Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 270 of 316
Found at i:89394975 original size:42 final size:42
Alignment explanation
Indices: 89394908--89395067 Score: 164
Period size: 42 Copynumber: 3.8 Consensus size: 42
89394898 TTAGGGTTAC
*
89394908 TGAGA-TTACGTGTAAGACCATATCTGGGATAT-GAAGTCGATA
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGGAA-TCAATA
* *
89394950 TGAGGCTTCGTGTAAGACCATATCTGGGATATGGCATCAATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGAATCAATA
* * * *
89394992 TGAGACTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGGAATCAATA
** * * *
89395035 CAAGATTTC-AGTAAGACCATATTTGGGATATGG
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGG
89395068 CATTGGTATG
Statistics
Matches: 101, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
41 3 0.03
42 78 0.77
43 20 0.20
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGGAATCAATA
Found at i:89400359 original size:12 final size:12
Alignment explanation
Indices: 89400344--89400368 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
89400334 TTTTTTAAAT
89400344 TTAGGATTATTA
1 TTAGGATTATTA
89400356 TTAGGATTATTA
1 TTAGGATTATTA
89400368 T
1 T
89400369 AATATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TTAGGATTATTA
Found at i:89403840 original size:31 final size:31
Alignment explanation
Indices: 89403802--89403864 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
89403792 TTTGTTAATG
89403802 AGTTATTGCCTCCTATGAATAATAAACTTTT
1 AGTTATTGCCTCCTATGAATAATAAACTTTT
89403833 AGTTATTGCCTCCTATGAATAATAAACTTTT
1 AGTTATTGCCTCCTATGAATAATAAACTTTT
89403864 A
1 A
89403865 CTTTTTGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (31 bp):
AGTTATTGCCTCCTATGAATAATAAACTTTT
Found at i:89407653 original size:289 final size:288
Alignment explanation
Indices: 89407109--89407821 Score: 1088
Period size: 289 Copynumber: 2.5 Consensus size: 288
89407099 AAATCTACTT
* * * *
89407109 CTTCAATTTGTTCTCTGACAATACAGAGATGCGAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * * *
89407174 GCGAAAGCCAAATCAACTATGTTTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* *
89407239 GGATCTATTTAAGAACATCTGAGAGTCAAATCTTCTATGTCCTCGATTTGTTCCTTGTAAACACA
131 GGATCTACTTAAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
* * * *
89407304 AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAATATCTAAAGGTTAGATTTGCTATGTGTC
196 AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTAAAGGTGAGATCTGCTATGTATC
89407369 TGC-CCTCCGTCGAATATGGAGATGCCAAA
261 TGCTCC-CCGTCGAA-ATGGAGATGCCAAA
* *
89407398 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTACTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* *
89407463 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * *
89407528 GGATCTGCTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACA
131 GGATCTACTTAAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
* * *
89407593 AGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATC
196 AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTAAAGGTGAGATCTGCTATGTATC
* *
89407658 TGCTCCCCGTCGAAGTGGAGATGCCAGA
261 TGCTCCCCGTCGAAATGGAGATGCCAAA
* * * *
89407686 CTTCGATTTGTACTCTGAAAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * *
89407751 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
89407815 TGGATCT
130 TGGATCT
89407822 CCTTCAGTAT
Statistics
Matches: 385, Mismatches: 37, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
287 2 0.01
288 134 0.35
289 247 0.64
290 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (288 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTACTTAAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTAAAGGTGAGATCTGCTATGTATC
TGCTCCCCGTCGAAATGGAGATGCCAAA
Found at i:89407834 original size:205 final size:205
Alignment explanation
Indices: 89407554--89408064 Score: 851
Period size: 205 Copynumber: 2.5 Consensus size: 205
89407544 ATCTGAGAGT
* * *
89407554 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTGC
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTAC
*
89407619 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGGAGATGCCA
66 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
*
89407684 GACTTCGATTTGTACTCTGAAAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAC
131 GACTTCGATTTGTACTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAC
89407749 ACGTGAAAGC
196 ACGTGAAAGC
* * *
89407759 CAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTCC
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTAC
*
89407824 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCTA
66 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
* * *
89407889 GACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAC
131 GACTTCGATTTGTACTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAC
89407954 ACGTGAAAGC
196 ACGTGAAAGC
* * *
89407964 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATTTTGGATCTTA
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATC-TA
** *
89408029 CTTCAGTATAAACATCTGAAGGCCAAATCTGCTATG
65 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATG
89408065 CTGCGGCCTA
Statistics
Matches: 285, Mismatches: 20, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
205 251 0.88
206 34 0.12
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTAC
TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
GACTTCGATTTGTACTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAC
ACGTGAAAGC
Found at i:89420561 original size:20 final size:20
Alignment explanation
Indices: 89420523--89420559 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
89420513 CATTAAAGCT
89420523 AAATTAAAAAATATAAAATG
1 AAATTAAAAAATATAAAATG
89420543 AAATT-AAAAATATAAAA
1 AAATTAAAAAATATAAAA
89420560 ATTGCGAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (20 bp):
AAATTAAAAAATATAAAATG
Found at i:89426274 original size:43 final size:43
Alignment explanation
Indices: 89426217--89426444 Score: 221
Period size: 43 Copynumber: 5.3 Consensus size: 43
89426207 TTTTTTTGAA
*
89426217 AAAAAGGCCGCTAAAGACCATGAACTTTAGCGGCGCTTTTTTC
1 AAAAACGCCGCTAAAGACCATGAACTTTAGCGGCGCTTTTTTC
** * * * * *
89426260 GCAAATGCTGCTAAAGACCA-GGACTTTTAGTGGCGC--TTTTA
1 AAAAACGCCGCTAAAGACCATGAAC-TTTAGCGGCGCTTTTTTC
* * * *
89426301 AAAAACACCGCTAAAAACCATGACCTTTAGTGGCGCTTTTTTC
1 AAAAACGCCGCTAAAGACCATGAACTTTAGCGGCGCTTTTTTC
** * *
89426344 GTAAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTTTTC
1 AAAAACGCCGCTAAAGACCATGAACTTTAGCGGCGCTTTTTTC
* *
89426387 AAAAACGCCGCTAAAGATCAT-AACCTTTAGCAGCGCTTTTTTC
1 AAAAACGCCGCTAAAGACCATGAA-CTTTAGCGGCGCTTTTTTC
* * *
89426430 ACAGATGCCGCTAAA
1 AAAAACGCCGCTAAA
89426445 AATAATGATC
Statistics
Matches: 149, Mismatches: 31, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
41 29 0.19
42 6 0.04
43 114 0.77
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGACCATGAACTTTAGCGGCGCTTTTTTC
Found at i:89426357 original size:84 final size:85
Alignment explanation
Indices: 89426224--89426444 Score: 264
Period size: 84 Copynumber: 2.6 Consensus size: 85
89426214 GAAAAAAAGG
* * * *
89426224 CCGCTAAAGACCATGAACTTTAGCGGCGCTTTTTTCGCAAATGCTGCTAAAGACCAGGACTTTTA
1 CCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAACGCCGCTAAAGACCAGGACCTTTA
* *
89426289 GTGGCGC-TTTTAAAAAACA
66 GCGACGCTTTTTAAAAAACA
* * * *
89426308 CCGCTAAAAACCATGACCTTTAGTGGCGCTTTTTTCGTAAACGCCGCTAAAGACCATGACCTTTA
1 CCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAACGCCGCTAAAGACCAGGACCTTTA
* *
89426373 GCGACGCTTTTTTCAAAAACG
66 GCGACGC-TTTTTAAAAAACA
* * * * * *
89426394 CCGCTAAAGATCATAACCTTTAGCAGCGCTTTTTTCACAGATGCCGCTAAA
1 CCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAACGCCGCTAAA
89426445 AATAATGATC
Statistics
Matches: 114, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
84 62 0.54
86 52 0.46
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (85 bp):
CCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAACGCCGCTAAAGACCAGGACCTTTA
GCGACGCTTTTTAAAAAACA
Found at i:89426794 original size:17 final size:18
Alignment explanation
Indices: 89426767--89426800 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
89426757 ATGCCAAAAT
89426767 GTTGAACTCCATATTCCA
1 GTTGAACTCCATATTCCA
89426785 GTTG-ACTCCATATTCC
1 GTTGAACTCCATATTCC
89426801 CCCACATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (18 bp):
GTTGAACTCCATATTCCA
Found at i:89430751 original size:21 final size:21
Alignment explanation
Indices: 89430718--89430765 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
89430708 CATAAACACT
*
89430718 AACCCTTGAACCTTTAAC-CC
1 AACCCTTGAACCTTAAACTCC
89430738 AAACCCTT-ACACCTTAAACTCC
1 -AACCCTTGA-ACCTTAAACTCC
89430760 AACCCT
1 AACCCT
89430766 AACCCCTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 1 0.04
21 21 0.88
22 2 0.08
ACGTcount: A:0.33, C:0.42, G:0.02, T:0.23
Consensus pattern (21 bp):
AACCCTTGAACCTTAAACTCC
Found at i:89430845 original size:21 final size:22
Alignment explanation
Indices: 89430821--89430902 Score: 96
Period size: 21 Copynumber: 3.7 Consensus size: 22
89430811 ACTCCTAAAC
89430821 CTTAAACCCTAAACT-ATATAT
1 CTTAAACCCTAAACTCATATAT
* * *
89430842 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCCTA---AACTCATATAT
89430867 CTTAAACCCTAAA-TCATATAT
1 CTTAAACCCTAAACTCATATAT
89430888 CTTAAACCCTAAACT
1 CTTAAACCCTAAACT
89430903 TTAAACTATA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
21 29 0.58
22 3 0.06
24 4 0.08
25 14 0.28
ACGTcount: A:0.43, C:0.26, G:0.01, T:0.30
Consensus pattern (22 bp):
CTTAAACCCTAAACTCATATAT
Found at i:89430858 original size:46 final size:46
Alignment explanation
Indices: 89430805--89430895 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
89430795 CTTCAAATAC
*
89430805 TAGTTAACTCCTAAACCTTAAACCCTAAA-CTATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAATC-ATATATCTTAAACCA
89430851 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACC
1 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACC
89430896 CTAAACTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 42 0.98
47 1 0.02
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACCA
Found at i:89430952 original size:25 final size:25
Alignment explanation
Indices: 89430918--89430967 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
89430908 CTATAATGAT
89430918 AATTAATTCGATATTTTAAATTCAA
1 AATTAATTCGATATTTTAAATTCAA
89430943 AATTAATTCGATATTTTAAATTCAA
1 AATTAATTCGATATTTTAAATTCAA
89430968 TACTATCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (25 bp):
AATTAATTCGATATTTTAAATTCAA
Found at i:89431142 original size:41 final size:41
Alignment explanation
Indices: 89431096--89431249 Score: 256
Period size: 41 Copynumber: 3.8 Consensus size: 41
89431086 GTTATATGAC
* *
89431096 TTTTAGTGGCGTTTTGT-CGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTT-TCCAAAAGCGCCGCTAATGCTCTGGT
89431137 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
*
89431178 TTTTAGCGGCGTTTTTCCAAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
*
89431219 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTA
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTA
89431250 TAAAATGCCG
Statistics
Matches: 107, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 1 0.01
41 106 0.99
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:89445405 original size:28 final size:26
Alignment explanation
Indices: 89445374--89445437 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
89445364 AATTACTTGA
* **
89445374 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
89445402 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
89445428 ATACCCCTAG
1 ATACCCCTAG
89445438 GGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:89445624 original size:32 final size:27
Alignment explanation
Indices: 89445543--89445628 Score: 106
Period size: 27 Copynumber: 3.2 Consensus size: 27
89445533 GGAAGTGTCC
*
89445543 TGGTGGCTATGCCACA-ATTATCTGATT
1 TGGTGGCTCTGCCACATA-TATCTGATT
89445570 TGGTGGCTCTGCCACATATATCTG-TT
1 TGGTGGCTCTGCCACATATATCTGATT
*
89445596 CTGGTGGCTCTGCCACA-ATATCTGTATC
1 -TGGTGGCTCTGCCACATATATCTG-ATT
89445624 TGGTG
1 TGGTG
89445629 ACTTCATCAC
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
26 9 0.17
27 42 0.79
28 2 0.04
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACATATATCTGATT
Found at i:89472879 original size:47 final size:47
Alignment explanation
Indices: 89472810--89472983 Score: 180
Period size: 47 Copynumber: 3.7 Consensus size: 47
89472800 AGGATATTTG
*
89472810 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTA
* * * *
89472857 GGCATCCGGGCTTGTTGAGTTGAGTTCGAGTTCACTTATG-GATGCGAA-T-
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTA
* * *
89472906 -G--TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTA
*
89472950 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
89472984 CTTGTGGATG
Statistics
Matches: 100, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
45 1 0.01
46 24 0.24
47 56 0.56
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.29
Consensus pattern (47 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTA
Found at i:89472933 original size:46 final size:45
Alignment explanation
Indices: 89472861--89473036 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 45
89472851 TAACTAGGCA
* * *
89472861 TCCGGGCTTGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
89472907 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
89472954 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTGTGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
89473000 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89473037 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 60 0.60
47 30 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.31
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:89472954 original size:93 final size:93
Alignment explanation
Indices: 89472815--89473029 Score: 342
Period size: 93 Copynumber: 2.3 Consensus size: 93
89472805 ATTTGGGCAT
* * *
89472815 CCGAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTAGGCATCCGGGCTTGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
* *
89472880 GT-TCGAGTTCACTTATGGATGCGAATGT
66 GTCT-GAGTTCACTTATGGATGCGAACGC
*
89472908 TCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
*
89472973 GTCTGAGTTCACTTGTGGATGCGAACGC
66 GTCTGAGTTCACTTATGGATGCGAACGC
*
89473001 CCGAGCTCGTTGAGTTGAGTCCGAGTTCG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCG
89473030 CTTATGGGCG
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
93 111 0.99
94 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (93 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
GTCTGAGTTCACTTATGGATGCGAACGC
Found at i:89485928 original size:6 final size:5
Alignment explanation
Indices: 89485903--89485968 Score: 55
Period size: 5 Copynumber: 12.6 Consensus size: 5
89485893 TTTGAGTCCC
*
89485903 TTTAT TTTACT ATTT-T TTTATT TTTAT TTTAT TTCAAT TTTAT TTTAT
1 TTTAT TTTA-T -TTTAT TTTA-T TTTAT TTTAT TT-TAT TTTAT TTTAT
*
89485951 TTT-T TTTAAT TTTCT TTT
1 TTTAT TTT-AT TTTAT TTT
89485969 TGAAAACTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
4 7 0.14
5 27 0.53
6 14 0.27
7 3 0.06
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:89485932 original size:11 final size:11
Alignment explanation
Indices: 89485903--89485969 Score: 59
Period size: 11 Copynumber: 6.3 Consensus size: 11
89485893 TTTGAGTCCC
*
89485903 TTTATTTTACTA
1 TTTATTTTA-TT
89485915 TTT-TTTTATT
1 TTTATTTTATT
89485925 TTTATTTTATT
1 TTTATTTTATT
**
89485936 TCAATTTTA-T
1 TTTATTTTATT
89485946 TTTATTTT-TT
1 TTTATTTTATT
* *
89485956 TTAATTTTCTT
1 TTTATTTTATT
89485967 TTT
1 TTT
89485970 GAAAACTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
10 19 0.42
11 23 0.51
12 3 0.07
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:89485968 original size:15 final size:14
Alignment explanation
Indices: 89485913--89485969 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 14
89485903 TTTATTTTAC
89485913 TATTTT-TTTATTTT
1 TATTTTATTT-TTTT
*
89485927 TATTTTATTTCAATTT
1 TATTTTATTT--TTTT
89485943 TATTTTATTTTTTT
1 TATTTTATTTTTTT
*
89485957 TAATTTTCTTTTT
1 T-ATTTTATTTTT
89485970 GAAAACTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
14 10 0.27
15 13 0.35
16 14 0.38
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.79
Consensus pattern (14 bp):
TATTTTATTTTTTT
Found at i:89495831 original size:40 final size:40
Alignment explanation
Indices: 89495749--89495968 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
89495739 ACCCAAGTAT
** * *
89495749 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
89495787 CTTCGGGTCTTAGCCCAGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
89495827 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
89495867 CTTCGGGTCTTAACCCGGATATAG-CAACTCGCACAAAGGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
89495907 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
89495947 CTTCGGGACTTAGCCTGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
89495969 CATTCGAATA
Statistics
Matches: 150, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 122 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:89504635 original size:46 final size:45
Alignment explanation
Indices: 89504525--89504741 Score: 150
Period size: 46 Copynumber: 4.7 Consensus size: 45
89504515 TCATACTTGT
* ** * *
89504525 GCCGATGCCATGTCCCAAACATGGTCTTACACTAAC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTTG-AG
* *
89504571 GTCGATACATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTTGAG
* * ** * * ** *
89504617 GCCGATGCATGTCTCAGACATGTCTTACTCTAACACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTTGAG
* * ** *
89504663 GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTTGAG
*
89504711 GCCGATGCATGTCCCAGTCATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
89504742 AGCTCACACA
Statistics
Matches: 129, Mismatches: 35, Indels: 14
0.72 0.20 0.08
Matches are distributed among these distances:
44 11 0.09
45 14 0.11
46 60 0.47
47 25 0.19
48 19 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTTGAG
Found at i:89511601 original size:46 final size:46
Alignment explanation
Indices: 89511551--89511723 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
89511541 TGGTTGAGCA
89511551 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
89511597 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
89511642 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89511690 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
89511724 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:89511707 original size:93 final size:93
Alignment explanation
Indices: 89511548--89511717 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
89511538 GGATGGTTGA
* *
89511548 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
89511613 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
89511641 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
89511706 TGAGTCCGAGTT
66 TGAGTCCGAGTT
89511718 TACTTAGGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89511985 original size:19 final size:20
Alignment explanation
Indices: 89511948--89511985 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
89511938 ATAAGGTGGT
89511948 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
89511968 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
89511986 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:89515643 original size:92 final size:92
Alignment explanation
Indices: 89515486--89515671 Score: 345
Period size: 92 Copynumber: 2.0 Consensus size: 92
89515476 AAAAGTTAAA
*
89515486 ATGTTAGGGGTGAATTTGTAATTTTTCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
1 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
* *
89515551 TTTAATTGAATGAAATTACGTATTTAG
66 TTTAATTGAATGAAATTACCTATCTAG
89515578 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
1 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
89515643 TTTAATTGAATGAAATTACCTATCTAG
66 TTTAATTGAATGAAATTACCTATCTAG
89515670 AT
1 AT
89515672 CAAGATAAAT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.39
Consensus pattern (92 bp):
ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
TTTAATTGAATGAAATTACCTATCTAG
Found at i:89517422 original size:28 final size:27
Alignment explanation
Indices: 89517379--89517484 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
89517369 GAAATTAGAG
89517379 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
89517406 TTAATCTGGGCCATAGCCCCTTACAGTATCAA-A
1 TTAATCTGGGCC-TAG--CC---CA-TATCAATA
*
89517439 TT-ATACTGGGCCTAGCCCATATCAGTA
1 TTAAT-CTGGGCCTAGCCCATATCAATA
* *
89517466 TCAATCTTGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
89517485 TATTACAAGT
Statistics
Matches: 64, Mismatches: 4, Indels: 21
0.72 0.04 0.24
Matches are distributed among these distances:
26 5 0.08
27 14 0.22
28 18 0.28
30 4 0.06
32 5 0.08
33 12 0.19
34 6 0.09
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:89517465 original size:32 final size:34
Alignment explanation
Indices: 89517398--89517470 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 34
89517388 CCTTAGCCCA
*
89517398 TATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 TATCAATATTAATCTGGGCCATAGCCCATTACAG
89517432 TATCAA-ATT-ATACTGGGCC-TAGCCCA-TATCAG
1 TATCAATATTAAT-CTGGGCCATAGCCCATTA-CAG
89517464 TATCAAT
1 TATCAAT
89517471 CTTGGCCGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
31 2 0.06
32 17 0.49
33 10 0.29
34 6 0.17
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (34 bp):
TATCAATATTAATCTGGGCCATAGCCCATTACAG
Found at i:89517538 original size:20 final size:20
Alignment explanation
Indices: 89517513--89517558 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
89517503 GTTGGGCCTT
89517513 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
89517533 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
89517552 GCCCATA
1 GCCCATA
89517559 ACAAAACGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:89519131 original size:60 final size:60
Alignment explanation
Indices: 89519038--89519161 Score: 239
Period size: 60 Copynumber: 2.1 Consensus size: 60
89519028 TATATTCGAA
*
89519038 TCCCTTGTTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
1 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
89519098 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
1 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
89519158 TCCC
1 TCCC
89519162 ACCGTTTAGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.44
Consensus pattern (60 bp):
TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
Found at i:89523445 original size:39 final size:39
Alignment explanation
Indices: 89523380--89523530 Score: 135
Period size: 39 Copynumber: 3.7 Consensus size: 39
89523370 ACGTTGTTTG
* *
89523380 AAATTATA-TTTAAGTCTTTAAATAAATTATAGTAAGTT
1 AAATTATATTTTAAGTCTCTAATTAAATTATAGTAAGTT
* * *
89523418 AAATTATATTTTAAATCTCTAAGTAAATTCT-GTTAAGTT
1 AAATTATATTTTAAGTCTCTAATTAAATTATAG-TAAGTT
* ** *
89523457 AACAATTAAATTATGTTGAACCCTCTAATTAAATTATATTAAGTT
1 -A-AATT--A-TAT-TTTAAGTCTCTAATTAAATTATAGTAAGTT
*
89523502 ACATTATATTTTAAGTCTCTAATTAAATT
1 AAATTATATTTTAAGTCTCTAATTAAATT
89523531 TGTGTGATGA
Statistics
Matches: 90, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
38 9 0.10
39 41 0.46
40 4 0.04
41 5 0.06
43 4 0.04
44 4 0.04
45 23 0.26
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (39 bp):
AAATTATATTTTAAGTCTCTAATTAAATTATAGTAAGTT
Found at i:89525596 original size:21 final size:21
Alignment explanation
Indices: 89525542--89525596 Score: 56
Period size: 25 Copynumber: 2.4 Consensus size: 21
89525532 TGAGTAGGCC
* *
89525542 CATTTTCACAACTCGTGTGAG
1 CATTATCATAACTCGTGTGAG
89525563 CATTTACATTCATAACTCGTGTGAG
1 CA-TT--A-TCATAACTCGTGTGAG
89525588 CATTATCAT
1 CATTATCAT
89525597 CACGTGTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
21 6 0.21
22 3 0.11
24 2 0.07
25 17 0.61
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (21 bp):
CATTATCATAACTCGTGTGAG
Found at i:89534477 original size:40 final size:40
Alignment explanation
Indices: 89534395--89534614 Score: 196
Period size: 40 Copynumber: 5.5 Consensus size: 40
89534385 TATTCGAATG
* * * * *
89534395 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* *
89534435 ATATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAG-TGACT
* * *
89534475 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * * *
89534515 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGACC
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * **
89534555 ATATCCGGGCTAAGACTCGAAGGC-CTTGTGTGAGTGGTT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
89534594 ATATCCGG-CTAA-ATCCCGAAG
1 ATATCCGGACTAAGA-CCCGAAG
89534615 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 10 0.07
39 17 0.11
40 120 0.80
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:89534528 original size:80 final size:80
Alignment explanation
Indices: 89534395--89534578 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 80
89534385 TATTCGAATG
* * * *
89534395 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATTCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* * *
89534459 ATTTGTGCGAGTTG-CT
65 AATTATGCGAG-TGACC
* *
89534475 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
89534540 ATTATGCTAGTGACC
66 ATTATGCGAGTGACC
*
89534555 ATATCCGGGCTAAGACTCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
89534579 CTTGTGTGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 88 0.97
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
ATTATGCGAGTGACC
Found at i:89534829 original size:32 final size:32
Alignment explanation
Indices: 89534788--89534857 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
89534778 GATTCCTTAT
*
89534788 GTATGAATATAATGGTTGGAAATGTGAAGTAG
1 GTATGAATATAAGGGTTGGAAATGTGAAGTAG
89534820 GTATGAATATAAGGGTTGGAAATGTGAAGTAG
1 GTATGAATATAAGGGTTGGAAATGTGAAGTAG
89534852 GTATGA
1 GTATGA
89534858 TTGTGAGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.30
Consensus pattern (32 bp):
GTATGAATATAAGGGTTGGAAATGTGAAGTAG
Found at i:89542451 original size:7 final size:7
Alignment explanation
Indices: 89542441--89542483 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
89542431 TGTTTTGTTA
89542441 TAAAATT
1 TAAAATT
89542448 TAAAATT
1 TAAAATT
89542455 TAAAATT
1 TAAAATT
*
89542462 CAAAATT
1 TAAAATT
*
89542469 CAAAATT
1 TAAAATT
*
89542476 CAAAATT
1 TAAAATT
89542483 T
1 T
89542484 TTTTGTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (7 bp):
TAAAATT
Found at i:89542460 original size:14 final size:14
Alignment explanation
Indices: 89542441--89542483 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
89542431 TGTTTTGTTA
*
89542441 TAAAATTTAAAATT
1 TAAAATTCAAAATT
89542455 TAAAATTCAAAATT
1 TAAAATTCAAAATT
*
89542469 CAAAATTCAAAATT
1 TAAAATTCAAAATT
89542483 T
1 T
89542484 TTTTGTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (14 bp):
TAAAATTCAAAATT
Found at i:89543115 original size:11 final size:11
Alignment explanation
Indices: 89543099--89543123 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
89543089 CTGTGTGTTC
89543099 TTTATTTTATT
1 TTTATTTTATT
89543110 TTTATTTTATT
1 TTTATTTTATT
89543121 TTT
1 TTT
89543124 TTAAAACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:89548241 original size:19 final size:19
Alignment explanation
Indices: 89548213--89548256 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
89548203 AGTAAAATGA
* *
89548213 TTTTCGGAAAATGATTTAT
1 TTTTCTGAAAATGATTTAC
89548232 TTTTCTGAAAATGATTTAC
1 TTTTCTGAAAATGATTTAC
89548251 TTTTCT
1 TTTTCT
89548257 AGTGTTTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.11, T:0.52
Consensus pattern (19 bp):
TTTTCTGAAAATGATTTAC
Found at i:89548694 original size:45 final size:45
Alignment explanation
Indices: 89548630--89548720 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
89548620 TTTATGAATT
*
89548630 CTGGCAAATAGATCCATAATTCCAAATCCATAAAGAGAAAAAAAG
1 CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAAAG
89548675 CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAAAG
1 CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAAAG
89548720 C
1 C
89548721 ATGTATAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.52, C:0.18, G:0.13, T:0.18
Consensus pattern (45 bp):
CTGGCAAATAGATCCATAATTCCAAATACATAAAGAGAAAAAAAG
Found at i:89572662 original size:27 final size:27
Alignment explanation
Indices: 89572631--89572808 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
89572621 TAAATTGTAC
89572631 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
89572658 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
89572684 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
89572712 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
89572740 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
89572767 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
89572794 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
89572809 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:89572745 original size:82 final size:81
Alignment explanation
Indices: 89572632--89572787 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
89572622 AAATTGTACA
* *
89572632 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
89572696 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
89572713 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
89572778 TGCGAGTTGA
65 TGCGAATTGA
89572788 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:89572799 original size:82 final size:81
Alignment explanation
Indices: 89572628--89572808 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
89572618 GATTAAATTG
* *
89572628 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
89572693 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
89572709 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
89572773 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
89572791 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
89572809 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:89581687 original size:17 final size:17
Alignment explanation
Indices: 89581665--89581698 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
89581655 CCTAAAATCT
89581665 AATTTAGCCTCTAATTA
1 AATTTAGCCTCTAATTA
* *
89581682 AATTTATCCTTTAATTA
1 AATTTAGCCTCTAATTA
89581699 TAATATAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.47
Consensus pattern (17 bp):
AATTTAGCCTCTAATTA
Found at i:89581804 original size:54 final size:53
Alignment explanation
Indices: 89581740--89581900 Score: 170
Period size: 54 Copynumber: 3.1 Consensus size: 53
89581730 GTCCCATTAT
* *
89581740 AATATAAATTATCCTTTAATTAAATTCAATTTTTAATATAAATTTATTACTTTA
1 AATATAAATTATCCTATAATTAAATTC-ATTTTTAATTTAAATTTATTACTTTA
* * *
89581794 AATATAAATTAT-CTATAATT-AATT-A-TTTTAATTTTAATTTATTGCCTTA
1 AATATAAATTATCCTATAATTAAATTCATTTTTAATTTAAATTTATTACTTTA
* * * * *
89581843 AATATAATTTATCATCTAATTAAATTCTATTTTTATTTTAAATTTCTTGA-TTTA
1 AATATAAATTATCCTATAATTAAATTC-ATTTTTAATTTAAATTTATT-ACTTTA
89581897 AATA
1 AATA
89581901 ATTTTTTTAA
Statistics
Matches: 88, Mismatches: 13, Indels: 12
0.78 0.12 0.11
Matches are distributed among these distances:
49 31 0.35
50 7 0.08
51 4 0.05
52 4 0.05
53 8 0.09
54 34 0.39
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.52
Consensus pattern (53 bp):
AATATAAATTATCCTATAATTAAATTCATTTTTAATTTAAATTTATTACTTTA
Found at i:89581834 original size:49 final size:50
Alignment explanation
Indices: 89581740--89581900 Score: 146
Period size: 49 Copynumber: 3.1 Consensus size: 50
89581730 GTCCCATTAT
* * *
89581740 AATATAAATTATCCTTTAATTAAATTCAATTTTTAATATAAATTTATTACTTTA
1 AATATAAATTAT-CTATAATTAAATT--A-TTTTAATTTTAATTTATTACTTTA
* *
89581794 AATATAAATTATCTATAATT-AATTATTTTAATTTTAATTTATTGCCTTA
1 AATATAAATTATCTATAATTAAATTATTTTAATTTTAATTTATTACTTTA
* * * *
89581843 AATATAATTTATCATCTAATTAAATTCTATTTTTATTTTAAATTTCTTGA-TTTA
1 AATATAAATTATC-TATAATTAAA-T-TATTTTAATTTT-AATTTATT-ACTTTA
89581897 AATA
1 AATA
89581901 ATTTTTTTAA
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
49 32 0.36
50 7 0.08
51 2 0.02
52 5 0.06
53 18 0.20
54 26 0.29
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.52
Consensus pattern (50 bp):
AATATAAATTATCTATAATTAAATTATTTTAATTTTAATTTATTACTTTA
Found at i:89582141 original size:51 final size:51
Alignment explanation
Indices: 89582019--89582148 Score: 147
Period size: 51 Copynumber: 2.6 Consensus size: 51
89582009 GGGTGTCGAC
* * * * *
89582019 CATCAGTACCCCAGCA-CTAATTTTTTTTAATCTGGTACAAGAGTGTCAGT
1 CATCAGTATCCCAACACCCAATTTTTTTTAATCTAGTACAAGAGTGTCAAT
* * *
89582069 CATTAGTATCCCAACATCCAATTTTTTTTAATCTAGTACAAGATTGTCAAT
1 CATCAGTATCCCAACACCCAATTTTTTTTAATCTAGTACAAGAGTGTCAAT
**
89582120 CATCAGTATCTTAGA-ACCCAATTTTTTTT
1 CATCAGTATCCCA-ACACCCAATTTTTTTT
89582149 TTTTTTTTTG
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
50 13 0.19
51 53 0.79
52 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (51 bp):
CATCAGTATCCCAACACCCAATTTTTTTTAATCTAGTACAAGAGTGTCAAT
Found at i:89585417 original size:44 final size:42
Alignment explanation
Indices: 89585335--89585512 Score: 196
Period size: 43 Copynumber: 4.1 Consensus size: 42
89585325 TTTGGGATAG
* *
89585335 TGGCATCGATATATGATTTCGTGTAAGACCACGTCTGGGACAT
1 TGGCATCGATTTA-GATTTCGTGTAAGACCATGTCTGGGACAT
89585378 TGGCATCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACAT
1 TGGCATCGATTT-AGATTT-CGTGTAAGACCATGTCTGGGACAT
* * * * * *
89585422 TGGCATCGAATTTA-ATTTTGTATAAGACCCTGTTTGGGATAG
1 TGGCATCG-ATTTAGATTTCGTGTAAGACCATGTCTGGGACAT
* * * *
89585464 TGGCATCGATATTTGATTACATGTAAGACCATGTCTGGGACGT
1 TGGCATCGAT-TTAGATTTCGTGTAAGACCATGTCTGGGACAT
89585507 TGGCAT
1 TGGCAT
89585513 TGTACGAGTA
Statistics
Matches: 112, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.02
42 28 0.25
43 45 0.40
44 33 0.29
45 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
TGGCATCGATTTAGATTTCGTGTAAGACCATGTCTGGGACAT
Found at i:89589201 original size:45 final size:45
Alignment explanation
Indices: 89589137--89589308 Score: 246
Period size: 45 Copynumber: 3.9 Consensus size: 45
89589127 GTTATTCAAG
89589137 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
89589182 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
89589227 TATTCGGG-CTTTCGAGCCTAACAGGCTATAATGCCGGTGA-A-AT
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
89589270 GATATCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
89589309 TTTGAGAAAA
Statistics
Matches: 117, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
42 12 0.10
43 15 0.13
44 11 0.09
45 79 0.68
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:89593207 original size:15 final size:15
Alignment explanation
Indices: 89593184--89593213 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89593174 TCAAAAACTC
89593184 TAATACAAAACATAT
1 TAATACAAAACATAT
*
89593199 TAATCCAAAACATAT
1 TAATACAAAACATAT
89593214 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:89597344 original size:42 final size:43
Alignment explanation
Indices: 89597171--89597360 Score: 154
Period size: 42 Copynumber: 4.4 Consensus size: 43
89597161 TGAGATATCG
* * *
89597171 TGTAAGACCCTGTCTGGGACAGTGGCAACGATATATGATTTCA
1 TGTAAGACCCTGTCTGGGACAATGGCATCGATATATGATTACA
** * *
89597214 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATTTGA-GATTTACG
1 TGTAAGACC-CTGTCTGGGACAATGGCATCGATAT-ATGA-TTACA
* * * * * * * *
89597258 TATAAGACCATGTTTGGGATATTGGCATC-ATATTTAATTTCA
1 TGTAAGACCCTGTCTGGGACAATGGCATCGATATATGATTACA
* *
89597300 TGTAAGACCCTGTATGGG-CAATGACATCGATATATGATTACA
1 TGTAAGACCCTGTCTGGGACAATGGCATCGATATATGATTACA
**
89597342 TGTAAGACAATGTCTGGGA
1 TGTAAGACCCTGTCTGGGA
89597361 TGTTAGCATT
Statistics
Matches: 112, Mismatches: 28, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
41 7 0.06
42 43 0.38
43 34 0.30
44 28 0.25
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACAATGGCATCGATATATGATTACA
Found at i:89603063 original size:27 final size:26
Alignment explanation
Indices: 89603023--89603189 Score: 210
Period size: 27 Copynumber: 6.2 Consensus size: 26
89603013 AGGAAGCGTC
*
89603023 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
89603050 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
89603077 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
89603104 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
89603131 CTGGTGGCTCTGCCACAATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
89603159 CTGGTGACTCTGTCACATTATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
89603186 CTGG
1 CTGG
89603190 CAGCCATGCT
Statistics
Matches: 126, Mismatches: 7, Indels: 14
0.86 0.05 0.10
Matches are distributed among these distances:
26 5 0.04
27 101 0.80
28 19 0.15
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:89603105 original size:54 final size:54
Alignment explanation
Indices: 89603023--89603189 Score: 264
Period size: 54 Copynumber: 3.1 Consensus size: 54
89603013 AGGAAGCGTC
89603023 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
89603077 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
89603131 CTGGTGGCTCTGCCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGT-T
89603186 CTGG
1 CTGG
89603190 CAGCCATGCT
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
54 81 0.78
55 23 0.22
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:89611150 original size:27 final size:26
Alignment explanation
Indices: 89611112--89611275 Score: 195
Period size: 27 Copynumber: 6.0 Consensus size: 26
89611102 AAGCGTCCTA
*
89611112 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
89611139 GTGGCTCTGCCACATATATCT-ATCCTG
1 GTGGCTCTGCCACAT-TATCTGAT-CTG
*
89611166 GTGGCTATGCCACGATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
89611193 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
*
89611220 GTGGCTCTACCACAATTATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTG-ATCTG
* *
89611248 GTGACTCTGTCACATTATCTGTATCTG
1 GTGGCTCTGCCACATTATCTG-ATCTG
89611275 G
1 G
89611276 CAGCCATGCT
Statistics
Matches: 121, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.05
27 95 0.79
28 20 0.17
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTG
Found at i:89611268 original size:54 final size:54
Alignment explanation
Indices: 89611112--89611275 Score: 240
Period size: 54 Copynumber: 3.0 Consensus size: 54
89611102 AAGCGTCCTA
* *
89611112 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATCCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
*
89611166 GTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
* * * *
89611220 GTGGCTCTACCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTATCTG
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGT-TCTG
89611275 G
1 G
89611276 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
54 77 0.77
55 23 0.23
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
Found at i:89613110 original size:19 final size:19
Alignment explanation
Indices: 89613085--89613175 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
89613075 ATAATCTTCA
89613085 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* * *
89613104 GTGATATGGAATCTTTGAT
1 ATGATATGCAATCTTAGAT
89613123 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
89613140 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
89613158 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
89613176 AGATATGATA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
17 14 0.23
18 16 0.26
19 32 0.52
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:89613159 original size:35 final size:37
Alignment explanation
Indices: 89613093--89613182 Score: 116
Period size: 36 Copynumber: 2.5 Consensus size: 37
89613083 CAATGATATG
* * *
89613093 CAATCTTAGATGTGATATGGAATCTTTGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
89613129 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
89613166 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
89613183 ATATTGTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
35 17 0.35
36 18 0.38
37 13 0.27
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:89625198 original size:206 final size:207
Alignment explanation
Indices: 89624842--89625216 Score: 583
Period size: 206 Copynumber: 1.8 Consensus size: 207
89624832 CAGGTTAAAG
** * *
89624842 TATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTAGCATCCTTGT
1 TATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGGTTTAGCATCCTTGT
* * * *
89624907 GCTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
*
89624972 TAAGATGATTTGGTATCTCTGTATTGTCA-GAGAACAAATCAAAGTTTGGCATCTCCATATTCGA
131 TAAGATGATTTGGCATCTCTGTATTGTCATG-GAACAAATCAAAGTTTGGCATCTCCATATTCGA
89625036 CGGAGGACAGATA
195 CGGAGGACAGATA
* *
89625049 TATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGGATCCTTGT
1 TATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGGTTTAGCATCCTTGT
* * ** *
89625113 GCTTACAAGGAGCAAATCGGAGACATGGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
89625178 TAAGATGATTTGGCATCTCTGTATTGTCATGGAACAAAT
131 TAAGATGATTTGGCATCTCTGTATTGTCATGGAACAAAT
89625217 TGAAGAAGCA
Statistics
Matches: 151, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
206 117 0.77
207 34 0.23
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (207 bp):
TATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAAGATCCAAGATGGTTTAGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
TAAGATGATTTGGCATCTCTGTATTGTCATGGAACAAATCAAAGTTTGGCATCTCCATATTCGAC
GGAGGACAGATA
Found at i:89625685 original size:35 final size:35
Alignment explanation
Indices: 89625620--89625737 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
89625610 CAATGATATG
* *
89625620 CAATCTTAGATGTGATATGGAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
89625656 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
89625691 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
89625728 CAATCTTAGA
1 CAATCTTAGA
89625738 AGATATGATT
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 50 0.64
36 15 0.19
37 13 0.17
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:89631390 original size:20 final size:20
Alignment explanation
Indices: 89631367--89631473 Score: 55
Period size: 20 Copynumber: 5.2 Consensus size: 20
89631357 ATTATATAAC
*
89631367 ATTTATTATATT-TTATTTTT
1 ATTT-TTATATTATTATTATT
89631387 A-TTTTATATTACTTATTATT
1 ATTTTTATATTA-TTATTATT
*
89631407 ATTTTT-TA-TATATGTTATGT
1 ATTTTTATATTAT-TATTAT-T
**
89631427 ATATCATATATTATCTATTA-T
1 AT-TTTTATATTAT-TATTATT
89631448 ATTATTTATTATTCATTA-TATT
1 ATT-TTTA-TATT-ATTATTATT
89631470 ATTT
1 ATTT
89631474 AAAATTTTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 23
0.68 0.08 0.23
Matches are distributed among these distances:
18 8 0.12
19 9 0.13
20 15 0.22
21 14 0.21
22 12 0.18
23 9 0.13
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTTTATATTATTATTATT
Found at i:89631403 original size:30 final size:31
Alignment explanation
Indices: 89631350--89631411 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
89631340 ATCCAAATTA
*
89631350 TATTTTTATTATATAACATTTATTA-TATTT
1 TATTTTTATTATATAACACTTATTATTATTT
* **
89631380 TATTTTTATTTTATATTACTTATTATTATTT
1 TATTTTTATTATATAACACTTATTATTATTT
89631411 T
1 T
89631412 TTATATATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (31 bp):
TATTTTTATTATATAACACTTATTATTATTT
Found at i:89631457 original size:19 final size:19
Alignment explanation
Indices: 89631346--89631474 Score: 67
Period size: 19 Copynumber: 6.7 Consensus size: 19
89631336 ATGTATCCAA
89631346 ATTATATT-TTTATTATATAAC
1 ATTATATTATTTATTAT-T--C
89631367 ATT-TATTATATT-TTATT-
1 ATTATATTAT-TTATTATTC
* *
89631384 TTTATTTTATATTACTTATT-
1 ATTATATTAT-TTA-TTATTC
*
89631404 ATTAT-TT-TTTATATATGTT
1 ATTATATTATTTAT-TAT-TC
* *
89631423 ATGTATATCATATATTA-TC
1 AT-TATATTATTTATTATTC
89631442 TATTATATTATTTATTATTC
1 -ATTATATTATTTATTATTC
89631462 ATTATATTATTTA
1 ATTATATTATTTA
89631475 AAATTTTAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 28
0.71 0.07 0.23
Matches are distributed among these distances:
16 1 0.01
17 8 0.09
18 10 0.11
19 30 0.34
20 21 0.24
21 11 0.13
22 6 0.07
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTATATTATTTATTATTC
Found at i:89631674 original size:24 final size:24
Alignment explanation
Indices: 89631647--89631694 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
89631637 TTTAAAACCC
89631647 AATATATT-TTATCATTCTTTTATA
1 AATATATTGTTATCA-TCTTTTATA
* *
89631671 AATATTTTGTTATCATGTTTTATA
1 AATATATTGTTATCATCTTTTATA
89631695 TATTGTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
AATATATTGTTATCATCTTTTATA
Found at i:89631926 original size:33 final size:33
Alignment explanation
Indices: 89631884--89631953 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
89631874 TTGTATTACT
*
89631884 CTTTTTTGTATATCATACATTATTTAATTATTA
1 CTTTTTTGTATATCATACATTATTTAATTATGA
*
89631917 CTTTTTTGTATATCATGCATTATTTAATTATGA
1 CTTTTTTGTATATCATACATTATTTAATTATGA
89631950 CTTT
1 CTTT
89631954 GTATGTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.57
Consensus pattern (33 bp):
CTTTTTTGTATATCATACATTATTTAATTATGA
Found at i:89637352 original size:42 final size:42
Alignment explanation
Indices: 89637293--89637378 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
89637283 GGGTCATATG
89637293 ATCCAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTT
1 ATCCAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTT
*
89637335 ATCCAAAATTGCGAAGAGTTCAAGGCCATGGTACAAGGCCTT
1 ATCCAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTT
89637377 AT
1 AT
89637379 GGTTAACAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (42 bp):
ATCCAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTT
Found at i:89642899 original size:35 final size:35
Alignment explanation
Indices: 89642860--89642926 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
89642850 TATTTAAAAG
89642860 ATGATAATCACAACTTACATAAACAGTTAAAGTTT
1 ATGATAATCACAACTTACATAAACAGTTAAAGTTT
* * *
89642895 ATGATTATCATAACTTACATAAACATTTAAAG
1 ATGATAATCACAACTTACATAAACAGTTAAAG
89642927 AATATAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.33
Consensus pattern (35 bp):
ATGATAATCACAACTTACATAAACAGTTAAAGTTT
Found at i:89648266 original size:24 final size:24
Alignment explanation
Indices: 89648239--89648286 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
89648229 GCCTTGCCAA
89648239 AATAAAATATTTATATTTCTATTT
1 AATAAAATATTTATATTTCTATTT
89648263 AATAAAATATTTATATTTCTATTT
1 AATAAAATATTTATATTTCTATTT
89648287 TTTAATAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
AATAAAATATTTATATTTCTATTT
Found at i:89649486 original size:10 final size:11
Alignment explanation
Indices: 89649466--89649490 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
89649456 CTGATCTATC
89649466 TTTCTTTTTTT
1 TTTCTTTTTTT
89649477 TTTCTTTTTTT
1 TTTCTTTTTTT
89649488 TTT
1 TTT
89649491 ACTTGGGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:89649803 original size:45 final size:45
Alignment explanation
Indices: 89649752--89649895 Score: 120
Period size: 45 Copynumber: 3.2 Consensus size: 45
89649742 TTCCTGATTA
89649752 ATTGTTAAATAAAATTATTTCTAAGTAAGACTCTGCATAGGTAGG
1 ATTGTTAAATAAAATTATTTCTAAGTAAGACTCTGCATAGGTAGG
* * * * * *
89649797 ATTGTTAAAT-TAATCATTGT-TAAATCAAGAGT-TGTTC-TTGATTA--
1 ATTGTTAAATAAAATTATT-TCTAAGT-AAGACTCTG--CATAG-GTAGG
* * *
89649841 ATTGTTAAATAAAATTATTTCTAAGCAAGGCTCCGCATAGGTAGG
1 ATTGTTAAATAAAATTATTTCTAAGTAAGACTCTGCATAGGTAGG
89649886 ATTGTTAAAT
1 ATTGTTAAAT
89649896 TCATTGTTAA
Statistics
Matches: 73, Mismatches: 15, Indels: 22
0.66 0.14 0.20
Matches are distributed among these distances:
43 3 0.04
44 29 0.40
45 38 0.52
46 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (45 bp):
ATTGTTAAATAAAATTATTTCTAAGTAAGACTCTGCATAGGTAGG
Found at i:89649839 original size:89 final size:86
Alignment explanation
Indices: 89649728--89649907 Score: 288
Period size: 89 Copynumber: 2.1 Consensus size: 86
89649718 AAACTGGGCC
* * *
89649728 TAAATTAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGTAAGACTCTGCATAGG
1 TAAATCAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
89649793 TAGGATTGTTAAATTAATCATTGT
66 TAGGATTGTTAAA-T--TCATTGT
* *
89649817 TAAATCAAGAGTTGTTCTTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGGCTCCGCATAGG
1 TAAATCAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
89649882 TAGGATTGTTAAATTCATTGT
66 TAGGATTGTTAAATTCATTGT
89649903 TAAAT
1 TAAAT
89649908 TAATCATTAT
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
86 12 0.14
88 1 0.01
89 73 0.85
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (86 bp):
TAAATCAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
TAGGATTGTTAAATTCATTGT
Found at i:89649972 original size:101 final size:101
Alignment explanation
Indices: 89649797--89650009 Score: 381
Period size: 101 Copynumber: 2.1 Consensus size: 101
89649787 CATAGGTAGG
* * *
89649797 ATTGTTAAATTAATCATTGTTAAATCAAGAGTTGTTCTTGATTAATTGTTAAATAAAATTATTTC
1 ATTGTTAAATTAATCATTATTAAATCAAGAGTTGTTCCTAATTAATTGTTAAATAAAATTATTTC
*
89649862 TAAGCAAGGCTCCGCATAGGTAGGATTGTTAAATTC
66 TAAGCAAGGCTCCGCATAGGTAGGATTGCTAAATTC
89649898 ATTGTTAAATTAATCATTATTAAATCAAGAGTTGTTCCTAATTAATTGTTAAATAAAATTATTTC
1 ATTGTTAAATTAATCATTATTAAATCAAGAGTTGTTCCTAATTAATTGTTAAATAAAATTATTTC
*
89649963 TAAGCAAGGCTCGGCATAGGTAGGATTGCTAAATTC
66 TAAGCAAGGCTCCGCATAGGTAGGATTGCTAAATTC
89649999 ATTGTTAAATT
1 ATTGTTAAATT
89650010 CAAACTGTGT
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 107 1.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (101 bp):
ATTGTTAAATTAATCATTATTAAATCAAGAGTTGTTCCTAATTAATTGTTAAATAAAATTATTTC
TAAGCAAGGCTCCGCATAGGTAGGATTGCTAAATTC
Found at i:89671928 original size:14 final size:13
Alignment explanation
Indices: 89671895--89671933 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
89671885 ATGTTTAAAA
*
89671895 ACTTTTATTTATT
1 ACTTTTATTTTTT
89671908 A-TTTTATGTTTTT
1 ACTTTTAT-TTTTT
89671921 ACTTTTATTTTTT
1 ACTTTTATTTTTT
89671934 TAAGACTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 6 0.26
13 11 0.48
14 6 0.26
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (13 bp):
ACTTTTATTTTTT
Found at i:89671934 original size:14 final size:14
Alignment explanation
Indices: 89671895--89671935 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
89671885 ATGTTTAAAA
*
89671895 ACTTTTA-TTTATT
1 ACTTTTATTTTTTT
*
89671908 A-TTTTATGTTTTT
1 ACTTTTATTTTTTT
89671921 ACTTTTATTTTTTT
1 ACTTTTATTTTTTT
89671935 A
1 A
89671936 AGACTACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 5 0.22
13 6 0.26
14 12 0.52
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (14 bp):
ACTTTTATTTTTTT
Found at i:89679238 original size:43 final size:43
Alignment explanation
Indices: 89679177--89679264 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
89679167 TATTCAATCT
89679177 TACCAATTCCACACCTTGAGGAGCTATGGGAATCGGTTGGGGA
1 TACCAATTCCACACCTTGAGGAGCTATGGGAATCGGTTGGGGA
89679220 TACCAATTCCACACCTTGAGGAGCTATGGGAATCGGTTGGGGA
1 TACCAATTCCACACCTTGAGGAGCTATGGGAATCGGTTGGGGA
89679263 TA
1 TA
89679265 AGGAGGGGGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (43 bp):
TACCAATTCCACACCTTGAGGAGCTATGGGAATCGGTTGGGGA
Found at i:89686976 original size:46 final size:46
Alignment explanation
Indices: 89686926--89687098 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
89686916 TGGTTGAGTA
*
89686926 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
89686972 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
89687019 TCCGAACTTGTTGAGTTGAGTCCGATTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
89687065 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
89687099 GGGCAGGTTA
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:89687084 original size:93 final size:93
Alignment explanation
Indices: 89686925--89687093 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 93
89686915 ATGGTTGAGT
* * *
89686925 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGTTG
89686990 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
* * * * *
89687018 ATCCGAACTTGTTGAGTTGAGTCCGATTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGTTG
89687083 AGTCCGAGTTC
66 AGTCCGAGTTC
89687094 ACTTAGGGCA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:89690165 original size:15 final size:15
Alignment explanation
Indices: 89690143--89690177 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
89690133 TTTTGTTTCC
*
89690143 TTTATTTTT-TTATT
1 TTTATTTTTAGTATT
89690157 TTTATTTTTAGTATT
1 TTTATTTTTAGTATT
89690172 TTTATT
1 TTTATT
89690178 ATTATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTATTTTTAGTATT
Found at i:89692006 original size:24 final size:24
Alignment explanation
Indices: 89691954--89692006 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
89691944 ATGCACATAG
* *
89691954 TTTTATGTGTTTTATTTTTCTTAC
1 TTTTATGTATTTTATGTTTCTTAC
*
89691978 TTTTATGTTATTTTATGTTT-TTAT
1 TTTTATG-TATTTTATGTTTCTTAC
89692002 TTTTA
1 TTTTA
89692007 ATTTTTCGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.15, C:0.04, G:0.08, T:0.74
Consensus pattern (24 bp):
TTTTATGTATTTTATGTTTCTTAC
Found at i:89709531 original size:40 final size:40
Alignment explanation
Indices: 89709348--89709517 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
89709338 TCCTCGTTCA
* * * *
89709348 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
89709387 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
89709427 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
89709467 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
89709507 AAGGCCTTCGG
1 AATGCCTTCGG
89709518 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:89721751 original size:31 final size:31
Alignment explanation
Indices: 89721713--89721776 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
89721703 CCTTTTCATA
89721713 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
89721744 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
89721775 TT
1 TT
89721777 ACTGTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:89722021 original size:23 final size:23
Alignment explanation
Indices: 89721991--89722085 Score: 156
Period size: 23 Copynumber: 4.1 Consensus size: 23
89721981 CCTAGCCCCT
89721991 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
89722014 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
89722036 TATAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
89722059 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
89722083 TTT
1 TTT
89722086 TACACTTCCT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
22 21 0.31
23 25 0.37
24 21 0.31
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:89722045 original size:45 final size:47
Alignment explanation
Indices: 89721993--89722083 Score: 159
Period size: 45 Copynumber: 2.0 Consensus size: 47
89721983 TAGCCCCTTT
*
89721993 TAATAACTGGGGCATAAGCCC-TTTAATAACT-GGGCATAAGCCCTA
1 TAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTA
89722038 TAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCT
1 TAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCT
89722084 TTTACACTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
45 20 0.47
46 10 0.23
47 13 0.30
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (47 bp):
TAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTA
Found at i:89722074 original size:24 final size:24
Alignment explanation
Indices: 89721987--89722087 Score: 163
Period size: 24 Copynumber: 4.3 Consensus size: 24
89721977 GAAGCCTAGC
89721987 CCCTTTTAATAACTGGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
89722011 CCC-TTTAATAACT-GGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
* *
89722033 CCC-TATAATAACTAGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
89722056 CCCTTTTAATAACTGGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
89722080 CCCTTTTA
1 CCCTTTTA
89722088 CACTTCCTCC
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
22 21 0.29
23 22 0.31
24 29 0.40
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (24 bp):
CCCTTTTAATAACTGGGGCATAAG
Found at i:89722161 original size:20 final size:20
Alignment explanation
Indices: 89722136--89722182 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
89722126 TTGTGATTAC
89722136 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
89722156 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
89722176 ACCATGT
1 ATCATGT
89722183 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:89733246 original size:55 final size:53
Alignment explanation
Indices: 89733179--89733315 Score: 148
Period size: 53 Copynumber: 2.5 Consensus size: 53
89733169 GCAAGGAAAT
* * *
89733179 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGAAAAGACAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCAATAAT-AACTAC-AAAAGACAAAGATAC
* * * * * * * *
89733234 CATGTAAGACCATGCCAAGGCATGGCAATAATGAGTTCATAAGGCAATGATAC
1 CATGTAAGACCATGTCAAGACATGGCAATAATAACTACAAAAGACAAAGATAC
*
89733287 CACGTAAGACCATGTCAAGACATGGCAAT
1 CATGTAAGACCATGTCAAGACATGGCAAT
89733316 GGTAAGTTTA
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 37 0.54
54 3 0.04
55 28 0.41
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.19
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCAATAATAACTACAAAAGACAAAGATAC
Found at i:89736250 original size:17 final size:17
Alignment explanation
Indices: 89736228--89736263 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
89736218 AATAAGTACA
89736228 TAGAGTTGTCGAACTTG
1 TAGAGTTGTCGAACTTG
89736245 TAGAGTTGTCGAACTTG
1 TAGAGTTGTCGAACTTG
89736262 TA
1 TA
89736264 AAATTCGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.36
Consensus pattern (17 bp):
TAGAGTTGTCGAACTTG
Found at i:89753539 original size:94 final size:95
Alignment explanation
Indices: 89753120--89753551 Score: 330
Period size: 95 Copynumber: 4.6 Consensus size: 95
89753110 TTTACAAAAC
* * * * * *
89753120 TTAGATAAGTGCCTTAAATGGCTTAACATTGTATCTAGTATTAGACTTAGTGAGCAATTTCCTCT
1 TTAGCTAAGTGCCTTAAAAGGCTTAGCAGTATATCTACTATTAGACTTAGTGAGCAATTTCCTCT
* * * *
89753185 C-AGGGTGTCTGCTTTATAACTTCATTGA-AT
66 CGAGAGTATCTACTTTATAAC-T-ATTGATTT
* * * * * *
89753215 TTAGCTAAGTGCCCTAATAGGCTTAGCAGTATATCTATTATTAGAATTAGTGAGTAGTTTCCTCT
1 TTAGCTAAGTGCCTTAAAAGGCTTAGCAGTATATCTACTATTAGACTTAGTGAGCAATTTCCTCT
* * *
89753280 -AAGAGTATCTACTTTATAAATATTGAATT
66 CGAGAGTATCTACTTTATAACTATTGATTT
* * * * ** * *
89753309 TTGGCTAAGTGCCTTAAAAGGC-TAGAAGTA-ATTCTTCTATTACACTTAGTGATTAGTTTCTTC
1 TTAGCTAAGTGCCTTAAAAGGCTTAGCAGTATA-TCTACTATTAGACTTAGTGAGCAATTTCCTC
**
89753372 TCTCGA-TATCTACTTTATAACT-TTG-TTGAAT
65 TCGAGAGTATCTACTTTATAACTATTGATT---T
* * * * *
89753403 TTAGCTACA-TGCCTTAAGAGGCTTAGCAATATATTTGA-TATTAGACTTAATGAACAATTTCCT
1 TTAGCTA-AGTGCCTTAAAAGGCTTAGCAGTATATCT-ACTATTAGACTTAGTGAGCAATTTCCT
* * * *
89753466 CTCGA-ATTGTCTGCTCTATAGA-TATTGATTT
64 CTCGAGAGTATCTACTTTATA-ACTATTGATTT
* * *
89753497 TTGGCTAAGTGCCTTAAAAGGCTTAGCAGTATATCTACTATTAGATTTAGCGAGC
1 TTAGCTAAGTGCCTTAAAAGGCTTAGCAGTATATCTACTATTAGACTTAGTGAGC
89753552 CTAAAAGGTG
Statistics
Matches: 265, Mismatches: 55, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
91 1 0.00
92 4 0.02
93 55 0.21
94 87 0.33
95 111 0.42
96 5 0.02
97 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (95 bp):
TTAGCTAAGTGCCTTAAAAGGCTTAGCAGTATATCTACTATTAGACTTAGTGAGCAATTTCCTCT
CGAGAGTATCTACTTTATAACTATTGATTT
Found at i:89754693 original size:20 final size:20
Alignment explanation
Indices: 89754602--89754712 Score: 66
Period size: 20 Copynumber: 5.5 Consensus size: 20
89754592 GATTAATAGT
* *
89754602 TTTCTCTAGGAGTTAATCAA-
1 TTTCCCTAGGAGTT-AGCAAC
**
89754622 TCTTCCCTAGGAGTTA-CGAGT
1 T-TTCCCTAGGAGTTAGC-AAC
* *
89754643 TTTCCCTAGAAGTTTAGTAATC
1 TTTCCCTAGGAG-TTAGCAA-C
*
89754665 TTT-CATAGGAGTTAGCAAC
1 TTTCCCTAGGAGTTAGCAAC
* *
89754684 TTTCCCTAGGAGTCAACAAC
1 TTTCCCTAGGAGTTAGCAAC
*
89754704 ATTCCCTAG
1 TTTCCCTAG
89754713 ATGTGGCGCT
Statistics
Matches: 71, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
19 5 0.07
20 40 0.56
21 23 0.32
22 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (20 bp):
TTTCCCTAGGAGTTAGCAAC
Found at i:89757210 original size:46 final size:44
Alignment explanation
Indices: 89757127--89757241 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 44
89757117 GACAAGAGCT
* *
89757127 AGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATGT--GCC
* *
89757173 AGTGTAAGACATGTTTGGGACATGCATCAG-TTACGAGATGTGTC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCT-CGAGATGTGCC
*
89757217 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTTTGGGACATG
89757242 GCATTGGCAT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 11 0.18
45 15 0.24
46 36 0.58
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATGTGCC
Found at i:89767105 original size:24 final size:25
Alignment explanation
Indices: 89767078--89767125 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
89767068 CATTTGGATA
*
89767078 AAATAATTCAAT-AAATTTAAAATC
1 AAATAATTAAATCAAATTTAAAATC
*
89767102 AAATCATTAAATCAAATTTAAAAT
1 AAATAATTAAATCAAATTTAAAAT
89767126 TTAAGAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (25 bp):
AAATAATTAAATCAAATTTAAAATC
Found at i:89773105 original size:19 final size:19
Alignment explanation
Indices: 89773081--89773119 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
89773071 ATTTGAAAGA
*
89773081 ATCGCTCATATTCATAAAC
1 ATCGCTCACATTCATAAAC
*
89773100 ATCGCTCACCTTCATAAAC
1 ATCGCTCACATTCATAAAC
89773119 A
1 A
89773120 ATCTTCAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.05, T:0.28
Consensus pattern (19 bp):
ATCGCTCACATTCATAAAC
Found at i:89793295 original size:23 final size:24
Alignment explanation
Indices: 89793219--89793311 Score: 82
Period size: 24 Copynumber: 3.8 Consensus size: 24
89793209 GACTCACCAT
* * *
89793219 AGCTCGTATGAGCTTACCGATATATC
1 AGCTCGTAAGAGCTTACTG-T-TTTC
89793245 AGCTCGTAAGAGCTTACTGTTTTC
1 AGCTCGTAAGAGCTTACTGTTTTC
* * *
89793269 AGCTCGTTAGATCTTATTG-TTTC
1 AGCTCGTAAGAGCTTACTGTTTTC
*
89793292 AGCTC-AATAGAGCTTACTGT
1 AGCTCGTA-AGAGCTTACTGT
89793312 CCATCAGCTC
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
23 18 0.33
24 19 0.35
25 1 0.02
26 17 0.31
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACTGTTTTC
Found at i:89793340 original size:23 final size:23
Alignment explanation
Indices: 89793290--89793340 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 23
89793280 TCTTATTGTT
*
89793290 TCAGCTCAATAGAGCTTACTGTCCA
1 TCAGCTCAAGAGAGCTTACTG--CA
89793315 TCAGCTCAAGAGGAGCTTACTG-A
1 TCAGCTCAAGA-GAGCTTACTGCA
89793338 TCA
1 TCA
89793341 TAGCTCGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 4 0.17
25 10 0.42
26 10 0.42
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (23 bp):
TCAGCTCAAGAGAGCTTACTGCA
Found at i:89795257 original size:36 final size:36
Alignment explanation
Indices: 89795217--89795288 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
89795207 GCAAATCATG
*
89795217 CCATACATACAACCAATCTCAAACCAAATAACACAA
1 CCATACATACAACCAATATCAAACCAAATAACACAA
*
89795253 CCATACATACAACCAATATCATACCAAATAACACAA
1 CCATACATACAACCAATATCAAACCAAATAACACAA
89795289 TCATGCATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (36 bp):
CCATACATACAACCAATATCAAACCAAATAACACAA
Found at i:89803643 original size:12 final size:12
Alignment explanation
Indices: 89803626--89803650 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
89803616 TATCAAAACA
89803626 ATAATTAAGAAC
1 ATAATTAAGAAC
89803638 ATAATTAAGAAC
1 ATAATTAAGAAC
89803650 A
1 A
89803651 AGTCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
ATAATTAAGAAC
Found at i:89804027 original size:13 final size:13
Alignment explanation
Indices: 89804009--89804035 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89803999 GCTCGACAGG
89804009 GACACGCCCGTGT
1 GACACGCCCGTGT
89804022 GACACGCCCGTGT
1 GACACGCCCGTGT
89804035 G
1 G
89804036 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:89809371 original size:18 final size:18
Alignment explanation
Indices: 89809348--89809384 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
89809338 AATTTACTAT
89809348 GAAAATGCATGAATTAGA
1 GAAAATGCATGAATTAGA
89809366 GAAAATGCATGAATTAGA
1 GAAAATGCATGAATTAGA
89809384 G
1 G
89809385 CTCTAAAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.24, T:0.22
Consensus pattern (18 bp):
GAAAATGCATGAATTAGA
Found at i:89810383 original size:27 final size:27
Alignment explanation
Indices: 89810329--89810397 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
89810319 AAATAGCCAA
* * *
89810329 AAAGGTTATCCTTTCATAATTTACCAC
1 AAAGGCTATTCTTTCATAATTCACCAC
**
89810356 AAAGGCTATTCTTTCATAATTCGTCAC
1 AAAGGCTATTCTTTCATAATTCACCAC
89810383 AAAGGCTATTCTTTC
1 AAAGGCTATTCTTTC
89810398 CTGTCATATT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (27 bp):
AAAGGCTATTCTTTCATAATTCACCAC
Found at i:89821006 original size:320 final size:322
Alignment explanation
Indices: 89820411--89821055 Score: 1109
Period size: 320 Copynumber: 2.0 Consensus size: 322
89820401 CGTAGCTCTG
* * *
89820411 ATACCAATAAAATGTAACATCCCTAACCCGTATCCGTCTCTAAAATGGGGTTACGAGACATTACC
1 ATACCAATAAAATATAACACCCCTAACCCGTATCCGTCGCTAAAATGGGGTTACGAGACATTACC
89820476 GGACAAAACACAAATTTCAAACATTCTAATATACATATATGTTGTATCCACATAACTAAAACATG
66 GGACAAAACACAAATTTCAAACATTCTAATATACATATATGTTGTATCCACATAACTAAAACATG
* *
89820541 AATATATTTAAAACGTTAAATACATAATTTAAAAATCATAACACAAATATCAGTGAAAAATTCAA
131 AATATATTTAAAACGTTAAACACATAATTTAAAAATCATAACACAAATATCAATGAAAAATTCAA
89820606 AGTCATTTATAATATACTTTTTAATACATACAAAATTCATGTATTATTATCATTAAAAAAACCTA
196 AGTCATTTATAATATACTTTTTAATACATACAAAATTCATGTATTATTATCATTAAAAAAACCTA
*
89820671 ATACCTCATAAAAATTTCAGCATTTAACATCTCATTTATATACATGTGCTTAATATCCAAGC
261 ATACCTCAGAAAAATTTCAGCATTTAACATCTCATTTATATACATGTGCTTAATATCCAAGC
* * * *
89820733 ATACCTATAAAATATAACACCCCTAACTCGTATCCGTCGCTAGAATGGGGTTACGAGGCATTACC
1 ATACCAATAAAATATAACACCCCTAACCCGTATCCGTCGCTAAAATGGGGTTACGAGACATTACC
* *
89820798 GGACAAAACACAAA-TTCTGAACATTC-ACATATACATATATG-T-TATTCACATAACTAAAACA
66 GGACAAAACACAAATTTC-AAACATTCTA-ATATACATATATGTTGTATCCACATAACTAAAACA
* *
89820859 TGAATCTGTTTAAAACGTTAAACACATAATTTAAAAATCATAACACAAATATCAATGAAAAATTC
129 TGAATATATTTAAAACGTTAAACACATAATTTAAAAATCATAACACAAATATCAATGAAAAATTC
*
89820924 AAAGTCATTTATAATATACTTTTTAATACATACAAAATTCATGTATTATTATCATTAAAGAAACC
194 AAAGTCATTTATAATATACTTTTTAATACATACAAAATTCATGTATTATTATCATTAAAAAAACC
89820989 TAATACCTCAGAAAAATTTCAGCATTTAACATCTCATTTATATACATGTGCTTAATATCCAAGC
259 TAATACCTCAGAAAAATTTCAGCATTTAACATCTCATTTATATACATGTGCTTAATATCCAAGC
89821053 ATA
1 ATA
89821056 TCATACAACA
Statistics
Matches: 306, Mismatches: 15, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
320 209 0.68
321 5 0.02
322 92 0.30
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (322 bp):
ATACCAATAAAATATAACACCCCTAACCCGTATCCGTCGCTAAAATGGGGTTACGAGACATTACC
GGACAAAACACAAATTTCAAACATTCTAATATACATATATGTTGTATCCACATAACTAAAACATG
AATATATTTAAAACGTTAAACACATAATTTAAAAATCATAACACAAATATCAATGAAAAATTCAA
AGTCATTTATAATATACTTTTTAATACATACAAAATTCATGTATTATTATCATTAAAAAAACCTA
ATACCTCAGAAAAATTTCAGCATTTAACATCTCATTTATATACATGTGCTTAATATCCAAGC
Found at i:89828903 original size:43 final size:43
Alignment explanation
Indices: 89828849--89829332 Score: 199
Period size: 42 Copynumber: 11.4 Consensus size: 43
89828839 ATTTTCGTAA
* *
89828849 AAGACCCTGTCTAGGACAGAGGCAACGATACTGAAATATGTGT
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAAATATGTGT
** * * * * **
89828892 AAGACCATGTCTGGGACATCGGCATCG-TATCT--ATTTTCATAA
1 AAGACCATGTCTGGGACAGAGGCAACGATA-CTGAAATAT-GTGT
*
89828934 AAGACCCTGTCTGGGACAGAGGCAACGATACTGAAATATGTGT
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAAATATGTGT
** * * * * **
89828977 AAGACCATGTCTGGGACATCGGTATCG-TATCTG--TTTTCGTAA
1 AAGACCATGTCTGGGACAGAGGCAACGATA-CTGAAATAT-GTGT
* * *
89829019 AAGACCCTGTCTAGGACAGAGGCAACGATACTGAAATACGTGT
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAAATATGTGT
** * * * * **
89829062 AAGACCATGTCTGGGACATCGACATCG-TATCTG--TTTTCGTAA
1 AAGACCATGTCTGGGACAGAGGCAACGATA-CTGAAATAT-GTGT
* * * * * *
89829104 AAGCCCCTATCTAGGACAGA-GCAACGATACTAAAATACGTGT
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAAATATGTGT
* ** * * * * **
89829146 AAGACCATGTTTGGGACATCGACATCG-TATCT--ATTTTCGTAA
1 AAGACCATGTCTGGGACAGAGGCAACGATA-CTGAAATAT-GTGT
* * * * *
89829188 AAGACCCTGTCTGGGATACAGGCAATGATACTGAAATACGTGT
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAAATATGTGT
** * * * *
89829231 AAGACCATGTCTGGGACATCGGTATCG-TATCTG-TAT-TCGTAT
1 AAGACCATGTCTGGGACAGAGGCAACGATA-CTGAAATAT-GTGT
* ** * * **
89829273 AAGACCCTGTCTATGACAGAGGCATCGATACTGAATTACATGT
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAAATATGTGT
89829316 AAGACCATGTCTGGGAC
1 AAGACCATGTCTGGGAC
89829333 GTCAGCATTG
Statistics
Matches: 300, Mismatches: 115, Indels: 52
0.64 0.25 0.11
Matches are distributed among these distances:
41 14 0.05
42 147 0.49
43 133 0.44
44 6 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (43 bp):
AAGACCATGTCTGGGACAGAGGCAACGATACTGAAATATGTGT
Found at i:89828919 original size:85 final size:85
Alignment explanation
Indices: 89828800--89829332 Score: 834
Period size: 85 Copynumber: 6.3 Consensus size: 85
89828790 TGATCTAAAT
89828800 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
89828865 CAGAGGCAACGATACTGAAA
66 CAGAGGCAACGATACTGAAA
* * *
89828885 TATGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCATAAAAGACCCTGTCTGGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
89828950 CAGAGGCAACGATACTGAAA
66 CAGAGGCAACGATACTGAAA
* * *
89828970 TATGTGTAAGACCATGTCTGGGACATCGGTATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
89829035 CAGAGGCAACGATACTGAAA
66 CAGAGGCAACGATACTGAAA
* * * *
89829055 TACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTGTTTTCGTAAAAGCCCCTATCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
*
89829120 CAGA-GCAACGATACTAAAA
66 CAGAGGCAACGATACTGAAA
* * *
89829139 TACGTGTAAGACCATGTTTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCCTGTCTGGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
* * *
89829204 TACAGGCAATGATACTGAAA
66 CAGAGGCAACGATACTGAAA
* * * * *
89829224 TACGTGTAAGACCATGTCTGGGACATCGGTATCGTATCTGTATTCGTATAAGACCCTGTCTATGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
* *
89829289 CAGAGGCATCGATACTGAAT
66 CAGAGGCAACGATACTGAAA
*
89829309 TACATGTAAGACCATGTCTGGGAC
1 TACGTGTAAGACCATGTCTGGGAC
89829333 GTCAGCATTG
Statistics
Matches: 411, Mismatches: 36, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
84 76 0.18
85 335 0.82
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (85 bp):
TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
CAGAGGCAACGATACTGAAA
Found at i:89829250 original size:254 final size:255
Alignment explanation
Indices: 89828800--89829332 Score: 888
Period size: 254 Copynumber: 2.1 Consensus size: 255
89828790 TGATCTAAAT
* *
89828800 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCCTATCTAGGA
* * *
89828865 CAGAGGCAACGATACTGAAATATGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTC
66 CAGAGGCAACGATACTAAAATACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTC
* *
89828930 ATAAAAGACCCTGTCTGGGACAGAGGCAACGATACTGAAATATGTGTAAGACCATGTCTGGGACA
131 ATAAAAGACCCTGTCTGGGACACAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGACA
*
89828995 TCGGTATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGACAGAGGCAACGATACTGAAA
196 TCGGTATCGTATCTGTATTCGTAAAAGACCCTGTCTAGGACAGAGGCAACGATACTGAAA
* *
89829055 TACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTGTTTTCGTAAAAGCCCCTATCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCCTATCTAGGA
*
89829120 CAGA-GCAACGATACTAAAATACGTGTAAGACCATGTTTGGGACATCGACATCGTATCTATTTTC
66 CAGAGGCAACGATACTAAAATACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTC
* * *
89829184 GTAAAAGACCCTGTCTGGGATACAGGCAATGATACTGAAATACGTGTAAGACCATGTCTGGGACA
131 ATAAAAGACCCTGTCTGGGACACAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGACA
* * * *
89829249 TCGGTATCGTATCTGTATTCGTATAAGACCCTGTCTATGACAGAGGCATCGATACTGAAT
196 TCGGTATCGTATCTGTATTCGTAAAAGACCCTGTCTAGGACAGAGGCAACGATACTGAAA
*
89829309 TACATGTAAGACCATGTCTGGGAC
1 TACGTGTAAGACCATGTCTGGGAC
89829333 GTCAGCATTG
Statistics
Matches: 259, Mismatches: 19, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
254 194 0.75
255 65 0.25
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (255 bp):
TACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCCTATCTAGGA
CAGAGGCAACGATACTAAAATACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTC
ATAAAAGACCCTGTCTGGGACACAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGACA
TCGGTATCGTATCTGTATTCGTAAAAGACCCTGTCTAGGACAGAGGCAACGATACTGAAA
Found at i:89829873 original size:12 final size:13
Alignment explanation
Indices: 89829856--89829887 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
89829846 GCAAATGTTA
89829856 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
89829868 AGTTTTGATGCAT
1 AGTTTTGATGCAT
89829881 -GTTTTGA
1 AGTTTTGA
89829888 AATGTGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:89833157 original size:17 final size:17
Alignment explanation
Indices: 89833135--89833168 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
89833125 TACGACAGAG
*
89833135 AAGATGGTTAGAACTGT
1 AAGATGGTCAGAACTGT
89833152 AAGATGGTCAGAACTGT
1 AAGATGGTCAGAACTGT
89833169 TAAAAGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.26
Consensus pattern (17 bp):
AAGATGGTCAGAACTGT
Found at i:89836039 original size:85 final size:85
Alignment explanation
Indices: 89835896--89836053 Score: 235
Period size: 85 Copynumber: 1.9 Consensus size: 85
89835886 TGGTATTGAT
* * * **
89835896 CTGAATTACGTGTAAGATCATGTCTGGGACATTGGCATCGTATATGTTTTTGTAAAAGACCCTAT
1 CTGAAATACGTGTAAGACCATGTCTGGGACACTGGCATCGTATATGTTTTCATAAAAGACCCTAT
89835961 CTGGGACAGAGGCAACGATA
66 CTGGGACAGAGGCAACGATA
** * *
89835981 CTGAAATACGTGTAAGACCATGTCTGGGATGCTGGCATCGTATCTGTTTTCATAAAAGACCCTGT
1 CTGAAATACGTGTAAGACCATGTCTGGGACACTGGCATCGTATATGTTTTCATAAAAGACCCTAT
89836046 CTGGGACA
66 CTGGGACA
89836054 TCGGCATCGT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 64 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (85 bp):
CTGAAATACGTGTAAGACCATGTCTGGGACACTGGCATCGTATATGTTTTCATAAAAGACCCTAT
CTGGGACAGAGGCAACGATA
Found at i:89836125 original size:85 final size:85
Alignment explanation
Indices: 89836036--89836463 Score: 615
Period size: 85 Copynumber: 5.0 Consensus size: 85
89836026 GTTTTCATAA
* * *
89836036 AAGACCCTGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTGTTTGGGACAGAGGC
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGC
89836101 AACGATACTGAAATACGTGT
66 AACGATACTGAAATACGTGT
* *
89836121 AAGACCATGTCTGGGACATTGGCATCGTATCTGTTTTCATAAAAGACCCTGTCTGGGACAGAGGC
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGC
*
89836186 AACGATACTGAAGTACGTGT
66 AACGATACTGAAATACGTGT
* * *
89836206 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGCCCCTATCTAGGACAGA-GC
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGC
*
89836270 AACGATACTAAAATACGTGT
66 AACGATACTGAAATACGTGT
* * * * **
89836290 AAGACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCCTGTTTGGGATACTGGC
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGC
*
89836355 AATGATACTGAAATACGTGT
66 AACGATACTGAAATACGTGT
* * * * **
89836375 AAGACCATGTCTGGGACATCGGTATCGTATCTGTATTCGTATAAGACCCTATCTATGACAGAGGC
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGC
* * *
89836440 ATCGATACTGAATTACATGT
66 AACGATACTGAAATACGTGT
89836460 AAGA
1 AAGA
89836464 TTGGAACCAT
Statistics
Matches: 302, Mismatches: 40, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
84 73 0.24
85 229 0.76
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (85 bp):
AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGC
AACGATACTGAAATACGTGT
Found at i:89836144 original size:127 final size:127
Alignment explanation
Indices: 89835916--89836424 Score: 472
Period size: 127 Copynumber: 4.0 Consensus size: 127
89835906 TGTAAGATCA
* * *
89835916 TGTCTGGGACATTGGCATCGTATATGTTTTTGTAAAAGACCCTATCTGGGACAGAGGCAACGATA
1 TGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGCAACGATA
*** *
89835981 CTGAAATACGTGTAAGACCATGTCTGGGATGCTGGCATCGTATCTGTTTTCATAAAAGACCC
66 CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGTATTCATAAAAGACCC
*
89836043 TGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTGTTTGGGACAGAGGCAACGATA
1 TGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGCAACGATA
*
89836108 CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGTTTTCATAAAAGACCC
66 CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGTATTCATAAAAGACCC
** * ** * ** * ** *
89836170 TGTCTGGGACAGAGGCAACG-ATACTGAAGTACGTGTAAGACCATGTCTGGGACATCGGCATCG-
1 TGTCTGGGACATCGGCATCGTATA-TG-TTTTCGTAAAAGACCCTGTCTGGGACAGAGGCAACGA
** * ** * * * * * ** * * **
89836233 TATCTG-TTTTCGTAAAAGCCCCTATCTAGGACA--GAGCAACG-ATACTAAAATACGTGTAAGA
64 TA-CTGAAATACGTGTAAGACCATGTCTGGGACATTG-GCATCGTAT-CT-GTATTCATAAAAGA
*
89836294 CCA
125 CCC
* * * * * ** *
89836297 TGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCCTGTTTGGGATACTGGCAATGATA
1 TGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGCAACGATA
* * * *
89836362 CTGAAATACGTGTAAGACCATGTCTGGGACATCGGTATCGTATCTGTATTCGTATAAGACCC
66 CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGTATTCATAAAAGACCC
89836424 T
1 T
89836425 ATCTATGACA
Statistics
Matches: 298, Mismatches: 72, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
125 3 0.01
126 37 0.12
127 218 0.73
128 37 0.12
129 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (127 bp):
TGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTGTCTGGGACAGAGGCAACGATA
CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGTATTCATAAAAGACCC
Found at i:89836305 original size:169 final size:170
Alignment explanation
Indices: 89836036--89836463 Score: 633
Period size: 169 Copynumber: 2.5 Consensus size: 170
89836026 GTTTTCATAA
* * * * *
89836036 AAGACCCTGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTGTTTGGGACAGAGGC
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTATCTAGGACAGAGGC
* * *
89836101 AACGATACTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGTTTTCATAAAAG
66 AACGATACTGAAATACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCATAAAAG
* *
89836166 ACCCTGTCTGGGACAGAGGCAACGATACTGAAGTACGTGT
131 ACCCTGTCTGGGACACAGGCAACGATACTGAAATACGTGT
*
89836206 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGCCCCTATCTAGGACAGA-GC
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTATCTAGGACAGAGGC
* *
89836270 AACGATACTAAAATACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAG
66 AACGATACTGAAATACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCATAAAAG
* * * *
89836335 ACCCTGTTTGGGATACTGGCAATGATACTGAAATACGTGT
131 ACCCTGTCTGGGACACAGGCAACGATACTGAAATACGTGT
* * * *
89836375 AAGACCATGTCTGGGACATCGGTATCGTATCTGTATTCGTATAAGACCCTATCTATGACAGAGGC
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTATCTAGGACAGAGGC
* * *
89836440 ATCGATACTGAATTACATGTAAGA
66 AACGATACTGAAATACGTGTAAGA
89836464 TTGGAACCAT
Statistics
Matches: 231, Mismatches: 26, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
169 153 0.66
170 78 0.34
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (170 bp):
AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTATCTAGGACAGAGGC
AACGATACTGAAATACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCATAAAAG
ACCCTGTCTGGGACACAGGCAACGATACTGAAATACGTGT
Found at i:89836307 original size:212 final size:211
Alignment explanation
Indices: 89835896--89836307 Score: 562
Period size: 212 Copynumber: 1.9 Consensus size: 211
89835886 TGGTATTGAT
* * **
89835896 CTGAATTACGTGTAAGATCATGTCTGGGACATTGGCATCGTATATGTTTTTGTAAAAGACCCTAT
1 CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGTTTTCATAAAAGACCCTAT
89835961 CTGGGACAGAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGATGCTGGCATCGTATCT
66 CTGGGACAGAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGATGCTGGCATCGTATCT
* * * *** * * *
89836026 GTTTTCATAAAAGACCCTGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTGTTTG
131 GTTTTCATAAAAGACCCTATCTAGGACA-CGGCAACGTATATAAATACGTAAAAGACCATGTCTG
89836091 GGACAGAGGCAACGATA
195 GGACAGAGGCAACGATA
* *
89836108 CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGTTTTCATAAAAGACCCTGT
1 CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGTTTTCATAAAAGACCCTAT
*
89836173 CTGGGACAGAGGCAACGATACTGAAGTACGTGTAAGACCATGTCTGGGA--CATCGGCATCGTAT
66 CTGGGACAGAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGATGC-T-GGCATCGTAT
* * **
89836236 CTGTTTTCGTAAAAGCCCCTATCTAGGACA-GAGCAACG-ATACTAAAATACGTGTAAGACCATG
129 CTGTTTTCATAAAAGACCCTATCTAGGACACG-GCAACGTATA-T-AAATACGTAAAAGACCATG
89836299 TCTGGGACA
191 TCTGGGACA
89836308 TCGACATCGT
Statistics
Matches: 175, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
210 5 0.03
211 7 0.04
212 163 0.93
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (211 bp):
CTGAAATACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGTTTTCATAAAAGACCCTAT
CTGGGACAGAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGATGCTGGCATCGTATCT
GTTTTCATAAAAGACCCTATCTAGGACACGGCAACGTATATAAATACGTAAAAGACCATGTCTGG
GACAGAGGCAACGATA
Found at i:89836337 original size:42 final size:42
Alignment explanation
Indices: 89835916--89836347 Score: 232
Period size: 42 Copynumber: 10.2 Consensus size: 42
89835906 TGTAAGATCA
* * * *
89835916 TGTCTGGGACATTGGCATCGTATATGTTTTTGTAAAAGACCC
1 TGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCC
* ** * ** * ** *
89835958 TATCTGGGACAGAGGCAACG-ATACTGAAATACGTGTAAGACCA
1 TGTCTGGGACATCGGCATCGTAT-CT-ATTTTCGTAAAAGACCC
* *
89836001 TGTCTGGG--ATGCTGGCATCGTATCTGTTTTCATAAAAGACCC
1 TGTCTGGGACAT-C-GGCATCGTATCTATTTTCGTAAAAGACCC
* *
89836043 TGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCC
1 TGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCC
* ** * ** * ** *
89836085 TGTTTGGGACAGAGGCAACG-ATACTGAAATACGTGTAAGACCA
1 TGTCTGGGACATCGGCATCGTAT-CT-ATTTTCGTAAAAGACCC
* * *
89836128 TGTCTGGGACATTGGCATCGTATCTGTTTTCATAAAAGACCC
1 TGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCC
** * ** * ** *
89836170 TGTCTGGGACAGAGGCAACG-ATACTGAAGTACGTGTAAGACCA
1 TGTCTGGGACATCGGCATCGTAT-CT-ATTTTCGTAAAAGACCC
* *
89836213 TGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGCCCC
1 TGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCC
* * * ** * ** *
89836255 TATCTAGGACA--GAGCAACG-ATACTAAAATACGTGTAAGACCA
1 TGTCTGGGACATCG-GCATCGTAT-CT-ATTTTCGTAAAAGACCC
*
89836297 TGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCC
1 TGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCC
*
89836339 TGTTTGGGA
1 TGTCTGGGA
89836348 TACTGGCAAT
Statistics
Matches: 276, Mismatches: 95, Indels: 38
0.67 0.23 0.09
Matches are distributed among these distances:
40 3 0.01
41 14 0.05
42 161 0.58
43 87 0.32
44 11 0.04
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTCTGGGACATCGGCATCGTATCTATTTTCGTAAAAGACCC
Found at i:89838179 original size:39 final size:40
Alignment explanation
Indices: 89838078--89838214 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
89838068 TTGAATGATA
* *
89838078 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
89838117 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
89838158 TCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
89838197 TCCGGGTTAAGTCCCGAA
1 TCCGGGCTAAGTCCCGAA
89838215 ATCCGGGTTA
Statistics
Matches: 83, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
39 34 0.41
40 36 0.43
41 12 0.14
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:89838218 original size:19 final size:19
Alignment explanation
Indices: 89838194--89838233 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
89838184 GTGAGTTACT
89838194 AAATCCGGGTTAAGTCCCG
1 AAATCCGGGTTAAGTCCCG
89838213 AAATCCGGGTTAAGTCCCG
1 AAATCCGGGTTAAGTCCCG
89838232 AA
1 AA
89838234 GGCATTTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (19 bp):
AAATCCGGGTTAAGTCCCG
Found at i:89838249 original size:59 final size:58
Alignment explanation
Indices: 89838158--89838273 Score: 171
Period size: 59 Copynumber: 2.0 Consensus size: 58
89838148 AGATACTAAT
* *
89838158 TCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTA-AATCCGGGTTAAGTCCCGAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAA
* *
89838216 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAA
89838274 GGCATTTGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 10 0.19
59 40 0.77
60 2 0.04
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (58 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAA
Found at i:89838312 original size:98 final size:98
Alignment explanation
Indices: 89838131--89838312 Score: 235
Period size: 98 Copynumber: 1.9 Consensus size: 98
89838121 GGACTAAGAT
* ***
89838131 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
89838196 ATCCGGGTTAAGTCCCGAAATCCGGGTTAAGTC
66 ATCCGGGTTAAATCCCGAAATCCGGGTTAAGTC
* *
89838229 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
89838292 TATATCC-GGTTAAATTCCGAA
63 TAAATCCGGGTTAAATCCCGAA
89838313 GGTACGTGAT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
97 2 0.03
98 46 0.64
99 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (98 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATCCCGAAATCCGGGTTAAGTC
Found at i:89848239 original size:46 final size:45
Alignment explanation
Indices: 89848172--89848347 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
89848162 TATTTGGGCA
89848172 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** *
89848218 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGCTGTAACTA-G-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC---A-CT-TATGGATGCGAAG
* * *
89848265 TCCCAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AAG
* * *
89848311 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89848348 GCAGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 2 0.02
44 2 0.02
45 1 0.01
46 63 0.59
47 27 0.25
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:89848327 original size:93 final size:93
Alignment explanation
Indices: 89848168--89848339 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
89848158 AGAATATTTG
* * * * *
89848168 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAAGCCCGAACTCATTGAG
89848233 TTGAGTCCGAGTTCGAGAGCTGTAACTA
66 TTGAGTCCGAGTTCGAGAGCTGTAACTA
* *
89848261 GGCATCCCAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAAGCCCGAGCTCATTGAG
1 GGCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAAGCCCGAACTCATTGAG
89848326 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
89848340 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAAGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGCTGTAACTA
Found at i:89851923 original size:27 final size:26
Alignment explanation
Indices: 89851906--89851975 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
89851896 ATATTAAGTC
89851906 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
89851933 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
89851961 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
89851976 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:89851969 original size:28 final size:28
Alignment explanation
Indices: 89851906--89852003 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
89851896 ATATTAAGTC
*
89851906 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
89851933 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
89851961 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
89851990 CGCACACTTAGTGC
1 CGCACACTTAGTGC
89852004 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Done.