Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 266 of 316
Found at i:87939239 original size:18 final size:18
Alignment explanation
Indices: 87939216--87939251 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
87939206 TACCCTATAG
87939216 GGGTATTGCGATAATTCT
1 GGGTATTGCGATAATTCT
* *
87939234 GGGTATTTCGGTAATTCT
1 GGGTATTGCGATAATTCT
87939252 ACCCTACAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.11, G:0.28, T:0.42
Consensus pattern (18 bp):
GGGTATTGCGATAATTCT
Found at i:87939253 original size:45 final size:46
Alignment explanation
Indices: 87939189--87939279 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 46
87939179 TACCCTACAG
*
87939189 GGGTATTTCGGTAATTCTACCCTATA-GGGGTATTGCGATAATTCT
1 GGGTATTTCGGTAATTCTACCCTACAGGGGGTATTGCGATAATTCT
* *
87939234 GGGTATTTCGGTAATTCTACCCTACAGGGGGTATTTCGGTAATTCT
1 GGGTATTTCGGTAATTCTACCCTACAGGGGGTATTGCGATAATTCT
87939280 ACCTTACAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 25 0.60
46 17 0.40
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.37
Consensus pattern (46 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGGTATTGCGATAATTCT
Found at i:87939534 original size:27 final size:27
Alignment explanation
Indices: 87939502--87939870 Score: 316
Period size: 27 Copynumber: 13.7 Consensus size: 27
87939492 TTCTACCCTA
**
87939502 CAAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **** **
87939529 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
87939556 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *** **
87939583 TGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
87939610 CGAGGGTA-TTTAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
87939636 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
87939662 CTAGGGGTATTTTGATAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
87939690 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
87939717 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
87939743 CAAATGGTATTTTAGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * ** *
87939771 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
87939798 CAAGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
87939825 CAAGGGTATTTTAGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
87939851 CTAGGGGTATTTT-GTAATTT
1 C-AAGGGTATTTTGGTAATTT
87939871 GGTAAATTAA
Statistics
Matches: 286, Mismatches: 50, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
26 29 0.10
27 256 0.90
28 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:87939752 original size:81 final size:81
Alignment explanation
Indices: 87939613--87939870 Score: 369
Period size: 81 Copynumber: 3.2 Consensus size: 81
87939603 TACAGGTCGA
* * * * * *
87939613 GGGTA-TTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-G
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG
*
87939676 ATAATTTTACAAACCAG
66 -TAATTTTACAAACTAG
*
87939693 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAATGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG
*
87939758 TAATTTTACAAATTAG
66 TAATTTTACAAACTAG
** * *
87939774 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG
87939839 TAATTTTACAAACTAG
66 TAATTTTACAAACTAG
87939855 GGGTATTTT-GTAATTT
1 GGGTATTTTGGTAATTT
87939871 GGTAAATTAA
Statistics
Matches: 161, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
80 12 0.07
81 148 0.92
82 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG
TAATTTTACAAACTAG
Found at i:87945872 original size:40 final size:40
Alignment explanation
Indices: 87945791--87946008 Score: 323
Period size: 40 Copynumber: 5.5 Consensus size: 40
87945781 CAACCAAGTA
** * *
87945791 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAG-TAACTCGCACAAATG
* ** *
87945830 CCTTCGGGACTTAGCCTGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
87945870 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
87945910 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
* *
87945950 CCTTCGGGACTTAGCCTGGAAATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
87945990 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
87946009 TTATCATCCG
Statistics
Matches: 164, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.08
40 151 0.92
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:87954099 original size:40 final size:40
Alignment explanation
Indices: 87954018--87954195 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
87954008 CAACCAAGTA
** *
87954018 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
87954057 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
87954097 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
87954137 CCTTCGGGACTTAGCCCGAAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
87954177 CCTTCGGGACTTGGCCCGG
1 CCTTCGGGACTTAGCCCGG
87954196 TTATCATCCG
Statistics
Matches: 126, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.10
40 113 0.90
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:87956039 original size:29 final size:28
Alignment explanation
Indices: 87956003--87956080 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
87955993 TCATGAGATT
87956003 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
87956033 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
87956060 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
87956081 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:87956300 original size:145 final size:145
Alignment explanation
Indices: 87956058--87956331 Score: 512
Period size: 145 Copynumber: 1.9 Consensus size: 145
87956048 GTTTAAAGTA
*
87956058 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* *
87956123 ATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
87956188 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
87956203 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
*
87956268 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
87956332 ACCTCGAGTT
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 125 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:87961752 original size:27 final size:27
Alignment explanation
Indices: 87961722--87961899 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87961712 ATATTGAGTC
* * * *
87961722 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87961749 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87961776 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87961804 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87961831 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87961858 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87961885 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87961900 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87961861 original size:82 final size:81
Alignment explanation
Indices: 87961743--87961898 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87961733 TGCTATATAA
* *
87961743 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87961808 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87961825 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87961889 CACTTAGTGC
65 CACTTAGTGC
87961899 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87969816 original size:27 final size:27
Alignment explanation
Indices: 87969786--87969963 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87969776 ATATTGAGTC
* * * *
87969786 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87969813 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87969840 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87969868 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87969895 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87969922 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87969949 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87969964 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87969925 original size:82 final size:81
Alignment explanation
Indices: 87969807--87969962 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87969797 TGCTATATAA
* *
87969807 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87969872 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87969889 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87969953 CACTTAGTGC
65 CACTTAGTGC
87969963 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87983006 original size:23 final size:21
Alignment explanation
Indices: 87982951--87983007 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 21
87982941 TGAGTTTATT
*
87982951 TGTTTTTTTCTTTTTCTTTTA
1 TGTTTTTTTATTTTTCTTTTA
*
87982972 TGTTTATGTTTATTTTTCTTTTT
1 TGTTT-T-TTTATTTTTCTTTTA
87982995 TAGTTGTTTTTAT
1 T-GTT-TTTTTAT
87983008 AGTTATTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 5 0.17
22 1 0.03
23 19 0.63
24 4 0.13
25 1 0.03
ACGTcount: A:0.09, C:0.05, G:0.09, T:0.77
Consensus pattern (21 bp):
TGTTTTTTTATTTTTCTTTTA
Found at i:87985977 original size:16 final size:16
Alignment explanation
Indices: 87985958--87986003 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 16
87985948 AAAAAATTAA
87985958 AAAACTAAATTAGTAC
1 AAAACTAAATTAGTAC
87985974 AAAAC--AATTAGT--
1 AAAACTAAATTAGTAC
87985986 -AAACTAAATTAGTAC
1 AAAACTAAATTAGTAC
87986001 AAA
1 AAA
87986004 TCGTATCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
11 4 0.16
13 7 0.28
14 7 0.28
16 7 0.28
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.24
Consensus pattern (16 bp):
AAAACTAAATTAGTAC
Found at i:87986786 original size:18 final size:18
Alignment explanation
Indices: 87986763--87986799 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
87986753 CTTGACCCAT
*
87986763 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGAAAACAG
87986781 TGCAGTAACAGAAAACAG
1 TGCAGTAACAGAAAACAG
87986799 T
1 T
87986800 ATGCAAGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.16, G:0.22, T:0.16
Consensus pattern (18 bp):
TGCAGTAACAGAAAACAG
Found at i:87987183 original size:27 final size:27
Alignment explanation
Indices: 87987131--87987183 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
87987121 ACATAGGGGC
* *
87987131 AAAATAGTCATTTTACCACATAAGGGA
1 AAAATAGTCATTTCACCAAATAAGGGA
* *
87987158 AAAATAGTCATTTCATCAAATTAGGG
1 AAAATAGTCATTTCACCAAATAAGGG
87987184 TCTAGGTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (27 bp):
AAAATAGTCATTTCACCAAATAAGGGA
Found at i:87989540 original size:98 final size:98
Alignment explanation
Indices: 87989371--87989564 Score: 343
Period size: 98 Copynumber: 2.0 Consensus size: 98
87989361 TCATAAAGAA
* * * *
87989371 AATTAAAAACTGTATAAATAAAAGGGACTTTGAGAAACTAATTTCTAATCTCAGTTAAATGAAGA
1 AATTAAAAACTGCATAAATAAAAGGGACTTTGAAAAACTAATTTCTAAACTCAGTTAAACGAAGA
*
87989436 CATGGGTGATTAGCTTGCTTTGGTGATTATACG
66 CATGGGTGATTAGCTTGCGTTGGTGATTATACG
87989469 AATTAAAAACTGCATAAATAAAAGGGACTTTGAAAAACTAATTTCTAAACTCAGTTAAACGAAGA
1 AATTAAAAACTGCATAAATAAAAGGGACTTTGAAAAACTAATTTCTAAACTCAGTTAAACGAAGA
87989534 CATGGGTGATTAGCTTGCGTTGGTGATTATA
66 CATGGGTGATTAGCTTGCGTTGGTGATTATA
87989565 AGTAATTCCT
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (98 bp):
AATTAAAAACTGCATAAATAAAAGGGACTTTGAAAAACTAATTTCTAAACTCAGTTAAACGAAGA
CATGGGTGATTAGCTTGCGTTGGTGATTATACG
Found at i:87992781 original size:26 final size:24
Alignment explanation
Indices: 87992752--87992819 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 24
87992742 TGTTTTATTT
87992752 AATTAACTTTATTTTATAAATTACTA
1 AATTAACTTTATTTTATAAATTA--A
* *
87992778 AATTAACCTTGATTTTAAAAAATTAA
1 AATTAA-CTTTATTTT-ATAAATTAA
*
87992804 AATTCAC-TTATTTTAT
1 AATTAACTTTATTTTAT
87992820 GTCCATAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
23 1 0.03
24 6 0.17
25 1 0.03
26 12 0.34
27 8 0.23
28 7 0.20
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.47
Consensus pattern (24 bp):
AATTAACTTTATTTTATAAATTAA
Found at i:87996661 original size:43 final size:43
Alignment explanation
Indices: 87996613--87996753 Score: 153
Period size: 43 Copynumber: 3.3 Consensus size: 43
87996603 ATCTCGTACA
* *
87996613 ATGCCAACGCCCCAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAAACATGGTCTTACATGTAATCAAATATCG
* * *
87996656 ATGCC-ACTGTCCCAAACAAGGTCTTACATGAAATCATATA-CG
1 ATGCCAAC-GTCCCAAACATGGTCTTACATGTAATCAAATATCG
* * * *
87996698 ATGCCAATGTCCCAGACATGGTCTCACATGTAAATCACAA-ATCA
1 ATGCCAACGTCCCAAACATGGTCTTACATGT-AATCA-AATATCG
87996742 ATGCCAACGTCC
1 ATGCCAACGTCC
87996754 TAGATGTGGT
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
42 28 0.35
43 39 0.49
44 13 0.16
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACATGGTCTTACATGTAATCAAATATCG
Found at i:88001953 original size:27 final size:27
Alignment explanation
Indices: 88001910--88001998 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
88001900 GACCTCAGTT
*
88001910 TGTAAAATTATCGAAATACCCTTATAG
1 TGTAAAATTACCGAAATACCCTTATAG
* * **
88001937 TGTAAAATTACCAAAATACCCCTCGATTT
1 TGTAAAATTACCGAAATA-CCCT-TATAG
* *
88001966 TGTAAAATTACTGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTATAG
88001993 TGTAAA
1 TGTAAA
88001999 TTAATGAAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
27 23 0.47
28 8 0.16
29 18 0.37
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTATAG
Found at i:88002006 original size:26 final size:27
Alignment explanation
Indices: 88001970--88002025 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
88001960 CGATTTTGTA
* *
88001970 AAATTACTG-AAATACC-CTTGTAGTGT
1 AAATTAATGAAAATACCTC-TGTAGGGT
88001996 AAATTAATGAAAATACCTCTGTAGGGT
1 AAATTAATGAAAATACCTCTGTAGGGT
88002023 AAA
1 AAA
88002026 ATGACTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.31
27 17 0.65
28 1 0.04
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.30
Consensus pattern (27 bp):
AAATTAATGAAAATACCTCTGTAGGGT
Found at i:88006924 original size:42 final size:43
Alignment explanation
Indices: 88006846--88006986 Score: 144
Period size: 42 Copynumber: 3.3 Consensus size: 43
88006836 TCATAGACAT
* * *
88006846 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAG
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAACAG
* * *
88006889 GGTCTTACACGAAATCATATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAACAG
* ** *
88006931 GGTCTTACACGTAAATCACAA-ATCAATGCCAACATCCCAGAC-G
1 GGTCTTACACG-AAATCA-AATATCGATGCCAATGTCCCAAACAG
88006974 TGGTCTTACACGA
1 -GGTCTTACACGA
88006987 TAACACATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
42 29 0.35
43 26 0.31
44 28 0.34
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAACAG
Found at i:88033616 original size:46 final size:48
Alignment explanation
Indices: 88033437--88033747 Score: 204
Period size: 46 Copynumber: 6.6 Consensus size: 48
88033427 TTTTTGTGCT
* * **
88033437 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACAAGATGAGAGCC
* ** * *
88033483 AGTGTAAGACCATGTTTGGGACATGGCATCAGC-ATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTA-CAAGATGAGAGCC
* ** *
88033531 AGTGTAAGA-CATGTATGGGACAT-GCATTGGCCT-CGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTACAAGATG-AGAGCC
* * *
88033577 AGTGTAAGA-CATGTTTGGGACAT-GCATCAGCTACAAGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACAAGATGAGAGCC
* * * *
88033621 AATGTAAAACCATGTCTGGGACATGGCATCGGC-ACGGATATG-TGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTAC--A-A-GATGAGAGCC
* * **
88033671 AGTGTAAGACCATGTCTAGGACATGGCATC-GGT-TTA-ATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACAAGAT-GA-GAGCC
*
88033718 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
88033748 GACATTATAC
Statistics
Matches: 211, Mismatches: 34, Indels: 39
0.74 0.12 0.14
Matches are distributed among these distances:
44 9 0.04
45 18 0.09
46 64 0.30
47 61 0.29
48 26 0.12
49 2 0.01
50 31 0.15
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACAAGATGAGAGCC
Found at i:88034866 original size:20 final size:21
Alignment explanation
Indices: 88034827--88034866 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
88034817 GTTATAATGA
88034827 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCGTGTTGCCCTT
*
88034848 CCACACGGGCGTG-TGCCCT
1 CCACACAGGCGTGTTGCCCT
88034867 ATTACAAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACAGGCGTGTTGCCCTT
Found at i:88038141 original size:48 final size:47
Alignment explanation
Indices: 88038068--88038536 Score: 382
Period size: 48 Copynumber: 9.7 Consensus size: 47
88038058 TACGTAAGCC
*
88038068 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCT
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGCATTGATATGAGAGCT
* * * * * ** * *
88038116 ATTGTAAAACCATGTCTAGGACATGGCATCGACCTCAATATGTGAGCC
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCATTGATATGAGAGCT
* ** * *
88038164 AGCGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAAAGCT
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGCATTGATATGAGAGCT
* * * * * * * *
88038212 AGTGTAAGACCATGTCTGGGACTTGGCGTTGGCCTCGATATGTGACCT
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCATTGATATGAGAGCT
*
88038260 GGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGATATGAGAGCT
1 AGTGTAAGACCATGTTTGGA-CATGGCATCGGCATTGATATGAGAGCT
* * * ** * *
88038308 AGTGTAAGACCATGTCTGGGACATCGCATTGGCCCCT-ATATGTGAGCC
1 AGTGTAAGACCATGT-TTGGACATGGCATCGG-CATTGATATGAGAGCT
* * *
88038356 AGTGTAAGACCATGTTTGGAACATGGCATTGGTATTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGCATTGATATGAGAGCT
* * * * *
88038404 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTTAATATGTGAGCT
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCATTGATATGAGAGCT
* * * * *
88038452 AATGTAAGACCATATTTGGAACATGGCATCGGCACTGATATATGAGAACC
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGCATTG--ATATGAGAGCT
* * * *
88038502 AGTGTAAAACTATGTCTGGGACATGGCATTGGCAT
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCAT
88038537 CTTTCTCTTT
Statistics
Matches: 328, Mismatches: 80, Indels: 24
0.76 0.19 0.06
Matches are distributed among these distances:
47 14 0.04
48 264 0.80
49 15 0.05
50 32 0.10
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGACATGGCATCGGCATTGATATGAGAGCT
Found at i:88038228 original size:96 final size:96
Alignment explanation
Indices: 88038064--88038530 Score: 603
Period size: 96 Copynumber: 4.8 Consensus size: 96
88038054 GGGTTACGTA
* * * *
88038064 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTATTGTAAAACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCAT
* *
88038129 GTCTAGGACATGGCATCGACCTCAATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* ** *
88038160 AGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAAAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCAT
* * * *
88038225 GTCTGGGACTTGGCGTTGGCCTCGATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* * *
88038256 A-CCTGGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCA
1 AGCC-AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCA
* * * *
88038320 TGTCTGGGACATCGCATTGGCCCCTATATGTG
65 TGTCTGGGACATGGCATCGGCCTCAATATGTG
* *
88038352 AGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGTATTTATATGAGAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCAT
* *
88038417 GTCTGGGACATGGCGTCGGCCTTAATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* * * * * * * *
88038448 AGCTAATGTAAGACCATATTTGGAACATGGCATCGGCACTGATATATGAGAACCAGTGTAAAACT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA-T-TTATATGAGAGCTAGTGTAAGACC
88038513 ATGTCTGGGACATGGCAT
64 ATGTCTGGGACATGGCAT
88038531 TGGCATCTTT
Statistics
Matches: 321, Mismatches: 46, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
95 2 0.01
96 280 0.87
97 3 0.01
98 36 0.11
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCCTCAATATGTG
Found at i:88038396 original size:192 final size:192
Alignment explanation
Indices: 88038068--88038534 Score: 664
Period size: 192 Copynumber: 2.4 Consensus size: 192
88038058 TACGTAAGCC
* *
88038068 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTATTGTAAAACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAAACCATGTCT
* * * *
88038133 AGGACATGGCATCGACCTCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
66 GGGACATGGCATTGGCCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
* * *
88038198 TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACTTGGCGTTGGCCTCGATATGTGACCT
131 TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATATGTGACCT
* * *
88038260 GGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAAACCATGTCT
* * * ****
88038325 GGGACATCGCATTGGCCCCTATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGTA
66 GGGACATGGCATTGGCCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
* * *
88038390 TTTATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTTAATATGTGAGCT
131 TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATATGTGACCT
* * * * * *
88038452 AATGTAAGACCATATTTGGAACATGGCATCGGCACTGATATATGAGAACCAGTGTAAAACTATGT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--ATATGAGAGCTAGTGTAAAACCATGT
88038517 CTGGGACATGGCATTGGC
64 CTGGGACATGGCATTGGC
88038535 ATCTTTCTCT
Statistics
Matches: 241, Mismatches: 32, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
192 202 0.84
194 39 0.16
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (192 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAAACCATGTCT
GGGACATGGCATTGGCCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATATGTGACCT
Found at i:88048786 original size:20 final size:20
Alignment explanation
Indices: 88048761--88048805 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
88048751 AGGGACTAAA
* *
88048761 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
88048781 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
88048801 ATGAA
1 ATGAA
88048806 TACATATGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:88049320 original size:6 final size:6
Alignment explanation
Indices: 88049309--88049334 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
88049299 TCCCCACATT
88049309 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
88049335 GAGGCCTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:88061753 original size:22 final size:22
Alignment explanation
Indices: 88061725--88061766 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
88061715 GTCCACATTT
88061725 TACATTTATTC-ACACTTTACCA
1 TACATTT-TTCAACACTTTACCA
88061747 TACATTTTTCAACACTTTAC
1 TACATTTTTCAACACTTTAC
88061767 AAATAAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (22 bp):
TACATTTTTCAACACTTTACCA
Found at i:88069511 original size:16 final size:16
Alignment explanation
Indices: 88069490--88069522 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
88069480 CCTATCTTAT
88069490 CACAACTGCATTTAAA
1 CACAACTGCATTTAAA
88069506 CACAACTGCATTTAAA
1 CACAACTGCATTTAAA
88069522 C
1 C
88069523 TCAAACATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.27, G:0.06, T:0.24
Consensus pattern (16 bp):
CACAACTGCATTTAAA
Found at i:88069864 original size:45 final size:45
Alignment explanation
Indices: 88069813--88069902 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
88069803 GATACTCGGA
88069813 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
1 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
88069858 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
1 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
88069903 GTAGAAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (45 bp):
AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
Found at i:88069901 original size:16 final size:15
Alignment explanation
Indices: 88069837--88069902 Score: 50
Period size: 16 Copynumber: 4.3 Consensus size: 15
88069827 AGCAATATTA
88069837 AAATTAAGAAATTGCC
1 AAATTAAGAAATT-CC
88069853 AAATT-AG-AA-TCC
1 AAATTAAGAAATTCC
*
88069865 ATAATTAAGCAATATT-A
1 A-AATTAAG-AA-ATTCC
88069882 AAATTAAGAAATTGCC
1 AAATTAAGAAATT-CC
88069898 AAATT
1 AAATT
88069903 GTAGAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
12 3 0.08
13 5 0.12
14 7 0.17
15 4 0.10
16 18 0.45
17 2 0.05
18 1 0.03
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.29
Consensus pattern (15 bp):
AAATTAAGAAATTCC
Found at i:88075803 original size:20 final size:20
Alignment explanation
Indices: 88075778--88075819 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
88075768 AATATAGATG
88075778 TTCATTTTTTATGATATGTA
1 TTCATTTTTTATGATATGTA
88075798 TTCATTTTTTATGATATGTA
1 TTCATTTTTTATGATATGTA
88075818 TT
1 TT
88075820 TTTTAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.05, G:0.10, T:0.62
Consensus pattern (20 bp):
TTCATTTTTTATGATATGTA
Found at i:88075822 original size:16 final size:18
Alignment explanation
Indices: 88075775--88075824 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 18
88075765 AGTAATATAG
88075775 ATGTTCATTTTTTATGAT
1 ATGTTCATTTTTTATGAT
88075793 ATGTATTCATTTTTTATGAT
1 ATG--TTCATTTTTTATGAT
88075813 ATG-T-ATTTTTTA
1 ATGTTCATTTTTTA
88075825 AATTTTGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 8 0.27
17 1 0.03
18 3 0.10
20 18 0.60
ACGTcount: A:0.24, C:0.04, G:0.10, T:0.62
Consensus pattern (18 bp):
ATGTTCATTTTTTATGAT
Found at i:88076604 original size:16 final size:16
Alignment explanation
Indices: 88076583--88076613 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
88076573 ACGATGAATA
88076583 GGGGACCGACCCTTCG
1 GGGGACCGACCCTTCG
88076599 GGGGACCGACCCTTC
1 GGGGACCGACCCTTC
88076614 AAGAATACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.39, G:0.35, T:0.13
Consensus pattern (16 bp):
GGGGACCGACCCTTCG
Found at i:88091886 original size:27 final size:26
Alignment explanation
Indices: 88091855--88092005 Score: 142
Period size: 27 Copynumber: 5.6 Consensus size: 26
88091845 TAAATTGTAC
88091855 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
88091882 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
88091908 ATGCACTAAGTGTGCGAATTGACCATGCC
1 A-GCACTAAGTGTGCG-ATTGACTATG-T
* *
88091937 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
88091964 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
88091991 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88092006 GACTCGATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
27 81 0.78
28 23 0.22
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:88091952 original size:55 final size:54
Alignment explanation
Indices: 88091855--88091984 Score: 156
Period size: 55 Copynumber: 2.4 Consensus size: 54
88091845 TAAATTGTAC
* **
88091855 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATT-GACCATGCGGCACTAAGTGTGCGAAATGAATATGT
** *
88091908 ATGCACTAAGTGTGCGAATTGACCATGCCGGCACTAAGTGTGCGATTTGATTATGT
1 A-GCACTAAGTGTGCGAATTGACCATG-CGGCACTAAGTGTGCGAAATGAATATGT
*
88091964 AGCACTAAGTGTGCGAGTTGA
1 AGCACTAAGTGTGCGAATTGA
88091985 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
53 1 0.02
54 20 0.30
55 44 0.67
56 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGAATATGT
Found at i:88100038 original size:27 final size:26
Alignment explanation
Indices: 88100007--88100184 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
88099997 TAAATTGTAC
88100007 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
88100034 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
88100060 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
88100088 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
88100116 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
88100143 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
88100170 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88100185 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:88100123 original size:82 final size:81
Alignment explanation
Indices: 88100008--88100163 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
88099998 AAATTGTACA
*
88100008 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
88100072 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
88100089 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
88100154 TGCGAGTTGA
65 TGCGAATTGA
88100164 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:88100175 original size:82 final size:81
Alignment explanation
Indices: 88100004--88100184 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
88099994 GATTAAATTG
*
88100004 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
88100069 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
88100085 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
88100149 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
88100167 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
88100185 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:88110055 original size:16 final size:16
Alignment explanation
Indices: 88110031--88110061 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
88110021 TTTCTTCACT
88110031 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
88110047 TACTTACTTACTTAA
1 TACTCACTTACTTAA
88110062 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:88110067 original size:20 final size:20
Alignment explanation
Indices: 88110028--88110067 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
88110018 AAATTTCTTC
* *
88110028 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
88110048 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
88110068 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:88110367 original size:53 final size:55
Alignment explanation
Indices: 88110299--88110505 Score: 190
Period size: 55 Copynumber: 3.8 Consensus size: 55
88110289 ATCCGTTTGA
* * *
88110299 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTGGCCTTA-TG-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTGGCCTTACAGT
* * * * * *
88110352 AACTCACCAGTGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTACAGT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TGGCCTTACAGT
* ** *
88110407 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTT--AGA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTGGCCTTACAGT
* * * * *
88110460 AACCTTACCAATTTCCATGCCATGGCATGGTCTTACATCGTATCCT
1 AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCT
88110506 TAAAGCCTAA
Statistics
Matches: 126, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 45 0.36
54 8 0.06
55 69 0.55
56 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (55 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTGGCCTTACAGT
Found at i:88110443 original size:108 final size:110
Alignment explanation
Indices: 88110299--88110497 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 110
88110289 ATCCGTTTGA
* *
88110299 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTGGCCTTATG-AA-CTCACC-A
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTGACCTTA-GAAACCTCACCAA
*
88110361 GTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTACAGT
65 GTGCCATGCCATGGCATGGTCTTACATGGGACCTTTGCCTTACAGT
* * * * *
88110407 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTGACCTTAGAAACCTCACCAAG
*
88110472 TTCCATGCCATGGCATGGTCTTACAT
66 TGCCATGCCATGGCATGGTCTTACAT
88110498 CGTATCCTTA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.61
109 5 0.06
110 25 0.32
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTGACCTTAGAAACCTCACCAAG
TGCCATGCCATGGCATGGTCTTACATGGGACCTTTGCCTTACAGT
Found at i:88127084 original size:93 final size:93
Alignment explanation
Indices: 88126918--88127364 Score: 576
Period size: 93 Copynumber: 4.8 Consensus size: 93
88126908 GTAAGGTGCT
* * * * * * * *
88126918 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTTAAGTTGATACTATGTCCCAAACA
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACA
*
88126983 TGGTCTTACACTGACTATAATCTCGTAGCC
64 TGGTCTTACACTGACTATCATCTCGTAGCC
88127013 GATGCATGTCCCAGACATGTGC-TACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGT-CTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACAT
* * * *
88127077 GGCCTTACACTGACTATCATTTTGTAGCT
65 GGTCTTACACTGACTATCATCTCGTAGCC
* * * *
88127106 GATGCATATCCTAGACATGTCTTATACTGGCTTACGTCTCAAGTCAATGCCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACATG
* * *
88127171 GTTTTACACTGAGTATCATCTCATAGCC
66 GTCTTACACTGACTATCATCTCGTAGCC
* * *
88127199 GATGCATGGCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCTAGACATA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACATG
*
88127264 GTCTTACACTGACTATCATTTCGTAGCC
66 GTCTTACACTGACTATCATCTCGTAGCC
** * * *
88127292 GATGCATGTCTTATACATGTCTTACACTGGCTTACATCTCGAGGTCGATG-CATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC-AAGTCGATGCCATGTCCCAGACAT
88127356 -GTCTTACAC
65 GGTCTTACAC
88127365 AAGCACTCGT
Statistics
Matches: 307, Mismatches: 42, Indels: 9
0.86 0.12 0.03
Matches are distributed among these distances:
92 10 0.03
93 271 0.88
94 22 0.07
95 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACATG
GTCTTACACTGACTATCATCTCGTAGCC
Found at i:88127301 original size:140 final size:140
Alignment explanation
Indices: 88126918--88127459 Score: 461
Period size: 140 Copynumber: 3.9 Consensus size: 140
88126908 GTAAGGTGCT
* * * * * * * *
88126918 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTTAAGT-TGATACTATGTCCCAAAC
1 GATGCCATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCAAGTCTGATGCCATGTCCTAGAC
*
88126982 ATGGTCTTACACTGACTATAATCTCGTAGCCGATGCATGTCCCAGACATGTGC-TACACTGGCTT
65 ATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGT-CTTACACTGGCTT
*
88127046 ACGTCTCAAGTC
129 ACATCTCAAGTC
* * * * ** *
88127058 GATGCCATGTCCCAGACATGGCCTTACACTGAC-TATCATTTTGTAG-CTGATG-CATATCCTAG
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTTA-C-GTCTCAAGTCTGATGCCATGTCCTAG
* * * * * * *
88127120 ACAT-GTCTTATACTGGCT-TACGTCTC-AAGTCAATGCCATGTCCCAGACATGGTTTTACACTG
63 ACATGGTCTTACACTGACTAT-CATCTCGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTG
*
88127182 AG--TATCATCTCATAGCC
125 -GCTTA-CATCTCA-AGTC
*
88127199 GATG-CATGGCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTC-GATGCCATGTCCTAGACA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCTGATGCCATGTCCTAGACA
* * ** *
88127262 TAGTCTTACACTGACTATCATTTCGTAGCCGATGCATGTCTTATACATGTCTTACACTGGCTTAC
66 TGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
*
88127327 ATCTCGAGGTC
131 ATCTC-AAGTC
** * *
88127338 GATG-CATGTCCCAGACATGTCTTACACAAGCACT-CGTCTCAA-TGCTGATGCCATGTCCGAGA
1 GATGCCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCAAGT-CTGATGCCATGTCCTAGA
* * * *
88127400 CATGGTCTTACACT-AGCTCTCATAAT-GTGGCCGATGCATGTCCCAAACATGTCTTACACT
64 CATGGTCTTACACTGA-CTATCAT-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
88127460 AGCTCACGCA
Statistics
Matches: 321, Mismatches: 56, Indels: 50
0.75 0.13 0.12
Matches are distributed among these distances:
138 17 0.05
139 115 0.36
140 165 0.51
141 24 0.07
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (140 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCTGATGCCATGTCCTAGACA
TGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
ATCTCAAGTC
Found at i:88127403 original size:186 final size:186
Alignment explanation
Indices: 88126938--88127413 Score: 586
Period size: 186 Copynumber: 2.6 Consensus size: 186
88126928 CCCAGACACG
* * ** * * * * *
88126938 GTCTTACACTGGCTCACATCTTAAGTTGATACTATGTCCCAAACATGGTCTTACACTGA-CTATA
1 GTCTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGC-ATC
*
88127002 ATCTCGTAGCCGATGCATGTCCCAGACATGTGC-TACACTGGCTTACGTCTCAAGTCGATGCCAT
65 ATCTCATAGCCGATGCATGTCCCAGACATGT-CTTACACTGGCTTACGTCTCAAGTCGATGCCAT
* * *
88127066 GTCCCAGACATGGCCTTACACTGACTATCATTTTGTAGCTGATGCATATCCTAGACAT
129 GTCCCAGACATAGCCTTACACTGACTATCATTTCGTAGCCGATGCATATCCTAGACAT
* * * * *
88127124 GTCTTATACTGGCTTACGTCTCAAGTCAATGCCATGTCCCAGACATGGTTTTACACTGAGTATCA
1 GTCTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCATCA
*
88127189 TCTCATAGCCGATGCATGGCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGT
66 TCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGT
* * * * *
88127254 CCTAGACATAGTCTTACACTGACTATCATTTCGTAGCCGATGCATGTCTTATACAT
131 CCCAGACATAGCCTTACACTGACTATCATTTCGTAGCCGATGCATATCCTAGACAT
* *
88127310 GTCTTACACTGGCTTACATCTCGAGGTCGATG-CATGTCCCAGACAT-GTCTTACAC-AAGCACT
1 GTCTTACACTGGCTTACATCTC-AAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCA-T
* * *
88127372 CGTCTCA-ATGCTGATGCCATGTCCGAGACATGGTCTTACACT
64 CATCTCATA-GCCGATG-CATGTCCCAGACAT-GTCTTACACT
88127414 AGCTCTCATA
Statistics
Matches: 250, Mismatches: 33, Indels: 13
0.84 0.11 0.04
Matches are distributed among these distances:
184 4 0.02
185 22 0.09
186 207 0.83
187 17 0.07
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (186 bp):
GTCTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCATCA
TCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGT
CCCAGACATAGCCTTACACTGACTATCATTTCGTAGCCGATGCATATCCTAGACAT
Found at i:88127461 original size:46 final size:46
Alignment explanation
Indices: 88127196--88127464 Score: 150
Period size: 46 Copynumber: 5.8 Consensus size: 46
88127186 TCATCTCATA
* *
88127196 GCCGATGCATGGCCCAGACATGTCTTACACTGGCTTACGTC-TCAA-GT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-T-C-TCAT-AATGTG
* * * *
88127243 --CGATGCCATGTCCTAGACATAGTCTTACACT-GACTATCAT-TTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATAAT-GTG
** * * * *
88127289 GCCGATGCATGTCTTATACATGTCTTACACTGGCT-TACAT-CTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GTG
* *
88127335 GTCGATGCATGTCCCAGACATGTCTTACACAAGCACTCGTC-TCAA--T-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG--CTC-TCAT-AATGTG
* *
88127381 GCTGATGCCATGTCCGAGACATGGTCTTACACTAGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTG
*
88127429 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
88127465 ACGCAAGTAA
Statistics
Matches: 175, Mismatches: 24, Indels: 47
0.71 0.10 0.19
Matches are distributed among these distances:
44 2 0.01
45 13 0.07
46 83 0.47
47 50 0.29
48 25 0.14
49 1 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTG
Found at i:88134557 original size:47 final size:47
Alignment explanation
Indices: 88134491--88134614 Score: 151
Period size: 47 Copynumber: 2.6 Consensus size: 47
88134481 TTACATAATG
* * * *
88134491 ATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCTCACTA
1 ATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCACACTA
* * * *
88134538 ATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACTG
1 ATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACACTA
*
88134585 ATGCCATATCCCAGATATGGTCTTATACAG
1 ATGCCATATCCCAGATATGGTCTTACACAG
88134615 AAATCACTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
47 65 0.97
48 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (47 bp):
ATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACACTA
Found at i:88134673 original size:31 final size:31
Alignment explanation
Indices: 88134638--88134815 Score: 257
Period size: 31 Copynumber: 5.7 Consensus size: 31
88134628 CTTGTCACTT
* *
88134638 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** * *
88134669 GTAGCTGGTGCTACCATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
88134700 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
88134731 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
88134762 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
88134793 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
88134816 GTTGTCATTT
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 132 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:88134889 original size:50 final size:51
Alignment explanation
Indices: 88134793--88134917 Score: 191
Period size: 50 Copynumber: 2.5 Consensus size: 51
88134783 CACTGATCAG
* * * *
88134793 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
88134844 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTG-CCATTGATCAGATAAGT
88134894 GTAGCCGAAGCTATCACTTATCAC
1 GTAGCCGAAGCTATCACTTATCAC
88134918 ATGGTCCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
50 45 0.65
51 24 0.35
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
Found at i:88135971 original size:17 final size:18
Alignment explanation
Indices: 88135937--88135973 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
88135927 CAATTAACCC
*
88135937 CTCAATTAAGATAATTTT
1 CTCAATTAACATAATTTT
88135955 CTCAATTAACA-AATTTT
1 CTCAATTAACATAATTTT
88135972 CT
1 CT
88135974 AGACATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (18 bp):
CTCAATTAACATAATTTT
Found at i:88138171 original size:47 final size:46
Alignment explanation
Indices: 88138099--88138408 Score: 210
Period size: 47 Copynumber: 6.7 Consensus size: 46
88138089 GTAAGGTACC
* *
88138099 GATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATCTTAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-ACATCTCAAGTT
* * * **
88138146 GATGCCATGTCCCAAACATGCTCTTACAGT-GACTATCATCTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTA-CATCTCA-AGTT
**
88138194 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTTATGTCTCAA-TT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TACATCTCAAGTT
* * **
88138238 CGATTCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTAGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAG-CTA-CATCTC-AAGTT
* * * *
88138287 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TACATCTC-AAGTT
* **
88138333 GATG-CATGTCCCAGACAT-GTCTTATACTAGC-AC-TCGTCTTAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTACATC-TC--AA-GTT
* *
88138379 GATGCCATGTCCCGGACATGGGCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
88138409 GGCTCTCATA
Statistics
Matches: 211, Mismatches: 33, Indels: 37
0.75 0.12 0.13
Matches are distributed among these distances:
43 2 0.01
44 4 0.02
45 5 0.02
46 87 0.41
47 95 0.45
48 18 0.09
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTACATCTCAAGTT
Found at i:88138248 original size:46 final size:45
Alignment explanation
Indices: 88138098--88138363 Score: 207
Period size: 46 Copynumber: 5.7 Consensus size: 45
88138088 GGTAAGGTAC
* * * *
88138098 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATCTTAAGT
1 CGAT-CCATGTCCCAGACA-TGTCTTACACTAGCTTATATCTCAAGT
* * * *
88138145 TGATGCCATGTCCCAAACATGCTCTTACAGT-GAC-TATCATCTCATAGC
1 CGAT-CCATGTCCCAGACATG-TCTTACACTAG-CTTAT-ATCTCA-AGT
* * *
88138193 CGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCAATT
1 CGATCCATGTCCCAGACATGTCTTACACTAGCTTATATCTCAAGT
* *
88138238 CGATTCCATGTCCCAGACATGGTCTTACACT-GAC-TATCATCTCGTAGC
1 CGA-TCCATGTCCCAGACAT-GTCTTACACTAG-CTTAT-ATCTC-AAGT
* * ** *
88138286 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGT
1 CGATCCATGTCCCAGACATGTCTTACACTAGCTTATATCTC-AAGT
* *
88138332 CGATGCATGTCCCAGACATGTCTTATACTAGC
1 CGATCCATGTCCCAGACATGTCTTACACTAGC
88138364 ACTCGTCTTA
Statistics
Matches: 178, Mismatches: 28, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
45 4 0.02
46 83 0.47
47 82 0.46
48 9 0.05
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
CGATCCATGTCCCAGACATGTCTTACACTAGCTTATATCTCAAGT
Found at i:88138264 original size:93 final size:93
Alignment explanation
Indices: 88138097--88138356 Score: 337
Period size: 93 Copynumber: 2.8 Consensus size: 93
88138087 GGGTAAGGTA
* * * * * *
88138097 CCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATCTTAAGTT-GATGCCATGTCCCAA
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTTACGTCTCAA-TTCGATTCCATGTCCCAG
* *
88138161 ACATGCTCTTACAGTGACTATCATCTCATAG
63 ACATGGTCTTACACTGACTATCATCTCATAG
*
88138192 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCAATTCGATTCCATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAATTCGATTCCATGTCCCAGACA
*
88138257 TGGTCTTACACTGACTATCATCTCGTAG
66 TGGTCTTACACTGACTATCATCTCATAG
* ** *
88138285 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGA-TGCATGTCCCAGAC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTC-AATTCGATTCCATGTCCCAGAC
88138349 AT-GTCTTA
65 ATGGTCTTA
88138357 TACTAGCACT
Statistics
Matches: 148, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
92 8 0.05
93 116 0.78
94 18 0.12
95 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (93 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAATTCGATTCCATGTCCCAGACA
TGGTCTTACACTGACTATCATCTCATAG
Found at i:88138371 original size:46 final size:46
Alignment explanation
Indices: 88138191--88138456 Score: 199
Period size: 46 Copynumber: 5.7 Consensus size: 46
88138181 TCATCTCATA
*
88138191 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA-T-GTCTC-AA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACTCGTCTCGAG
** * *
88138236 TTCGATTCCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCGTA-
1 GCCGA-TGCATGTCCCAGACAT-GTCTTACACTAGCAC--TCGTCTCG-AG
* *
88138284 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCGAG
* * ** *
88138330 GTCGATGCATGTCCCAGACATGTCTTATACTAGCACTCGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAG
* * * * * * *
88138376 GCCGATGCCATGTCCCGGACATGGGCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGT-CTCGAG
88138424 GCCGATGCATGTCCCAGA-ATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
88138457 TCACGCAAGT
Statistics
Matches: 175, Mismatches: 30, Indels: 32
0.74 0.13 0.14
Matches are distributed among these distances:
43 1 0.01
45 16 0.09
46 78 0.45
47 54 0.31
48 24 0.14
49 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAG
Found at i:88138387 original size:140 final size:137
Alignment explanation
Indices: 88138097--88138453 Score: 377
Period size: 140 Copynumber: 2.6 Consensus size: 137
88138087 GGGTAAGGTA
* **
88138097 CCGATGCCATGTCCCAGACACGGTCTTACACT-AGCTCA-CATCT-TAAGTTGATGCCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CT-ATCATCTGT-AGCCGATG-CATGTCCC
* *
88138159 AAACATGCTCTTACAGTGACTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAG
62 AGACATG-TCTTACACTGACTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAG
88138224 CTTATGTCTCAAT
126 C-TATGTCTCAAT
* *
88138237 TCGATTCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCT-GTAGCCGATGCATGTCCCAGA
* * * * *
88138302 CATGTCTTACACTGGCT-TACGTCTCGA-GGTCGATGCATGTCCCAGACATGTCTTATACTAGC-
65 CATGTCTTACACTGACTAT-CATCTC-ATAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
*
88138364 ACTCGTCTTAAT
128 A-T-GTCTCAAT
* * * * * *
88138376 GCCGATGCCATGTCCCGGACATGGGCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-CTGTAGCCGATGCATGTCCCAG
88138441 A-ATGTCTTACACT
64 ACATGTCTTACACT
88138454 AGCTCACGCA
Statistics
Matches: 186, Mismatches: 21, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
137 1 0.01
138 2 0.01
139 68 0.37
140 106 0.57
141 8 0.04
142 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (137 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTGTAGCCGATGCATGTCCCAGAC
ATGTCTTACACTGACTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTATG
TCTCAAT
Found at i:88138388 original size:93 final size:88
Alignment explanation
Indices: 88138097--88138456 Score: 278
Period size: 93 Copynumber: 3.9 Consensus size: 88
88138087 GGGTAAGGTA
* * * * *
88138097 CCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATCTTAAGTTGATGCCATGTCCCAAA
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTTACATCTGAAGTCGATG-CATGTCCCAGA
*
88138162 CATGCTCTTACAGT-GACTATCATCTCATAG
63 CATG-TCTTACACTAG-C-A-C-TCTCATAG
** * * *
88138192 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCAATTCGATTCCATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTGAAGTCGA-TGCATGTCCCAGACA
*
88138257 TGGTCTTACACT-GACTATCATCTCGTAG
65 T-GTCTTACACTAG-C-A-C-TCTCATAG
* * *
88138285 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCT-GAAGTCGATGCATGTCCCAGACA
* *
88138350 TGTCTTATACTAGCACTCGTCTTAATG
65 TGTCTTACACTAGCACTC-TCAT-A-G
* * * * ** *
88138377 CCGATGCCATGTCCCGGACATGGGCTTACACTGGCTCT-CATAATGTGGCCGATGCATGTCCCAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTGAAGTCGATGCATGTCCCAG
88138441 A-ATGTCTTACACTAGC
62 ACATGTCTTACACTAGC
88138457 TCACGCAAGT
Statistics
Matches: 228, Mismatches: 26, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
89 2 0.01
90 4 0.02
91 2 0.01
92 17 0.07
93 141 0.62
94 54 0.24
95 8 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (88 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTGAAGTCGATGCATGTCCCAGACAT
GTCTTACACTAGCACTCTCATAG
Found at i:88138435 original size:47 final size:46
Alignment explanation
Indices: 88138146--88138453 Score: 195
Period size: 46 Copynumber: 6.6 Consensus size: 46
88138136 ATCTTAAGTT
* * * * * *
88138146 GATGCCATGTCCCAAACATGCTCTTACAGTGACTATCATCTCATAGCC
1 GATG-CATGTCCCAGACATG-TCTTACACTGACTCTCATATCGTGGCC
* ***
88138194 GATGCATGTCCCAGACATGTCTTACACT-AGCT-T-ATGTC-TCAATTC
1 GATGCATGTCCCAGACATGTCTTACACTGA-CTCTCATATCGT--GGCC
* * * *
88138239 GATTCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCC
1 GA-TGCATGTCCCAGACAT-GTCTTACACTGACTCTCATATCGTGGCC
* * * * *
88138287 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGACTCT-CATATCGTGGCC
* **
88138333 GATGCATGTCCCAGACATGTCTTATACTAGCACTCGTC-T-TAAT-GCC
1 GATGCATGTCCCAGACATGTCTTACACT-G-ACTC-TCATATCGTGGCC
* * *
88138379 GATGCCATGTCCCGGACATGGGCTTACACTGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTCTCAT-ATCGTGGCC
88138427 GATGCATGTCCCAGA-ATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
88138454 AGCTCACGCA
Statistics
Matches: 212, Mismatches: 28, Indels: 43
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.00
44 4 0.02
45 18 0.08
46 85 0.40
47 68 0.32
48 29 0.14
49 5 0.02
50 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTCTCATATCGTGGCC
Found at i:88143396 original size:128 final size:128
Alignment explanation
Indices: 88143226--88143460 Score: 407
Period size: 128 Copynumber: 1.8 Consensus size: 128
88143216 ATGTTAGTTA
* *
88143226 TCTATAGTTGAATAAAATGAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAATCTA
1 TCTATAATTGAATAAAATGAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAACCTA
*
88143291 ATGAATTCTAACGAGTTGAGGTAGCGTGCAATAAATTACTTGCACACTAATGGATAAAATAAG
66 ATGAATTCTAACGAGTTGAGGTAGCGTGCAAAAAATTACTTGCACACTAATGGATAAAATAAG
* *
88143354 TCTATAATTGAATAAAATTAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAGCCTA
1 TCTATAATTGAATAAAATGAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAACCTA
* *
88143419 ATGAATTCTAACGAGTTGATGTAGTGTGCAAAAAATTACTTG
66 ATGAATTCTAACGAGTTGAGGTAGCGTGCAAAAAATTACTTG
88143461 AACCAAATAA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
128 100 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (128 bp):
TCTATAATTGAATAAAATGAGTCTTTTTATGATGTTTCTTGACCAATTAGGCCAATTCAAACCTA
ATGAATTCTAACGAGTTGAGGTAGCGTGCAAAAAATTACTTGCACACTAATGGATAAAATAAG
Found at i:88144929 original size:41 final size:41
Alignment explanation
Indices: 88144882--88144960 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
88144872 CATACGCCTG
88144882 TGTGCCTGGACCGTGTCTTTCACACAGCCATGACACGCTCA
1 TGTGCCTGGACCGTGTCTTTCACACAGCCATGACACGCTCA
* *
88144923 TGTGCCTGGCCCGTGTCTTTCACACGGCCATGACACGC
1 TGTGCCTGGACCGTGTCTTTCACACAGCCATGACACGC
88144961 CCGTGTCCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.16, C:0.35, G:0.24, T:0.24
Consensus pattern (41 bp):
TGTGCCTGGACCGTGTCTTTCACACAGCCATGACACGCTCA
Found at i:88145779 original size:26 final size:26
Alignment explanation
Indices: 88145743--88145793 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
88145733 TGGCATAAGT
88145743 AAAACTTACTCATCAATATTCATTAC
1 AAAACTTACTCATCAATATTCATTAC
88145769 AAAACTTACTCATCAATATTCATTA
1 AAAACTTACTCATCAATATTCATTA
88145794 TACCTCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (26 bp):
AAAACTTACTCATCAATATTCATTAC
Found at i:88146102 original size:46 final size:45
Alignment explanation
Indices: 88146006--88146225 Score: 186
Period size: 46 Copynumber: 4.8 Consensus size: 45
88145996 GTATATCTGT
* *
88146006 GCCGATGCCATGTCCCAGACATGATCTTACACTTA-C-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACATG-TCTTACAC-TAGCTACGTCTC-AAG
88146052 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TACGTCTCAAG
* *
88146098 GCCGATGCATGTCCTAGACATGTCTTACACTAGC-ACTTGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTAC--GTCTCAAG
* * * * *
88146144 GCC-ATGCCATGTCCCAGGCATGGTCTT-CACTGGCT--TTCATGATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTACGTC-TCAAG
*
88146188 TGACTGATGCATGTCCCAGACATGTCTTACACTAGCTA
1 -G-CCGATGCATGTCCCAGACATGTCTTACACTAGCTA
88146226 ACACAAGTGA
Statistics
Matches: 145, Mismatches: 14, Indels: 29
0.77 0.07 0.15
Matches are distributed among these distances:
43 4 0.03
44 13 0.09
45 25 0.17
46 95 0.66
47 8 0.06
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTACGTCTCAAG
Found at i:88149614 original size:55 final size:53
Alignment explanation
Indices: 88149538--88149722 Score: 187
Period size: 55 Copynumber: 3.4 Consensus size: 53
88149528 ATTAGGGTTT
88149538 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTGAGATTTTTAAGGC
1 AAGG-TACCATGTAAGACCATGCCAAGGCATGAC-ATTGGTGAGATTTTTAAGGC
* * * *
88149593 AAGGTTATCATGTAAGACCATGTCAAGACATGACATTGAT-A-ATTTTCTATAAGGC
1 AAGG-TACCATGTAAGACCATGCCAAGGCATGACATTGGTGAGA-TTT-T-TAAGGC
* * * ** *
88149648 AAAGGTCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAG-TTCATAAGAC
1 -AAGGTACCATGTAAGACCATGCCAAGGCATGACATTGGTGAGATTTTTAAGGC
88149701 AAGGATACCATGTAAGACCATG
1 AAGG-TACCATGTAAGACCATG
88149723 TCGAGACATG
Statistics
Matches: 106, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
52 5 0.05
53 24 0.23
54 6 0.06
55 66 0.62
56 5 0.05
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (53 bp):
AAGGTACCATGTAAGACCATGCCAAGGCATGACATTGGTGAGATTTTTAAGGC
Found at i:88157299 original size:53 final size:54
Alignment explanation
Indices: 88157117--88157360 Score: 227
Period size: 55 Copynumber: 4.6 Consensus size: 54
88157107 ATTAGGGTTT
* *
88157117 AAGGATACCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCAT-GACATTGGT-AGGTTTCATAAGGC
* * * *
88157172 AAGGATACGATGTAAGACCATGTCAAGACATGACATTGATAGGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGACATTGGTAGGTTTC-ATAAGGC
* *
88157227 AAAGG-TCCCATGTAAGACCATACCAAGGCATGACATTGGT-GAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGACATTGGTAG-GTTTCATAAGGC
* * * * * *
88157280 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGGCATGACATTGGTAGGTTTCATAAGGC
* * *
88157329 AAGGATACCACGTAAGACCATGACAAGTCATG
1 AAGGATACCATGTAAGACCATGCCAAGGCATG
88157361 GCAATGATAA
Statistics
Matches: 158, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
49 28 0.18
52 6 0.04
53 43 0.27
54 14 0.09
55 63 0.40
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGACATTGGTAGGTTTCATAAGGC
Found at i:88157326 original size:108 final size:110
Alignment explanation
Indices: 88157124--88157326 Score: 286
Period size: 108 Copynumber: 1.9 Consensus size: 110
88157114 TTTAAGGATA
* *
88157124 CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACGATGTAAGA
1 CCATGTAAAACCATACCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
88157189 CCATGTCAAGACATGACATTGATAGGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
* * *
88157234 CCATGTAAGACCATACCAAGGCAT-GACATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAAACCATACCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * *
88157296 ACCATGTCGAGACATGGCAATGGTAAGTTTC
65 ACCATGTCAAGACATGACAATGATAAGTTTC
88157327 AAAAGGATAC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 9 0.11
110 22 0.27
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAAACCATACCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:88162676 original size:37 final size:37
Alignment explanation
Indices: 88162614--88162720 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
88162604 AGCTCAGATG
* * *
88162614 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
88162651 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
88162688 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
88162721 AAATATATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:88162926 original size:48 final size:49
Alignment explanation
Indices: 88162871--88163264 Score: 557
Period size: 48 Copynumber: 7.9 Consensus size: 49
88162861 ACACATCGCC
*
88162871 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
*
88162919 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* *
88162969 TATATATTTCGA-ATT-GACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTC-ACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
88163017 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
*
88163069 TATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTC--A-A
* * *
88163121 TATATATTTCGCATTAGCCATTCAGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
*
88163169 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACAAATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
*
88163219 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
88163265 TATACATCAA
Statistics
Matches: 318, Mismatches: 14, Indels: 26
0.89 0.04 0.07
Matches are distributed among these distances:
47 1 0.00
48 133 0.42
49 2 0.01
50 86 0.27
51 2 0.01
52 93 0.29
53 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:88162990 original size:98 final size:99
Alignment explanation
Indices: 88162874--88163264 Score: 571
Period size: 98 Copynumber: 3.9 Consensus size: 99
88162864 CATCGCCTAC
* *
88162874 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACACTAGC
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGC
88162937 CATTCGGCTTTACCACATATACATATCTCATATAT
65 CATTCGGCTTTACCACATATACATATCTCATATAT
*
88162972 ATATTTCGA-ATTGACCATTCGGCTTTACCACATATGCATATCTC-ATACATATTTCACATTAGC
1 ATATTTC-ACATTGACCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGC
88163035 CATTCGGCTTTACCACATATACATATCTCATATATAT
65 CATTCGGCTTTACCACATATACATATCTC--ATATAT
* *
88163072 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCGCATTA
1 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTC--A-ATACATATTTCACATTA
* *
88163137 GCCATTCAGCTTTACCACATATACATATCTC--ATAC
63 GCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
88163172 ATATTTCACATT-AGCCATTCGGCTTTACCACATATACAAATCTCATATATATATTTCACATTAG
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATTAG
88163236 CCATTCGGCTTTACCACATATACATATCT
64 CCATTCGGCTTTACCACATATACATATCT
88163265 TATACATCAA
Statistics
Matches: 272, Mismatches: 11, Indels: 20
0.90 0.04 0.07
Matches are distributed among these distances:
98 132 0.49
99 4 0.01
100 91 0.33
104 45 0.17
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (99 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCC
ATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:88167645 original size:47 final size:46
Alignment explanation
Indices: 88167578--88167752 Score: 185
Period size: 47 Copynumber: 3.7 Consensus size: 46
88167568 ATATCTATAC
*
88167578 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACGTCTCGAGGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTT-CATCTCGAGGT
* ** * * *
88167626 CGATG-CATGTCCTAGACATGTCCGACACTAGCACTCATCTCAATGT
1 CGATGCCATGTCCCAGACATGTCTTACACTAGC-TTCATCTCGAGGT
* * *
88167672 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-CTCGAGGT
88167720 CGATG-CATGTCCCAGACATGTCTTACACTAGCT
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCT
88167753 CACACAAGTG
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
46 37 0.35
47 41 0.39
48 26 0.25
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTTCATCTCGAGGT
Found at i:88167700 original size:94 final size:94
Alignment explanation
Indices: 88167578--88167751 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 94
88167568 ATATCTATAC
* * *
88167578 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACGT-CTCGAGGTCGATGCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GAGGTCGATGCATGTCCCAG
88167641 ACATGTCCGACACTAGCACTCATCTCAATGT
64 ACATGTCCGACACTAGCACTCATCTCAATGT
* *
88167672 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAGGTCGATGCATGTCCCAGAC
**
88167737 ATGTCTTACACTAGC
66 ATGTCCGACACTAGC
88167752 TCACACAAGT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
94 69 0.97
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAGGTCGATGCATGTCCCAGAC
ATGTCCGACACTAGCACTCATCTCAATGT
Found at i:88171904 original size:22 final size:22
Alignment explanation
Indices: 88171876--88171964 Score: 81
Period size: 22 Copynumber: 3.9 Consensus size: 22
88171866 GCACTAATGA
88171876 ACAGAGAGCACTAAAGTGCTAT
1 ACAGAGAGCACTAAAGTGCTAT
*
88171898 ACAGAGAGCAC-AAATGTGCTAA
1 ACAGAGAGCACTAAA-GTGCTAT
** *
88171920 ATGGAGAGCACTAATGTGCTAAT
1 ACAGAGAGCACTAAAGTGCT-AT
* *
88171943 AATCAGAGGGCACTAACGTGCT
1 -A-CAGAGAGCACTAAAGTGCT
88171965 TATAATCAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.06
22 31 0.58
23 3 0.06
24 1 0.02
25 15 0.28
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.19
Consensus pattern (22 bp):
ACAGAGAGCACTAAAGTGCTAT
Found at i:88173325 original size:15 final size:15
Alignment explanation
Indices: 88173301--88173345 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
88173291 TGCTTTTAAT
*
88173301 TATATTATATAATAA
1 TATATAATATAATAA
88173316 TATATAATATAAT-A
1 TATATAATATAATAA
*
88173330 TAGTATAATTTAATAA
1 TA-TATAATATAATAA
88173346 CATTTACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 3 0.12
15 22 0.85
16 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
TATATAATATAATAA
Found at i:88175594 original size:17 final size:17
Alignment explanation
Indices: 88175574--88175627 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
88175564 AAATGTTGAT
88175574 TTAAGTGAATTGAAATG
1 TTAAGTGAATTGAAATG
* * **
88175591 TTAATTGAAATGTTGAT-
1 TTAAGTGAATTG-AAATG
88175608 TTAAGTGAATTGAAATG
1 TTAAGTGAATTGAAATG
88175625 TTA
1 TTA
88175628 TTTGTTTGAA
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
16 2 0.07
17 23 0.85
18 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (17 bp):
TTAAGTGAATTGAAATG
Found at i:88175598 original size:12 final size:12
Alignment explanation
Indices: 88175560--88175627 Score: 54
Period size: 12 Copynumber: 6.0 Consensus size: 12
88175550 TGAGAATGAC
*
88175560 ATTGAAATGTTG
1 ATTGAAATGTTA
* *
88175572 ATT-TAA-GTGA
1 ATTGAAATGTTA
88175582 ATTGAAATGTTA
1 ATTGAAATGTTA
*
88175594 ATTGAAATGTTG
1 ATTGAAATGTTA
* *
88175606 ATT-TAA-GTGA
1 ATTGAAATGTTA
88175616 ATTGAAATGTTA
1 ATTGAAATGTTA
88175628 TTTGTTTGAA
Statistics
Matches: 41, Mismatches: 11, Indels: 8
0.68 0.18 0.13
Matches are distributed among these distances:
10 10 0.24
11 8 0.20
12 23 0.56
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (12 bp):
ATTGAAATGTTA
Found at i:88175600 original size:34 final size:34
Alignment explanation
Indices: 88175560--88175627 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
88175550 TGAGAATGAC
88175560 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
1 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
88175594 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
1 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
88175628 TTTGTTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (34 bp):
ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
Found at i:88178912 original size:39 final size:40
Alignment explanation
Indices: 88178708--88178930 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
88178698 TTGAATGCTG
* * * * * *
88178708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
88178748 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
88178788 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
88178828 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
88178868 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
88178907 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
88178931 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:88178950 original size:79 final size:80
Alignment explanation
Indices: 88178783--88178965 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
88178773 GTGCGAGATA
* * *
88178783 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
88178848 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
88178863 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
88178927 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
88178942 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
88178966 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:88180355 original size:25 final size:26
Alignment explanation
Indices: 88180291--88180363 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
88180281 AATTTTCTTG
* *
88180291 AAATTTTACAAGGGGTAAAATCGTCA
1 AAATTTTACTAGGGGTAAAATTGTCA
88180317 AAATTTTA-TCAGGGGTAAAATTGTCA
1 AAATTTTACT-AGGGGTAAAATTGTCA
88180343 AAA-TTTACTA-GGGTAAAATTG
1 AAATTTTACTAGGGGTAAAATTG
88180364 GGGTTGGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.26
25 5 0.12
26 27 0.63
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATTGTCA
Found at i:88182062 original size:43 final size:43
Alignment explanation
Indices: 88181925--88182096 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
88181915 CATAGGATTC
* * * *
88181925 CGATATGTGTTTTCGTGTAAGACCACATCTAGGACGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * * ***
88181968 TGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCATCAT
1 CGATATT-TGATTT-CGTGTAAGACCACGTCTGGGACGTTGGCAT
88182012 CG-TATTTGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATTTGATTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* *
88182054 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
88182097 TGTATGAGCC
Statistics
Matches: 101, Mismatches: 20, Indels: 16
0.74 0.15 0.12
Matches are distributed among these distances:
42 27 0.27
43 47 0.47
44 27 0.27
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:88187308 original size:70 final size:70
Alignment explanation
Indices: 88187231--88187371 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
88187221 AAATACAGTC
88187231 ATATAGAACATGAAATAAATAATTACTAATGAATTAAGAAAATTAATATTAAAATAGTAAAACAG
1 ATATAGAACATGAAATAAATAATTACTAATGAATTAAGAAAATTAATATTAAAATAGTAAAACAG
88187296 AGCTA
66 AGCTA
88187301 ATATAGAACATGAAATAAATAATTACTAATGAATTAAGAAAATTAATATTAAAATAGTAAAACAG
1 ATATAGAACATGAAATAAATAATTACTAATGAATTAAGAAAATTAATATTAAAATAGTAAAACAG
88187366 AGCTA
66 AGCTA
88187371 A
1 A
88187372 GGATGCAAGA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.57, C:0.06, G:0.10, T:0.27
Consensus pattern (70 bp):
ATATAGAACATGAAATAAATAATTACTAATGAATTAAGAAAATTAATATTAAAATAGTAAAACAG
AGCTA
Found at i:88187430 original size:23 final size:21
Alignment explanation
Indices: 88187395--88187443 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 21
88187385 AAAACTGAGA
88187395 GTGGTGGTCGGCGATGGGGTGC
1 GTGGTGGTCGGCGAT-GGGTGC
*
88187417 GGTGGTGCGT-GGCGGTGGGTGC
1 -GTGGTG-GTCGGCGATGGGTGC
88187439 GTGGT
1 GTGGT
88187444 AGTTGGACGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.21
22 6 0.25
23 11 0.46
24 2 0.08
ACGTcount: A:0.02, C:0.12, G:0.61, T:0.24
Consensus pattern (21 bp):
GTGGTGGTCGGCGATGGGTGC
Found at i:88201066 original size:43 final size:42
Alignment explanation
Indices: 88200968--88201079 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
88200958 CGTTGGCATC
* *
88200968 GATTACATGTAAGACCATGTCTGGGACATCGTCATTGTATTT
1 GATTACATGTAAGACCATGTCTGGGACATCGGCATCGTATTT
* * * * *
88201010 AATTTCGTGTAAGACCCTGTCTGGGATAGT-GGCATCGATATTT
1 GATTACATGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTT
* *
88201053 GATTACATGTAAGACCACGTCTAGGAC
1 GATTACATGTAAGACCATGTCTGGGAC
88201080 GTTGGCATTG
Statistics
Matches: 54, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
42 28 0.52
43 26 0.48
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATCGGCATCGTATTT
Found at i:88201086 original size:43 final size:42
Alignment explanation
Indices: 88200939--88201087 Score: 125
Period size: 43 Copynumber: 3.7 Consensus size: 42
88200929 TGTGATTTTC
88200939 TGTAAGACCACGTCTGGGACGTTGGCATC------GATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
* * * * * * * *
88200975 TGTAAGACCATGTCTGGGACATCGTCATTGTATTTAATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
*
88201017 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGATTACA
*
88201060 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
88201088 TGTACGAGCC
Statistics
Matches: 83, Mismatches: 19, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
36 24 0.29
42 27 0.33
43 31 0.37
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
Found at i:88201807 original size:15 final size:15
Alignment explanation
Indices: 88201787--88201823 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
88201777 TTGGTTGCAA
88201787 ATTTGGTATGAAATG
1 ATTTGGTATGAAATG
88201802 ATTTGGTATGAAATG
1 ATTTGGTATGAAATG
88201817 ATTTGGT
1 ATTTGGT
88201824 TTTGAACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (15 bp):
ATTTGGTATGAAATG
Found at i:88212713 original size:23 final size:23
Alignment explanation
Indices: 88212687--88212730 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
88212677 ATTCATTGGT
88212687 TCATTTACGCAT-TAATCACATAC
1 TCATTTACGCATAT-ATCACATAC
*
88212710 TCATTTAGGCATATATCACAT
1 TCATTTACGCATATATCACAT
88212731 TACACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (23 bp):
TCATTTACGCATATATCACATAC
Found at i:88216005 original size:40 final size:39
Alignment explanation
Indices: 88215949--88216183 Score: 303
Period size: 40 Copynumber: 5.9 Consensus size: 39
88215939 GTATGAGCAT
*
88215949 TTGTGCGAGTTTCTATATCCGGGCTAAGTCCCGAAGGCA
1 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
88215988 GTTGTGCGAGTTACTATATCCGGGGTAAGTCCCGAAGGCA
1 -TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* *
88216028 TTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCA
1 -TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* * *
88216068 TTTGTACGAGCTACTATATCCAGGCTAAGTCCCGAAGGCA
1 -TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
88216108 TTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA
1 TT-GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* * * *
88216148 TTGAGCAAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 TTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
88216184 TACTTGGCTT
Statistics
Matches: 173, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 143 0.83
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
Found at i:88223566 original size:15 final size:16
Alignment explanation
Indices: 88223546--88223585 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
88223536 AGTTGATTCA
88223546 TGATTTATATG-TATG
1 TGATTTATATGTTATG
88223561 TGATTTA-ATGTTATG
1 TGATTTATATGTTATG
*
88223576 T-ATATATATG
1 TGATTTATATG
88223586 GGCTAAGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (16 bp):
TGATTTATATGTTATG
Found at i:88224253 original size:40 final size:40
Alignment explanation
Indices: 88224036--88224252 Score: 268
Period size: 40 Copynumber: 5.6 Consensus size: 40
88224026 CGGATGATAA
* * *
88224036 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
88224076 -C-GGCTAAGT-CCAAAGGCA-TTGTGCGAGTTAC-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
88224111 CCGGGCTAAGTCCCG-AGGCATTTGTGGGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
88224150 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
88224190 CCGGGCTAAGTTCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
88224230 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
88224253 GAGCAAGTAG
Statistics
Matches: 151, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
34 1 0.01
35 2 0.01
36 11 0.07
37 21 0.14
38 21 0.14
39 19 0.13
40 76 0.50
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:88235533 original size:61 final size:61
Alignment explanation
Indices: 88235463--88235755 Score: 284
Period size: 61 Copynumber: 4.8 Consensus size: 61
88235453 CACCAAGAGA
* ** * * *
88235463 AGGAAAGCCTTTATGGCAAGTACTAAATGTAAAGGACATCCTTTGTGGGAAAAATCTGGAT
1 AGGAAAGCCTTTTTGGTGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAACTCTGGAT
* * * * * * *
88235524 AGGAAAGCCTTTTTGGTGAGTACTAGATATAAAAGATAGCCTCTGTGGCATAACTCTGGACT
1 AGGAAAGCCTTTTTGGTGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAACTCTGGA-T
*
88235586 -TGAAAGCCTTTTTGGTGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAACTCTGGAT
1 AGGAAAGCCTTTTTGGTGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAACTCTGGAT
* * * ** * * * * * * *
88235646 AGGAAAGCCTTTGTGATGAGTATTGGATAT-AATGATAGCTTTTGTGGCAAAACTCTAGAC
1 AGGAAAGCCTTTTTGGTGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAACTCTGGAT
* * * * *
88235706 AGGAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAAAACCTTTGTGGCA
1 AGGAAAGCCTTTTTGGTGAGTACTAAATGTAAAGGACAACCTTTGTGGCA
88235756 GCCTCTGTTT
Statistics
Matches: 188, Mismatches: 41, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
60 51 0.27
61 136 0.72
62 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (61 bp):
AGGAAAGCCTTTTTGGTGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAACTCTGGAT
Found at i:88235747 original size:121 final size:122
Alignment explanation
Indices: 88235463--88235755 Score: 390
Period size: 122 Copynumber: 2.4 Consensus size: 122
88235453 CACCAAGAGA
* * *
88235463 AGGAAAGCCTTTATGGCAAGTACTAAATGTAAAGGACATCCTTTGTGGGAAAAATCTGGATAGGA
1 AGGAAAGCCTTTATGGCGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAAATCTGGATAGGA
* * * *
88235528 AAGCCTTTTTGGTGAGTACTAGATATAAAAGATAGCCTCTGTGGCATAACTCTGGAC
66 AAGCCTTTGTGATGAGTACTAGATATAAAAGATAGCCTCTGTGGCAAAACTCTAGAC
** * * *
88235585 TTGAAAGCCTTTTTGGTGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAACTCTGGATAGGA
1 AGGAAAGCCTTTATGGCGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAAATCTGGATAGGA
* * * * *
88235650 AAGCCTTTGTGATGAGTATTGGATAT-AATGATAGCTTTTGTGGCAAAACTCTAGAC
66 AAGCCTTTGTGATGAGTACTAGATATAAAAGATAGCCTCTGTGGCAAAACTCTAGAC
* * * *
88235706 AGGAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAAAACCTTTGTGGCA
1 AGGAAAGCCTTTATGGCGAGTACTAAATGTAAAGGACAACCTTTGTGGCA
88235756 GCCTCTGTTT
Statistics
Matches: 147, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
121 68 0.46
122 79 0.54
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (122 bp):
AGGAAAGCCTTTATGGCGAGTACTAAATGTAAAGGACAACCTTTGTGGCAAAAATCTGGATAGGA
AAGCCTTTGTGATGAGTACTAGATATAAAAGATAGCCTCTGTGGCAAAACTCTAGAC
Found at i:88235833 original size:29 final size:28
Alignment explanation
Indices: 88235766--88235833 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
88235756 GCCTCTGTTT
* *
88235766 AAGAATGCCTTTGTGGTATATCTCTTAA
1 AAGAAAGCCTTTGTGGTAGATCTCTTAA
*
88235794 AGGAAATGCCTTTGTGGT-GATCTCTGTCAA
1 AAGAAA-GCCTTTGTGGTAGATCTCT-T-AA
88235824 AAGAAAGCCT
1 AAGAAAGCCT
88235834 CTGTAGTTAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
28 10 0.30
29 16 0.48
30 7 0.21
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (28 bp):
AAGAAAGCCTTTGTGGTAGATCTCTTAA
Found at i:88241103 original size:31 final size:31
Alignment explanation
Indices: 88241068--88241130 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
88241058 AATAAAGTAG
* *
88241068 ATTATATATTATTTTA-ATAATACTATATATT
1 ATTATATATTAATTTATATAATAAT-TATATT
* *
88241099 ATTATTTCTTAATTTATATAATAATTATATT
1 ATTATATATTAATTTATATAATAATTATATT
88241130 A
1 A
88241131 AGAATATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (31 bp):
ATTATATATTAATTTATATAATAATTATATT
Found at i:88241486 original size:16 final size:15
Alignment explanation
Indices: 88241429--88241488 Score: 59
Period size: 16 Copynumber: 3.9 Consensus size: 15
88241419 GTTACATTTC
*
88241429 TATTCCATTAC-GGT
1 TATTCCATTACAGCT
*
88241443 CTATTCCATTATAGCT
1 -TATTCCATTACAGCT
*
88241459 CTATTCAATTACAGCCT
1 -TATTCCATTACAG-CT
88241476 TATTCCATTACAG
1 TATTCCATTACAG
88241489 TGAACCAAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
15 10 0.26
16 26 0.68
17 2 0.05
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (15 bp):
TATTCCATTACAGCT
Found at i:88244020 original size:48 final size:48
Alignment explanation
Indices: 88243944--88244122 Score: 202
Period size: 48 Copynumber: 3.7 Consensus size: 48
88243934 AGGGTAAATT
*
88243944 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGTTCTCATAATGTG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGTTCTCATAATGTG
* * ** * **
88243992 GCTGATGCCATGTCCCAGACATGATCTTACATTAGCACACAT-AT-CA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGTTCTCATAATGTG
* *
88244038 ACATCGATGCCCTGTCCCAGACATGGTCTTACACTA-TCTCTCATAATGTG
1 GC-T-GATGCCATGTCCCAGACATGGTCTTACACTAGT-TCTCATAATGTG
* *
88244088 GCCGATGCCATGTCCCATACATGGTCTTACACTAG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAG
88244123 CACACATATC
Statistics
Matches: 104, Mismatches: 21, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
46 1 0.01
47 3 0.03
48 97 0.93
49 2 0.02
50 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTAGTTCTCATAATGTG
Found at i:88244116 original size:96 final size:96
Alignment explanation
Indices: 88243947--88244133 Score: 304
Period size: 96 Copynumber: 1.9 Consensus size: 96
88243937 GTAAATTGCT
*
88243947 GATGCCATGTCCCAAACATGGTCTTACACTAGTTCTCATAATGTGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGTTCTCATAATGTGGCCGATGCCATGTCCCAGAC
*
88244012 ATGATCTTACATTAGCACACATATCAACATC
66 ATGATCTTACACTAGCACACATATCAACATC
* * *
88244043 GATGCCCTGTCCCAGACATGGTCTTACACTA-TCTCTCATAATGTGGCCGATGCCATGTCCCATA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGT-TCTCATAATGTGGCCGATGCCATGTCCCAGA
*
88244107 CATGGTCTTACACTAGCACACATATCA
65 CATGATCTTACACTAGCACACATATCA
88244134 CTCAAATGTC
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
95 1 0.01
96 83 0.99
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGTTCTCATAATGTGGCCGATGCCATGTCCCAGAC
ATGATCTTACACTAGCACACATATCAACATC
Found at i:88251251 original size:27 final size:27
Alignment explanation
Indices: 88251220--88251397 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
88251210 TAAATTGTAC
88251220 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88251247 TGCACTAAGTGTGCGAAATT-AATATG-
1 AGCACTAAGTGTGCG-ATTTGACTATGT
* * *
88251273 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
88251301 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
88251329 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88251356 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
88251383 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88251398 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.03
27 99 0.77
28 26 0.20
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:88251361 original size:82 final size:81
Alignment explanation
Indices: 88251221--88251376 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
88251211 AAATTGTACA
* *
88251221 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATTAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATTAATACGATGCACTAAGTGT
88251286 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* *
88251302 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATT-AATACGAT-GCACTAAG
*
88251365 TGTGCGAGTTGA
63 TGTGCGAATTGA
88251377 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 19 0.28
82 48 0.72
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATTAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:88251388 original size:82 final size:81
Alignment explanation
Indices: 88251217--88251397 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
88251207 GATTAAATTG
* *
88251217 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATTAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATTAATACGATGCACTAA
88251282 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
88251298 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATT-AATACGAT-GCAC
* **
88251361 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
88251380 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
88251398 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 21 0.25
82 63 0.75
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATTAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:88253100 original size:40 final size:40
Alignment explanation
Indices: 88253045--88253308 Score: 415
Period size: 40 Copynumber: 6.6 Consensus size: 40
88253035 GGATGATAAT
* * *
88253045 CGGGCCAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
*
88253085 CGGGCTAAG-CTCCGAAGGTATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATATC
*
88253125 CGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
88253165 CGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
88253205 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
88253245 CGGGCTAAGTGCCGAAGGCATTTGTGCGAGTTACTCTAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
88253285 CGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
88253309 AGCAAGTAGT
Statistics
Matches: 208, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
39 1 0.00
40 205 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:88253323 original size:120 final size:119
Alignment explanation
Indices: 88253040--88253340 Score: 392
Period size: 120 Copynumber: 2.5 Consensus size: 119
88253030 TATTCGGATG
* * * *
88253040 ATAATCGGGCCAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTC-CCGAAGG
*
88253103 TATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
63 CATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
88253160 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCA
* *
88253225 TTTGTGCGAGTTACTATATCCGGGCTAAGTGCCGAAGGCATTTGTGCGAGTTACT
65 TTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
88253280 CTAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCCAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAAG
88253341 ATGCTTGGGT
Statistics
Matches: 160, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
119 15 0.09
120 142 0.89
121 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:88253607 original size:22 final size:21
Alignment explanation
Indices: 88253566--88253609 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
88253556 GAATGTGCAT
88253566 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
88253588 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
88253610 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:88258947 original size:42 final size:43
Alignment explanation
Indices: 88258883--88258994 Score: 138
Period size: 42 Copynumber: 2.6 Consensus size: 43
88258873 CGTTGGCATC
*
88258883 GATTACGTGTAAGACCATGTCTGGGACA-TCAGCATTG-TATTT
1 GATTACGTGTAAGACCATGTCTGGGACAGT-AGCATCGATATTT
* * *
88258925 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTT
1 GATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGATATTT
* * *
88258968 GATTACATGTAAGACCACGTCTAGGAC
1 GATTACGTGTAAGACCATGTCTGGGAC
88258995 GTTGGCATTG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 31 0.53
43 28 0.47
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGATATTT
Found at i:88259001 original size:43 final size:42
Alignment explanation
Indices: 88258853--88259002 Score: 136
Period size: 43 Copynumber: 3.7 Consensus size: 42
88258843 ATGTGATTTT
*
88258853 GTGTAAAACCACGTCTGGGACGTTGGCATC------GATTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
* * ** * *
88258889 GTGTAAGACCATGTCTGGGACATCAGCATTGTATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
88258931 GTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTAC
* *
88258974 ATGTAAGACCACGTCTAGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
88259003 TGTACAAGCC
Statistics
Matches: 88, Mismatches: 15, Indels: 15
0.75 0.13 0.13
Matches are distributed among these distances:
36 24 0.27
42 30 0.34
43 33 0.38
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
Found at i:88270523 original size:17 final size:18
Alignment explanation
Indices: 88270501--88270541 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
88270491 GTTTAAATGG
88270501 ATTTAGCCCAGA-TGGTA
1 ATTTAGCCCAGACTGGTA
**
88270518 ATTTAGCCTGGACTGGTA
1 ATTTAGCCCAGACTGGTA
88270536 ATTTAG
1 ATTTAG
88270542 ATCTGAGCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (18 bp):
ATTTAGCCCAGACTGGTA
Found at i:88272490 original size:19 final size:19
Alignment explanation
Indices: 88272466--88272512 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
88272456 CTGCGGACAC
88272466 GGGCGTGTCTAGGGCACAT
1 GGGCGTGTCTAGGGCACAT
88272485 GGGCGTGTCTAGGGCACAT
1 GGGCGTGTCTAGGGCACAT
88272504 GGGCGTGTC
1 GGGCGTGTC
88272513 CCTGTGCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.13, C:0.21, G:0.45, T:0.21
Consensus pattern (19 bp):
GGGCGTGTCTAGGGCACAT
Found at i:88274575 original size:23 final size:23
Alignment explanation
Indices: 88274535--88274578 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
88274525 ATTCATTGGT
88274535 TCATTTACGCAATAATCACATAC
1 TCATTTACGCAATAATCACATAC
*
88274558 TCATTTAGGC-ATATATCACAT
1 TCATTTACGCAATA-ATCACAT
88274579 TACACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (23 bp):
TCATTTACGCAATAATCACATAC
Found at i:88279893 original size:22 final size:22
Alignment explanation
Indices: 88279846--88279895 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
88279836 CAAACTAAAA
* **
88279846 CACCACCATACAACCACCGTTT
1 CACCACCATACAACCACCATAG
*
88279868 CACCACCATACAACCACTATAG
1 CACCACCATACAACCACCATAG
88279890 CACCAC
1 CACCAC
88279896 TACATCACCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.46, G:0.04, T:0.14
Consensus pattern (22 bp):
CACCACCATACAACCACCATAG
Found at i:88279894 original size:11 final size:11
Alignment explanation
Indices: 88279880--88279918 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
88279870 CCACCATACA
* *
88279880 ACCACTATAGC
1 ACCACTACAAC
*
88279891 ACCACTACATC
1 ACCACTACAAC
88279902 ACCACTACAAC
1 ACCACTACAAC
88279913 ACCACT
1 ACCACT
88279919 GTACCACCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.38, C:0.44, G:0.03, T:0.15
Consensus pattern (11 bp):
ACCACTACAAC
Found at i:88282934 original size:55 final size:53
Alignment explanation
Indices: 88282846--88283101 Score: 156
Period size: 55 Copynumber: 4.8 Consensus size: 53
88282836 CATTAGGCTT
* * * *
88282846 TAAGGATACGATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGG
1 TAAGGATACCATGTAAGACCATGCAAAGACATGG-AATTGGTAA-GTTTCTAAGG
* * * *
88282901 TAAGGATACCATGTAAGACCATGTAAAGACATGGCATTGATAAGTTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCAAAGACATGGAATTGGTAAGTT--TCTAAGG
* * * * *
88282956 CAAAGG-TCCCATGTAAGACCATGCCAATG-CATGGCATTGGTGAG-TTCATAAGG
1 -TAAGGATACCATGTAAGACCATG-CAAAGACATGGAATTGGTAAGTTTC-TAAGG
** * *
88283009 CCAGGATACCATGTAAGACCATGTC-GAGATATGGCAA-TGGTAAGTTTC-AA--
1 TAAGGATACCATGTAAGACCATG-CAAAGACATGG-AATTGGTAAGTTTCTAAGG
** *
88283059 -AAGGATATGATGTAAGACCATG-ACAAGTCATGGCAA-TGGTAAG
1 TAAGGATACCATGTAAGACCATGCA-AAGACATGG-AATTGGTAAG
88283102 GTACCCGTGT
Statistics
Matches: 160, Mismatches: 30, Indels: 28
0.73 0.14 0.13
Matches are distributed among these distances:
49 35 0.22
52 7 0.04
53 35 0.22
54 12 0.08
55 64 0.40
56 7 0.04
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCAAAGACATGGAATTGGTAAGTTTCTAAGG
Found at i:88283043 original size:53 final size:56
Alignment explanation
Indices: 88282902--88283054 Score: 172
Period size: 53 Copynumber: 2.8 Consensus size: 56
88282892 TTTCTAAGGT
* * *
88282902 AAGGATACCATGTAAGACCATGTAAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGATATGGCATTGGTAAGTTACTATAAGGCA
* * * *
88282958 AAGG-TCCCATGTAAGACCATGCCAATG-CATGGCATTGGTGAGTT-C-ATAAGGC-
1 AAGGATACCATGTAAGACCATGTCAA-GATATGGCATTGGTAAGTTACTATAAGGCA
* * *
88283010 CAGGATACCATGTAAGACCATGTCGAGATATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGATATGGCATTGGTAAGTT
88283055 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
52 4 0.05
53 39 0.48
54 1 0.01
55 33 0.40
56 5 0.06
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGTCAAGATATGGCATTGGTAAGTTACTATAAGGCA
Found at i:88283053 original size:108 final size:110
Alignment explanation
Indices: 88282856--88283054 Score: 271
Period size: 108 Copynumber: 1.8 Consensus size: 110
88282846 TAAGGATACG
*
88282856 ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGTAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
*
88282921 ATGTAAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCC
66 ATGTAAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCC
* * *
88282966 ATGTAAGACCATGCCAAT-GCATGG-CATTGGTGA-G-TTCATAAGGCCAGGATACCATGTAAGA
1 ATGTAAGACCATGCC-ATGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGA
** * *
88283027 CCATGTCGAGATATGGCAATGGTAAGTT
64 CCATGTAAAGACATGGCAATGATAAGTT
88283055 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
107 3 0.04
108 45 0.58
109 7 0.09
110 21 0.27
111 2 0.03
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.25
Consensus pattern (110 bp):
ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
ATGTAAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCC
Found at i:88283313 original size:16 final size:16
Alignment explanation
Indices: 88283292--88283322 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
88283282 ATAAATTTGA
88283292 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
88283308 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
88283323 AATGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:88290636 original size:55 final size:53
Alignment explanation
Indices: 88290548--88290802 Score: 216
Period size: 55 Copynumber: 4.8 Consensus size: 53
88290538 ATTAGGGTTT
*
88290548 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * * *
88290603 AAGGATGCCATGTAAGACCATGTCAAGAAATGGCATTGATAAGTTACTATAACGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * * *
88290658 AAATG-TCCCATCTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * * *
88290711 AATGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* ** * * *
88290760 AAGGATACGACATAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
88290803 GTACCCGTGT
Statistics
Matches: 163, Mismatches: 31, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
49 36 0.22
52 7 0.04
53 39 0.24
54 11 0.07
55 67 0.41
56 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:88290754 original size:108 final size:110
Alignment explanation
Indices: 88290555--88290755 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
88290545 TTTAAGGATA
* *
88290555 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATGCCATGTAAGA
1 CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
88290620 CCATGTCAAGAAATGGCATTGATAAGTTACTATAACGCAAATGTC
66 CCATGTCAAGAAATGGCAATGATAAGTTACTATAACGCAAATGTC
* *
88290665 CCATCTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAATGATACCATGTAAG
1 CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * *
88290727 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGAAATGGCAATGATAAGTT
88290756 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGAAATGGCAATGATAAGTTACTATAACGCAAATGTC
Found at i:88291015 original size:16 final size:16
Alignment explanation
Indices: 88290994--88291024 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
88290984 ATAAATTTGA
88290994 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
88291010 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
88291025 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:88296460 original size:58 final size:58
Alignment explanation
Indices: 88296370--88296482 Score: 217
Period size: 58 Copynumber: 1.9 Consensus size: 58
88296360 GTTATTGTAG
*
88296370 GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTTTAAAACACAGC
1 GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTCTAAAACACAGC
88296428 GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTCTAAAACAC
1 GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTCTAAAACAC
88296483 GGCATCTAAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (58 bp):
GCAAATTCAACCAAAGATAGATACTTCTCCCAACTGCCTTCAAATTCTAAAACACAGC
Found at i:88301993 original size:68 final size:68
Alignment explanation
Indices: 88301842--88301999 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
88301832 CTAGCCAATT
* * * *
88301842 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGGATCACACATGCGACTTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGGATCACACATGCGACCTAGCTACA
**
88301907 TTTA
65 CATA
* *
88301911 TATCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGGATCACACATGCGACCTAGCTA
88301973 CTACATA
63 C-ACATA
88301980 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
88302000 ACACATGATG
Statistics
Matches: 76, Mismatches: 8, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
68 35 0.46
69 8 0.11
70 7 0.09
71 26 0.34
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGGATCACACATGCGACCTAGCTACAC
ATA
Found at i:88311126 original size:49 final size:49
Alignment explanation
Indices: 88311020--88311152 Score: 133
Period size: 49 Copynumber: 2.7 Consensus size: 49
88311010 GTACATTAAA
* * * *
88311020 GTCAATACCTTATCCCAGACACGTCTTACATTGACTTTCATATATCGAG
1 GTCAATGCCATATCCCAGACACGTCTTACACTGACTCTCATATATCGAG
* * * * * *
88311069 GCCGATGCCATATCCCAGACATGTCTTACACTGGCTCTCATTTAT-TAG
1 GTCAATGCCATATCCCAGACACGTCTTACACTGACTCTCATATATCGAG
* * *
88311117 TGTCAATGCCATCTCCCACACAGGTCTTACACTGAC
1 -GTCAATGCCATATCCCAGACACGTCTTACACTGAC
88311153 ACACAACAAG
Statistics
Matches: 67, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
48 2 0.03
49 65 0.97
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (49 bp):
GTCAATGCCATATCCCAGACACGTCTTACACTGACTCTCATATATCGAG
Done.