Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 27 of 316
Found at i:7614980 original size:35 final size:35
Alignment explanation
Indices: 7614910--7614980 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
7614900 TAACCTTCCG
* ***
7614910 CTACTATCAGCTAATCTGGACAAGAAATTTGCATA
1 CTACGATCAGCTAATCTGGACAAGAAATCCACATA
*
7614945 CTACGATCAGCTGATCTGGACATA-AAATCCACATA
1 CTACGATCAGCTAATCTGGACA-AGAAATCCACATA
7614980 C
1 C
7614981 CTACACATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 29 0.97
36 1 0.03
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (35 bp):
CTACGATCAGCTAATCTGGACAAGAAATCCACATA
Found at i:7617341 original size:197 final size:197
Alignment explanation
Indices: 7617006--7617400 Score: 781
Period size: 197 Copynumber: 2.0 Consensus size: 197
7616996 ATATTCATCA
7617006 CACATAAATATACATATGATAAAAGAAGAAGGGATAATATTAATTTTGCTTGTGGAAAACGAAAT
1 CACATAAATATACATATGATAAAAGAAGAAGGGATAATATTAATTTTGCTTGTGGAAAACGAAAT
*
7617071 TGAGCAATTTAGCTAACACCAACAACAAATGTATGGTTTCATATTGCATATATGTATATAATGAA
66 TGAGCAATTTAGCTAACACCAACAACAAATGTATGGTTTCATATTGCATATATATATATAATGAA
7617136 TTGGTTGTAATTTTCTGATTTGTGAGTGTAATGGCCATCTCCCAATGTCCCACCATCTCCAAAAT
131 TTGGTTGTAATTTTCTGATTTGTGAGTGTAATGGCCATCTCCCAATGTCCCACCATCTCCAAAAT
7617201 GG
196 GG
7617203 CACATAAATATACATATGATAAAAGAAGAAGGGATAATATTAATTTTGCTTGTGGAAAACGAAAT
1 CACATAAATATACATATGATAAAAGAAGAAGGGATAATATTAATTTTGCTTGTGGAAAACGAAAT
7617268 TGAGCAATTTAGCTAACACCAACAACAAATGTATGGTTTCATATTGCATATATATATATAATGAA
66 TGAGCAATTTAGCTAACACCAACAACAAATGTATGGTTTCATATTGCATATATATATATAATGAA
7617333 TTGGTTGTAATTTTCTGATTTGTGAGTGTAATGGCCATCTCCCAATGTCCCACCATCTCCAAAAT
131 TTGGTTGTAATTTTCTGATTTGTGAGTGTAATGGCCATCTCCCAATGTCCCACCATCTCCAAAAT
7617398 GG
196 GG
7617400 C
1 C
7617401 TTAGCCAGAG
Statistics
Matches: 197, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
197 197 1.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (197 bp):
CACATAAATATACATATGATAAAAGAAGAAGGGATAATATTAATTTTGCTTGTGGAAAACGAAAT
TGAGCAATTTAGCTAACACCAACAACAAATGTATGGTTTCATATTGCATATATATATATAATGAA
TTGGTTGTAATTTTCTGATTTGTGAGTGTAATGGCCATCTCCCAATGTCCCACCATCTCCAAAAT
GG
Found at i:7622833 original size:16 final size:17
Alignment explanation
Indices: 7622808--7622850 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
7622798 GTTTTTTTAA
*
7622808 ATATTACTTTAATTTGT
1 ATATTGCTTTAATTTGT
*
7622825 -TATTGCTTTCATTTGT
1 ATATTGCTTTAATTTGT
7622841 ATAATTGCTT
1 AT-ATTGCTT
7622851 CTGGAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 14 0.64
17 1 0.05
18 7 0.32
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.58
Consensus pattern (17 bp):
ATATTGCTTTAATTTGT
Found at i:7626767 original size:11 final size:11
Alignment explanation
Indices: 7626751--7626783 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
7626741 AAGCATACAT
7626751 AAAAAAAAAGA
1 AAAAAAAAAGA
7626762 AAAAAAAAAGA
1 AAAAAAAAAGA
*
7626773 AAGAAAAAAGA
1 AAAAAAAAAGA
7626784 GGAGGAGGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:7626769 original size:15 final size:15
Alignment explanation
Indices: 7626751--7626781 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7626741 AAGCATACAT
7626751 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
*
7626766 AAAAAGAAAGAAAAA
1 AAAAAAAAAGAAAAA
7626781 A
1 A
7626782 GAGGAGGAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAAAA
Found at i:7626788 original size:3 final size:3
Alignment explanation
Indices: 7626782--7626817 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
7626772 AAAGAAAAAA
*
7626782 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAA GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
7626818 AAGAAGAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:7629206 original size:18 final size:18
Alignment explanation
Indices: 7629183--7629218 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7629173 ACACGCCTTG
7629183 AAGCCTTGTCATATTTCT
1 AAGCCTTGTCATATTTCT
7629201 AAGCCTTGTCATATTTCT
1 AAGCCTTGTCATATTTCT
7629219 TCTTTTTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (18 bp):
AAGCCTTGTCATATTTCT
Found at i:7639237 original size:17 final size:17
Alignment explanation
Indices: 7639217--7639250 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7639207 AAATTTAAAC
*
7639217 TTTTTTATATTTTTTAA
1 TTTTTTAAATTTTTTAA
7639234 TTTTTTAAATTTTTTAA
1 TTTTTTAAATTTTTTAA
7639251 AAATATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTAAATTTTTTAA
Found at i:7639254 original size:11 final size:9
Alignment explanation
Indices: 7639210--7639297 Score: 63
Period size: 9 Copynumber: 9.9 Consensus size: 9
7639200 ATTTTTAAAA
7639210 TTTAAACTTT
1 TTTAAA-TTT
*
7639220 TTTATATTT
1 TTTAAATTT
7639229 TTT-AATTT
1 TTTAAATTT
7639237 TTTAAATTT
1 TTTAAATTT
**
7639246 TTTAAA-AA
1 TTTAAATTT
*
7639254 TATAAATTT
1 TTTAAATTT
**
7639263 TGAAAATTT
1 TTTAAATTT
* *
7639272 TATAAATAT
1 TTTAAATTT
*
7639281 TTTGAATTT
1 TTTAAATTT
*
7639290 TTAAAATT
1 TTTAAATT
7639298 AGTTTGAATT
Statistics
Matches: 59, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
8 12 0.20
9 42 0.71
10 5 0.08
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (9 bp):
TTTAAATTT
Found at i:7639296 original size:18 final size:20
Alignment explanation
Indices: 7639259--7639307 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
7639249 AAAAATATAA
*
7639259 ATTTTGAAAATTTTATAAA-T
1 ATTTTG-AATTTTTATAAATT
7639279 ATTTTGAATTTTTA-AAATT
1 ATTTTGAATTTTTATAAATT
*
7639298 AGTTTGAATT
1 ATTTTGAATT
7639308 ATTTTGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 3 0.12
19 17 0.65
20 6 0.23
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:7644122 original size:28 final size:27
Alignment explanation
Indices: 7644066--7644123 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
7644056 TTAATTAGTC
* **
7644066 TTTAATTTTTTAAAATATTATATGTAT
1 TTTAATTTTTTAAAATACTATATAAAT
7644093 TTTAATTTTTTATAAATACTAT-TAAAAT
1 TTTAATTTTTTA-AAATACTATAT-AAAT
7644121 TTT
1 TTT
7644124 TTAAAAAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTAATTTTTTAAAATACTATATAAAT
Found at i:7645691 original size:52 final size:52
Alignment explanation
Indices: 7645615--7645797 Score: 206
Period size: 52 Copynumber: 3.5 Consensus size: 52
7645605 TATTATACTG
* * * ** * *
7645615 ATGCCATATCCCGGATATGGTCTTACATGGGAGCACTTATCACTT-TTCTCCA
1 ATGCCATAGCCCAGCTATGGTCTTACA-AAGATCACTTATCACTTGTTTTCCA
* * *
7645667 ATGCCATAGCCCAGCTATGATCTTATACAGATCACTTATCACTTGTTTTCCA
1 ATGCCATAGCCCAGCTATGGTCTTACAAAGATCACTTATCACTTGTTTTCCA
* * * *
7645719 ATGCCATAGCTCAGCTATGGTCTTATACAAATATCACTTATCACTTGTTTTTCG
1 ATGCCATAGCCCAGCTATGGTC-T-TACAAAGATCACTTATCACTTGTTTTCCA
7645773 ATGCCATAGCCCAGCTATGGTCTTA
1 ATGCCATAGCCCAGCTATGGTCTTA
7645798 TACGGATATC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
51 14 0.13
52 50 0.45
53 2 0.02
54 45 0.41
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (52 bp):
ATGCCATAGCCCAGCTATGGTCTTACAAAGATCACTTATCACTTGTTTTCCA
Found at i:7645761 original size:54 final size:52
Alignment explanation
Indices: 7645648--7645811 Score: 231
Period size: 54 Copynumber: 3.1 Consensus size: 52
7645638 TACATGGGAG
* * *
7645648 CACTTATCACTT-TTCTCCAATGCCATAGCCCAGCTATGATCTTATACAGAT
1 CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATACATAT
*
7645699 CACTTATCACTTGTTTTCCAATGCCATAGCTCAGCTATGGTCTTATACAAATAT
1 CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATAC--ATAT
* *
7645753 CACTTATCACTTGTTTTTCGATGCCATAGCCCAGCTATGGTCTTATACGGATAT
1 CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATAC--ATAT
7645807 CACTT
1 CACTT
7645812 GCAATACCCC
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
51 12 0.12
52 32 0.32
54 57 0.56
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (52 bp):
CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATACATAT
Found at i:7645983 original size:14 final size:14
Alignment explanation
Indices: 7645964--7645993 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7645954 TTATATCAAG
7645964 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
7645978 ACCAATCCAATTCA
1 ACCAATCCAAATCA
7645992 AC
1 AC
7645994 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:7650588 original size:15 final size:13
Alignment explanation
Indices: 7650558--7650604 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
7650548 GACTTATTTA
*
7650558 TTTTTAATTTCAT
1 TTTTTTATTTCAT
7650571 TTTTTTATTTCCACT
1 TTTTTTATTT-CA-T
7650586 TTTTTTATTT-AT
1 TTTTTTATTTCAT
7650598 TTATTTT
1 TT-TTTT
7650605 CTAAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.10
13 14 0.47
14 2 0.07
15 11 0.37
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTATTTCAT
Found at i:7653853 original size:12 final size:12
Alignment explanation
Indices: 7653836--7653860 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7653826 TTTTTTTTTT
7653836 AAATTTCATAAA
1 AAATTTCATAAA
7653848 AAATTTCATAAA
1 AAATTTCATAAA
7653860 A
1 A
7653861 CTTTTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATTTCATAAA
Found at i:7658635 original size:6 final size:6
Alignment explanation
Indices: 7658624--7658656 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7658614 AGTATATTAC
*
7658624 TTTTTA TTTTTA TTTTTA TTTTT- TTTTTC TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
7658657 AAGGAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTTTA
Found at i:7659545 original size:21 final size:21
Alignment explanation
Indices: 7659519--7659579 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 21
7659509 ATTAATTAAT
7659519 TTTTAAAAATTAAAAAAACTA
1 TTTTAAAAATTAAAAAAACTA
* *
7659540 TTTTAATATATATAAAAAAAATTA
1 TTTTAA-A-A-ATTAAAAAAACTA
7659564 TTTT-AAAATTAAAAAA
1 TTTTAAAAATTAAAAAA
7659580 TTAATTGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
20 8 0.24
21 7 0.21
22 2 0.06
23 2 0.06
24 15 0.44
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TTTTAAAAATTAAAAAAACTA
Found at i:7662774 original size:26 final size:26
Alignment explanation
Indices: 7662718--7662775 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
7662708 TTTCATTATT
7662718 ATTA-TTATATTTTAGGTATTATATC
1 ATTATTTATATTTTAGGTATTATATC
7662743 -TATATTTATA-TTTAGGTATTAATATC
1 AT-TATTTATATTTTAGGTATT-ATATC
7662769 ATTATTT
1 ATTATTT
7662776 TACTATTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
24 1 0.03
25 12 0.41
26 15 0.52
27 1 0.03
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (26 bp):
ATTATTTATATTTTAGGTATTATATC
Found at i:7662807 original size:3 final size:3
Alignment explanation
Indices: 7662799--7662915 Score: 55
Period size: 3 Copynumber: 40.3 Consensus size: 3
7662789 TTTTTCATAC
* * * * * * * **
7662799 TAT TAT TAT TAT CAC TAT TAT TAC TAT TAG CAC TAT TTT TAT TGC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
7662847 TAT T-T AAT ATAT TAT T-T T-T TAT TAC TAT CAT TAC TAT TAT TA-
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
7662889 TAT TGT TAT TAT TAC TAT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7662916 GTATTATCCT
Statistics
Matches: 80, Mismatches: 29, Indels: 10
0.67 0.24 0.08
Matches are distributed among these distances:
2 9 0.11
3 69 0.86
4 2 0.03
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7662900 original size:14 final size:13
Alignment explanation
Indices: 7662844--7662922 Score: 58
Period size: 14 Copynumber: 6.1 Consensus size: 13
7662834 TTTTTATTGC
*
7662844 TATTATT-TAATA
1 TATTATTATATTA
7662856 TATTATT-T-TT-
1 TATTATTATATTA
*
7662866 TATTACTATCATTA
1 TATTATTAT-ATTA
*
7662880 CTATTATTATATTGT
1 -TATTATTATATT-A
7662895 TATTATTACTATTA
1 TATTATTA-TATTA
*
7662909 TATTATTGTATTA
1 TATTATTATATTA
7662922 T
1 T
7662923 CCTTACTTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
10 6 0.11
11 2 0.04
12 8 0.15
13 8 0.15
14 18 0.33
15 12 0.22
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61
Consensus pattern (13 bp):
TATTATTATATTA
Found at i:7662902 original size:23 final size:22
Alignment explanation
Indices: 7662876--7662922 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
7662866 TATTACTATC
7662876 ATTACTATTAT-TATATTGTTATT
1 ATTACTATTATAT-TATTG-TATT
7662899 ATTACTATTATATTATTGTATT
1 ATTACTATTATATTATTGTATT
7662921 AT
1 AT
7662923 CCTTACTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.26
23 16 0.70
24 1 0.04
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (22 bp):
ATTACTATTATATTATTGTATT
Found at i:7665202 original size:5 final size:5
Alignment explanation
Indices: 7665174--7665214 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
7665164 TTCCTTTCTT
*
7665174 TTGCA TT-CA TTTCA -TGCA TCTGCA TTGCA TTGCA TTGCA TT
1 TTGCA TTGCA TTGCA TTGCA T-TGCA TTGCA TTGCA TTGCA TT
7665215 ATTTGCATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
4 7 0.22
5 20 0.62
6 5 0.16
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.44
Consensus pattern (5 bp):
TTGCA
Found at i:7668770 original size:25 final size:25
Alignment explanation
Indices: 7668736--7668785 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7668726 CTACAAAGTC
7668736 TAATTTATCAATCCTTGAGATCATA
1 TAATTTATCAATCCTTGAGATCATA
7668761 TAATTTATCAATCCTTGAGATCATA
1 TAATTTATCAATCCTTGAGATCATA
7668786 ACTTCTGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (25 bp):
TAATTTATCAATCCTTGAGATCATA
Found at i:7674298 original size:14 final size:15
Alignment explanation
Indices: 7674267--7674313 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 15
7674257 ATTGGTTAAT
*
7674267 AATAAAAAGATATAA
1 AATAAAAATATATAA
*
7674282 AATAAAAATAT-TTA
1 AATAAAAATATATAA
*
7674296 AATAAAAATTTA-AA
1 AATAAAAATATATAA
7674310 AATA
1 AATA
7674314 TTAAAGTAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (15 bp):
AATAAAAATATATAA
Found at i:7679256 original size:18 final size:19
Alignment explanation
Indices: 7679220--7679266 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
7679210 TTTAAATTAA
7679220 AAATATATTCAAACCTTA-T
1 AAATAT-TTCAAACCTTATT
**
7679239 AAATATTTCAAATTTTATT
1 AAATATTTCAAACCTTATT
7679258 AAATCATTT
1 AAAT-ATTT
7679267 AAAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 11 0.46
20 4 0.17
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATATTTCAAACCTTATT
Found at i:7680724 original size:27 final size:27
Alignment explanation
Indices: 7680694--7680750 Score: 64
Period size: 30 Copynumber: 2.0 Consensus size: 27
7680684 GGCTGAAACT
7680694 AAATT-TTAATTTTTT-TTAATTTTTAAA
1 AAATTATTAATTTTTTATT-A-TTTTAAA
7680721 AAATTAAATTAATTTTTTATTATTTTAAA
1 AAATT--ATTAATTTTTTATTATTTTAAA
7680750 A
1 A
7680751 GTTTAAAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
27 5 0.19
29 8 0.31
30 11 0.42
31 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (27 bp):
AAATTATTAATTTTTTATTATTTTAAA
Found at i:7680756 original size:29 final size:29
Alignment explanation
Indices: 7680699--7680772 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 29
7680689 AAACTAAATT
7680699 TTAATTTTTTTTAATTTTTAAAAAATTAAA-
1 TTAATTTTTTTT-A-TTTTAAAAAATTAAAG
**
7680729 TTAATTTTTTATTATTTTAAAAGTTTAAAG
1 TTAATTTTTT-TTATTTTAAAAAATTAAAG
7680759 TGTAATTTTATTTT
1 T-TAATTTT-TTTT
7680773 TATTAATTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 13 0.34
30 12 0.32
31 11 0.29
32 2 0.05
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.59
Consensus pattern (29 bp):
TTAATTTTTTTTATTTTAAAAAATTAAAG
Found at i:7689706 original size:3 final size:3
Alignment explanation
Indices: 7689698--7689739 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7689688 TATTCCAATG
7689698 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7689740 GTTTATGCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7689845 original size:19 final size:20
Alignment explanation
Indices: 7689799--7689850 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
7689789 ACTTATACAT
* *
7689799 ACTTAAATATATTTTTTTAC
1 ACTTACATATATTTTTATAC
*
7689819 A-TTTCATA-ATTTTTATAC
1 ACTTACATATATTTTTATAC
7689837 ACTTACATATATTT
1 ACTTACATATATTT
7689851 ATGCATATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 10 0.38
19 11 0.42
20 5 0.19
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.54
Consensus pattern (20 bp):
ACTTACATATATTTTTATAC
Found at i:7690524 original size:106 final size:106
Alignment explanation
Indices: 7690332--7690532 Score: 366
Period size: 106 Copynumber: 1.9 Consensus size: 106
7690322 AAAATTTTTC
7690332 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
* *
7690397 TTCTTGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTT
66 TTCTCGTTCGACCAAACAGCCAAATATCCTTTTTAAACTTT
*
7690438 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
*
7690503 TTCTCGTTCGACTAAACAGCCAAATATCCT
66 TTCTCGTTCGACCAAACAGCCAAATATCCT
7690533 CTTAAAGCTT
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 91 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (106 bp):
TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
TTCTCGTTCGACCAAACAGCCAAATATCCTTTTTAAACTTT
Found at i:7694477 original size:14 final size:14
Alignment explanation
Indices: 7694458--7694486 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7694448 TACAATATAT
7694458 ATAAGAATTATACG
1 ATAAGAATTATACG
7694472 ATAAGAATTATACG
1 ATAAGAATTATACG
7694486 A
1 A
7694487 ATCTATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:7697111 original size:53 final size:52
Alignment explanation
Indices: 7696975--7697118 Score: 168
Period size: 52 Copynumber: 2.8 Consensus size: 52
7696965 ATATGATATA
*
7696975 TGATTCCGTATAAGACCATATCCGA-GCTATGGCATCGGTACAATGTGATTCG
1 TGATTCCGTATAAGACCATA-CCTAGGCTATGGCATCGGTACAATGTGATTCG
* * ** *
7697027 TG-TTCCCGTATAAGACCACAGCTAGGCTATGGCATCGGTATGATGTG-TTAATG
1 TGATT-CCGTATAAGACCATACCTAGGCTATGGCATCGGTACAATGTGATT--CG
*
7697080 TGATTCCGTATAAGACCATACCTAGGATATGGCATCGGT
1 TGATTCCGTATAAGACCATACCTAGGCTATGGCATCGGT
7697119 GTGTGATGTG
Statistics
Matches: 78, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
51 6 0.08
52 36 0.46
53 34 0.44
54 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (52 bp):
TGATTCCGTATAAGACCATACCTAGGCTATGGCATCGGTACAATGTGATTCG
Found at i:7698209 original size:20 final size:20
Alignment explanation
Indices: 7698184--7698241 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
7698174 TGCACATGGG
*
7698184 CAGGCCACACGGGCATGTTC
1 CAGGCCACACGGGCATGTCC
*
7698204 CAGGCCACACGGGCGTGTCC
1 CAGGCCACACGGGCATGTCC
*
7698224 CAAGCCACACGGGCATGT
1 CAGGCCACACGGGCATGT
7698242 GCCCCTATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.21, C:0.36, G:0.31, T:0.12
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:7702670 original size:12 final size:12
Alignment explanation
Indices: 7702652--7702690 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7702642 TATCTAATTC
7702652 AATGTTCAGACA
1 AATGTTCAGACA
* *
7702664 CATGTTCAGGCA
1 AATGTTCAGACA
*
7702676 AATGTTTAGACA
1 AATGTTCAGACA
7702688 AAT
1 AAT
7702691 AATGTTTGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (12 bp):
AATGTTCAGACA
Found at i:7703230 original size:35 final size:35
Alignment explanation
Indices: 7703191--7703262 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
7703181 TTCTTTAGAG
* *
7703191 TGTTAGCACATTCAGGCTAGATATAACCATATCCT
1 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
7703226 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
1 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
7703261 TG
1 TG
7703263 GAATTCATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (35 bp):
TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
Found at i:7705993 original size:13 final size:13
Alignment explanation
Indices: 7705975--7705999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7705965 ATCCTACACA
7705975 CCCGTGTGATTCG
1 CCCGTGTGATTCG
7705988 CCCGTGTGATTC
1 CCCGTGTGATTC
7706000 ACTTGTGTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.28, T:0.32
Consensus pattern (13 bp):
CCCGTGTGATTCG
Found at i:7712782 original size:38 final size:38
Alignment explanation
Indices: 7712732--7712825 Score: 93
Period size: 40 Copynumber: 2.4 Consensus size: 38
7712722 CCATCTCCGT
* * *
7712732 CCCACCCAACACACCA-TGTGGGGATAAAAGT-GACCCA
1 CCCACCCTACACACCAGTATGGGGATAAAA-TCAACCCA
*
7712769 CCCAGCCCTACACACCAAGTATGGGGATTAAATCAACCCA
1 CCCA-CCCTACACACC-AGTATGGGGATAAAATCAACCCA
*
7712809 TCCAACCCTACACACCA
1 -CCCACCCTACACACCA
7712826 AAGGGTACCG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
37 4 0.09
38 10 0.21
39 3 0.06
40 27 0.57
41 3 0.06
ACGTcount: A:0.35, C:0.38, G:0.14, T:0.13
Consensus pattern (38 bp):
CCCACCCTACACACCAGTATGGGGATAAAATCAACCCA
Found at i:7720102 original size:63 final size:63
Alignment explanation
Indices: 7720032--7720154 Score: 167
Period size: 63 Copynumber: 2.0 Consensus size: 63
7720022 AGATGCAGGG
* *
7720032 GTCACACGAGTAAGACACACAAACGTGTGTCTAGGAC-GTGTAACTAACTAAGTTTATATTAGA
1 GTCACACGAGTAAAACACACAAACATGTGTCTAGG-CTGTGTAACTAACTAAGTTTATATTAGA
*** * *
7720095 GTCACACGAGTAAAACACACGGGCATGTGTCTAGGCTGTGTAACTCACTGAGTTTATATT
1 GTCACACGAGTAAAACACACAAACATGTGTCTAGGCTGTGTAACTAACTAAGTTTATATT
7720155 TGAGAGACAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
62 1 0.02
63 51 0.98
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (63 bp):
GTCACACGAGTAAAACACACAAACATGTGTCTAGGCTGTGTAACTAACTAAGTTTATATTAGA
Found at i:7723083 original size:16 final size:16
Alignment explanation
Indices: 7723062--7723094 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7723052 ACATATTTAA
7723062 TAATATAACAAATTAT
1 TAATATAACAAATTAT
*
7723078 TAATATAACTAATTAT
1 TAATATAACAAATTAT
7723094 T
1 T
7723095 TCAATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATATAACAAATTAT
Found at i:7723191 original size:27 final size:25
Alignment explanation
Indices: 7723161--7723215 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 25
7723151 AATATTCTTC
*
7723161 ATATATTAGTGAAAAATATTTATATTA
1 ATATATTAATGAAAAATA--TATATTA
* *
7723188 ATATTTTAATGATAAATATATATTA
1 ATATATTAATGAAAAATATATATTA
7723213 ATA
1 ATA
7723216 ATATAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.40
27 15 0.60
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (25 bp):
ATATATTAATGAAAAATATATATTA
Found at i:7723213 original size:17 final size:17
Alignment explanation
Indices: 7723188--7723238 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
7723178 ATTTATATTA
* *
7723188 ATATTTTAATGATAAAT
1 ATATATTAATAATAAAT
7723205 ATATATTAATAATATAA-
1 ATATATTAATAATA-AAT
7723222 ATATATTAATAATAAAT
1 ATATATTAATAATAAAT
7723239 TTTTTAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 2 0.07
17 26 0.87
18 2 0.07
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
ATATATTAATAATAAAT
Found at i:7729969 original size:88 final size:88
Alignment explanation
Indices: 7729857--7730043 Score: 257
Period size: 88 Copynumber: 2.1 Consensus size: 88
7729847 TGCGGTAATT
* * * *
7729857 CGCTGTACAAATACTTTACAGTTTAAACTGCCAGGTCAGATAATGGTACGCAGCATAGCTGATGT
1 CGCTGTACAAACACTTTACAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTAACGT
*
7729922 ACATACGATATAGTGCAGTAAAC
66 ACATACGATACAGTGCAGTAAAC
* ** *
7729945 CGTTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTATGCAGCATAGCTAACGT
1 CGCTGTACAAACACTTTACAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTAACGT
* * *
7730010 ACGTACGGTACAGTGCGGTAAAC
66 ACATACGATACAGTGCAGTAAAC
*
7730033 TGCTGTACAAA
1 CGCTGTACAAA
7730044 TAGGTTGCAG
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (88 bp):
CGCTGTACAAACACTTTACAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTAACGT
ACATACGATACAGTGCAGTAAAC
Found at i:7731824 original size:20 final size:20
Alignment explanation
Indices: 7731743--7731825 Score: 64
Period size: 20 Copynumber: 4.2 Consensus size: 20
7731733 AATATAATTC
7731743 TATTTATTAAATTTTATTTT
1 TATTTATTAAATTTTATTTT
* * * **
7731763 CATTTAATAAAATATTATTAA
1 TATTT-ATTAAATTTTATTTT
* *
7731784 TA-TTATTAGAA--ATAATTT
1 TATTTATTA-AATTTTATTTT
7731802 TATTTATTAAATTTTATTTT
1 TATTTATTAAATTTTATTTT
7731822 TATT
1 TATT
7731826 CAATAAAATG
Statistics
Matches: 45, Mismatches: 13, Indels: 10
0.66 0.19 0.15
Matches are distributed among these distances:
18 7 0.16
19 9 0.20
20 17 0.38
21 12 0.27
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (20 bp):
TATTTATTAAATTTTATTTT
Found at i:7732917 original size:21 final size:21
Alignment explanation
Indices: 7732887--7732930 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
7732877 TCTTTTGTTC
*
7732887 CTTTT-TTTTTGTTC-TTTCT
1 CTTTTCTTTTTTTTCTTTTCT
7732906 CTTTTCTTTTTTTTCTTTTCT
1 CTTTTCTTTTTTTTCTTTTCT
7732927 CTTT
1 CTTT
7732931 CGCCATAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.23
20 8 0.36
21 9 0.41
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (21 bp):
CTTTTCTTTTTTTTCTTTTCT
Found at i:7734980 original size:46 final size:47
Alignment explanation
Indices: 7734893--7735053 Score: 165
Period size: 46 Copynumber: 3.5 Consensus size: 47
7734883 AGTATAAGAC
* * *
7734893 CATGTCTGGGACATGGCATCGGCATTGAGAC--AAGTGCTAGTGTAATA
1 CATGTCTGGGACATGGCATCGGCCTCGAGACGTAAGT--TAGTGTAAAA
*
7734940 CATGTCTAGGACAT-GCATCGGCCTCGAGACGTAAGTTAGTGTAAAA
1 CATGTCTGGGACATGGCATCGGCCTCGAGACGTAAGTTAGTGTAAAA
* * * *
7734986 TATGTCTGGGACAT-GCATCGG-CTACGAGATGT--GTCAGTGTAAGA
1 CATGTCTGGGACATGGCATCGGCCT-CGAGACGTAAGTTAGTGTAAAA
7735030 CTATGTCTGGGACATGGCATCGGC
1 C-ATGTCTGGGACATGGCATCGGC
7735054 ACCTTACCCC
Statistics
Matches: 98, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
44 10 0.10
45 15 0.15
46 56 0.57
47 13 0.13
48 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
CATGTCTGGGACATGGCATCGGCCTCGAGACGTAAGTTAGTGTAAAA
Found at i:7739045 original size:10 final size:10
Alignment explanation
Indices: 7739030--7739055 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7739020 AATGAGGATT
7739030 TATGGCGGGC
1 TATGGCGGGC
7739040 TATGGCGGGC
1 TATGGCGGGC
7739050 TATGGC
1 TATGGC
7739056 CTCGGGCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.19, G:0.46, T:0.23
Consensus pattern (10 bp):
TATGGCGGGC
Found at i:7740987 original size:56 final size:56
Alignment explanation
Indices: 7740901--7741020 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
7740891 ACAAGGGATG
7740901 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAACGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAACGGAAAAATAAAATAAGAAGC
* *
7740957 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAACGGAAAAATAAAATAAGAAGC
7741013 ATGGGCAA
1 ATGGGCAA
7741021 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAACGGAAAAATAAAATAAGAAGC
Found at i:7742378 original size:40 final size:40
Alignment explanation
Indices: 7742147--7742371 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
7742137 TCGAATGATG
* * * *
7742147 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
7742187 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
7742227 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
7742266 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
7742306 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
7742347 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
7742372 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:7750346 original size:3 final size:3
Alignment explanation
Indices: 7750340--7750374 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
7750330 GCATCATCAT
*
7750340 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
7750375 ACATCAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.37, C:0.34, G:0.29, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:7755497 original size:18 final size:19
Alignment explanation
Indices: 7755448--7755497 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
7755438 AAAAAATATT
*
7755448 AAATTAATATAAACCTATA
1 AAATTAATAAAAACCTATA
*
7755467 AAATTAATAAAAACTTATA
1 AAATTAATAAAAACCTATA
7755486 AATATT-ATAAAA
1 AA-ATTAATAAAA
7755498 GATATTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 25 0.89
20 3 0.11
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATTAATAAAAACCTATA
Found at i:7756618 original size:29 final size:29
Alignment explanation
Indices: 7756564--7756626 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
7756554 CCTAATGAGT
*
7756564 AATTTTATACATTAATTTTGATTTTG-TGC
1 AATTTTATACATAAATTTTGATTTTGAT-C
7756593 AATTTTATACATGAAATTTTGA-TTTGATC
1 AATTTTATACAT-AAATTTTGATTTTGATC
7756622 AATTT
1 AATTT
7756627 CTCACAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 22 0.71
30 9 0.29
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (29 bp):
AATTTTATACATAAATTTTGATTTTGATC
Found at i:7756921 original size:17 final size:17
Alignment explanation
Indices: 7756876--7756922 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
7756866 GTATAATTTT
* *
7756876 AAATTTATTTATTTTAA
1 AAATATATTAATTTTAA
*
7756893 AAATA-ATAAATTTTAA
1 AAATATATTAATTTTAA
7756909 AAATATATTAATTT
1 AAATATATTAATTT
7756923 ATAGTAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATATATTAATTTTAA
Found at i:7757341 original size:13 final size:15
Alignment explanation
Indices: 7757308--7757349 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
7757298 TTAAAATTTT
7757308 TATTT-TATTTTTAA
1 TATTTATATTTTTAA
7757322 TATTTATATTTTTAA
1 TATTTATATTTTTAA
*
7757337 -A-TTATAATTTTAA
1 TATTTATATTTTTAA
7757350 GAAGTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 6 0.23
15 9 0.35
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTTATATTTTTAA
Found at i:7757341 original size:26 final size:28
Alignment explanation
Indices: 7757273--7757341 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 28
7757263 TTTTTTAAAT
*
7757273 TATTTTTAAATAATTTAATTAAATATTAA
1 TATTTTTAAATTATTT-ATTAAATATTAA
* ** *
7757302 AATTTTTATTTTATTT-TT-AATATTTA
1 TATTTTTAAATTATTTATTAAATATTAA
7757328 TATTTTTAAATTAT
1 TATTTTTAAATTAT
7757342 AATTTTAAGA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
26 18 0.56
27 2 0.06
29 12 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (28 bp):
TATTTTTAAATTATTTATTAAATATTAA
Found at i:7757468 original size:19 final size:19
Alignment explanation
Indices: 7757444--7757493 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
7757434 AAAAAACTTT
7757444 TTTAATTTTAAATTCAAAA
1 TTTAATTTTAAATTCAAAA
7757463 TTTAATTTTAAATTCAAAA
1 TTTAATTTTAAATTCAAAA
* *
7757482 TATATTTTTAAA
1 TTTAATTTTAAA
7757494 ATTAAGATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTAATTTTAAATTCAAAA
Found at i:7759012 original size:6 final size:6
Alignment explanation
Indices: 7759001--7759028 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7758991 GCATAAATAG
7759001 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
7759029 GACAGGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:7760490 original size:20 final size:21
Alignment explanation
Indices: 7760443--7760490 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
7760433 CCCTTATTTG
*
7760443 TTATT-TTAGTTATTTTATCA
1 TTATTATTAGTTATTTAATCA
*
7760463 TTA-AATTAGTTATTTAAT-A
1 TTATTATTAGTTATTTAATCA
7760482 TTATTATTA
1 TTATTATTA
7760491 CTATTATTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAGTTATTTAATCA
Found at i:7760497 original size:12 final size:12
Alignment explanation
Indices: 7760480--7760513 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7760470 AGTTATTTAA
7760480 TATTATTATTAC
1 TATTATTATTAC
*
7760492 TATTATTACTAC
1 TATTATTATTAC
*
7760504 AATTATTATT
1 TATTATTATT
7760514 GTTATCCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:7760626 original size:16 final size:14
Alignment explanation
Indices: 7760597--7760644 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
7760587 ATTTCATTAT
*
7760597 TTTTATATTCTATAA
1 TTTTATATACTAT-A
7760612 TTTTATATACTTATA
1 TTTTATATAC-TATA
7760627 TATTTATATAC-ATA
1 T-TTTATATACTATA
7760641 TTTT
1 TTTT
7760645 CATTTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 3 0.10
14 4 0.13
15 11 0.37
16 12 0.40
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTATATACTATA
Found at i:7771606 original size:1 final size:1
Alignment explanation
Indices: 7771600--7771632 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
7771590 TACTTTGCCT
7771600 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7771633 GGGGAGAGGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7772796 original size:124 final size:125
Alignment explanation
Indices: 7772529--7772943 Score: 633
Period size: 124 Copynumber: 3.3 Consensus size: 125
7772519 GTCATTAAAG
7772529 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGTAGCAGATCTATCTTCCTATATTGG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG-AGTAGCAGATCTATCTTCCTATATTGG
7772594 TAGGAAGTAGATCGAGAGCAGATCTTGTCTTCCCATATGGTGGCGAAGTAGATCGCAGAAA
65 TAGGAAGTAGATCGAGAGCAGATCTTGTCTTCCCATATGGTGGCGAAGTAGATCGCAGAAA
7772655 CA-ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAGTAGCAGATCTATCTTCCTATATTGGT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAGTAGCAGATCTATCTTCCTATATTGGT
7772719 AGGAAGT-GATCGAGAGCAGATCTTGTCTTCCCATATGGTGGCGAAGTAGATCGCAGAAA
66 AGGAAGTAGATCGAGAGCAGATCTTGTCTTCCCATATGGTGGCGAAGTAGATCGCAGAAA
* * *
7772778 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGGTCAAAGATATCAGATCCTATCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-GAG-TAGCAGAT-CTATCTTCCTATATT
* * * *
7772843 GGTAGGAAGTGGACCGACGATGCAGATCTTGTCTT-CCATAT--TGGCGAAGTAGATCGGAAAAA
63 GGTAGGAAGTAGATCGA-GA-GCAGATCTTGTCTTCCCATATGGTGGCGAAGTAGATCGCAGAAA
*** *
7772905 CAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGA
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGA
7772944 AGAAAGCAGA
Statistics
Matches: 269, Mismatches: 12, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
123 54 0.20
124 67 0.25
125 36 0.13
126 9 0.03
127 65 0.24
128 16 0.06
129 8 0.03
130 14 0.05
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (125 bp):
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAGTAGCAGATCTATCTTCCTATATTGGT
AGGAAGTAGATCGAGAGCAGATCTTGTCTTCCCATATGGTGGCGAAGTAGATCGCAGAAA
Found at i:7772835 original size:44 final size:45
Alignment explanation
Indices: 7772527--7773219 Score: 531
Period size: 44 Copynumber: 16.2 Consensus size: 45
7772517 AAGTCATTAA
* *
7772527 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG-T
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* *
7772570 AGCAGATC-TATCTTCCTATATTGGTAG-GAAGTAGATCG-AG--
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
7772610 AGCAGATCTTGTCTTCCCATA-TGGTGGCGAAGTAGATCGCAGA-
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * *
7772653 AACA-ATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG-AG-T
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* *
7772694 AGCAGATC-TATCTTCCTATATTGGTAG-GAAGT-GATCG-AG--
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
7772733 AGCAGATCTTGTCTTCCCATA-TGGTGGCGAAGTAGATCGCAGA-
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * *
7772776 AACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGGTCAAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * *
7772820 ATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGACCGACGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
7772864 -GCAGATCTTGTCTTCC-ATATTGG-C--GAAGTAGATCGGAA-A-
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC-GAAGAT
* * * *
7772903 AACAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
7772948 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGGTCAAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * *
7772992 ATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGACCGACGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
7773036 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * *
7773080 AGCAGATCTTGTCTTCATGTATTGG-CATGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * *
7773124 ATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGACCGACGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * * *
7773168 -GCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
7773212 AGCAGATC
1 AGCAGATC
7773220 GACGATGGCG
Statistics
Matches: 509, Mismatches: 110, Indels: 60
0.75 0.16 0.09
Matches are distributed among these distances:
39 13 0.03
40 59 0.12
41 60 0.12
42 64 0.13
43 102 0.20
44 161 0.32
45 50 0.10
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
Found at i:7772969 original size:172 final size:175
Alignment explanation
Indices: 7772733--7773131 Score: 641
Period size: 172 Copynumber: 2.3 Consensus size: 175
7772723 AGTGATCGAG
* *
7772733 AGCAGATCTTGTCTTCCCATA-TGGTGGCGAAGTAGATCGCAGAAACAGATCTTGTCTTCATGTA
1 AGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAACAGATCTTGTCTTCATGTA
7772797 TTGGCGTGAAGTAGGTCAAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACG
66 TTGGCGTGAAGTAGGTCAAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACG
7772862 ATGCAGATCTTGTCTT-CCATA-T-TGGCGAAGTAGATCGGAA-AA
131 ATGCAGATCTTGTCTTCCCATATTGTGGCGAAGTAGATC-GAAGAA
7772904 A-CAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
1 AGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAA-CAGATCTTGTCTTCATGT
7772968 ATTGGCGTGAAGTAGGTCAAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGAC
65 ATTGGCGTGAAGTAGGTCAAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGAC
7773033 GATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
130 GATGCAGATCTTGTCTTCCCATATT-GTGGCGAAGTAGATCGAAGAA
*** ** *
7773080 AGCAGATCTTGTCTTCATGTATTGG-CATGAAGTAGATCGAAGATATCAGATC
1 AGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGA-AACAGATC
7773132 CTATCTTCCT
Statistics
Matches: 211, Mismatches: 8, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
170 19 0.09
171 23 0.11
172 100 0.47
173 5 0.02
174 1 0.00
175 3 0.01
176 39 0.18
177 21 0.10
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (175 bp):
AGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAACAGATCTTGTCTTCATGTA
TTGGCGTGAAGTAGGTCAAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACG
ATGCAGATCTTGTCTTCCCATATTGTGGCGAAGTAGATCGAAGAA
Found at i:7774894 original size:20 final size:21
Alignment explanation
Indices: 7774847--7774894 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
7774837 CCCTTATTTG
*
7774847 TTATT-TTAGTTATTTTATCA
1 TTATTATTAGTTATTTAATCA
*
7774867 TTA-AATTAGTTATTTAAT-A
1 TTATTATTAGTTATTTAATCA
7774886 TTATTATTA
1 TTATTATTA
7774895 CTATTATTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAGTTATTTAATCA
Found at i:7774901 original size:12 final size:12
Alignment explanation
Indices: 7774884--7774917 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7774874 AGTTATTTAA
7774884 TATTATTATTAC
1 TATTATTATTAC
*
7774896 TATTATTACTAC
1 TATTATTATTAC
*
7774908 AATTATTATT
1 TATTATTATT
7774918 GTTATCCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:7775030 original size:16 final size:14
Alignment explanation
Indices: 7775001--7775048 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
7774991 ATTTCATTAT
*
7775001 TTTTATATTCTATAA
1 TTTTATATACTAT-A
7775016 TTTTATATACTTATA
1 TTTTATATAC-TATA
7775031 TATTTATATAC-ATA
1 T-TTTATATACTATA
7775045 TTTT
1 TTTT
7775049 CATTTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 3 0.10
14 4 0.13
15 11 0.37
16 12 0.40
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTATATACTATA
Found at i:7782693 original size:43 final size:44
Alignment explanation
Indices: 7782600--7782712 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 44
7782590 GAAATCCTAT
* * * *
7782600 AGATGGAATCT-GCTTTCGACTGTGGATACACAACAAGTACCTGC
1 AGATGGAATCTACCTTT-GGCTATGGATACACAACAAGTACCCGC
*
7782644 ATATGGAATCTACCTTTGGCTATGGAT-CACAACAA-TACCCCGC
1 AGATGGAATCTACCTTTGGCTATGGATACACAACAAGTA-CCCGC
* * *
7782687 AGATGGAATTTACCTCTAGCTATGGA
1 AGATGGAATCTACCTTTGGCTATGGA
7782713 ATAAAATTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 2 0.03
43 34 0.59
44 18 0.31
45 4 0.07
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (44 bp):
AGATGGAATCTACCTTTGGCTATGGATACACAACAAGTACCCGC
Found at i:7794034 original size:40 final size:40
Alignment explanation
Indices: 7793986--7794078 Score: 161
Period size: 40 Copynumber: 2.3 Consensus size: 40
7793976 GGCGTTTCAA
7793986 TGAAAAACGCCGCTAAAGAT-AGAGCATTAGCGGCGCTTTT
1 TGAAAAACGCCGCTAAAGATCA-AGCATTAGCGGCGCTTTT
7794026 TGAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTTT
1 TGAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTTT
*
7794066 TAAAAAACGCCGC
1 TGAAAAACGCCGC
7794079 AAAAAATTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 50 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (40 bp):
TGAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTTT
Found at i:7794583 original size:7 final size:7
Alignment explanation
Indices: 7794470--7794586 Score: 58
Period size: 7 Copynumber: 16.4 Consensus size: 7
7794460 TTAATTATCA
*
7794470 TTATAGT
1 TTATGGT
*
7794477 TTAGGGT
1 TTATGGT
* *
7794484 TTACGAT
1 TTATGGT
*
7794491 TTAGGGT
1 TTATGGT
*
7794498 ATATGGT
1 TTATGGT
*
7794505 TAATGGT
1 TTATGGT
*
7794512 TTAAGGT
1 TTATGGT
7794519 TTATGAGT
1 TTATG-GT
7794527 TACTAT--T
1 T--TATGGT
**
7794534 TTAAAGT
1 TTATGGT
*
7794541 TTATGGA
1 TTATGGT
7794548 TTATAGGT
1 TTAT-GGT
* *
7794556 TTAGGGA
1 TTATGGT
*
7794563 TTATGAT
1 TTATGGT
7794570 TTATGGT
1 TTATGGT
7794577 TTATGGT
1 TTATGGT
7794584 TTA
1 TTA
7794587 AGGGTTGGGG
Statistics
Matches: 80, Mismatches: 24, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
5 2 0.03
7 67 0.84
8 8 0.10
10 3 0.04
ACGTcount: A:0.26, C:0.02, G:0.25, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:7794627 original size:15 final size:15
Alignment explanation
Indices: 7794581--7794633 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
7794571 TATGGTTTAT
7794581 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
* **
7794595 GGTTTGAGCTTTAGG
1 GGTTTAAGGGTTAGG
*
7794610 GGTTTAAGGGTTATG
1 GGTTTAAGGGTTAGG
*
7794625 GGTTCAAGG
1 GGTTTAAGG
7794634 TTAATGGTTT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
14 9 0.30
15 21 0.70
ACGTcount: A:0.17, C:0.04, G:0.43, T:0.36
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:7794798 original size:14 final size:14
Alignment explanation
Indices: 7794779--7794818 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7794769 TATCATTATA
7794779 GTTTAGGGTTTACG
1 GTTTAGGGTTTACG
* *
7794793 GTTTAGGGTATATG
1 GTTTAGGGTTTACG
*
7794807 GTTAAGGGTTTA
1 GTTTAGGGTTTA
7794819 ATGTTTATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.20, C:0.03, G:0.35, T:0.42
Consensus pattern (14 bp):
GTTTAGGGTTTACG
Found at i:7795254 original size:7 final size:7
Alignment explanation
Indices: 7795242--7795320 Score: 59
Period size: 7 Copynumber: 11.0 Consensus size: 7
7795232 AATATTCAAA
7795242 AAAATTT
1 AAAATTT
7795249 AAAATTT
1 AAAATTT
7795256 AAAATTT
1 AAAATTT
**
7795263 AAAATAA
1 AAAATTT
*
7795270 AAAATTA
1 AAAATTT
*
7795277 AAAATTA
1 AAAATTT
* *
7795284 AAAAATA
1 AAAATTT
*
7795291 AAGAACTT
1 AA-AATTT
7795299 AAAATTTT
1 AAAA-TTT
*
7795307 AATATTT
1 AAAATTT
*
7795314 AATATTT
1 AAAATTT
7795321 TATTCCATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
7 52 0.84
8 10 0.16
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (7 bp):
AAAATTT
Found at i:7799408 original size:21 final size:20
Alignment explanation
Indices: 7799382--7799421 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
7799372 CCCTTCAGTT
7799382 GTATCGTGATATCCACTTTGG
1 GTATCGTGATATCCA-TTTGG
7799403 GTATCGTGATATCCATTTG
1 GTATCGTGATATCCATTTG
7799422 CCAAGAAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (20 bp):
GTATCGTGATATCCATTTGG
Found at i:7799886 original size:15 final size:16
Alignment explanation
Indices: 7799851--7799886 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7799841 CAACACAACT
7799851 TCAAAAGTTCAGAAGA
1 TCAAAAGTTCAGAAGA
*
7799867 TCAAAAGTTTAGAA-A
1 TCAAAAGTTCAGAAGA
7799882 TCAAA
1 TCAAA
7799887 GCTTGAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.53, C:0.11, G:0.14, T:0.22
Consensus pattern (16 bp):
TCAAAAGTTCAGAAGA
Found at i:7800270 original size:53 final size:53
Alignment explanation
Indices: 7800212--7800317 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
7800202 TGCATGATAC
7800212 CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
1 CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
7800265 CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
1 CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
7800318 TCATACAATA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.30
Consensus pattern (53 bp):
CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
Found at i:7801249 original size:28 final size:28
Alignment explanation
Indices: 7801189--7801241 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
7801179 TAAATTTTAG
7801189 AAAAATTATTAAATTTTAATAAAAATAT
1 AAAAATTATTAAATTTTAATAAAAATAT
*
7801217 AAAAATTA-TAAATTTTTATAAAAAT
1 AAAAATTATTAAATTTTAATAAAAAT
7801242 CGTAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
AAAAATTATTAAATTTTAATAAAAATAT
Found at i:7801254 original size:27 final size:27
Alignment explanation
Indices: 7801189--7801255 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
7801179 TAAATTTTAG
*
7801189 AAAAATTATTAAATTTTAATAAAAATAT
1 AAAAA-TAATAAATTTTAATAAAAATAT
* * *
7801217 AAAAATTATAAATTTTTATAAAAATCGT
1 AAAAATAATAAATTTTAATAAAAAT-AT
7801245 AAAAA-AATAAA
1 AAAAATAATAAA
7801256 AATTGTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 22 0.67
28 11 0.33
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (27 bp):
AAAAATAATAAATTTTAATAAAAATAT
Found at i:7801289 original size:37 final size:36
Alignment explanation
Indices: 7801207--7801287 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
7801197 TTAAATTTTA
* *
7801207 ATAAAAATATAAAAATTATAAATTTTTATAAAAATC
1 ATAAAAAAATAAAAATTATAAAATTTTATAAAAATC
* * *
7801243 GTAAAAAAATAAAAATTGTAAAATTTTATTAAAATC
1 ATAAAAAAATAAAAATTATAAAATTTTATAAAAATC
7801279 ATAAAAAAA
1 ATAAAAAAA
7801288 ATTACCAACC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (36 bp):
ATAAAAAAATAAAAATTATAAAATTTTATAAAAATC
Found at i:7801519 original size:28 final size:28
Alignment explanation
Indices: 7801470--7801587 Score: 95
Period size: 28 Copynumber: 4.3 Consensus size: 28
7801460 TACATTTTGA
* * **
7801470 ATAATTTTCTTACGACTTTATAAAATTTT
1 ATAATTTT-TTACTATTTTATAAAAAATT
**
7801499 ATAATTATTTTA-TATTTTAT---ATTTT
1 ATAATT-TTTTACTATTTTATAAAAAATT
*
7801524 AATAATTTTTTACGATTTT-TAAAAAAATT
1 -ATAATTTTTTACTATTTTAT-AAAAAATT
7801553 ATAATTTTTTACTATTTTA-AAAAAATT
1 ATAATTTTTTACTATTTTATAAAAAATT
7801580 ATAATTTT
1 ATAATTTT
7801588 ATATTTTTTA
Statistics
Matches: 75, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
25 11 0.15
26 11 0.15
27 16 0.21
28 23 0.31
29 12 0.16
30 2 0.03
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (28 bp):
ATAATTTTTTACTATTTTATAAAAAATT
Found at i:7801555 original size:54 final size:56
Alignment explanation
Indices: 7801458--7801571 Score: 146
Period size: 54 Copynumber: 2.1 Consensus size: 56
7801448 TTTATATTTC
**
7801458 TTTACATTTTGAATAATTTTCTTACGACTTTATAAAATTTTATAATTATTTTA-TAT
1 TTTACATTTTGAATAATTTTCTTACGACTTTATAAAAAATTATAATT-TTTTACTAT
* *
7801514 TTTATATTTT-AATAATTTT-TTACGA-TTTTTAAAAAAATTATAATTTTTTACTAT
1 TTTACATTTTGAATAATTTTCTTACGACTTTAT-AAAAAATTATAATTTTTTACTAT
7801568 TTTA
1 TTTA
7801572 AAAAAATTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
53 9 0.17
54 25 0.48
55 9 0.17
56 9 0.17
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (56 bp):
TTTACATTTTGAATAATTTTCTTACGACTTTATAAAAAATTATAATTTTTTACTAT
Found at i:7801560 original size:27 final size:27
Alignment explanation
Indices: 7801525--7801587 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
7801515 TTATATTTTA
7801525 ATAATTTTTTACGATTTTTAAAAAAATT
1 ATAATTTTTTACGA-TTTTAAAAAAATT
*
7801553 ATAATTTTTTACTATTTTAAAAAAATT
1 ATAATTTTTTACGATTTTAAAAAAATT
7801580 ATAATTTT
1 ATAATTTT
7801588 ATATTTTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 21 0.62
28 13 0.38
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (27 bp):
ATAATTTTTTACGATTTTAAAAAAATT
Found at i:7801697 original size:9 final size:9
Alignment explanation
Indices: 7801578--7801700 Score: 54
Period size: 9 Copynumber: 13.3 Consensus size: 9
7801568 TTTAAAAAAA
7801578 TTATAA-TT
1 TTATAATTT
*
7801586 TTATATTTT
1 TTATAATTT
*
7801595 TTACAATTT
1 TTATAATTT
*
7801604 TTACAATTT
1 TTATAATTT
* *
7801613 TTCTTATTT
1 TTATAATTT
*
7801622 TT-TAATAT
1 TTATAATTT
7801630 TTA-AATTTTT
1 TTATAA--TTT
*
7801640 TTATTAAAATT
1 TTA-T-AATTT
* *
7801651 TAATAATAT
1 TTATAATTT
*
7801660 TTATAACTT
1 TTATAATTT
*
7801669 TTATTGATTT
1 TTA-TAATTT
* *
7801679 TATTTTATTT
1 T-TATAATTT
7801689 TTATAATTT
1 TTATAATTT
7801698 TTA
1 TTA
7801701 ATAAAAGAAG
Statistics
Matches: 84, Mismatches: 22, Indels: 17
0.68 0.18 0.14
Matches are distributed among these distances:
8 13 0.15
9 47 0.56
10 17 0.20
11 5 0.06
13 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (9 bp):
TTATAATTT
Found at i:7803811 original size:22 final size:22
Alignment explanation
Indices: 7803783--7803826 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7803773 AGATTGCCAA
7803783 GTTATACGTTTTACAAGGTTCT
1 GTTATACGTTTTACAAGGTTCT
* *
7803805 GTTATACGTTTTGCAGGGTTCT
1 GTTATACGTTTTACAAGGTTCT
7803827 ACTGTTACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.18, C:0.14, G:0.23, T:0.45
Consensus pattern (22 bp):
GTTATACGTTTTACAAGGTTCT
Found at i:7806115 original size:27 final size:27
Alignment explanation
Indices: 7806067--7806225 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
7806057 GCGAGGCTGC
* *
7806067 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
7806094 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
7806120 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7806147 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
7806174 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7806201 CAAATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
7806226 GACGCTTTCT
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:7806226 original size:54 final size:54
Alignment explanation
Indices: 7806085--7806228 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
7806075 GTGACGAAGT
* *
7806085 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
7806139 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
7806193 CACCAGATCAAATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
7806229 GCTTTCTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:7810887 original size:16 final size:16
Alignment explanation
Indices: 7810866--7810896 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7810856 CATTTTATTT
*
7810866 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
7810882 ATATTAAGATAATTA
1 ATATTAAGATAATTA
7810897 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:7810925 original size:28 final size:27
Alignment explanation
Indices: 7810862--7810926 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
7810852 ACTCCATTTT
7810862 ATTTATATTAGGATAATTAAATATTAAG
1 ATTT-TATTAGGATAATTAAATATTAAG
* * * *
7810890 ATAATTATTAGGATTATTTAAATTTTAGG
1 AT-TTTATTAGGA-TAATTAAATATTAAG
7810919 ATTTTATT
1 ATTTTATT
7810927 TTAATTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (27 bp):
ATTTTATTAGGATAATTAAATATTAAG
Found at i:7811869 original size:12 final size:12
Alignment explanation
Indices: 7811852--7811884 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7811842 CTACTTACCA
7811852 TTTACTATTATC
1 TTTACTATTATC
*
7811864 TTTACTATTATT
1 TTTACTATTATC
7811876 TTTACTATT
1 TTTACTATT
7811885 TTACAGGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTACTATTATC
Found at i:7813989 original size:12 final size:12
Alignment explanation
Indices: 7813972--7814000 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
7813962 TTACTTTTGG
7813972 TATTTTTCTT-A
1 TATTTTTCTTAA
7813983 TATTTTTCTTAA
1 TATTTTTCTTAA
7813995 TATTTT
1 TATTTT
7814001 AAATATTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (12 bp):
TATTTTTCTTAA
Found at i:7825815 original size:30 final size:30
Alignment explanation
Indices: 7825779--7825840 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
7825769 AGTTAAAGTA
7825779 TTTAAAATGTTAAAATATGCTATAAGTTCT
1 TTTAAAATGTTAAAATATGCTATAAGTTCT
7825809 TTTAAAATGTTAAAATATGCTATAAGTTCT
1 TTTAAAATGTTAAAATATGCTATAAGTTCT
7825839 TT
1 TT
7825841 GTTATAAGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (30 bp):
TTTAAAATGTTAAAATATGCTATAAGTTCT
Found at i:7827005 original size:18 final size:18
Alignment explanation
Indices: 7826974--7827023 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
7826964 TAGTAAAAAA
*
7826974 TTATAAAAATTAATTAAAT
1 TTATAATAA-TAATTAAAT
7826993 TTATAATAATAATTAAAT
1 TTATAATAATAATTAAAT
*
7827011 ATATAATTAATAA
1 TTATAA-TAATAA
7827024 ATACAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTATAATAATAATTAAAT
Found at i:7827016 original size:15 final size:17
Alignment explanation
Indices: 7826975--7827026 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 17
7826965 AGTAAAAAAT
*
7826975 TATAAAAATTAATTAAA
1 TATAATAATTAATTAAA
7826992 TTTATAATAA-TAATTAAA
1 --TATAATAATTAATTAAA
7827010 TAT-ATAATTAA-TAAA
1 TATAATAATTAATTAAA
7827025 TA
1 TA
7827027 CAATTAATCC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 10 0.32
16 6 0.19
18 8 0.26
19 7 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TATAATAATTAATTAAA
Found at i:7830590 original size:24 final size:24
Alignment explanation
Indices: 7830563--7830612 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7830553 ATAAACTTTT
7830563 TTTCAAAGATAAAAGGATTTTAAC
1 TTTCAAAGATAAAAGGATTTTAAC
7830587 TTTCAAAGATAAAAGGATTTTAAC
1 TTTCAAAGATAAAAGGATTTTAAC
7830611 TT
1 TT
7830613 ACTTCCTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (24 bp):
TTTCAAAGATAAAAGGATTTTAAC
Found at i:7835794 original size:19 final size:19
Alignment explanation
Indices: 7835770--7835808 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7835760 GAGGGCATGT
7835770 TTGGTTAGAGTGAATGGAA
1 TTGGTTAGAGTGAATGGAA
7835789 TTGGTTAGAGTGAATGGAA
1 TTGGTTAGAGTGAATGGAA
7835808 T
1 T
7835809 AGAGATGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (19 bp):
TTGGTTAGAGTGAATGGAA
Found at i:7836122 original size:38 final size:37
Alignment explanation
Indices: 7836051--7836122 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 37
7836041 AATAACAAAT
* *
7836051 AATTTAATCATATTTTAACATAATTATTATTAAATAC
1 AATTTAATAACATTTTAACATAATTATTATTAAATAC
* *
7836088 AATTTAATAACATTCTTAATATAATTATTTTTAAA
1 AATTTAATAACATT-TTAACATAATTATTATTAAA
7836123 ATATGAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 12 0.40
38 18 0.60
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (37 bp):
AATTTAATAACATTTTAACATAATTATTATTAAATAC
Found at i:7836147 original size:39 final size:38
Alignment explanation
Indices: 7836070--7836149 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 38
7836060 ATATTTTAAC
* * *
7836070 ATAATTATTATTAAATACAATTTAATAACATTCTTAAT
1 ATAATTATTATTAAATACAATTTAATAAAAATCATAAT
* *
7836108 ATAATTATTTTTAAAATATGAA-TTAATAAAAATCATAAT
1 ATAATTATTATT-AAATA-CAATTTAATAAAAATCATAAT
7836147 ATA
1 ATA
7836150 TAATATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
38 11 0.31
39 22 0.63
40 2 0.06
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.42
Consensus pattern (38 bp):
ATAATTATTATTAAATACAATTTAATAAAAATCATAAT
Found at i:7838537 original size:11 final size:12
Alignment explanation
Indices: 7838514--7838542 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7838504 TTTTTAATTC
7838514 TATGAGAATTTT
1 TATGAGAATTTT
7838526 TATGAGAATTTT
1 TATGAGAATTTT
7838538 TATGA
1 TATGA
7838543 AAGTATTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.48
Consensus pattern (12 bp):
TATGAGAATTTT
Found at i:7841465 original size:23 final size:21
Alignment explanation
Indices: 7841416--7841465 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
7841406 ACGTCGAATA
*
7841416 AATTATTTTATTTTTCAATAT
1 AATTATTTTATTTTTCAAAAT
*
7841437 AA--ATTTATTTTTTTCTAAAAT
1 AATTATTT-TATTTTTC-AAAAT
7841458 AATTATTT
1 AATTATTT
7841466 GTTTGGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
19 4 0.17
20 7 0.30
21 8 0.35
23 4 0.17
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (21 bp):
AATTATTTTATTTTTCAAAAT
Found at i:7841644 original size:89 final size:88
Alignment explanation
Indices: 7841521--7841744 Score: 286
Period size: 89 Copynumber: 2.5 Consensus size: 88
7841511 TTAGAAAATT
* * * * *
7841521 AATAATACGCAACAAATTAAATTTACAAACACAAGAAAATACAAACATTCTAGAATATTAATACA
1 AATAATAC-AAACAAATTAAATTTACAGATACAAGAAAATACAAACATTCTAAAAAATTAATACA
*
7841586 TAAAAATATAAAATTCGAACAACA
65 CAAAAATATAAAATTCGAACAACA
* * *
7841610 AATAATACAAACTAAATTAAATTTATAGATACAAGAAAATAAAAACTTTCTAAAAAATTAATACA
1 AATAATACAAAC-AAATTAAATTTACAGATACAAGAAAATACAAACATTCTAAAAAATTAATACA
*
7841675 CGAAAATATAAAATTCGAACAACA
65 CAAAAATATAAAATTCGAACAACA
* ** *
7841699 AATAATACAGACAAAATTTGATTTACAGATACAAAAATAATACAAA
1 AATAATACAAAC-AAATTAAATTTACAGATACAAGAA-AATACAAA
7841745 AATTTTGAAT
Statistics
Matches: 116, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
88 3 0.03
89 106 0.91
90 7 0.06
ACGTcount: A:0.59, C:0.12, G:0.05, T:0.24
Consensus pattern (88 bp):
AATAATACAAACAAATTAAATTTACAGATACAAGAAAATACAAACATTCTAAAAAATTAATACAC
AAAAATATAAAATTCGAACAACA
Found at i:7846240 original size:74 final size:74
Alignment explanation
Indices: 7846160--7846304 Score: 236
Period size: 74 Copynumber: 2.0 Consensus size: 74
7846150 ACTAATTTGT
* * *
7846160 GTTCATAAATAATTTGTATCTATGTTCATAAATAAATATAAAATTATGTTAATATAAATAAAAAA
1 GTTCATAAATAATTTGTATCTACGTTCATAAATAAATATAAAATTATATTAAGATAAATAAAAAA
*
7846225 TTAATTTAC
66 ATAATTTAC
* *
7846234 GTTCATAAATAATTTGTATCTACGTTCCTAAATAAATATATAATTATATTAAGATAAATAAAAAA
1 GTTCATAAATAATTTGTATCTACGTTCATAAATAAATATAAAATTATATTAAGATAAATAAAAAA
7846299 ATAATT
66 ATAATT
7846305 GTAATATATT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (74 bp):
GTTCATAAATAATTTGTATCTACGTTCATAAATAAATATAAAATTATATTAAGATAAATAAAAAA
ATAATTTAC
Found at i:7852139 original size:15 final size:15
Alignment explanation
Indices: 7852119--7852156 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7852109 CACATCAACA
7852119 AAAATATTTTTTTTT
1 AAAATATTTTTTTTT
*
7852134 AAAATA-ATTTTTTT
1 AAAATATTTTTTTTT
7852148 AAAAT-TTTT
1 AAAATATTTT
7852157 AAAAAACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
AAAATATTTTTTTTT
Found at i:7852852 original size:56 final size:56
Alignment explanation
Indices: 7852783--7852903 Score: 152
Period size: 56 Copynumber: 2.1 Consensus size: 56
7852773 AAGAAAAAAA
* * * *
7852783 ATAAATTTATGTAGCATATACATATAAATTTTTTTGAATGTTGATTTATCATTTAT
1 ATAAATTTATGTAGCAGACACATATAAATTGTTTTGAATGTTCATTTATCATTTAT
* * * * *
7852839 ATAAATTTGTGTAGTAGACATATATAAATTGTTTTGAATTTTCATTTATCATTTTT
1 ATAAATTTATGTAGCAGACACATATAAATTGTTTTGAATGTTCATTTATCATTTAT
7852895 ATATAATTT
1 ATA-AATTT
7852904 TTAAAAATTA
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
56 50 0.91
57 5 0.09
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.51
Consensus pattern (56 bp):
ATAAATTTATGTAGCAGACACATATAAATTGTTTTGAATGTTCATTTATCATTTAT
Found at i:7858779 original size:41 final size:41
Alignment explanation
Indices: 7858678--7858837 Score: 178
Period size: 41 Copynumber: 3.9 Consensus size: 41
7858668 TGTGTGATTC
* * * **
7858678 GTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGAGAAAAT
1 GTGTAAGACCATGTCTGGGACATTGACATCGTA-T-ATAATTT
7858721 GTGTAAGACCATGTCTGGGACATTGACATCGTATATAATTT
1 GTGTAAGACCATGTCTGGGACATTGACATCGTATATAATTT
* * * *
7858762 GTGTAAGACCCTATCTGGGACATTGATATCGTATATAATTC
1 GTGTAAGACCATGTCTGGGACATTGACATCGTATATAATTT
* * * *
7858803 ATGTAAGACCCTGTCTGGGACAGTGGCATCG-ATAT
1 GTGTAAGACCATGTCTGGGACATTGACATCGTATAT
7858838 GTGATAACAT
Statistics
Matches: 103, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
40 4 0.04
41 67 0.65
42 1 0.01
43 31 0.30
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCATGTCTGGGACATTGACATCGTATATAATTT
Found at i:7858855 original size:43 final size:41
Alignment explanation
Indices: 7858679--7858857 Score: 160
Period size: 41 Copynumber: 4.3 Consensus size: 41
7858669 GTGTGATTCG
* * * * **
7858679 TGTAAGACCATGTCTGGGACATTGGCATCGAAGTGAGAAAATG
1 TGTAAGACCATGTCTGGGACATTGACATCGTA-T-ATAATACA
***
7858722 TGTAAGACCATGTCTGGGACATTGACATCGTATATAATTTG
1 TGTAAGACCATGTCTGGGACATTGACATCGTATATAATACA
* * * *
7858763 TGTAAGACCCTATCTGGGACATTGATATCGTATATAATTCA
1 TGTAAGACCATGTCTGGGACATTGACATCGTATATAATACA
* * * * *
7858804 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACATTGACATCG-TATATAAT-ACA
7858847 TGTAAGACCAT
1 TGTAAGACCAT
7858858 ATCCGGGATA
Statistics
Matches: 116, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
41 67 0.58
42 7 0.06
43 42 0.36
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATTGACATCGTATATAATACA
Found at i:7864857 original size:17 final size:18
Alignment explanation
Indices: 7864831--7864864 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7864821 GTTTATTCAG
*
7864831 GATAATTACATG-AAATT
1 GATAAGTACATGTAAATT
7864848 GATAAGTACATGTAAAT
1 GATAAGTACATGTAAAT
7864865 GTATGTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (18 bp):
GATAAGTACATGTAAATT
Found at i:7881425 original size:6 final size:6
Alignment explanation
Indices: 7881416--7881492 Score: 154
Period size: 6 Copynumber: 12.8 Consensus size: 6
7881406 TAAGATTGAG
7881416 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
7881464 ATACAT ATACAT ATACAT ATACAT ATACA
1 ATACAT ATACAT ATACAT ATACAT ATACA
7881493 CTTCTTTTCA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 71 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (6 bp):
ATACAT
Found at i:7882529 original size:29 final size:29
Alignment explanation
Indices: 7882474--7882529 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
7882464 TATTTTCAAA
* * *
7882474 ATTATTTATGAAAATTGGTTAATTTTCTG
1 ATTATTTATGAAAAATGGCTAAATTTCTG
*
7882503 ATTATTTATTAAAAATGGCTAAATTTC
1 ATTATTTATGAAAAATGGCTAAATTTC
7882530 GAGAAAATGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (29 bp):
ATTATTTATGAAAAATGGCTAAATTTCTG
Found at i:7882732 original size:12 final size:11
Alignment explanation
Indices: 7882696--7882735 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
7882686 CACAAAAGTC
7882696 CTCTCATAA-TT
1 CTCTCA-AATTT
7882707 CTCTCAAATTT
1 CTCTCAAATTT
7882718 CTCTCAAATTT
1 CTCTCAAATTT
7882729 -TCTCAAA
1 CTCTCAAA
7882736 GTTCCTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (11 bp):
CTCTCAAATTT
Found at i:7882788 original size:14 final size:14
Alignment explanation
Indices: 7882771--7882800 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7882761 CTCTGTTTAA
*
7882771 AATTTTTTTGAATT
1 AATTTTTTTAAATT
7882785 AATTTTTTTAAATT
1 AATTTTTTTAAATT
7882799 AA
1 AA
7882801 AAAATATTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (14 bp):
AATTTTTTTAAATT
Found at i:7882957 original size:47 final size:48
Alignment explanation
Indices: 7882896--7882999 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 48
7882886 AGTGGTAATT
7882896 TTAATTTTTCAATACTATTTAATATTTTTTT-ATTTACACAATTTTAA
1 TTAATTTTTCAATACTATTTAATATTTTTTTCATTTACACAATTTTAA
**
7882943 TTAATTTTTCAATACTATTTAATATTTTTTTCATTTATGCAATTTTAA
1 TTAATTTTTCAATACTATTTAATATTTTTTTCATTTACACAATTTTAA
7882991 TTAATTTTT
1 TTAATTTTT
7883000 ATTTTATATT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
47 31 0.57
48 23 0.43
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.60
Consensus pattern (48 bp):
TTAATTTTTCAATACTATTTAATATTTTTTTCATTTACACAATTTTAA
Found at i:7882972 original size:22 final size:22
Alignment explanation
Indices: 7882900--7882975 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
7882890 GTAATTTTAA
7882900 TTTTTCAATACTATTTAATATT
1 TTTTTCAATACTATTTAATATT
* * *
7882922 TTTTT-ATTTACACAATTTTAAT-TAA
1 TTTTTCA---ATACTA-TTTAATAT-T
7882947 TTTTTCAATACTATTTAATATT
1 TTTTTCAATACTATTTAATATT
7882969 TTTTTCA
1 TTTTTCA
7882976 TTTATGCAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
21 1 0.02
22 18 0.44
23 5 0.12
24 5 0.12
25 11 0.27
26 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTTCAATACTATTTAATATT
Found at i:7883892 original size:7 final size:7
Alignment explanation
Indices: 7883876--7883929 Score: 99
Period size: 7 Copynumber: 7.7 Consensus size: 7
7883866 TTGTCGTTTC
*
7883876 GTATTCA
1 GTATTTA
7883883 GTATTTA
1 GTATTTA
7883890 GTATTTA
1 GTATTTA
7883897 GTATTTA
1 GTATTTA
7883904 GTATTTA
1 GTATTTA
7883911 GTATTTA
1 GTATTTA
7883918 GTATTTA
1 GTATTTA
7883925 GTATT
1 GTATT
7883930 ATGTATATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.28, C:0.02, G:0.15, T:0.56
Consensus pattern (7 bp):
GTATTTA
Found at i:7884567 original size:18 final size:18
Alignment explanation
Indices: 7884544--7884605 Score: 97
Period size: 18 Copynumber: 3.4 Consensus size: 18
7884534 ATGCTAAGTG
7884544 TGTATCCTAGCCCTTATA
1 TGTATCCTAGCCCTTATA
7884562 TGTATCCTAGCCCTTATA
1 TGTATCCTAGCCCTTATA
* *
7884580 TGTATCCTAACCCTTACA
1 TGTATCCTAGCCCTTATA
*
7884598 TGTTTCCT
1 TGTATCCT
7884606 TTTCTCAGTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.21, C:0.29, G:0.10, T:0.40
Consensus pattern (18 bp):
TGTATCCTAGCCCTTATA
Found at i:7885132 original size:8 final size:9
Alignment explanation
Indices: 7885115--7885145 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7885105 TTGAATAAGG
7885115 TAATATTTT
1 TAATATTTT
7885124 TAATATTTT
1 TAATATTTT
7885133 T-ATATTTT
1 TAATATTTT
7885141 TAATA
1 TAATA
7885146 AAATATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TAATATTTT
Found at i:7887504 original size:21 final size:22
Alignment explanation
Indices: 7887462--7887504 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
7887452 TAAACGAAGT
*
7887462 ATAATATTATTTAACTACATAA
1 ATAATATTATTTAACTAAATAA
7887484 ATAAT-TTAATTT-ACTAAATAA
1 ATAATATT-ATTTAACTAAATAA
7887505 TTATATGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (22 bp):
ATAATATTATTTAACTAAATAA
Found at i:7892371 original size:25 final size:26
Alignment explanation
Indices: 7892330--7892383 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
7892320 TGGTACAAAT
7892330 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7892356 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7892381 TGA
1 TGA
7892384 ATGTTCCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 20 0.74
26 7 0.26
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7892394 original size:36 final size:37
Alignment explanation
Indices: 7892347--7892419 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
7892337 GGGTTAGGTA
*
7892347 AATGTTCCATGATAAT-GGTTAGGTAAATGTTTCATG
1 AATGTTCCATGATAATGGGTTAGGTAAATGTTCCATG
7892383 AATGTTCCATGATAATGGGTTAGGTAAATGTTCCATG
1 AATGTTCCATGATAATGGGTTAGGTAAATGTTCCATG
7892420 TTGGGAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 16 0.46
37 19 0.54
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (37 bp):
AATGTTCCATGATAATGGGTTAGGTAAATGTTCCATG
Found at i:7899427 original size:127 final size:125
Alignment explanation
Indices: 7899177--7899525 Score: 511
Period size: 127 Copynumber: 2.8 Consensus size: 125
7899167 AAATGGCCAT
* * * **
7899177 TATTGTAGTCTAAGTACTTTATTTGTGGTTGTTATAATTAAATTATAGTTCATTTTGA-TAATTT
1 TATTGTAGTCTAAGTAC-TTATTTGTGGTTGTTATGATTAAATTGTAGTTCATTTTAATTTTTTT
*
7899241 TTTGTGATAACGTGAATCAAACCTGGACCACATCTTTATATCAATATTTTAGTTAGATTAC
65 TTTGTGATAACGTGAATCAAACCTAGACCACATCTTTATATCAATATTTTAGTTAGATTAC
* *
7899302 TATTGTAGTCGAAGTATCTTATTTGTGATTGTTATGATTAAATTGTAGTTCATTTTAATTGTTTT
1 TATTGTAGTCTAAGTA-CTTATTTGTGGTTGTTATGATTAAATTGTAGTTCATTTTAATT-TTTT
** * * * *
7899367 TTTTGTGATAACGTGAATCAAATTTAGACCACATTTTTATATTAATATTTTTGTTAGATTAT
64 TTTTGTGATAACGTGAATCAAACCTAGACCACATCTTTATATCAATATTTTAGTTAGATTAC
**
7899429 TATTGTAGTCTAAGTACCTTATTTGTGGTTGTTATGACCAAATTGTAGTTCATTTTAATTTTTTT
1 TATTGTAGTCTAAGTA-CTTATTTGTGGTTGTTATGATTAAATTGTAGTTCATTTTAATTTTTTT
7899494 TTTGTGATAACGTGAATCAAACCTAGACCACA
65 TTTGTGATAACGTGAATCAAACCTAGACCACA
7899526 CATAAGGCAG
Statistics
Matches: 200, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
125 51 0.25
126 37 0.19
127 112 0.56
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (125 bp):
TATTGTAGTCTAAGTACTTATTTGTGGTTGTTATGATTAAATTGTAGTTCATTTTAATTTTTTTT
TTGTGATAACGTGAATCAAACCTAGACCACATCTTTATATCAATATTTTAGTTAGATTAC
Found at i:7901992 original size:20 final size:20
Alignment explanation
Indices: 7901961--7902008 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7901951 TAAATATTAA
7901961 AATATAAATATTTACAGAATT
1 AATAT-AATATTTACAGAATT
* *
7901982 AATATAATATTTACGGGATT
1 AATATAATATTTACAGAATT
7902002 AATATAA
1 AATATAA
7902009 AAATGTATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (20 bp):
AATATAATATTTACAGAATT
Done.