17 6 0.15
18 5 0.12
ACGTcount: A:0.57, C:0.12, G:0.01, T:0.30
Consensus pattern (16 bp):
AATCCTAAATTTAAAT
Found at i:87681869 original size:45 final size:45
Alignment explanation
Indices: 87681820--87681906 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
87681810 TACATTTAAT
87681820 TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAAAAA
1 TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAAAAA
87681865 TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAA
1 TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAA
87681907 TAATTATCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (45 bp):
TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAAAAA
Found at i:87681927 original size:15 final size:15
Alignment explanation
Indices: 87681907--87681936 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
87681897 ATAATCCTAA
*
87681907 TAATTATCTTAATAT
1 TAATTATCCTAATAT
87681922 TAATTATCCTAATAT
1 TAATTATCCTAATAT
87681937 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:87683836 original size:137 final size:135
Alignment explanation
Indices: 87683471--87684125 Score: 551
Period size: 137 Copynumber: 4.9 Consensus size: 135
87683461 CGCTCTTAGT
* ** * * * * *
87683471 TGATGTCATAAAGGTTTATCAGTTTAAGATTGCAACCTCCAAAGCAA-TTGTGAACCTATGCTTC
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAGAG-ACCTACGCTCC
* * * *
87683535 CAATTGACATTACAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCGACACAGCTAGC-AGGCCTATG
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGA-ACCTA-G
* **
87683599 CTCCTAGT
128 CTCCCAAC
** * * *
87683607 TGATGTCAT-AAGGTTTGTTTTTTTAAGATCGTAACCTCTAAAG---CTAGTAGACCTA-GCTCT
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAG-AGACCTACGCTCC
* ** * * *** * * * *
87683667 TAGCTAACATTACAAGAGCTCATGGAGTTAAGCTCCCAGGTCCGACATAGCTAACGAACCTAGGC
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGAACCTA-GC
87683732 TCCCAAC
129 TCCCAAC
** * ***
87683739 TGATGTCATAAAATTTTGTTTGTTTAAGATTATAACCTCCAAAGCAACTAGCAGACCTACGCTCC
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAG-AGACCTACGCTCC
* * ** *
87683804 CAATTGACATTATAATAGCTCGCAGAGTTAAGCTCACAGCT----C-CAGCTAGTGGACCTAGCT
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGAACCTAGCT
87683864 CCCAAC
130 CCCAAC
* * * *
87683870 TAATGTCATAAAGGTTTATCGGTTTAAGATCGCAATCTCCAAAGCAACTAGCAGACCTACGCTCC
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAG-AGACCTACGCTCC
* * * * * * * * ** *
87683935 CAACTAACATTATAAGAACCCGTAAAGTTAAGCTTGCAGCTCCAACACAGTTAGTGGACCTACGC
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGAACCTA-GC
87684000 TCCCAAC
129 TCCCAAC
* ** * * *
87684007 TGATGTCATAAAGTTTTGTTGGTAAAAGATCACAACCTCTAAAGCAGCTAGAGAACCTACGCTCC
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAGAG-ACCTACGCTCC
* *
87684072 CAATTGACATTATAAGAGCTCACAGAGTTAAGCTCGCAGATCCAACACAGCTAA
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAA
87684126 AAAGGCTATC
Statistics
Matches: 413, Mismatches: 91, Indels: 29
0.77 0.17 0.05
Matches are distributed among these distances:
131 96 0.23
132 77 0.19
133 37 0.09
134 1 0.00
135 28 0.07
136 36 0.09
137 138 0.33
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (135 bp):
TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAGAGACCTACGCTCCC
AATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGAACCTAGCTC
CCAAC
Found at i:87683944 original size:268 final size:264
Alignment explanation
Indices: 87683492--87684115 Score: 662
Period size: 268 Copynumber: 2.3 Consensus size: 264
87683482 AGGTTTATCA
* * * * * *
87683492 GTTTAAGATTGCAACCTCCAAAGCAA-TTGTGAACCTATGCTTCCAATTGACATTACAAGAGCTC
1 GTTTAAGATTACAACCTCCAAAGCAACTAGAGAACCTACGCTCCCAATTGACATTATAAGAGCTC
* ** *
87683556 GCAGAGTTAAGCTCGCAGCTCCGACACAGCTAGCAGGCCTATGCTCCTAGTTGATGTCATAAGGT
66 GCAGAGTTAAGCTCGCAGCT----C-CAGCTAGCAGGCCTATGCTCCCAACTAATGTCATAAGGT
* *** * * * ** * *
87683621 TTGTTTTTTTAAGATCGTAACCTCTAAAGCTAGTAGACCTAGCTCTTAGCTAACATTACAAGAGC
126 TTATCGGTTTAAGATCGCAACCTCCAAAGCTAGCAGACCTAGCTCCCAACTAACATTACAAGAAC
* ** * * * *
87683686 TCATGGAGTTAAGCTCCCAGGTCCGACATAGCTAACGAACCTAGGCTCCCAACTGATGTCATAAA
191 CCATAAAGTTAAGCTCCCAGCTCCAACACAGCTAACGAACCTACGCTCCCAACTGATGTCATAAA
*
87683751 ATTTTGTTT
256 ATTTTGTTG
* *
87683760 GTTTAAGATTATAACCTCCAAAGCAACTAGCAG-ACCTACGCTCCCAATTGACATTATAATAGCT
1 GTTTAAGATTACAACCTCCAAAGCAACTAG-AGAACCTACGCTCCCAATTGACATTATAAGAGCT
* *
87683824 CGCAGAGTTAAGCTCACAGCTCCAGCTAG-TGGACCTA-GCTCCCAACTAATGTCATAAAGGTTT
65 CGCAGAGTTAAGCTCGCAGCTCCAGCTAGCAGG-CCTATGCTCCCAACTAATGTCAT-AAGGTTT
* *
87683887 ATCGGTTTAAGATCGCAATCTCCAAAGCAACTAGCAGACCTACGCTCCCAACTAACATTATAAGA
128 ATCGGTTTAAGATCGCAACCTCCAAAG---CTAGCAGACCTA-GCTCCCAACTAACATTACAAGA
* ** * ** *
87683952 ACCCGTAAAGTTAAGCTTGCAGCTCCAACACAGTTAGTGGACCTACGCTCCCAACTGATGTCATA
189 ACCCATAAAGTTAAGCTCCCAGCTCCAACACAGCTAACGAACCTACGCTCCCAACTGATGTCATA
*
87684017 AAGTTTTGTTG
254 AAATTTTGTTG
** * * *
87684028 GTAAAAGATCACAACCTCTAAAGCAGCTAGAGAACCTACGCTCCCAATTGACATTATAAGAGCTC
1 GTTTAAGATTACAACCTCCAAAGCAACTAGAGAACCTACGCTCCCAATTGACATTATAAGAGCTC
* *
87684093 ACAGAGTTAAGCTCGCAGATCCA
66 GCAGAGTTAAGCTCGCAGCTCCA
87684116 ACACAGCTAA
Statistics
Matches: 294, Mismatches: 53, Indels: 18
0.81 0.15 0.05
Matches are distributed among these distances:
263 16 0.05
264 38 0.13
265 1 0.00
267 13 0.04
268 176 0.60
269 49 0.17
270 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (264 bp):
GTTTAAGATTACAACCTCCAAAGCAACTAGAGAACCTACGCTCCCAATTGACATTATAAGAGCTC
GCAGAGTTAAGCTCGCAGCTCCAGCTAGCAGGCCTATGCTCCCAACTAATGTCATAAGGTTTATC
GGTTTAAGATCGCAACCTCCAAAGCTAGCAGACCTAGCTCCCAACTAACATTACAAGAACCCATA
AAGTTAAGCTCCCAGCTCCAACACAGCTAACGAACCTACGCTCCCAACTGATGTCATAAAATTTT
GTTG
Found at i:87686251 original size:81 final size:81
Alignment explanation
Indices: 87686119--87686267 Score: 178
Period size: 81 Copynumber: 1.8 Consensus size: 81
87686109 ACCTGGTTGA
* * **
87686119 GCCCTACCAGTTAGATGTGTTAAGGCCTTGTAGTGGGGGTTTATCAAAAGGGCTCGTTAGGGAAG
1 GCCCTACCAGTTAGATGTGTTAAGACCTTGTAGTGGGGGTTGATCAAAAGGGCTCGCAAGGGAAG
87686184 TTCGTGACCTGATCAG
66 TTCGTGACCTGATCAG
* * * *
87686200 GCCCTACCAGTT-GAT-TGTATGCAGACCTTGTAGTGGGGGTTCGCT-AGAAGGGCTTGCAAGGG
1 GCCCTACCAGTTAGATGTGT-T-AAGACCTTGTAGTGGGGGTT-GATCAAAAGGGCTCGCAAGGG
87686262 AAGTTC
63 AAGTTC
87686268 ACGGTCCTAG
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
79 3 0.05
80 4 0.07
81 49 0.86
82 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (81 bp):
GCCCTACCAGTTAGATGTGTTAAGACCTTGTAGTGGGGGTTGATCAAAAGGGCTCGCAAGGGAAG
TTCGTGACCTGATCAG
Found at i:87690685 original size:24 final size:27
Alignment explanation
Indices: 87690658--87690711 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 27
87690648 TAATGAGAAT
87690658 CATTAATATCT-TAAGT-TTTTT-TTA
1 CATTAATATCTATAAGTATTTTTGTTA
* *
87690682 CATTATTATTTATAAGTATTTTTGTTA
1 CATTAATATCTATAAGTATTTTTGTTA
87690709 CAT
1 CAT
87690712 AAAATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 9 0.36
25 5 0.20
26 5 0.20
27 6 0.24
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (27 bp):
CATTAATATCTATAAGTATTTTTGTTA
Found at i:87696268 original size:44 final size:44
Alignment explanation
Indices: 87696203--87696359 Score: 164
Period size: 43 Copynumber: 3.6 Consensus size: 44
87696193 TGTGTTTTCG
* *
87696203 TGTAAGACCACATCTAGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGATTTACA
* * *
87696247 TATAAGACCACGTCTGGGACGTTGGCATC-ATATTTGATTT-CG
1 TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTTACA
***
87696289 TGTAAGACCTTGTCTAGGGTA-G-TGGCATCGATATTTGA-TTACA
1 TGTAAGACCACATCT-GGG-ACGTTGGCATCGATATTTGATTTACA
*
87696332 TGTAAGACTACATCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
87696360 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 38 0.41
44 27 0.29
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTTACA
Found at i:87698545 original size:19 final size:19
Alignment explanation
Indices: 87698498--87698549 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
87698488 TATGCGCTTA
* *
87698498 TGTGCCAAGATACACCTTG
1 TGTGCCAGGATGCACCTTG
87698517 TGTGCCAGGATGCACCTTG
1 TGTGCCAGGATGCACCTTG
**
87698536 TGTGTTAGGATGCA
1 TGTGCCAGGATGCA
87698550 TTTCGTGTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (19 bp):
TGTGCCAGGATGCACCTTG
Found at i:87706542 original size:47 final size:47
Alignment explanation
Indices: 87706483--87706782 Score: 474
Period size: 47 Copynumber: 6.4 Consensus size: 47
87706473 GATGTACAAG
* *
87706483 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
87706530 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
87706577 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
87706624 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
87706671 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
87706718 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
87706765 GCGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
87706783 TCCCGAAGGG
Statistics
Matches: 233, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 233 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:87712475 original size:24 final size:24
Alignment explanation
Indices: 87712446--87712493 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
87712436 CCAAGCATGC
87712446 TCAACATTTGAGAATCGTATTCAG
1 TCAACATTTGAGAATCGTATTCAG
87712470 TCAACATTTGAGAATCGTATTCAG
1 TCAACATTTGAGAATCGTATTCAG
87712494 ACTTCGAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (24 bp):
TCAACATTTGAGAATCGTATTCAG
Found at i:87720229 original size:16 final size:18
Alignment explanation
Indices: 87720208--87720240 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
87720198 TGTTTTTGTA
87720208 TGAATG-ATAT-TATTAT
1 TGAATGAATATCTATTAT
87720224 TGAATGAATATCTATTA
1 TGAATGAATATCTATTA
87720241 ATGTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.12, T:0.45
Consensus pattern (18 bp):
TGAATGAATATCTATTAT
Found at i:87721223 original size:23 final size:24
Alignment explanation
Indices: 87721192--87721243 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
87721182 CCGACCTCTA
*
87721192 TATTTAAATGATAAAATAAT-TTT
1 TATTAAAATGATAAAATAATATTT
* *
87721215 TATTAAAATTATAAAATTATATTT
1 TATTAAAATGATAAAATAATATTT
87721239 TATTA
1 TATTA
87721244 TTTATAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 17 0.68
24 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TATTAAAATGATAAAATAATATTT
Found at i:87722947 original size:3 final size:3
Alignment explanation
Indices: 87722941--87722974 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
87722931 AGAGATGATG
87722941 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
87722975 GAGATCAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:87731324 original size:22 final size:22
Alignment explanation
Indices: 87731297--87731343 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
87731287 TAGTGTATCC
87731297 AAAACATTAGGAAACAATAATA
1 AAAACATTAGGAAACAATAATA
87731319 AAAACATTAGGAAACAATAATA
1 AAAACATTAGGAAACAATAATA
87731341 AAA
1 AAA
87731344 TAGAAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.66, C:0.09, G:0.09, T:0.17
Consensus pattern (22 bp):
AAAACATTAGGAAACAATAATA
Found at i:87739685 original size:42 final size:42
Alignment explanation
Indices: 87739607--87739817 Score: 172
Period size: 42 Copynumber: 4.9 Consensus size: 42
87739597 TTGGCCTCGG
* * * * * *
87739607 TATGTGATTTCATGTAAGGCCATATCTAGGATATGGCATTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
*
87739649 TATGAGATTTCGTGTAAGACCAGGTCTGGGACATGGCATTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
* * **
87739691 TTTGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCATCGGTACTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCA----T--TGA
* * * * * **
87739739 TGTGAGATTTCGTATAAAACCATATCTGGGATATGGCATCCA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
* *
87739781 TATGTAGA-CTCATGTAAGACCATGTCTGGGACATGGC
1 TATG-AGATTTCGTGTAAGACCATGTCTGGGACATGGC
87739818 TTTGGAATTC
Statistics
Matches: 133, Mismatches: 29, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
42 95 0.71
43 3 0.02
44 1 0.01
46 1 0.01
48 33 0.25
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
Found at i:87739745 original size:90 final size:90
Alignment explanation
Indices: 87739646--87739817 Score: 220
Period size: 90 Copynumber: 1.9 Consensus size: 90
87739636 GATATGGCAT
* * * ** * * *
87739646 TGATATGAGATTTCGTGTAAGACCAGGTCTGGGACATGGCATTGATTTG-AGGTCCCGTGTAAGA
1 TGATATGAGATTTCGTATAAAACCAGATCTGGGACATGGCATCCATATGTA-GACCCATGTAAGA
87739710 CCATGTCTGGGACATGGCATCGGTAC
65 CCATGTCTGGGACATGGCATCGGTAC
* * * *
87739736 TGATGTGAGATTTCGTATAAAACCATATCTGGGATATGGCATCCATATGTAGACTCATGTAAGAC
1 TGATATGAGATTTCGTATAAAACCAGATCTGGGACATGGCATCCATATGTAGACCCATGTAAGAC
87739801 CATGTCTGGGACATGGC
66 CATGTCTGGGACATGGC
87739818 TTTGGAATTC
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
90 68 0.99
91 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (90 bp):
TGATATGAGATTTCGTATAAAACCAGATCTGGGACATGGCATCCATATGTAGACCCATGTAAGAC
CATGTCTGGGACATGGCATCGGTAC
Found at i:87768219 original size:48 final size:48
Alignment explanation
Indices: 87768139--87768237 Score: 155
Period size: 48 Copynumber: 2.1 Consensus size: 48
87768129 ACTATGATTA
**
87768139 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGTGTTGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAT
*
87768187 ATGATAGCTAGTGTAAGACCATGTCT-GAGACATGGCATCGGCATTGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTAG-GACATGGCATCGGCATTGAT
87768235 ATG
1 ATG
87768238 TGTGCCAGAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 1 0.02
48 46 0.98
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAT
Found at i:87768359 original size:42 final size:42
Alignment explanation
Indices: 87768333--87768441 Score: 164
Period size: 42 Copynumber: 2.6 Consensus size: 42
87768323 TATGAAATTT
87768333 CGTGTAAGACTAGGTCTGGGACATGACATCGATGTGAGGTCC
1 CGTGTAAGACTAGGTCTGGGACATGACATCGATGTGAGGTCC
* ** *
87768375 CGTGTAATACTAGGTCTCAGACATGATATCGATGTGAGGTCC
1 CGTGTAAGACTAGGTCTGGGACATGACATCGATGTGAGGTCC
* *
87768417 CGTGTAAGACCATGTCTGGGACATG
1 CGTGTAAGACTAGGTCTGGGACATG
87768442 GCATTGGCAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (42 bp):
CGTGTAAGACTAGGTCTGGGACATGACATCGATGTGAGGTCC
Found at i:87772392 original size:46 final size:46
Alignment explanation
Indices: 87772332--87772603 Score: 323
Period size: 46 Copynumber: 5.9 Consensus size: 46
87772322 TCTAATATAA
* * * *
87772332 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTCTTATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCATGT
** * *
87772378 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCATGT
* ** * **
87772424 TGCCATAGTATCTTTCAACCATCATCTTATTCATTTCCCATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCATGT
* * * **
87772470 TGCCATGATATCTTTCAACCATGGTCTTATTCATTTCATGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCATGT
* *
87772516 TGCCATGATATCTTTCAACCATGGTCTTACAT-ATTT-ATTTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCATATCATGT
*
87772561 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
87772604 GAAAGCACAC
Statistics
Matches: 191, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
45 39 0.20
46 151 0.79
47 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCATGT
Found at i:87772489 original size:92 final size:91
Alignment explanation
Indices: 87772332--87772599 Score: 360
Period size: 92 Copynumber: 2.9 Consensus size: 91
87772322 TCTAATATAA
* * *
87772332 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTCTTATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTA-TCATTTCATATCATGTTGCCATGGTATCTTTCAAC
* *
87772397 CATGGTCTTGTTCATTTCATGTCACGT
65 CATGGTCTTATTCATTTCATGTCACAT
** ** *
87772424 TGCCATAGTATCTTTCAACCATCATCTTATTCATTTCCCATCATGTTGCCATGATATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTA-TCATTTCATATCATGTTGCCATGGTATCTTTCAAC
87772489 CATGGTCTTATTCATTTCATGTCACAT
65 CATGGTCTTATTCATTTCATGTCACAT
* *
87772516 TGCCAT-GATATCTTTCAACCATGGTCTTA-CATATTTATTTCATGTTGCCATGGTATCTTTCAA
1 TGCCATAG-TATCTTTCAACCATGGTCTTATCAT-TTCATATCATGTTGCCATGGTATCTTTCAA
**
87772579 CCATGGTCTTACACATTTCAT
64 CCATGGTCTTATTCATTTCAT
87772600 ATCAGAAAGC
Statistics
Matches: 155, Mismatches: 19, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
90 3 0.02
91 45 0.29
92 107 0.69
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (91 bp):
TGCCATAGTATCTTTCAACCATGGTCTTATCATTTCATATCATGTTGCCATGGTATCTTTCAACC
ATGGTCTTATTCATTTCATGTCACAT
Found at i:87776356 original size:43 final size:43
Alignment explanation
Indices: 87776264--87776357 Score: 129
Period size: 42 Copynumber: 2.2 Consensus size: 43
87776254 CATTAGGGTT
* *
87776264 ATTTGAG-TTTACGTGTAAGACCATATCTTGGATATGGCATCG
1 ATTTGAGATTTACGTGTAAGACCATAGCTAGGATATGGCATCG
* *
87776306 ATATGAGATTT-CGTGTAAGACCATAGCTAGGCTATTGGCATCG
1 ATTTGAGATTTACGTGTAAGACCATAGCTAGGATA-TGGCATCG
87776349 ATTTGAGAT
1 ATTTGAGAT
87776358 CCCATGTAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 26 0.58
43 19 0.42
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
ATTTGAGATTTACGTGTAAGACCATAGCTAGGATATGGCATCG
Found at i:87776366 original size:43 final size:42
Alignment explanation
Indices: 87776277--87776369 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 42
87776267 TGAGTTTACG
* * ** *
87776277 TGTAAGACCATATCTTGGATATGGCATCGATATGAGATTTCG
1 TGTAAGACCATAGCTAGGATATGGCATCGATATGAGATCCCA
* *
87776319 TGTAAGACCATAGCTAGGCTATTGGCATCGATTTGAGATCCCA
1 TGTAAGACCATAGCTAGGATA-TGGCATCGATATGAGATCCCA
87776362 TGTAAGAC
1 TGTAAGAC
87776370 GGGATTATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 18 0.42
43 25 0.58
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAGCTAGGATATGGCATCGATATGAGATCCCA
Found at i:87779247 original size:102 final size:100
Alignment explanation
Indices: 87779091--87779488 Score: 397
Period size: 101 Copynumber: 4.0 Consensus size: 100
87779081 TAAAATGGTT
* * *
87779091 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGT
1 TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGT
* *
87779156 AGTACTAAGTGCCGGCAACTATGCGTACCTGATAG
66 AGTACTAAGTGCAGGCAACTATGCGTACCAGATAG
* * ** *
87779191 CTTTGATCAC-TGTGTAGTACTAAGTACAGGGTACTACGTGTATATGACGATT-TTAGGTCACGT
1 -TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTG--TACCA-GATTGTTAGGTCACAT
* * *
87779254 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
62 GTGTAGTACTAAGTGCAGGCAACTATGCGTACCAGATAG
* * * * * * * * *
87779293 TTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTA-TTCGTACCCGATAGCTTCGATCACATGT
1 TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGT-GTACCAGATTG-TTAGGTCACATGT
* * * * ** *
87779357 GTAGTACTAAGTACAGGCTACTACGTGTATTAGATGG
64 GTAGTACTAAGTGCAGGCAACTATGCGTACCAGATAG
* * * * * *
87779394 TTAGGTCACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAAATTGTTAGGTCGCATGTGT
1 TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGT
*
87779459 AGTACTAAGTGCAGGCTACTATGCGTACCA
66 AGTACTAAGTGCAGGCAACTATGCGTACCA
87779489 AAGAGCTTCG
Statistics
Matches: 242, Mismatches: 47, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
99 3 0.01
100 67 0.28
101 96 0.40
102 72 0.30
103 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (100 bp):
TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCAACTATGCGTACCAGATAG
Found at i:87779329 original size:152 final size:150
Alignment explanation
Indices: 87779089--87779487 Score: 647
Period size: 152 Copynumber: 2.6 Consensus size: 150
87779079 TTTAAAATGG
*
87779089 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGT
1 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGT
* * * *
87779154 GTAGTACTAAGTGCCGGCAACTATGCGTACCTGATAGCTTTGATCAC-TGTGTAGTACTAAGTAC
66 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTAGTACTAAGTAC
*
87779218 AGGGTACTACGTGTATATGACGA
131 AGGCTACTACGTGTAT-T-A-GA
*
87779241 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGT
1 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGT
* *
87779306 GTAGTACTAAGTGCAAGCTACTATTCGTACCCGATAGCTTCGATCACATGTGTAGTACTAAGTAC
66 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTAGTACTAAGTAC
87779371 AGGCTACTACGTGTATTAGA
131 AGGCTACTACGTGTATTAGA
* * *
87779391 TGGTTAGGTCACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAAATTGTTAGGTCGCATG
1 T-TTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATG
87779456 TGTAGTACTAAGTGCAGGCTACTATGCGTACC
65 TGTAGTACTAAGTGCAGGCTACTATGCGTACC
87779488 AAAGAGCTTC
Statistics
Matches: 230, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
150 3 0.01
151 90 0.39
152 105 0.46
153 32 0.14
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (150 bp):
TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGT
GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTAGTACTAAGTAC
AGGCTACTACGTGTATTAGA
Found at i:87779385 original size:101 final size:100
Alignment explanation
Indices: 87779046--87779488 Score: 401
Period size: 102 Copynumber: 4.4 Consensus size: 100
87779036 TTGAGAGAAG
* * *** * *
87779046 ACATGTGTAGTACTATGTGCAGCCTACTATGTGTTTAAAATGGTTTTAGGTCACGTGTGTAGTAC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG--TTAGGTCACATGTGTAGTAC
* * * *
87779111 TAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
64 TAAGTGCAGCCTACTACGTGTACCAAATAGTTAGATC
* * * * * * *
87779148 ACATGTGTAGTACTAAGTGCCGGCAACTATGCGTACCTGATAGCTTTGATCAC-TGTGTAGTACT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAGGTCACATGTGTAGTACT
* ** * * *
87779212 AAGTACAGGGTACTACGTGTA-TATGACGAT-TTTAGGTC
65 AAGTGCAGCCTACTACGTGTACCA--A--ATAGTTAGATC
* * *
87779250 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGTGTAGTACTA
* ** *
87779315 AGTGCAAG-CTACTA-TTCGTACCCGATAGCTTCGATC
66 AGTGC-AGCCTACTACGT-GTACCAAATAG-TTAGATC
* * ** *
87779351 ACATGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTACTA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGTGTAGTACTA
* *
87779416 AGTGCAGCCTACTACGTGTACCAAATTGTTAGGTC
66 AGTGCAGCCTACTACGTGTACCAAATAGTTAGATC
* *
87779451 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
87779489 AAGAGCTTCG
Statistics
Matches: 271, Mismatches: 57, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
99 3 0.01
100 69 0.25
101 95 0.35
102 99 0.37
103 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (100 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGTGTAGTACTA
AGTGCAGCCTACTACGTGTACCAAATAGTTAGATC
Found at i:87779490 original size:50 final size:50
Alignment explanation
Indices: 87779046--87779488 Score: 444
Period size: 50 Copynumber: 8.8 Consensus size: 50
87779036 TTGAGAGAAG
* * ** *
87779046 ACATGTGTAGTACTATGTGCAGCCTACTATGTGTTTAAAATGGTT-TTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGTC
* *
87779098 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * * * * * *
87779148 ACATGTGTAGTACTAAGTGCCGGCAACTATGCGTACCTGATAGCTTTGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGTC
* * * **
87779199 AC-TGTGTAGTACTAAGTACAGGGTACTACGTGTATATGACGATT-TTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTA--TGTGTACCA-GATTGTTAGGTC
*
87779250 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * * * * *
87779300 GCATGTGTAGTACTAAGTGCAAGCTACTAT-TCGTACCCGATAGCTTCGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGT-GTACCAGATTG-TTAGGTC
* * ** *
87779351 ACATGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGATGGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * * *
87779401 ACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAAATTGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* *
87779451 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
87779489 AAGAGCTTCG
Statistics
Matches: 319, Mismatches: 62, Indels: 22
0.79 0.15 0.05
Matches are distributed among these distances:
49 8 0.03
50 198 0.62
51 52 0.16
52 58 0.18
53 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
Found at i:87779525 original size:151 final size:153
Alignment explanation
Indices: 87779046--87779498 Score: 644
Period size: 152 Copynumber: 3.0 Consensus size: 153
87779036 TTGAGAGAAG
* * * * * ** * * *
87779046 ACATGTGTAGTACTATGTGCAGCCTACTATGTGTTTAAAATGGTTTTAGGTCACGTGTGTAGTAC
1 ACATGTGTAGTACTAAGTACAGGCTACTACGTGTATATGACGATGTTAGGTCACGTGTGTAGTAC
* * *
87779111 TAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCCGGCAACT
66 TAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
* *
87779176 ATGCGTACCTGATAGCTTTGATC
131 ATGCGTACCAGATAGCTTCGATC
* *
87779199 AC-TGTGTAGTACTAAGTACAGGGTACTACGTGTATATGACGATTTTAGGTCACGTGTGTAGTAC
1 ACATGTGTAGTACTAAGTACAGGCTACTACGTGTATATGACGATGTTAGGTCACGTGTGTAGTAC
* *
87779263 TAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACT
66 TAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
* *
87779328 ATTCGTACCCGATAGCTTCGATC
131 ATGCGTACCAGATAGCTTCGATC
87779351 ACATGTGTAGTACTAAGTACAGGCTACTACGTGTAT-T-A-GATGGTTAGGTCACGTGTGTAGTA
1 ACATGTGTAGTACTAAGTACAGGCTACTACGTGTATATGACGAT-GTTAGGTCACGTGTGTAGTA
* *
87779413 CTAAGTGCAGCCTACTACGTGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTAC
65 CTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTAC
* *
87779478 TATGCGTACCAAAGAGCTTCG
130 TATGCGTACCAGATAGCTTCG
87779499 GTTACAAGGG
Statistics
Matches: 270, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
150 3 0.01
151 98 0.36
152 135 0.50
153 34 0.13
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (153 bp):
ACATGTGTAGTACTAAGTACAGGCTACTACGTGTATATGACGATGTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
ATGCGTACCAGATAGCTTCGATC
Found at i:87785038 original size:27 final size:27
Alignment explanation
Indices: 87785008--87785062 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
87784998 TGATCTAGCC
87785008 TTTCAATTTCAATACTGCTCTCATATA
1 TTTCAATTTCAATACTGCTCTCATATA
87785035 TTTCAATTTCAATACTGCTCTCATATA
1 TTTCAATTTCAATACTGCTCTCATATA
87785062 T
1 T
87785063 CAAAGTCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.45
Consensus pattern (27 bp):
TTTCAATTTCAATACTGCTCTCATATA
Found at i:87785071 original size:25 final size:26
Alignment explanation
Indices: 87785016--87785071 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 26
87785006 CCTTTCAATT
**
87785016 TCAATACTGCTCTCATATATTTCAATT
1 TCAATACTGCTCTCATATA-TTCAAAG
87785043 TCAATACTGCTCTCATATA-TCAAAG
1 TCAATACTGCTCTCATATATTCAAAG
87785068 TCAA
1 TCAA
87785072 CTTTTTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 8 0.30
27 19 0.70
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (26 bp):
TCAATACTGCTCTCATATATTCAAAG
Found at i:87786633 original size:46 final size:47
Alignment explanation
Indices: 87786484--87786659 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 47
87786474 TCACTTGTGT
* * * * * *
87786484 GAGCTAGTGTAAGACATGTCTGGGACA-CGCATCAGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGA-GACGA
* *
87786530 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGACGA
* *
87786578 GTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGACG-A
87786625 -AGCCAGTGTAAGACATGTCTGGGAC-TGGCATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGC
87786660 ACAGATATGC
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
45 1 0.01
46 59 0.53
47 28 0.25
48 22 0.20
49 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGACGA
Found at i:87786682 original size:94 final size:94
Alignment explanation
Indices: 87786487--87786701 Score: 231
Period size: 94 Copynumber: 2.3 Consensus size: 94
87786477 CTTGTGTGAG
* * *
87786487 CTAGTGTAAGACATGTCTGGGACACGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGACGAGAGCCAGTGTAAGACCATGTCT
** ***
87786552 GGGACATGGCATCGGCATTGAGACGAGTG
66 GGGACATGGCATCGGCACAGAGACGAAAA
* *
87786581 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGTA-AGCCAGTGTAAGA-CATGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGACG-AGAGCCAGTGTAAGACCATGT
* *
87786643 CTGGGAC-TGGCATCGGCACAGATATGCTAAAA
64 CTGGGACATGGCATCGGCACAGAGA--CGAAAA
* *
87786675 CTTGTGTAAGACCATGTCTAGGACATG
1 CTAGTGTAAGA-CATGTCTGGGACATG
87786702 GCATTAGCAC
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
92 14 0.14
93 12 0.12
94 60 0.59
95 16 0.16
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (94 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGACGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGGCACAGAGACGAAAA
Found at i:87795462 original size:46 final size:46
Alignment explanation
Indices: 87795143--87795461 Score: 469
Period size: 46 Copynumber: 6.9 Consensus size: 46
87795133 TTTGACATAA
* * * *
87795143 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * *
87795189 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
87795235 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
87795281 TACCCTGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
87795327 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
87795373 TGCCATTGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
87795419 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
87795462 GAGAGCACAC
Statistics
Matches: 254, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 250 0.98
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:87797602 original size:11 final size:11
Alignment explanation
Indices: 87797586--87797644 Score: 73
Period size: 11 Copynumber: 5.2 Consensus size: 11
87797576 CTTTATATAC
87797586 TAATAAAATAA
1 TAATAAAATAA
87797597 TAATAAAATAA
1 TAATAAAATAA
87797608 TAATAAAATATA
1 TAATAAAATA-A
* *
87797620 TTATTAAAATAT
1 -TAATAAAATAA
*
87797632 TAGTAAAATAA
1 TAATAAAATAA
87797643 TA
1 TA
87797645 TTTATCTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
11 32 0.76
12 1 0.02
13 9 0.21
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:87797638 original size:24 final size:25
Alignment explanation
Indices: 87797586--87797646 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
87797576 CTTTATATAC
87797586 TAATAAAATAATA--A-TAAAATAA
1 TAATAAAATAATATTATTAAAATAA
*
87797608 TAATAAAAT-ATATTATTAAAATAT
1 TAATAAAATAATATTATTAAAATAA
*
87797632 TAGTAAAATAATATT
1 TAATAAAATAATATT
87797647 TATCTAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
21 3 0.09
22 9 0.27
23 1 0.03
24 15 0.45
25 5 0.15
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
TAATAAAATAATATTATTAAAATAA
Found at i:87800566 original size:22 final size:23
Alignment explanation
Indices: 87800541--87800583 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
87800531 ATTTTCGGGC
*
87800541 TTAGGGGTAAA-TGGTCATTTTG
1 TTAGGGGCAAATTGGTCATTTTG
87800563 TTAGGGGCAAATTGGTCATTT
1 TTAGGGGCAAATTGGTCATTT
87800584 CTCCCAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.07, G:0.30, T:0.40
Consensus pattern (23 bp):
TTAGGGGCAAATTGGTCATTTTG
Found at i:87805049 original size:85 final size:85
Alignment explanation
Indices: 87804906--87805078 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 85
87804896 CCTTCATGAA
87804906 ACACATTCAAAACAATCAAACTCATGGCATACATCATCCCAAAACCTAGATGACTAACCAATTAA
1 ACACATTCAAAACAATCAAACTCATGGCATACATCATCCCAAAACCTAGATGACTAACCAATTAA
87804971 TAACACAAAAGCATGTATAT
66 TAACACAAAAGCATGTATAT
*
87804991 ACACATTCAAAACAATCAAACTCATGGCATACATTATCCCAAAACCTAGATGACTAACCAATTAA
1 ACACATTCAAAACAATCAAACTCATGGCATACATCATCCCAAAACCTAGATGACTAACCAATTAA
87805056 TAACACAAAAGCATGTATAT
66 TAACACAAAAGCATGTATAT
87805076 ACA
1 ACA
87805079 TATATATACA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.21
Consensus pattern (85 bp):
ACACATTCAAAACAATCAAACTCATGGCATACATCATCCCAAAACCTAGATGACTAACCAATTAA
TAACACAAAAGCATGTATAT
Found at i:87810397 original size:114 final size:114
Alignment explanation
Indices: 87810196--87810527 Score: 374
Period size: 114 Copynumber: 2.9 Consensus size: 114
87810186 GTGTTGGAAG
* * * *
87810196 GAGAGGAGGCAA-CATCATATAAGGGTTTCAAGGTACATTTTT-A--GTTTTT-TAATTCTTATT
1 GAGAGGAGGCAAGCAT-AT-TAA-GGTTTAAAGATACATTTTTAATTTTTTTTGTAATTATTA-T
* * *
87810256 TTTTTTGTTTGTTTGTAATCCTTATTATTTGCCCTATTTTGCGGTTTT-AAAA
62 TTATTTGTTTATTTGTAATCCTTATTATTTGTCCTATTTTGCGGTTTTGAAAA
**
87810308 GAAGAGGAGGC-AGCATATTAAGGTTTAGTGATACATTTTTAATTTTTTTTGTAATTATTATTTA
1 G-AGAGGAGGCAAGCATATTAAGGTTTAAAGATACATTTTTAATTTTTTTTGTAATTATTATTTA
* * *
87810372 TTTGTTTATCTTGTAATCCTTATTATTTATCCTATTTTGTGGTTTTGGAAA
65 TTTGTTTAT-TTGTAATCCTTATTATTTGTCCTATTTTGCGGTTTTGAAAA
* * *
87810423 GAGAGGAGGCAGTAGCATATTAAGGTTTAAAGGTACATTTTTATTTTTATTTTGCAATTATTATT
1 GAGAGGAGGCA--AGCATATTAAGGTTTAAAGATACATTTTTAATTTT-TTTTGTAATTATTATT
*
87810488 TATCTGTTTATTTTGTAATCCTTATTA-TTGTCCTATTTTG
63 TATTTGTTTA-TTTGTAATCCTTATTATTTGTCCTATTTTG
87810528 TGGTATTGTG
Statistics
Matches: 188, Mismatches: 19, Indels: 21
0.82 0.08 0.09
Matches are distributed among these distances:
110 15 0.08
111 4 0.02
112 4 0.02
113 28 0.15
114 50 0.27
115 4 0.02
117 43 0.23
118 39 0.21
119 1 0.01
ACGTcount: A:0.25, C:0.09, G:0.17, T:0.49
Consensus pattern (114 bp):
GAGAGGAGGCAAGCATATTAAGGTTTAAAGATACATTTTTAATTTTTTTTGTAATTATTATTTAT
TTGTTTATTTGTAATCCTTATTATTTGTCCTATTTTGCGGTTTTGAAAA
Found at i:87810513 original size:118 final size:115
Alignment explanation
Indices: 87810179--87810531 Score: 402
Period size: 117 Copynumber: 3.1 Consensus size: 115
87810169 GAGAAGAAGG
* * * *
87810179 TTTTGTAGTGTTGGAAGGAGAGGAGGCAA-CATCATATAAGGGTTTCAAGGTACATTTTTAGTTT
1 TTTTGTGGTTTTGGAAAGAGAGGAGGCAAGCAT-AT-TAA-GGTTTAAAGGTACATTTTTA-TTT
* * *
87810243 TTTAATT-C--TTATT-TTT-TTTGTTT-GTTTGTAATCCTTATTATTTGCCCTA
62 TTT-TTTGCAATTATTATTTATTTGTTTATTTTGTAATCCTTATTATTTGTCCTA
* * ** * *
87810292 TTTTGCGGTTTT-AAAAGAAGAGGAGGC-AGCATATTAAGGTTTAGTGATACATTTTTAATTTTT
1 TTTTGTGGTTTTGGAAAG-AGAGGAGGCAAGCATATTAAGGTTTAAAGGTACATTTTTATTTTTT
* * *
87810355 TTTGTAATTATTATTTATTTGTTTATCTTGTAATCCTTATTATTTATCCTA
65 TTTGCAATTATTATTTATTTGTTTATTTTGTAATCCTTATTATTTGTCCTA
87810406 TTTTGTGGTTTTGGAAAGAGAGGAGGCAGTAGCATATTAAGGTTTAAAGGTACATTTTTATTTTT
1 TTTTGTGGTTTTGGAAAGAGAGGAGGCA--AGCATATTAAGGTTTAAAGGTACATTTTTATTTTT
*
87810471 ATTTTGCAATTATTATTTATCTGTTTATTTTGTAATCCTTATTA-TTGTCCTA
64 -TTTTGCAATTATTATTTATTTGTTTATTTTGTAATCCTTATTATTTGTCCTA
87810523 TTTTGTGGT
1 TTTTGTGGT
87810532 ATTGTGTTGT
Statistics
Matches: 201, Mismatches: 26, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
108 2 0.01
109 5 0.02
110 16 0.08
111 8 0.04
112 9 0.04
113 28 0.14
114 42 0.21
115 4 0.02
117 47 0.23
118 40 0.20
ACGTcount: A:0.25, C:0.08, G:0.18, T:0.49
Consensus pattern (115 bp):
TTTTGTGGTTTTGGAAAGAGAGGAGGCAAGCATATTAAGGTTTAAAGGTACATTTTTATTTTTTT
TTGCAATTATTATTTATTTGTTTATTTTGTAATCCTTATTATTTGTCCTA
Found at i:87811918 original size:20 final size:19
Alignment explanation
Indices: 87811874--87811915 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
87811864 GAACAAGATT
*
87811874 AAAAGGGAGGCTGTGAATC
1 AAAAGGGAGGCTGCGAATC
87811893 AAAAGGGAGGCTGCGAATC
1 AAAAGGGAGGCTGCGAATC
87811912 AAAA
1 AAAA
87811916 AGGAAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.43, C:0.12, G:0.33, T:0.12
Consensus pattern (19 bp):
AAAAGGGAGGCTGCGAATC
Found at i:87815300 original size:44 final size:46
Alignment explanation
Indices: 87815141--87815305 Score: 145
Period size: 49 Copynumber: 3.5 Consensus size: 46
87815131 ATTCCAACGT
* *
87815141 CATGTCCCAGACATGGTCTTACACTGGCTAGCACAACAAAGTTGATGC
1 CATGTCCCAGACAT-GTCTTACACTGACTA-CACAACAAAGCTGATGC
* * * * * * * **
87815189 CATGTCCTAAACAGGTCTTACACTGACTTTCATATATCGAGGCCAATGC
1 CATGTCCCAGACATGTCTTACACTGAC-TACACA-A-CAAAGCTGATGC
* *
87815238 CATGTCCCAGACAAGTCTTACACTGAC-ACACAAC-AAGCTGACGC
1 CATGTCCCAGACATGTCTTACACTGACTACACAACAAAGCTGATGC
*
87815282 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
87815306 AGCTTGTATA
Statistics
Matches: 92, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
44 28 0.30
45 1 0.01
46 1 0.01
47 18 0.20
48 13 0.14
49 31 0.34
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTACACAACAAAGCTGATGC
Found at i:87815304 original size:93 final size:95
Alignment explanation
Indices: 87815141--87815348 Score: 255
Period size: 93 Copynumber: 2.2 Consensus size: 95
87815131 ATTCCAACGT
* * * *
87815141 CATGTCCCAGACATGGTCTTACACTGGCTAGCACAACAAAGTTGATGCCATGTCCTAAACAGGTC
1 CATGTCCCAGACA-AGTCTTACACTGACTAGCACAACAAAGCTGACGCCATGTCCTAAACAGGTC
87815206 TTACACT-GACTT-TCATATATCGAGGCCAATG
65 TTACACTAG-CTTGT-ATATATCGAGGCCAATG
* *
87815237 CCATGTCCCAGACAAGTCTTACACTGAC-A-CACAAC-AAGCTGACGCCATGTCCTAGACATGTC
1 -CATGTCCCAGACAAGTCTTACACTGACTAGCACAACAAAGCTGACGCCATGTCCTAAACAGGTC
* *
87815299 TTACACTAGCTTGTATATCTCGAGGCCGATG
65 TTACACTAGCTTGTATATATCGAGGCCAATG
* *
87815330 CATGTCCCAAACATGTCTT
1 CATGTCCCAGACAAGTCTT
87815349 GCATTAGCTC
Statistics
Matches: 99, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
92 17 0.17
93 48 0.48
94 8 0.08
95 1 0.01
96 12 0.12
97 13 0.13
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (95 bp):
CATGTCCCAGACAAGTCTTACACTGACTAGCACAACAAAGCTGACGCCATGTCCTAAACAGGTCT
TACACTAGCTTGTATATATCGAGGCCAATG
Found at i:87815344 original size:48 final size:48
Alignment explanation
Indices: 87815282--87815495 Score: 222
Period size: 46 Copynumber: 4.5 Consensus size: 48
87815272 AAGCTGACGC
*
87815282 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * * ** * *
87815330 CATGTCCCAAACATGTCTTGCATTAGC-TCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * *
87815376 TATGTCTCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGACG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * *
87815424 CATGTCCCAGACATGTCTTACACTGGCTCT-CATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
*
87815470 CATGTCCTAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
87815496 TACACATATC
Statistics
Matches: 134, Mismatches: 29, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
46 65 0.49
47 5 0.04
48 63 0.47
49 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:87815483 original size:46 final size:48
Alignment explanation
Indices: 87815184--87815495 Score: 193
Period size: 46 Copynumber: 6.6 Consensus size: 48
87815174 CAACAAAGTT
* * *
87815184 GATGCCATGTCCTAAACAGGTCTTACACT-GACTTTCATATATCGAGGCC
1 GATG-CATGTCCTAGACATGTCTTACACTAG-CTTGCATATATCGAGGCC
* * * * * * *
87815233 AATGCCATGTCCCAGACAAGTCTTACACT-GAC--ACACA-A-C-AAGCT
1 GATG-CATGTCCTAGACATGTCTTACACTAG-CTTGCATATATCGAGGCC
* * *
87815277 GACGCCATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
1 GATG-CATGTCCTAGACATGTCTTACACTAGCTTGCATATATCGAGGCC
* * * * * * * *
87815326 GATGCATGTCCCAAACATGTCTTGCATTAGC-T-C-TCGTCTCAATGCC
1 GATGCATGTCCTAGACATGTCTTACACTAGCTTGCAT-ATATCGAGGCC
* * * *
87815372 GATGTATGT-CTCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCC
1 GATGCATGTCCT-AGACATGTCTTACACTAGCTTGCATATATCGAGGCC
* * * *
87815420 GACGCATGTCCCAGACATGTCTTACACTGGCTCT-CATA-AT-GTGGCC
1 GATGCATGTCCTAGACATGTCTTACACTAGCT-TGCATATATCGAGGCC
87815466 GATGCATGTCCTAGACATGTCTTACACTAG
1 GATGCATGTCCTAGACATGTCTTACACTAG
87815496 TACACATATC
Statistics
Matches: 204, Mismatches: 46, Indels: 29
0.73 0.16 0.10
Matches are distributed among these distances:
44 29 0.14
45 4 0.02
46 66 0.32
47 6 0.03
48 62 0.30
49 37 0.18
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCATGTCCTAGACATGTCTTACACTAGCTTGCATATATCGAGGCC
Found at i:87815505 original size:94 final size:93
Alignment explanation
Indices: 87815282--87815495 Score: 290
Period size: 94 Copynumber: 2.3 Consensus size: 93
87815272 AAGCTGACGC
*
87815282 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAAACATGTC
1 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGACGCATGTCCCAAACATGTC
* * *
87815347 TTGCATTAGCTCTCGTCTCAATGCCGATG
66 TTACACTAGCTCTCG-ATCAATGCCGATG
* * *
87815376 TATGT-CTCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGACGCATGTCCCAGACATGT
1 CATGTCCT-AGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGACGCATGTCCCAAACATGT
*
87815440 CTTACACTGGCTCTC-AT-AATGTGGCCGATG
65 CTTACACTAGCTCTCGATCAA--T-GCCGATG
87815470 CATGTCCTAGACATGTCTTACACTAG
1 CATGTCCTAGACATGTCTTACACTAG
87815496 TACACATATC
Statistics
Matches: 105, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 3 0.03
94 97 0.92
95 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (93 bp):
CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGACGCATGTCCCAAACATGTC
TTACACTAGCTCTCGATCAATGCCGATG
Found at i:87818311 original size:18 final size:18
Alignment explanation
Indices: 87818288--87818323 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
87818278 TTCTTGGGTG
87818288 GTAGTCGATTATCAACTC
1 GTAGTCGATTATCAACTC
**
87818306 GTAGTCTTTTATCAACTC
1 GTAGTCGATTATCAACTC
87818324 CAACCATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
GTAGTCGATTATCAACTC
Found at i:87821796 original size:49 final size:49
Alignment explanation
Indices: 87821740--87821868 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 49
87821730 ATCAAAGTCG
* * *
87821740 ATGCCATGTACTAGACAGGTCCTACACTGACTTTTATATATCGACGCCA
1 ATGCCATGTCCTAGACAGGTCTTACACTGACTCTTATATATCGACGCCA
* * * * * * *
87821789 ATGCCATGTCCTAGATAGGTCTTGCGCTGGCTCTTATATATCGATGTCG
1 ATGCCATGTCCTAGACAGGTCTTACACTGACTCTTATATATCGACGCCA
*
87821838 ATGCCATGTCCTAGACAAGTCTTACACTGAC
1 ATGCCATGTCCTAGACAGGTCTTACACTGAC
87821869 ACACAACAAG
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
49 65 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (49 bp):
ATGCCATGTCCTAGACAGGTCTTACACTGACTCTTATATATCGACGCCA
Found at i:87827056 original size:26 final size:26
Alignment explanation
Indices: 87827027--87827134 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
87827017 TTATACAAAT
87827027 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
87827053 TGATAATTGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87827079 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87827105 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87827131 TGAT
1 TGAT
87827135 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87828766 original size:27 final size:27
Alignment explanation
Indices: 87828726--87828866 Score: 130
Period size: 27 Copynumber: 5.2 Consensus size: 27
87828716 AGGAAGCGTC
*
87828726 CTGGTGGCTATGCCACAATTATCGGAT
1 CTGGTGGCTCTGCCACAATTATCGGAT
*
87828753 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCGGAT
* * * *
87828779 CCTGATGGCTATCCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCGGAT
*
87828807 CTGGTGGCTCTGCCAC-ATATATC-TATT
1 CTGGTGGCTCTGCCACAAT-TATCGGA-T
*
87828834 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATC-GGAT
87828861 CTGGTG
1 CTGGTG
87828867 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
26 10 0.10
27 80 0.83
28 6 0.06
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCGGAT
Found at i:87828808 original size:54 final size:54
Alignment explanation
Indices: 87828723--87828866 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
87828713 TAGAGGAAGC
*
87828723 GTCCTGGTGGCTATGCCACAATTATCGGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
87828777 GTCCTGATGGCTATCCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
87828831 ATTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
87828867 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:87828878 original size:81 final size:80
Alignment explanation
Indices: 87828726--87828884 Score: 191
Period size: 81 Copynumber: 2.0 Consensus size: 80
87828716 AGGAAGCGTC
*
87828726 CTGGTGGCTATGCCACAATTATCGGATCTGGTGGCTCTGCCACATATATCTGTCCTGATGGCTAT
1 CTGGTGGCTATGCCACAATTATCGGATCTGGTGGCTCTGCCACATATATCTGTCCTGATGACTAT
87828791 CCCACAATTATCTGAT
66 CCCACAA-TATCTGAT
* * * *
87828807 CTGGTGGCTCTGCCAC-ATATATC-TATTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCGGA-TCTGGTGGCTCTGCCACATATATCTGT-CCTGATGAC
*
87828869 T-TCGTCACAATATCTG
63 TATC-CCACAATATCTG
87828885 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
80 19 0.28
81 49 0.72
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCGGATCTGGTGGCTCTGCCACATATATCTGTCCTGATGACTAT
CCCACAATATCTGAT
Found at i:87829979 original size:32 final size:31
Alignment explanation
Indices: 87829943--87830012 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 31
87829933 AAGAATTTTG
*
87829943 TTTTTTTATGAAAATATGTTCTAGCAAGTTT
1 TTTTTTTATGAAAATATGTTCTAACAAGTTT
87829974 ATTTTTTTATGAAAATATGTTCTAACAAGTTT
1 -TTTTTTTATGAAAATATGTTCTAACAAGTTT
87830006 TTTTTTT
1 TTTTTTT
87830013 GAATGGTATA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 7 0.19
32 30 0.81
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.56
Consensus pattern (31 bp):
TTTTTTTATGAAAATATGTTCTAACAAGTTT
Found at i:87834876 original size:27 final size:27
Alignment explanation
Indices: 87834845--87834950 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
87834835 TAAAATTGAC
*
87834845 AAATGATTGTTTTTCCCTTATGTGGTA
1 AAATGATTGTTTTGCCCTTATGTGGTA
*
87834872 AAATGATTATTTTGCCCTTATGTGGTA
1 AAATGATTGTTTTGCCCTTATGTGGTA
*
87834899 AAATGATTGTTTTGCCCTTATGTGATA
1 AAATGATTGTTTTGCCCTTATGTGGTA
* * * * *
87834926 AGATGACTGCTTTACCCCTATGTGG
1 AAATGATTGTTTTGCCCTTATGTGG
87834951 AGTATATATA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCTTATGTGGTA
Found at i:87838796 original size:37 final size:37
Alignment explanation
Indices: 87838727--87838797 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
87838717 TTTAAATTAC
* **
87838727 AAGTATATGGTTATTTTATATGTGAATTAAAATGAAT
1 AAGTATATGGTTATTTGATATGTGAACGAAAATGAAT
*
87838764 AAGTATATGGTTATTTGATATGTGTACGAAAATG
1 AAGTATATGGTTATTTGATATGTGAACGAAAATG
87838798 TTCAAAAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.38, C:0.01, G:0.20, T:0.41
Consensus pattern (37 bp):
AAGTATATGGTTATTTGATATGTGAACGAAAATGAAT
Found at i:87841133 original size:13 final size:13
Alignment explanation
Indices: 87841096--87841144 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
87841086 TACATAATAT
*
87841096 GTTCACATATAGG
1 GTTCACATATAAG
** *
87841109 GTTTGCACATAAG
1 GTTCACATATAAG
87841122 GTTCACATATAAG
1 GTTCACATATAAG
*
87841135 GTTCTCATAT
1 GTTCACATAT
87841145 TGAATCACAT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (13 bp):
GTTCACATATAAG
Found at i:87841350 original size:24 final size:23
Alignment explanation
Indices: 87841292--87841351 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
87841282 ATACTTATGT
* *
87841292 ACATAAGTGTTCGCATACATATTT
1 ACATAAGT-TTCGCATACATACTC
* *
87841316 ACCTAAAGTTTCGCATACTTACTC
1 ACAT-AAGTTTCGCATACATACTC
87841340 ACATAAGGTTTC
1 ACATAA-GTTTC
87841352 ACATGTTAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
23 2 0.07
24 23 0.79
25 4 0.14
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (23 bp):
ACATAAGTTTCGCATACATACTC
Found at i:87841980 original size:40 final size:40
Alignment explanation
Indices: 87841931--87842017 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
87841921 TTGATTTTGT
* *
87841931 TGGCCTTTTTAAATTATCATCCC-AGTTTACCCAGTTTCGA
1 TGGCATTTTTAAACTATCATCCCGA-TTTACCCAGTTTCGA
87841971 TGGCATTTTTAAACTATCATCCCGATTTACCCAGTTTCGA
1 TGGCATTTTTAAACTATCATCCCGATTTACCCAGTTTCGA
87842011 TGGCATT
1 TGGCATT
87842018 GCCACCTACT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 43 0.98
41 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (40 bp):
TGGCATTTTTAAACTATCATCCCGATTTACCCAGTTTCGA
Found at i:87844374 original size:17 final size:18
Alignment explanation
Indices: 87844340--87844376 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
87844330 GCCCATGTTG
87844340 CATGCCCATGTGGGCCCA
1 CATGCCCATGTGGGCCCA
*
87844358 CATGCCCGTGT-GGCCCA
1 CATGCCCATGTGGGCCCA
87844375 CA
1 CA
87844377 CGGCCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.16, C:0.41, G:0.27, T:0.16
Consensus pattern (18 bp):
CATGCCCATGTGGGCCCA
Found at i:87860547 original size:40 final size:40
Alignment explanation
Indices: 87860460--87860608 Score: 223
Period size: 39 Copynumber: 3.8 Consensus size: 40
87860450 CGATATAGCT
* **
87860460 ACTCGCTCAAATGCCTTCGGGACTTAG-CC-GTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
*
87860498 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
*
87860538 ACTCGCACAAATGCCTTC-GGACTTAGCCCGAAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
*
87860577 ACTCGCACAAATGCCTTCGGGACTTGGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
87860609 TTATCATCCG
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 25 0.25
39 40 0.40
40 35 0.35
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
Found at i:87860573 original size:39 final size:39
Alignment explanation
Indices: 87860435--87860607 Score: 219
Period size: 38 Copynumber: 4.5 Consensus size: 39
87860425 CAACCAAGTA
** * *
87860435 CCTTCGGGGTTTAG-CCGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGAAATAG-TAACTCGCACAAATG
** *
87860473 CCTTCGGGACTTAG-CCGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGAAATAGTAACTCGCACAAATG
87860511 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GAAATAGTAACTCGCACAAATG
87860551 CCTTC-GGACTTAGCCCGAAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCG-AAATAGTAACTCGCACAAATG
*
87860590 CCTTCGGGACTTGGCCCG
1 CCTTCGGGACTTAGCCCG
87860608 GTTATCATCC
Statistics
Matches: 121, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
37 1 0.01
38 46 0.38
39 39 0.32
40 35 0.29
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGAAATAGTAACTCGCACAAATG
Found at i:87860592 original size:79 final size:78
Alignment explanation
Indices: 87860460--87860608 Score: 228
Period size: 79 Copynumber: 1.9 Consensus size: 78
87860450 CGATATAGCT
* ** *
87860460 ACTCGCTCAAATGCCTTCGGGACTTAGCCGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAG
87860525 CCCGGAAATAGTA
66 CCCGGAAATAGTA
87860538 ACTCGCACAAATGCCTTC-GGACTTAGCCCGAAAATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAG-CCG-AAATAGTAACTCGCACAAATGCCTTCGGGACTT
*
87860602 GGCCCGG
64 AGCCCGG
87860609 TTATCATCCG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
77 8 0.12
78 20 0.31
79 36 0.56
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (78 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAG
CCCGGAAATAGTA
Found at i:87862450 original size:29 final size:28
Alignment explanation
Indices: 87862414--87862491 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
87862404 TCATGAGATT
87862414 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
87862444 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
87862471 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
87862492 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:87862711 original size:145 final size:145
Alignment explanation
Indices: 87862469--87862742 Score: 512
Period size: 145 Copynumber: 1.9 Consensus size: 145
87862459 GTTTAAAGTA
*
87862469 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* *
87862534 ATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
87862599 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
87862614 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
*
87862679 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
87862743 ACCTCGAGTT
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 125 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:87867952 original size:27 final size:27
Alignment explanation
Indices: 87867922--87868099 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87867912 ATATTGAGTC
* * * *
87867922 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87867949 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87867976 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87868004 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87868031 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87868058 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87868085 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87868100 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87868061 original size:82 final size:81
Alignment explanation
Indices: 87867943--87868098 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87867933 TGCTATATAA
* *
87867943 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87868008 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87868025 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87868089 CACTTAGTGC
65 CACTTAGTGC
87868099 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87878580 original size:24 final size:23
Alignment explanation
Indices: 87878531--87878588 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
87878521 ATGATTTAAA
*
87878531 AAAATATTCATATTTATATAATT
1 AAAATATTTATATTTATATAATT
* *
87878554 AAAATATTTATATTTTTATACTAT
1 AAAATATTTATATTTATATAAT-T
87878578 AAAATATTTAT
1 AAAATATTTAT
87878589 TATTAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 19 0.61
24 12 0.39
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (23 bp):
AAAATATTTATATTTATATAATT
Found at i:87878662 original size:19 final size:19
Alignment explanation
Indices: 87878631--87878680 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
87878621 TATATTAAGA
*
87878631 ATATTATTTAAAACTTAAAAT
1 ATATTA-TTAAAA-TAAAAAT
87878652 -TATTATTAAAATAAAAAT
1 ATATTATTAAAATAAAAAT
*
87878670 ATAATATTAAA
1 ATATTATTAAA
87878681 TATTTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 6 0.23
19 15 0.58
20 5 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATATTATTAAAATAAAAAT
Found at i:87879676 original size:22 final size:24
Alignment explanation
Indices: 87879646--87879689 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
87879636 TTAATTTATT
*
87879646 AAATAATATATTTTTA-TAATTTC
1 AAATAATATATTTATACTAATTTC
87879669 AAAT-ATATATTTATACTAATT
1 AAATAATATATTTATACTAATT
87879690 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (24 bp):
AAATAATATATTTATACTAATTTC
Found at i:87881066 original size:7 final size:7
Alignment explanation
Indices: 87881056--87881093 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
87881046 GGGGTTTAAT
*
87881056 TTTAGAA
1 TTTAGAG
87881063 TTTAGAG
1 TTTAGAG
87881070 TTTAGAG
1 TTTAGAG
*
87881077 TTTAGGG
1 TTTAGAG
87881084 TTTAGAG
1 TTTAGAG
87881091 TTT
1 TTT
87881094 GGAATTCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (7 bp):
TTTAGAG
Found at i:87881123 original size:13 final size:13
Alignment explanation
Indices: 87881108--87881192 Score: 55
Period size: 13 Copynumber: 6.5 Consensus size: 13
87881098 TTCAATATTC
*
87881108 AAGGTTTGGGTTC
1 AAGGTTTGGGTTT
* * *
87881121 AAGATTTAGTTTT
1 AAGGTTTGGGTTT
*
87881134 GA-GTTTGGGTTT
1 AAGGTTTGGGTTT
* *
87881146 GAGTTTTTGGGTTT
1 AAG-GTTTGGGTTT
*
87881160 AAGGTTTGAGGTTC
1 AAGGTTTG-GGTTT
* *
87881174 GAGGTTTAGGTTT
1 AAGGTTTGGGTTT
87881187 AAGGTT
1 AAGGTT
87881193 AAGGGTTAGG
Statistics
Matches: 53, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
12 9 0.17
13 23 0.43
14 21 0.40
ACGTcount: A:0.18, C:0.02, G:0.34, T:0.46
Consensus pattern (13 bp):
AAGGTTTGGGTTT
Found at i:87881167 original size:27 final size:27
Alignment explanation
Indices: 87881108--87881192 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
87881098 TTCAATATTC
* * *
87881108 AAGGTTTG-GGTTCAAGATTTAGTTTT
1 AAGGTTTGAGGTTCGAGGTTTAGGTTT
* * * *
87881134 GA-GTTTG-GGTTTGAGTTTTTGGGTTT
1 AAGGTTTGAGGTTCGAG-GTTTAGGTTT
87881160 AAGGTTTGAGGTTCGAGGTTTAGGTTT
1 AAGGTTTGAGGTTCGAGGTTTAGGTTT
87881187 AAGGTT
1 AAGGTT
87881193 AAGGGTTAGG
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
25 11 0.24
26 9 0.20
27 19 0.41
28 7 0.15
ACGTcount: A:0.18, C:0.02, G:0.34, T:0.46
Consensus pattern (27 bp):
AAGGTTTGAGGTTCGAGGTTTAGGTTT
Found at i:87881171 original size:7 final size:7
Alignment explanation
Indices: 87881131--87881192 Score: 51
Period size: 7 Copynumber: 9.3 Consensus size: 7
87881121 AAGATTTAGT
87881131 TTTGA-G
1 TTTGAGG
87881137 TTTG-GG
1 TTTGAGG
*
87881143 TTTGAGTT
1 TTTGAG-G
87881151 TTTG-GG
1 TTTGAGG
*
87881157 TTTAAGG
1 TTTGAGG
87881164 TTTGAGG
1 TTTGAGG
*
87881171 TTCGAGG
1 TTTGAGG
87881178 TTT-AGG
1 TTTGAGG
*
87881184 TTTAAGG
1 TTTGAGG
87881191 TT
1 TT
87881193 AAGGGTTAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
6 18 0.40
7 23 0.51
8 4 0.09
ACGTcount: A:0.15, C:0.02, G:0.35, T:0.48
Consensus pattern (7 bp):
TTTGAGG
Found at i:87888145 original size:824 final size:825
Alignment explanation
Indices: 87886026--87889328 Score: 6563
Period size: 825 Copynumber: 4.0 Consensus size: 825
87886016 TGATTGTCAA
87886026 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
1 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
87886091 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
66 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
87886156 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
131 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
87886221 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
196 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
87886286 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
261 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
87886351 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
326 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
87886416 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
391 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
87886481 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
456 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
87886546 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
521 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
87886611 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
586 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
87886676 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
651 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
87886741 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
716 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
87886806 AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
781 AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
87886851 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
1 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
87886916 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
66 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
87886981 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
131 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
87887046 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
196 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
*
87887111 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATAATCTATCACACAA
261 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
87887176 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
326 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
87887241 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
391 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
87887306 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
456 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
87887371 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
521 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
87887436 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
586 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
87887501 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
651 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
87887566 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
716 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
87887631 AGAACCACGAATTTGAAGTC-AAAAAATTATTCGGATTAAGTTTT
781 AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
87887675 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
1 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
87887740 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
66 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
87887805 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
131 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
87887870 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
196 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
87887935 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
261 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
87888000 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
326 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
87888065 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
391 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
87888130 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
456 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
87888195 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
521 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
87888260 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
586 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
87888325 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
651 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
87888390 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
716 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
87888455 AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
781 AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
87888500 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
1 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
87888565 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
66 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
87888630 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
131 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
87888695 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
196 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
87888760 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
261 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
87888825 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
326 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
87888890 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
391 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
87888955 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
456 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
87889020 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
521 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
*
87889085 GTGGTTGCGAAACCACAACTCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
586 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
87889150 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
651 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
* *
87889215 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACAGAATGATGGTTTT
716 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
87889280 AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
781 AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
87889325 AAGG
1 AAGG
87889329 TTTATTTATT
Statistics
Matches: 2472, Mismatches: 5, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
824 823 0.33
825 1649 0.67
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (825 bp):
AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
Found at i:87891018 original size:39 final size:39
Alignment explanation
Indices: 87890974--87891288 Score: 495
Period size: 39 Copynumber: 8.1 Consensus size: 39
87890964 ATTATATTAT
* *
87890974 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
87891013 CAGCACGAAGCCTGCGGGACTTTGGCCCAGATACTTTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
87891052 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
87891091 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
87891130 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
87891169 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
87891208 CAGCACGAAGCCTGCGAGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
87891247 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
87891286 CAG
1 CAG
87891289 TGTCTTGCAT
Statistics
Matches: 253, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 253 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:87893438 original size:67 final size:68
Alignment explanation
Indices: 87893364--87893514 Score: 168
Period size: 67 Copynumber: 2.2 Consensus size: 68
87893354 CATCATGTGT
* * * *
87893364 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTA-ACCA
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
87893426 TGTAG
64 TGTAG
* * * *
87893431 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGTATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
87893494 GTAG
65 GTAG
87893498 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
87893515 TAAACTGGCT
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
63 23 0.33
64 3 0.04
65 3 0.04
66 3 0.04
67 37 0.53
68 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:87898250 original size:36 final size:36
Alignment explanation
Indices: 87898203--87898272 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
87898193 GAGAGCTACA
*
87898203 AGATAAACTGGCTAGGTCACATGGGTGGTACTAATG
1 AGATAAACTGGCCAGGTCACATGGGTGGTACTAATG
87898239 AGATAAACTGGCCAGGTCACATGGGTGGTACTAA
1 AGATAAACTGGCCAGGTCACATGGGTGGTACTAA
87898273 GTGTTCACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (36 bp):
AGATAAACTGGCCAGGTCACATGGGTGGTACTAATG
Found at i:87900713 original size:4 final size:4
Alignment explanation
Indices: 87900704--87900742 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
87900694 AATAAACTTA
*
87900704 ATAC ATAC ATAC ATAC ATAC GTAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
87900743 TACCAAAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:87902601 original size:51 final size:51
Alignment explanation
Indices: 87902546--87902642 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
87902536 TGAACCTTAG
* *
87902546 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGTCCACTTTGT
1 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCACTTTGT
87902597 GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCAC
87902643 CGTGTATCCG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 1 0.02
51 42 0.98
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCACTTTGT
Found at i:87903755 original size:48 final size:48
Alignment explanation
Indices: 87903666--87903849 Score: 165
Period size: 48 Copynumber: 3.8 Consensus size: 48
87903656 ACCATGATTA
* * * * *
87903666 ACGAGATCCCGTGTAAGACCATGTCCGGGACATAGCATCGGCATCGAT
1 ACGAGATCCTGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
* * * * *
87903714 ACGCGATCCTGTGTAAGACCATATCAGGGATATGGCTTCGGCATCGAT
1 ACGAGATCCTGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
* * * * *
87903762 AAGTGAT-TTCGTATAAGACCATGTCTGGGACATGGCATCGGCACCGAT
1 ACGAGATCCT-GTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
* * * *
87903810 TCGAGA-CTTTGTATAAGACCATATCTGGGATATGACATCG
1 ACGAGATC-CTGTATAAGACCATATCTGGGACATGGCATCG
87903850 ATGTGTAGTT
Statistics
Matches: 111, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
48 108 0.97
49 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (48 bp):
ACGAGATCCTGTATAAGACCATATCTGGGACATGGCATCGGCATCGAT
Found at i:87909602 original size:30 final size:31
Alignment explanation
Indices: 87909544--87909603 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
87909534 CTCGTTACAA
* *
87909544 TCTGGTGGCTTCGCCACATATATATATCTGT
1 TCTGGTGGCCTAGCCACATATATATATCTGT
*
87909575 TCTGGTGGCCTAGCCACA-ATCTATATCTG
1 TCTGGTGGCCTAGCCACATATATATATCTG
87909604 GTGACTTCGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (31 bp):
TCTGGTGGCCTAGCCACATATATATATCTGT
Found at i:87914224 original size:40 final size:40
Alignment explanation
Indices: 87914141--87914403 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
87914131 TCCTCGTTCA
* * * *
87914141 AATGCCTTCGGGACATAGCCC-GATTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGA-TTTAATAACTCGCACG
* *
87914180 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
87914220 AATGCCTTCGGGACTTAACCCAGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
87914260 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
87914300 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
87914340 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
87914380 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
87914404 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 35 0.18
40 155 0.78
41 8 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:87921917 original size:40 final size:40
Alignment explanation
Indices: 87921834--87922096 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
87921824 TCCTCGTTCA
* * * *
87921834 AATGCCTTCGGGACATAGCCC-GATTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGA-TTTAATAACTCGCACG
* *
87921873 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
87921913 AATGCCTTCGGGACTTAACCCAGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
87921953 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
87921993 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
87922033 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
87922073 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
87922097 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 35 0.18
40 155 0.78
41 8 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:87924942 original size:19 final size:21
Alignment explanation
Indices: 87924904--87924942 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
87924894 GAACAGTGAG
*
87924904 AGAGTTCTGTGTTACCGAAGT
1 AGAGTTCTGTATTACCGAAGT
87924925 AGAGTT-TGTATT-CCGAAG
1 AGAGTTCTGTATTACCGAAG
87924943 GACTCTGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 5 0.29
21 6 0.35
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (21 bp):
AGAGTTCTGTATTACCGAAGT
Found at i:87927325 original size:29 final size:29
Alignment explanation
Indices: 87927284--87927340 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
87927274 AAGAGGTGGG
87927284 AAAAGAGAGGTGGGTAAGCTACAAAGCTA
1 AAAAGAGAGGTGGGTAAGCTACAAAGCTA
*
87927313 AAAAGAGAGGTGGGTAAGCTATAAAGCT
1 AAAAGAGAGGTGGGTAAGCTACAAAGCT
87927341 TAGTAACTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.44, C:0.09, G:0.32, T:0.16
Consensus pattern (29 bp):
AAAAGAGAGGTGGGTAAGCTACAAAGCTA
Found at i:87929822 original size:58 final size:57
Alignment explanation
Indices: 87929683--87929823 Score: 149
Period size: 57 Copynumber: 2.5 Consensus size: 57
87929673 ATGTATACAA
* ** ** *
87929683 CAGGATTACCAGTCCAGGCTAAATCCTTTTTATAACATATACTCTAAGGAGCTTGAT
1 CAGGATTACCCGTCCAGGCTAAATCCAATCCATAACATATACTCGAAGGAGCTTGAT
* * * * *
87929740 CTGAATTACCCGTCTAGGCTAAATCCAATCCATAACATATGCTCGAGAGGA-CTTATAT
1 CAGGATTACCCGTCCAGGCTAAATCCAATCCATAACATATACTCGA-AGGAGCTT-GAT
*
87929798 CAGGATTACCCGTCCGGGCTAAATCC
1 CAGGATTACCCGTCCAGGCTAAATCC
87929824 TTTCTATAAT
Statistics
Matches: 67, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
57 39 0.58
58 28 0.42
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (57 bp):
CAGGATTACCCGTCCAGGCTAAATCCAATCCATAACATATACTCGAAGGAGCTTGAT
Found at i:87938115 original size:6 final size:6
Alignment explanation
Indices: 87938097--87938193 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
87938087 AAGAAACATT
* *
87938097 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
87938146 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ACCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
87938194 GTAACAGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 60 0.83
7 6 0.08
8 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:87938142 original size:31 final size:31
Alignment explanation
Indices: 87938081--87938203 Score: 151
Period size: 31 Copynumber: 4.0 Consensus size: 31
87938071 TAACCAATTA
* * *
87938081 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * *
87938111 CAGAATCAGAATCAGAATTAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
87938142 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
* *
87938173 CAAAATCAGAACCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
87938204 AAAAAATGAG
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
30 15 0.19
31 63 0.79
32 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:87938387 original size:27 final size:26
Alignment explanation
Indices: 87938345--87938446 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
87938335 GCTCAGTTAT
* *
87938345 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
87938372 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
87938398 TAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
87938426 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
87938447 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.09
27 53 0.80
28 7 0.11
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:87938631 original size:22 final size:22
Alignment explanation
Indices: 87938603--87938667 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
87938593 GGCAAATAGT
*
87938603 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
87938625 TTGGCACAGAGCTAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
87938647 TTGACAGAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
87938668 AAGGCTTTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:87939149 original size:27 final size:27
Alignment explanation
Indices: 87939092--87939520 Score: 538
Period size: 27 Copynumber: 16.3 Consensus size: 27
87939082 GGGGCAAAAT
* * *
87939092 GGTAATTTTACCC-ACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87939117 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
87939144 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
87939171 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87939198 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
87939225 GATAA-T-T---CT----GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
87939243 GGTAATTCTACCCTACAGGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGGTATTTC
*
87939271 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
87939298 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
87939325 AGTAATTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
87939352 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
87939379 GATAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
87939406 GATAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
87939433 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
87939460 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
87939487 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
87939514 GGTAATT
1 GGTAATT
87939521 TTGTAAATCG
Statistics
Matches: 356, Mismatches: 36, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.03
19 1 0.00
20 1 0.00
22 2 0.01
23 2 0.01
25 12 0.03
26 4 0.01
27 297 0.83
28 25 0.07
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Done.