Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 271 of 316
Found at i:89854815 original size:14 final size:15
Alignment explanation
Indices: 89854762--89854815 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
89854752 TATCGTATCT
*
89854762 TGGGTTTCTTTATCC
1 TGGGTTTCTTTATTC
* *
89854777 TGGATCTCTTTATTC
1 TGGGTTTCTTTATTC
89854792 TGGGTTTCTTTATT-
1 TGGGTTTCTTTATTC
*
89854806 TGGTTTTCTT
1 TGGGTTTCTT
89854816 GTTATCTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 9 0.27
15 24 0.73
ACGTcount: A:0.07, C:0.15, G:0.19, T:0.59
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:89859309 original size:43 final size:42
Alignment explanation
Indices: 89859169--89859323 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
89859159 ATATCGTATA
* * *
89859169 ATGCCAACGTCCCAGACGTGGTCTTACATGCT-ATCTAATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAATC-AATATCG
* * *
89859212 ATGCC-ACTGTCTCAGATAGGGTCTTACACG-AATCAA-ATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAATAT-CG
* *
89859253 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCA-ATATCG
* *
89859296 ATGCCAACATCCCAGATATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
89859324 TGAGAACACA
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
40 2 0.02
41 27 0.30
42 11 0.12
43 49 0.54
44 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAATATCG
Found at i:89861748 original size:3 final size:3
Alignment explanation
Indices: 89861740--89861766 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
89861730 TGCAATCTAA
89861740 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
89861767 GCATATGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:89867441 original size:43 final size:43
Alignment explanation
Indices: 89867379--89867517 Score: 188
Period size: 43 Copynumber: 3.2 Consensus size: 43
89867369 CAAACTGGAG
*
89867379 CATGACCTTTAGCGGCGCTTTTCCCATAAACGCCGCTAAAAAA
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAAA
* * * *
89867422 CATGACCTTTAGCGACGCTTTTCCCACAGACGCCACTAAAGAA
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAAA
* * * * *
89867465 CATGACTTTTAACGGCACTTTTCTCACAAACGCCGCTAAAAAT
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAAA
89867508 CATGACCTTT
1 CATGACCTTT
89867518 TAAAAAATTA
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 81 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAAA
Found at i:89869087 original size:26 final size:25
Alignment explanation
Indices: 89869033--89869121 Score: 80
Period size: 25 Copynumber: 3.6 Consensus size: 25
89869023 TATATATATC
89869033 ATTTAT-T-TATT-TTAAAAA-ACT
1 ATTTATATATATTATTAAAAATACT
**
89869054 ATACATATATCATTATTAAAAATACT
1 ATTTATATAT-ATTATTAAAAATACT
**
89869080 ATTTATATAT-TTATATAAAAATTTT
1 ATTTATATATATTAT-TAAAAATACT
89869105 ATTTATCATATATTATT
1 ATTTAT-ATATATTATT
89869122 TTCCTATATA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
21 4 0.07
22 1 0.02
23 1 0.02
24 7 0.13
25 21 0.39
26 16 0.30
27 4 0.07
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTTATATATATTATTAAAAATACT
Found at i:89869149 original size:10 final size:10
Alignment explanation
Indices: 89869134--89869195 Score: 54
Period size: 10 Copynumber: 5.8 Consensus size: 10
89869124 CCTATATATA
89869134 TATTATATTT
1 TATTATATTT
89869144 TATTATATAACATT
1 TATTATAT----TT
89869158 TATTATATTT
1 TATTATATTT
*
89869168 TATTATATAT
1 TATTATATTT
89869178 TACTTAT-TTT
1 TA-TTATATTT
*
89869188 TTTTATAT
1 TATTATAT
89869196 ATGTTATGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
9 4 0.09
10 25 0.58
11 4 0.09
14 10 0.23
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (10 bp):
TATTATATTT
Found at i:89869150 original size:19 final size:19
Alignment explanation
Indices: 89869100--89869202 Score: 68
Period size: 20 Copynumber: 5.0 Consensus size: 19
89869090 TTATATAAAA
89869100 ATTTTATTTATCATATATTAT
1 ATTTTA-TTAT-ATATATTAT
89869121 -TTTCCTA-TATATATATTAT
1 ATTT--TATTATATATATTAT
89869140 ATTTTATTATATAACATTTATTAT
1 ATTTTATTATAT---A--TATTAT
89869164 ATTTTATTATATATTACTTAT
1 ATTTTATTATATA-TA-TTAT
* *
89869185 -TTTTTTTATATATGTTAT
1 ATTTTATTATATATATTAT
89869203 GTATATCGTA
Statistics
Matches: 70, Mismatches: 2, Indels: 23
0.74 0.02 0.24
Matches are distributed among these distances:
18 6 0.09
19 15 0.21
20 23 0.33
21 5 0.07
22 3 0.04
24 18 0.26
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (19 bp):
ATTTTATTATATATATTAT
Found at i:89869184 original size:24 final size:24
Alignment explanation
Indices: 89869134--89869197 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 24
89869124 CCTATATATA
*
89869134 TATTATATTTTATTATATAACATT
1 TATTATATTTTATTATATAACACT
**
89869158 TATTATATTTTATTATATATTACT
1 TATTATATTTTATTATATAACACT
*
89869182 TATT-TTTTTTA-TATAT
1 TATTATATTTTATTATAT
89869198 GTTATGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.14
23 6 0.17
24 25 0.69
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (24 bp):
TATTATATTTTATTATATAACACT
Found at i:89869442 original size:19 final size:19
Alignment explanation
Indices: 89869418--89869495 Score: 52
Period size: 19 Copynumber: 4.0 Consensus size: 19
89869408 TTTTACATAC
89869418 TTTTTATTTTATATATTAT
1 TTTTTATTTTATATATTAT
**** *
89869437 TTTTTAACCAATATATTTT
1 TTTTTATTTTATATATTAT
*
89869456 ATTTTTA-TATATAATTATTAT
1 -TTTTTATTTTAT-A-TATTAT
89869477 TTTTT-TTATTATATATTAT
1 TTTTTATT-TTATATATTAT
89869496 ATATTATATA
Statistics
Matches: 44, Mismatches: 10, Indels: 10
0.69 0.16 0.16
Matches are distributed among these distances:
19 22 0.50
20 14 0.32
21 8 0.18
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTATTTTATATATTAT
Found at i:89869482 original size:22 final size:23
Alignment explanation
Indices: 89869447--89869500 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
89869437 TTTTTAACCA
89869447 ATATATTTTATTTT-TATATATAATT
1 ATATATTTT-TTTTAT-TATAT-ATT
89869472 AT-TATTTTTTTTATTATATATT
1 ATATATTTTTTTTATTATATATT
89869494 ATATATT
1 ATATATT
89869501 ATATATTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 5 0.19
23 13 0.48
24 7 0.26
25 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
ATATATTTTTTTTATTATATATT
Found at i:89869495 original size:7 final size:7
Alignment explanation
Indices: 89869483--89869508 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
89869473 TTATTTTTTT
89869483 TATTATA
1 TATTATA
89869490 TATTATA
1 TATTATA
89869497 TATTATA
1 TATTATA
89869504 TATTA
1 TATTA
89869509 AATACTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TATTATA
Found at i:89869533 original size:25 final size:28
Alignment explanation
Indices: 89869498--89869548 Score: 81
Period size: 25 Copynumber: 1.9 Consensus size: 28
89869488 TATATTATAT
89869498 ATTATATATTAAATA-C-TATTTTTAAA
1 ATTATATATTAAATATCATATTTTTAAA
89869524 ATTAT-TATTAAATATCATATTTTTA
1 ATTATATATTAAATATCATATTTTTA
89869549 TTTGTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 6 0.26
27 8 0.35
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (28 bp):
ATTATATATTAAATATCATATTTTTAAA
Found at i:89872322 original size:15 final size:16
Alignment explanation
Indices: 89872296--89872326 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
89872286 TCTCTCTTGC
89872296 TTTTAGATCATATATA
1 TTTTAGATCATATATA
89872312 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
89872327 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:89874847 original size:3 final size:3
Alignment explanation
Indices: 89874839--89874872 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
89874829 ACTAAAAGAA
89874839 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
89874873 GCAAAGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:89875552 original size:72 final size:73
Alignment explanation
Indices: 89875429--89875578 Score: 198
Period size: 72 Copynumber: 2.1 Consensus size: 73
89875419 TTCGGGTATA
* * * *
89875429 AAATAGAAGAACAGGTTGAGAAAGGCTGAGAAAGAAAAGGGAATTAGGAAAGAAAAGGGAA-TCG
1 AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATGAGGAAAGAAAAAGCAATTCG
89875493 GGGGAGAG
66 GGGGAGAG
* *
89875501 AAATAGAAGTACAGGCTGAGAATGGCTGAGAAAG-AAAGTGGAATCGA-GAAAGAAAAAGCAATT
1 AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAG-GGAAT-GAGGAAAGAAAAAGCAATT
*
89875564 GGGGGGAGAG
64 CGGGGGAGAG
89875574 AAATA
1 AAATA
89875579 AAACGGCATC
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
71 4 0.06
72 48 0.71
73 16 0.24
ACGTcount: A:0.48, C:0.05, G:0.35, T:0.11
Consensus pattern (73 bp):
AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATGAGGAAAGAAAAAGCAATTCG
GGGGAGAG
Found at i:89876054 original size:7 final size:7
Alignment explanation
Indices: 89876042--89876169 Score: 50
Period size: 7 Copynumber: 18.0 Consensus size: 7
89876032 ACTAATTAAT
89876042 CTAAACC
1 CTAAACC
89876049 CTAAACC
1 CTAAACC
*
89876056 CTTAACTC
1 CTAAAC-C
*
89876064 CT-ATCC
1 CTAAACC
89876070 CTTAAACC
1 C-TAAACC
* *
89876078 TTAAATC
1 CTAAACC
*
89876085 ATACAA-C
1 CTA-AACC
*
89876092 ATAAACC
1 CTAAACC
*
89876099 CT-AAGC
1 CTAAACC
*
89876105 CGATAACC
1 CTA-AACC
*
89876113 CTTAACC
1 CTAAACC
89876120 C-ATAACAC
1 CTA-AAC-C
89876128 CTAAACC
1 CTAAACC
*
89876135 TTAAACC
1 CTAAACC
89876142 CT-AACC
1 CTAAACC
89876148 CTTAAACC
1 C-TAAACC
*
89876156 ATAAACC
1 CTAAACC
*
89876163 ATAAACC
1 CTAAACC
89876170 ATAATCATTA
Statistics
Matches: 93, Mismatches: 16, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
6 13 0.14
7 58 0.62
8 21 0.23
9 1 0.01
ACGTcount: A:0.41, C:0.36, G:0.02, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:89876170 original size:7 final size:7
Alignment explanation
Indices: 89876072--89876273 Score: 79
Period size: 7 Copynumber: 28.4 Consensus size: 7
89876062 TCCTATCCCT
*
89876072 TAAACCT
1 TAAACCA
*
89876079 TAAATCA
1 TAAACCA
89876086 TACAA-CA
1 TA-AACCA
*
89876093 TAAACCC
1 TAAACCA
*
89876100 TAAGCCGA
1 TAAACC-A
* *
89876108 TAACCCT
1 TAAACCA
*
89876115 TAACCCA
1 TAAACCA
89876122 TAACACC-
1 TAA-ACCA
*
89876129 TAAACCT
1 TAAACCA
*
89876136 TAAACCC
1 TAAACCA
* *
89876143 TAACCCT
1 TAAACCA
89876150 TAAACCA
1 TAAACCA
89876157 TAAACCA
1 TAAACCA
89876164 TAAACCA
1 TAAACCA
*
89876171 T-AATCA
1 TAAACCA
89876177 TTAAACCCA
1 -TAAA-CCA
*
89876186 TAATCCA
1 TAAACCA
*
89876193 TAATCCA
1 TAAACCA
*
89876200 TAAACCT
1 TAAACCA
**
89876207 TAAAATA
1 TAAACCA
* *
89876214 GAAACTCC
1 TAAAC-CA
*
89876222 TAAACCT
1 TAAACCA
*
89876229 TAAACCC
1 TAAACCA
*
89876236 TAAACTA
1 TAAACCA
* *
89876243 TATACCC
1 TAAACCA
*
89876250 TAAGCCA
1 TAAACCA
89876257 TAAATCC-
1 TAAA-CCA
*
89876264 TAAACTA
1 TAAACCA
89876271 TAA
1 TAA
89876274 TGATAATTAA
Statistics
Matches: 145, Mismatches: 39, Indels: 22
0.70 0.19 0.11
Matches are distributed among these distances:
6 10 0.07
7 113 0.78
8 20 0.14
9 2 0.01
ACGTcount: A:0.46, C:0.30, G:0.02, T:0.22
Consensus pattern (7 bp):
TAAACCA
Found at i:89876203 original size:22 final size:20
Alignment explanation
Indices: 89876154--89876205 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
89876144 AACCCTTAAA
89876154 CCATAAACCATAAACCATAAT
1 CCATAAACCAT-AACCATAAT
89876175 -CATTAAACCCATAATCCATAAT
1 CCA-TAAA-CCATAA-CCATAAT
89876197 CCATAAACC
1 CCATAAACC
89876206 TTAAAATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
20 2 0.07
21 8 0.30
22 15 0.56
23 2 0.07
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (20 bp):
CCATAAACCATAACCATAAT
Found at i:89876209 original size:29 final size:28
Alignment explanation
Indices: 89876129--89876273 Score: 94
Period size: 29 Copynumber: 5.1 Consensus size: 28
89876119 CCATAACACC
* * *
89876129 TAAACCTTAAACCCTAACCCTTAAACCA
1 TAAACCATAAACCATAAACCTTAAACCA
* *
89876157 TAAACCATAAACCATAATCATTAAACCCA
1 TAAACCATAAACCATAAACCTTAAA-CCA
* * **
89876186 TAATCCATAATCCATAAACCTTAAAATA
1 TAAACCATAAACCATAAACCTTAAACCA
* * * * *
89876214 GAAACTCCTAAACCTTAAACCCTAAACTA
1 TAAAC-CATAAACCATAAACCTTAAACCA
* * * *
89876243 TATACCCTAAGCCATAAATCC-TAAACTA
1 TAAACCATAAACCATAAA-CCTTAAACCA
89876271 TAA
1 TAA
89876274 TGATAATTAA
Statistics
Matches: 92, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
28 45 0.49
29 47 0.51
ACGTcount: A:0.47, C:0.28, G:0.01, T:0.23
Consensus pattern (28 bp):
TAAACCATAAACCATAAACCTTAAACCA
Found at i:89876641 original size:40 final size:40
Alignment explanation
Indices: 89876576--89876733 Score: 235
Period size: 40 Copynumber: 4.0 Consensus size: 40
89876566 AAATATATTT
89876576 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
* * * *
89876616 AAAATCGCCCCTAATGTTCGATCTATAGCGGCGATTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
*
89876656 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
* * * *
89876696 GATAGCACCGCTAATGCTTGATCTATAGCGGCGTTTTT
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTT
89876734 TATCCAAACG
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
Found at i:89883386 original size:26 final size:26
Alignment explanation
Indices: 89883348--89883457 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
89883338 CATGAAATTC
*
89883348 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
89883374 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
89883400 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
89883426 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
89883452 TTATCA
1 TTATCA
89883458 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:89911475 original size:33 final size:34
Alignment explanation
Indices: 89911388--89911489 Score: 97
Period size: 33 Copynumber: 3.1 Consensus size: 34
89911378 TTTTGCATTT
89911388 CTGATACTG-TACTAGT-TGGGCTAAGGCCCACA
1 CTGATACTGCTACTAGTATGGGCTAAGGCCCACA
* * * *
89911420 CAGTTACTACTACT-GTAGTGGGCTAAGGCCC-CC
1 CTGATACTGCTACTAGTA-TGGGCTAAGGCCCACA
* *
89911453 CTGATATTGCTACTAGTATGGGCTCAA-GCCCAAA
1 CTGATACTGCTACTAGTATGGGCT-AAGGCCCACA
89911487 CTG
1 CTG
89911490 CTCAACACTG
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
32 8 0.15
33 25 0.46
34 21 0.39
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (34 bp):
CTGATACTGCTACTAGTATGGGCTAAGGCCCACA
Found at i:89917551 original size:27 final size:27
Alignment explanation
Indices: 89917520--89917697 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
89917510 TAAATTGTAC
89917520 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
89917547 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
89917573 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
89917601 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
89917629 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
89917656 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
89917683 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
89917698 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:89917634 original size:82 final size:81
Alignment explanation
Indices: 89917521--89917676 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
89917511 AAATTGTACA
* *
89917521 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
89917585 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
89917602 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
89917667 TGCGAGTTGA
65 TGCGAATTGA
89917677 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:89917688 original size:82 final size:81
Alignment explanation
Indices: 89917517--89917697 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
89917507 GATTAAATTG
* *
89917517 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
89917582 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
89917598 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
89917662 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
89917680 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
89917698 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:89925485 original size:22 final size:22
Alignment explanation
Indices: 89925457--89925578 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
89925447 TTCCACACCC
89925457 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
89925479 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
89925503 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
89925526 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
89925550 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
89925573 ATCACA
1 ATCACA
89925579 CATACTCATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:89925841 original size:49 final size:47
Alignment explanation
Indices: 89925429--89925981 Score: 756
Period size: 47 Copynumber: 11.6 Consensus size: 47
89925419 CCCTTCGGGA
* * **
89925429 CTTATCACATTTATACACTTCCACACCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
89925476 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
89925523 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
89925570 CTTATCACACATACT-CA-TGTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATA-TACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
89925617 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
89925664 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
89925711 CTTATACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTAT-C--ACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
89925761 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
89925808 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
89925857 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
89925906 CTTATCACATATATATACACTTTTACATTCATCACATTGGCCAGTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
89925955 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
89925982 TATTCAAATA
Statistics
Matches: 471, Mismatches: 26, Indels: 18
0.91 0.05 0.03
Matches are distributed among these distances:
46 2 0.00
47 282 0.60
48 2 0.00
49 143 0.30
50 41 0.09
51 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:89927496 original size:56 final size:56
Alignment explanation
Indices: 89927429--89927548 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
89927419 TATTAGTTTA
89927429 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
89927485 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
89927541 TTGCCCAT
1 TTGCCCAT
89927549 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:89936370 original size:29 final size:29
Alignment explanation
Indices: 89936326--89936484 Score: 112
Period size: 29 Copynumber: 5.5 Consensus size: 29
89936316 GATCTCATTT
*
89936326 CACACACTTAGTGCTCCAACAACCGATCTTG
1 CACACAC--AGTGCTCCAACAACCGATCTCG
**** *
89936357 CACACACAGTGCTCGGTTATA--GAACTCG
1 CACACACAGTGCTCCAACA-ACCGATCTCG
*
89936385 CACACACAGTGC-CTCAACAACCGATGTCG
1 CACACACAGTGCTC-CAACAACCGATCTCG
**** * *
89936414 CACACACAGTGCT-CGGTTACAGAACTCG
1 CACACACAGTGCTCCAACAACCGATCTCG
89936442 CACACACAGTGC-CTCAACAACCGATCTCG
1 CACACACAGTGCTC-CAACAACCGATCTCG
*
89936471 CACACACAATGCTC
1 CACACACAGTGCTC
89936485 GGTTATGGAA
Statistics
Matches: 94, Mismatches: 26, Indels: 17
0.69 0.19 0.12
Matches are distributed among these distances:
27 2 0.02
28 38 0.40
29 45 0.48
30 2 0.02
31 7 0.07
ACGTcount: A:0.30, C:0.36, G:0.16, T:0.18
Consensus pattern (29 bp):
CACACACAGTGCTCCAACAACCGATCTCG
Found at i:89936390 original size:28 final size:28
Alignment explanation
Indices: 89936356--89936510 Score: 130
Period size: 28 Copynumber: 5.5 Consensus size: 28
89936346 AACCGATCTT
*
89936356 GCACACACAGTGCTCGGTTATAGAACTC
1 GCACACACAGTGCTCGGTTACAGAACTC
**** * **
89936384 GCACACACAGTGCCTCAACAACCGATGTC
1 GCACACACAGTG-CTCGGTTACAGAACTC
89936413 GCACACACAGTGCTCGGTTACAGAACTC
1 GCACACACAGTGCTCGGTTACAGAACTC
**** * *
89936441 GCACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACAGAACTC
* **
89936470 GCACACACAATGCTCGGTTATGGAACTC
1 GCACACACAGTGCTCGGTTACAGAACTC
*
89936498 GCACACACGGTGC
1 GCACACACAGTGC
89936511 CTATGTTCAC
Statistics
Matches: 94, Mismatches: 31, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
28 53 0.56
29 41 0.44
ACGTcount: A:0.29, C:0.34, G:0.20, T:0.17
Consensus pattern (28 bp):
GCACACACAGTGCTCGGTTACAGAACTC
Found at i:89936417 original size:57 final size:57
Alignment explanation
Indices: 89936342--89936512 Score: 288
Period size: 57 Copynumber: 3.0 Consensus size: 57
89936332 CTTAGTGCTC
*
89936342 CAACAACCGATCTTGCACACACAGTGCTCGGTTATAGAACTCGCACACACAGTGCCT
1 CAACAACCGATCTCGCACACACAGTGCTCGGTTATAGAACTCGCACACACAGTGCCT
* *
89936399 CAACAACCGATGTCGCACACACAGTGCTCGGTTACAGAACTCGCACACACAGTGCCT
1 CAACAACCGATCTCGCACACACAGTGCTCGGTTATAGAACTCGCACACACAGTGCCT
* * *
89936456 CAACAACCGATCTCGCACACACAATGCTCGGTTATGGAACTCGCACACACGGTGCCT
1 CAACAACCGATCTCGCACACACAGTGCTCGGTTATAGAACTCGCACACACAGTGCCT
89936513 ATGTTCACTT
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 106 1.00
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.18
Consensus pattern (57 bp):
CAACAACCGATCTCGCACACACAGTGCTCGGTTATAGAACTCGCACACACAGTGCCT
Found at i:89938801 original size:39 final size:39
Alignment explanation
Indices: 89938757--89938947 Score: 294
Period size: 39 Copynumber: 4.9 Consensus size: 39
89938747 TACCAACACA
*
89938757 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCTGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
89938796 AAGCCTACGAGACTTTA-CCCTGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCC-GGATACATTTCCAGCACG
* *
89938835 AAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCATG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
89938874 AAGCCTGCGGGACTTTAGCCCTGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
89938913 AAGCCTGCGGGACTATAGCCCGAATACATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
89938948 TGTCTTGCAT
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 3 0.02
39 133 0.96
40 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:89939946 original size:34 final size:34
Alignment explanation
Indices: 89939884--89939958 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
89939874 ATGTGTATAT
* *
89939884 ATATATATTCACCTTTGGTGATATCAAACCATAC
1 ATATATATTCACCTTTGATGATACCAAACCATAC
* * * *
89939918 ATATGTATTCACTTTTGATTATACCAAACTATAC
1 ATATATATTCACCTTTGATGATACCAAACCATAC
89939952 ATATATA
1 ATATATA
89939959 ATTATGTACT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (34 bp):
ATATATATTCACCTTTGATGATACCAAACCATAC
Found at i:89944587 original size:40 final size:40
Alignment explanation
Indices: 89944531--89944678 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 40
89944521 CGGATGATAA
*
89944531 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTTACTATA-T
* *
89944571 CCGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGAGCTAGTTACTATAT
* * *
89944611 CCGGGCTAAGTCCTGAAGGCATTTGTG-TGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCT-AGTTACTATAT
89944651 CCGGGCTAAGTCCCGAAGGCATTTGAGC
1 CCGGGCTAAGTCCCGAAGGCATTTGAGC
89944679 AAGTAGTTAT
Statistics
Matches: 95, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
39 1 0.01
40 92 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTTACTATAT
Found at i:89944690 original size:80 final size:80
Alignment explanation
Indices: 89944531--89944707 Score: 202
Period size: 80 Copynumber: 2.2 Consensus size: 80
89944521 CGGATGATAA
*
89944531 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGACTAATACCGGGCTAAGCTCCGAAGGCATTTG
* *
89944596 TGCGAGTTACTATAT
66 AGCAAGTTACTATAT
* * *
89944611 CCGGGCTAAGTCCTGAAGGCATTTGTG-TGAGTTACT-ATAACCGGGCTAAG-TCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCT-AGTGACTAAT-ACCGGGCTAAGCT-CCGAAGGCAT
*
89944673 TTGAGCAAG-TAGTTATAT
63 TTGAGCAAGTTA-CTATAT
* *
89944691 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
89944708 ATGCTTGGGT
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
79 19 0.23
80 64 0.77
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGACTAATACCGGGCTAAGCTCCGAAGGCATTTG
AGCAAGTTACTATAT
Found at i:89944974 original size:22 final size:21
Alignment explanation
Indices: 89944933--89944976 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
89944923 GAATGTGCAT
89944933 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
89944955 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
89944977 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:89949666 original size:27 final size:27
Alignment explanation
Indices: 89949635--89949812 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
89949625 TAAATTGTAC
89949635 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
89949662 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
89949688 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
89949716 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
89949744 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
89949771 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
89949798 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
89949813 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:89949749 original size:82 final size:81
Alignment explanation
Indices: 89949636--89949791 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
89949626 AAATTGTACA
* *
89949636 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
89949700 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
89949717 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
89949782 TGCGAGTTGA
65 TGCGAATTGA
89949792 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:89949803 original size:82 final size:81
Alignment explanation
Indices: 89949632--89949812 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
89949622 GATTAAATTG
* *
89949632 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
89949697 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
89949713 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
89949777 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
89949795 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
89949813 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:89969079 original size:40 final size:39
Alignment explanation
Indices: 89969048--89969257 Score: 251
Period size: 40 Copynumber: 5.3 Consensus size: 39
89969038 GGACTAAGAT
* *
89969048 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
89969088 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
89969128 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* *
89969168 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
89969208 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
89969247 CCGAAGGCATT
1 CCGAAGGCATT
89969258 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 33 0.21
40 120 0.77
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:89969211 original size:120 final size:120
Alignment explanation
Indices: 89968995--89969257 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
89968985 TTGAATGCTG
* *
89968995 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
89969059 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
89969115 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
89969178 TCGTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
89969234 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
89969258 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.31
120 75 0.61
121 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:89969277 original size:79 final size:80
Alignment explanation
Indices: 89968996--89969292 Score: 239
Period size: 80 Copynumber: 3.7 Consensus size: 80
89968986 TGAATGCTGT
* ** * * * **
89968996 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
89969059 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
89969076 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
89969140 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * *
89969156 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
89969220 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
89969235 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
89969293 TACGTGATTT
Statistics
Matches: 185, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
78 16 0.09
79 47 0.25
80 111 0.60
81 11 0.06
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:89971146 original size:31 final size:31
Alignment explanation
Indices: 89971108--89971287 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
89971098 ACAAATGACA
*
89971108 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
89971139 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
89971170 AGTGAAAAGTGGTAG-TTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
89971201 AGTGAAAAGTGGTAGCTCCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
89971232 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
89971263 AGTGAATAGTGGTAGCTTCAGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
89971288 AAGTGACAAG
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
30 3 0.02
31 132 0.96
32 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:89971298 original size:7 final size:7
Alignment explanation
Indices: 89971286--89971314 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
89971276 AGCTTCAGCT
89971286 ACAAGTG
1 ACAAGTG
89971293 ACAAGTG
1 ACAAGTG
89971300 ACAAGTG
1 ACAAGTG
89971307 ACAAGTG
1 ACAAGTG
89971314 A
1 A
89971315 TTTCCGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:89975008 original size:40 final size:40
Alignment explanation
Indices: 89974944--89975081 Score: 141
Period size: 40 Copynumber: 3.5 Consensus size: 40
89974934 CTTTTCAGGT
* * * *
89974944 CAAATCCTATTCGCCTTAAGTTACCACAGTGAATTAGGAA
1 CAAATCCTATTCACTTTAAATTACCACAGTGAATCAGGAA
* *
89974984 TAAATCCTATTCACTTTAAATTACCATAGTGAATCAGGAA
1 CAAATCCTATTCACTTTAAATTACCACAGTGAATCAGGAA
* * ** ** *
89975024 CAAATCCTATCCACTTTGAGGTATTATAGTGAATCAGGAA
1 CAAATCCTATTCACTTTAAATTACCACAGTGAATCAGGAA
* *
89975064 CGAATCCTATCCACTTTA
1 CAAATCCTATTCACTTTA
89975082 TATTCTCGAG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (40 bp):
CAAATCCTATTCACTTTAAATTACCACAGTGAATCAGGAA
Found at i:89977531 original size:22 final size:22
Alignment explanation
Indices: 89977506--89977549 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
89977496 TGGTATCTAG
*
89977506 TAAGAATTTGCCTGTTGGGTTT
1 TAAGAATTTGCCTGTTGAGTTT
*
89977528 TAAGAATTTTCCTGTTGAGTTT
1 TAAGAATTTGCCTGTTGAGTTT
89977550 ATTGTGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.09, G:0.23, T:0.48
Consensus pattern (22 bp):
TAAGAATTTGCCTGTTGAGTTT
Found at i:89985226 original size:21 final size:21
Alignment explanation
Indices: 89985192--89985237 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
89985182 CTAAGATGTG
*
89985192 AATTGGATTGAATTGA-GTTTA
1 AATTGGATTAAATTGATG-TTA
*
89985213 AATTGTATTAAATTGATGTTA
1 AATTGGATTAAATTGATGTTA
89985234 AATT
1 AATT
89985238 TACTCGTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (21 bp):
AATTGGATTAAATTGATGTTA
Found at i:89985475 original size:19 final size:18
Alignment explanation
Indices: 89985447--89985498 Score: 72
Period size: 19 Copynumber: 2.9 Consensus size: 18
89985437 ATCCGACAAA
89985447 GCCC-AATAAATGATAAT
1 GCCCGAATAAATGATAAT
*
89985464 GCCTGAAATAAATGATAAT
1 GCCCG-AATAAATGATAAT
89985483 GCCCG-ATAAATGATAA
1 GCCCGAATAAATGATAA
89985499 ATGATAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 14 0.45
19 17 0.55
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (18 bp):
GCCCGAATAAATGATAAT
Found at i:89991336 original size:45 final size:45
Alignment explanation
Indices: 89991251--89991417 Score: 176
Period size: 45 Copynumber: 3.7 Consensus size: 45
89991241 CGAACAGAAA
* * ** *
89991251 CAAACATAGCCTCCAAACACAACC-AATTTACGTTCAAAACACAAC
1 CAAACATAGCCTCC-AATACAACCAAATATACCATCCAAACACAAC
* *
89991296 CAAACATACCCTCCAATACAACCAAATATACCCTCCAAACACAAC
1 CAAACATAGCCTCCAATACAACCAAATATACCATCCAAACACAAC
* * * *
89991341 CAAATATAGCCTCCCAATACAACGAAATATATCATCCAAACATAAC
1 CAAACATAGCCT-CCAATACAACCAAATATACCATCCAAACACAAC
* *
89991387 CAAATATAGCCTCCCA-ACACACCAAATATAC
1 CAAACATAGCCTCCAATACA-ACCAAATATAC
89991418 AACCAAATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
44 11 0.11
45 52 0.50
46 41 0.39
ACGTcount: A:0.47, C:0.34, G:0.03, T:0.16
Consensus pattern (45 bp):
CAAACATAGCCTCCAATACAACCAAATATACCATCCAAACACAAC
Found at i:89991343 original size:23 final size:23
Alignment explanation
Indices: 89991251--89991417 Score: 160
Period size: 23 Copynumber: 7.4 Consensus size: 23
89991241 CGAACAGAAA
* *
89991251 CAAACATAGCCTCCAAACACAAC
1 CAAATATACCCTCCAAACACAAC
* ** *
89991274 C-AATTTACGTTCAAAACACAAC
1 CAAATATACCCTCCAAACACAAC
* *
89991296 CAAACATACCCTCC-AATACAAC
1 CAAATATACCCTCCAAACACAAC
89991318 CAAATATACCCTCCAAACACAAC
1 CAAATATACCCTCCAAACACAAC
* * *
89991341 CAAATATAGCCTCCCAATACAAC
1 CAAATATACCCTCCAAACACAAC
* * * *
89991364 GAAATATATCATCCAAACATAAC
1 CAAATATACCCTCCAAACACAAC
* *
89991387 CAAATATAGCCTCCCAACAC-AC
1 CAAATATACCCTCCAAACACAAC
89991409 CAAATATAC
1 CAAATATAC
89991418 AACCAAATAT
Statistics
Matches: 113, Mismatches: 29, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
22 46 0.41
23 67 0.59
ACGTcount: A:0.47, C:0.34, G:0.03, T:0.16
Consensus pattern (23 bp):
CAAATATACCCTCCAAACACAAC
Found at i:89991379 original size:46 final size:45
Alignment explanation
Indices: 89991251--89991424 Score: 183
Period size: 46 Copynumber: 3.9 Consensus size: 45
89991241 CGAACAGAAA
* * * * * *
89991251 CAAACATAGCCTCCAAACACAACC-AATTTACGTTCAAAACACAAC
1 CAAATATAGCCTCCCAATACAACCAAATATAC-ATCCAAACACAAC
* * *
89991296 CAAACATACCCT-CCAATACAACCAAATATACCCTCCAAACACAAC
1 CAAATATAGCCTCCCAATACAACCAAATATA-CATCCAAACACAAC
* *
89991341 CAAATATAGCCTCCCAATACAACGAAATATATCATCCAAACATAAC
1 CAAATATAGCCTCCCAATACAACCAAATATA-CATCCAAACACAAC
* *
89991387 CAAATATAGCCTCCCAACAC-ACCAAATATACAACCAAA
1 CAAATATAGCCTCCCAATACAACCAAATATACATCCAAA
89991425 TATATCCTCC
Statistics
Matches: 111, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
44 16 0.14
45 46 0.41
46 49 0.44
ACGTcount: A:0.48, C:0.34, G:0.03, T:0.16
Consensus pattern (45 bp):
CAAATATAGCCTCCCAATACAACCAAATATACATCCAAACACAAC
Found at i:89991412 original size:32 final size:33
Alignment explanation
Indices: 89991376--89991441 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
89991366 AATATATCAT
*
89991376 CCAAACAT-AACCAAATATAGCCTCCCAACACA
1 CCAAACATAAACCAAATATAGCCTCCAAACACA
* *
89991408 CCAAATATACAACCAAATATATCCTCCAAACACA
1 CCAAACATA-AACCAAATATAGCCTCCAAACACA
89991442 ACCACTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 7 0.24
34 22 0.76
ACGTcount: A:0.48, C:0.35, G:0.02, T:0.15
Consensus pattern (33 bp):
CCAAACATAAACCAAATATAGCCTCCAAACACA
Found at i:89992642 original size:16 final size:16
Alignment explanation
Indices: 89992621--89992670 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
89992611 TTATAAATTA
89992621 TTAGAAGCTCAATCGG
1 TTAGAAGCTCAATCGG
* * *
89992637 TTAGAAACTTAGTCGG
1 TTAGAAGCTCAATCGG
*
89992653 TTGGAAGCTCAATCGG
1 TTAGAAGCTCAATCGG
89992669 TT
1 TT
89992671 TGAATATAAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (16 bp):
TTAGAAGCTCAATCGG
Found at i:89998951 original size:16 final size:16
Alignment explanation
Indices: 89998930--89998961 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
89998920 CTGATGTTGG
89998930 ATATACCATAATCTAT
1 ATATACCATAATCTAT
89998946 ATATACCATAATCTAT
1 ATATACCATAATCTAT
89998962 GTAGAGGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATACCATAATCTAT
Found at i:90009881 original size:47 final size:46
Alignment explanation
Indices: 90009813--90009932 Score: 143
Period size: 47 Copynumber: 2.6 Consensus size: 46
90009803 TGTGTGCTAG
* * *
90009813 TGAAAGACATGTCTGGAACATGCATCAGCCA-TATTATGAGAGCCAA
1 TGAAAGACATGTCTGGGACATGCATCAG-CATTAATACGAGAGCCAA
* *
90009859 TGAAAGACCATGTCTGGGACATGGCATCAGCATTAATACGAGAGCTAG
1 TGAAAGA-CATGTCTGGGACAT-GCATCAGCATTAATACGAGAGCCAA
* *
90009907 TGTAAGACATGTCTGAGACATGCATC
1 TGAAAGACATGTCTGGGACATGCATC
90009933 GGCCTCGAGA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
46 12 0.19
47 28 0.44
48 24 0.38
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (46 bp):
TGAAAGACATGTCTGGGACATGCATCAGCATTAATACGAGAGCCAA
Found at i:90009988 original size:46 final size:44
Alignment explanation
Indices: 90009905--90010019 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 44
90009895 TACGAGAGCT
* * *
90009905 AGTGTAAGACATGTCTGAGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGAGGT--GCC
* *
90009951 AGTGTAAGACATGTTTGGGACATGCATC-GACTACGAGAGGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGACT-CGAGAGGTGCC
*
90009995 AGTATAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
90010020 GCATTGGCAC
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 10 0.17
45 17 0.28
46 33 0.55
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGAGGTGCC
Found at i:90017716 original size:15 final size:15
Alignment explanation
Indices: 90017696--90017726 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
90017686 TAAAATAAAA
90017696 TCAAATGGGTCATCT
1 TCAAATGGGTCATCT
90017711 TCAAATGGGTCATCT
1 TCAAATGGGTCATCT
90017726 T
1 T
90017727 TCTTCTCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (15 bp):
TCAAATGGGTCATCT
Found at i:90018696 original size:45 final size:46
Alignment explanation
Indices: 90018597--90018715 Score: 143
Period size: 45 Copynumber: 2.6 Consensus size: 46
90018587 TATGAGGGAA
* * * * *
90018597 AGTGTAAGACCATGTCTGGGACATGGATAGGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTTTGGGACATGCATAGGCATCGAGATGAGAACC
*
90018644 AGTGTAAGACATGTTTGGGACATGCAT-GGCCTCGAGATGTA-AACC
1 AGTGTAAGACATGTTTGGGACATGCATAGGCATCGAGATG-AGAACC
*
90018689 AGTGTAAGACATGTTTGGAACATGCAT
1 AGTGTAAGACATGTTTGGGACATGCAT
90018716 CGGCTACAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
45 38 0.59
46 17 0.27
47 9 0.14
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATAGGCATCGAGATGAGAACC
Found at i:90018747 original size:45 final size:44
Alignment explanation
Indices: 90018644--90018765 Score: 131
Period size: 45 Copynumber: 2.7 Consensus size: 44
90018634 GATGAGAGCT
*
90018644 AGTGTAAGACATGTTTGGGACATGCAT-GGCCTCGAGATGTAAACC
1 AGTGTAAGACATGTTTGGGACATGCATCGG-CTCAAGATGT-AACC
* **
90018689 AGTGTAAGACATGTTTGGAACATGCATCGGCTACAAGATGT-GTC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCT-CAAGATGTAACC
**
90018733 AGTGTAAGACCATGTCGGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC
90018766 ATGTATAGAG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 10 0.15
45 39 0.59
46 17 0.26
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCTCAAGATGTAACC
Found at i:90027998 original size:40 final size:39
Alignment explanation
Indices: 90027904--90028078 Score: 190
Period size: 40 Copynumber: 4.4 Consensus size: 39
90027894 TATTCGAATG
*
90027904 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGTCC-GAAGGCATTTGTGCTA-GTGACT
* * * *
90027945 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAG-TGACT
* * *
90027985 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
* *
90028025 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
*
90028065 ACATCCGGGCTAAG
1 ATATCCGGGCTAAG
90028079 ACCCAAAGGC
Statistics
Matches: 112, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 81 0.72
41 27 0.24
42 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
Found at i:90028079 original size:80 final size:81
Alignment explanation
Indices: 90027906--90028088 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 81
90027896 TTCGAATGAT
* * * *
90027906 ATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCAT
* * *
90027971 TCGTGCGAGTTGCTAT
66 TCATGCGAGTTGCCAC
* * *
90027987 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATTATATCCGGGCTAAG-TCCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGCA
* *
90028050 TTTATGCTAG-TGACCAC
65 TTCATGCGAGTTG-CCAC
*
90028067 ATCCGGGCTAAGACCCAAAGGC
1 ATCCGGGCTAAGACCCGAAGGC
90028089 CTTGCGCAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 55 0.63
81 29 0.33
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (81 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCAT
TCATGCGAGTTGCCAC
Found at i:90067052 original size:12 final size:11
Alignment explanation
Indices: 90067035--90067065 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
90067025 TTTTTTCTCT
90067035 AAAAAAATAGAA
1 AAAAAAAT-GAA
90067047 AAAAAAATGAA
1 AAAAAAATGAA
90067058 AAAAAAAT
1 AAAAAAAT
90067066 TGATTGAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.10
Consensus pattern (11 bp):
AAAAAAATGAA
Found at i:90082252 original size:50 final size:50
Alignment explanation
Indices: 90082176--90082353 Score: 173
Period size: 50 Copynumber: 3.5 Consensus size: 50
90082166 TTGTGAGTCA
* **
90082176 CATGTGTAGTACTAAGTGTAAACTACTACGTGTACCAAATTGATAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCG
* * * * * *
90082226 TATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTT-CTA--TCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC---AAATTGATAGGTCG
* * * *
90082277 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGGTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCG
*
90082327 CATGTGTAGTACTAAGTGTAGGCTACT
1 CATGTGTAGTACTAAGTGCAGGCTACT
90082354 GTGCTTACCA
Statistics
Matches: 101, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
47 3 0.03
48 2 0.02
50 57 0.56
51 33 0.33
53 2 0.02
54 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCG
Found at i:90082353 original size:101 final size:101
Alignment explanation
Indices: 90082173--90082362 Score: 281
Period size: 101 Copynumber: 1.9 Consensus size: 101
90082163 TCGTTGTGAG
* * *
90082173 TCACATGTGTAGTACTAAGTGTAAACTACTACGTGTACCAAATTGATAGGTCGTATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAAACTACTACATGTACCAAATTGATAGGTCGCATGTGTAGTAC
90082238 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCTA
66 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCTA
* ** * *
90082274 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGGTAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAAACTACTACATGTACCAAATTGATAGGTCGCATGTGTAGTAC
* * *
90082339 TAAGTGTAGGCTACTGTGCTTACC
66 TAAGTGCAGGCTACTATGCGTACC
90082363 AGAGAGCTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAAACTACTACATGTACCAAATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCTA
Found at i:90094143 original size:17 final size:17
Alignment explanation
Indices: 90094121--90094154 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
90094111 ATCCTTTATC
90094121 ATTTTT-TTAATTTCCTT
1 ATTTTTGTT-ATTTCCTT
90094138 ATTTTTGTTATTTCCTT
1 ATTTTTGTTATTTCCTT
90094155 TGTTATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.15, C:0.12, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTTTGTTATTTCCTT
Found at i:90101893 original size:39 final size:39
Alignment explanation
Indices: 90101835--90101978 Score: 200
Period size: 39 Copynumber: 3.7 Consensus size: 39
90101825 TTCAGTGATG
*
90101835 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
90101874 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
90101913 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
90101952 TATGTCCGGGC-TAAAGTCTCGCAGGCT
1 TATATCCGGACTTAAGGTC-CGCAGGCT
90101979 TCGAGCTGGT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 6 0.06
39 88 0.94
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:90101987 original size:78 final size:78
Alignment explanation
Indices: 90101835--90101998 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
90101825 TTCAGTGATG
* * * **
90101835 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTCCGCAGGC
*
90101900 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
90101913 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCTCGCAGG
1 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTC-CGCAGG
*
90101977 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
90101991 TATA-CCGG
1 TATATCCGG
90101999 GTTTAAATTC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 10 0.14
78 64 0.86
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCACAGGCTACGTGCTAGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:90113109 original size:41 final size:41
Alignment explanation
Indices: 90113064--90113295 Score: 313
Period size: 41 Copynumber: 5.7 Consensus size: 41
90113054 GAATATAAAC
* * *
90113064 AGGGGCACGTATGTGCTATTTAAGGGTACCAAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* * * *
90113105 AGGGGCACGGATGTGCTATTTAAGGGTACCGAAGTAAAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
*
90113146 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* * * *
90113187 AGGGGAACATATGTGCAATTCAAGTGTACCGACGTACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
* * *
90113228 AGGGGGACGTATGTACAATTCAAGGGTACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
*
90113269 AGAGGCACGTATGTGCAATTC-AGGGTA
1 AGGGGCACGTATGTGCAATTCAAGGGTA
90113296 TAATTAATTA
Statistics
Matches: 169, Mismatches: 22, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 6 0.04
41 163 0.96
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
Found at i:90113265 original size:21 final size:21
Alignment explanation
Indices: 90113161--90113266 Score: 65
Period size: 21 Copynumber: 5.1 Consensus size: 21
90113151 CACGTATGTG
90113161 CAATTCAGGGGTACCGAAGTA
1 CAATTCAGGGGTACCGAAGTA
* * ** * *
90113182 CAAAT-AGGGGAACATATGTG
1 CAATTCAGGGGTACCGAAGTA
* * *
90113202 CAATTCAAGTGTACCGACGTA
1 CAATTCAGGGGTACCGAAGTA
* * *
90113223 CAAAT-AGGGGGA-CGTATGTA
1 CAATTCAGGGGTACCG-AAGTA
*
90113243 CAATTCAAGGGTACCGAAGTA
1 CAATTCAGGGGTACCGAAGTA
90113264 CAA
1 CAA
90113267 ACAGAGGCAC
Statistics
Matches: 58, Mismatches: 23, Indels: 8
0.65 0.26 0.09
Matches are distributed among these distances:
19 2 0.03
20 26 0.45
21 28 0.48
22 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (21 bp):
CAATTCAGGGGTACCGAAGTA
Found at i:90123942 original size:43 final size:43
Alignment explanation
Indices: 90123886--90124043 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 43
90123876 AATGCCACAT
* ** * *
90123886 CCCAGATATGGTCTTACATGTTATCACATATCGATGCCATTGC
1 CCCAGATATGGTCTTACACGAAATCACATAACGATGCCAATGC
* * *
90123929 CCCAGATAGGGTCTTACACGAAATCATATAACGATGCCAATGT
1 CCCAGATATGGTCTTACACGAAATCACATAACGATGCCAATGC
* * *
90123972 CCCAGACATGGTCTTACAC-ATAATCACA-ATACAATGCCAATGT
1 CCCAGATATGGTCTTACACGA-AATCACATA-ACGATGCCAATGC
*** * *
90124015 CCCAGACGCGGTCTTACATGCAATCACAT
1 CCCAGATATGGTCTTACACGAAATCACAT
90124044 CTCGATAACC
Statistics
Matches: 95, Mismatches: 16, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
42 2 0.02
43 93 0.98
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
CCCAGATATGGTCTTACACGAAATCACATAACGATGCCAATGC
Found at i:90130538 original size:13 final size:13
Alignment explanation
Indices: 90130520--90130546 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
90130510 TGTGATCATT
90130520 GTAGCTTAATCTA
1 GTAGCTTAATCTA
90130533 GTAGCTTAATCTA
1 GTAGCTTAATCTA
90130546 G
1 G
90130547 CTAATCTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GTAGCTTAATCTA
Found at i:90131706 original size:41 final size:41
Alignment explanation
Indices: 90131615--90131714 Score: 121
Period size: 41 Copynumber: 2.5 Consensus size: 41
90131605 ATGATGTTGT
* *
90131615 GGTGTATTATAT-AGGCTTTATGCCTAGCAAGCTTCGTGCC
1 GGTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACC
* * * *
90131655 AGTGTATTATATCAGGCTTGGTGCCTAGCAGGCTTCGTATC
1 GGTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACC
* *
90131696 GGTGTGTTATATCAAGCTT
1 GGTGTATTATATCAGGCTT
90131715 TGAGCTTACC
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 11 0.22
41 39 0.78
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (41 bp):
GGTGTATTATATCAGGCTTGATGCCTAGCAAGCTTCGTACC
Found at i:90134389 original size:47 final size:47
Alignment explanation
Indices: 90134329--90134550 Score: 167
Period size: 47 Copynumber: 4.7 Consensus size: 47
90134319 ATTGTTGGCT
*
90134329 AGTGTAA-AACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCC
* * * *
90134375 AATGTAAGACCATGTCTGGGACATGGCATCAG--CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
* * * *
90134423 AGTGTAAGA-CATGTCTGGGACAT-ACATTGGCTACGA-TATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-AC-ATTATGAGAGCC
* * * *
90134469 AGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGA-TAT-A-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC---ACATTATGAGAGCC
*
90134516 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
90134551 CTTACCCACG
Statistics
Matches: 140, Mismatches: 23, Indels: 28
0.73 0.12 0.15
Matches are distributed among these distances:
44 1 0.01
45 4 0.03
46 24 0.17
47 76 0.54
48 27 0.19
49 6 0.04
50 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCC
Found at i:90134492 original size:94 final size:94
Alignment explanation
Indices: 90134326--90134498 Score: 258
Period size: 94 Copynumber: 1.8 Consensus size: 94
90134316 GTTATTGTTG
*
90134326 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
1 GCTAGTGTAAAACATGTCTGGGACATACATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
*
90134391 TGGGACATGGCATCAGCATTGAGACGAGA
66 TGAGACATGGCATCAGCATTGAGACGAGA
* * * * * *
90134420 GCTAGTGTAAGACATGTCTGGGACATACATTGGCTACGA-TATGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAAACATGTCTGGGACATACATCGGCCAC-ATTATGAGAGCCAATGTAAGACCATGT
90134484 CTGAGACATGGCATC
65 CTGAGACATGGCATC
90134499 GACTTGAGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
94 69 0.99
95 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAAACATGTCTGGGACATACATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
TGAGACATGGCATCAGCATTGAGACGAGA
Found at i:90134530 original size:94 final size:94
Alignment explanation
Indices: 90134326--90134548 Score: 249
Period size: 94 Copynumber: 2.4 Consensus size: 94
90134316 GTTATTGTTG
* *
90134326 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
* *
90134391 TGGGACATGGCATCAGCATTGAGACGAGA
66 TGAGACATGGCATCAGCATTGAGACGAAA
* * * * *
90134420 GCTAGTGTAAGACATGTCTGGGACATACATTGGCTACGA-TATGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCAC-ATTATGAGAGCCAATGTAAGACCATGT
*
90134484 CTGAGACATGGCATC-G-ACTTGAGA-TATAA
65 CTGAGACATGGCATCAGCA-TTGAGACGA-AA
* *
90134513 G-TCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-ACATCGGC
90134549 ACCTTACCCA
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
92 3 0.03
93 18 0.16
94 82 0.75
95 7 0.06
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATACATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
TGAGACATGGCATCAGCATTGAGACGAAA
Found at i:90136670 original size:27 final size:27
Alignment explanation
Indices: 90136640--90136694 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
90136630 AATTCCTAGA
90136640 GCTAAAGCAACGCCAAATTTCAGGGAC
1 GCTAAAGCAACGCCAAATTTCAGGGAC
* * *
90136667 GCTAAAGCAAGGCCGAATTTCAGTGAC
1 GCTAAAGCAACGCCAAATTTCAGGGAC
90136694 G
1 G
90136695 AAATATGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (27 bp):
GCTAAAGCAACGCCAAATTTCAGGGAC
Found at i:90150171 original size:41 final size:41
Alignment explanation
Indices: 90150125--90150222 Score: 144
Period size: 41 Copynumber: 2.4 Consensus size: 41
90150115 AAACGCCGCA
* *
90150125 AAAAACTAAGCAATA-ACGGTGTTTTTGTTCAAAACACCACT
1 AAAAACTGAGCAATAGA-GGTATTTTTGTTCAAAACACCACT
*
90150166 AAAAACTGAGCAATAGAGGTATTTTTGTTCAAAACGCCACT
1 AAAAACTGAGCAATAGAGGTATTTTTGTTCAAAACACCACT
*
90150207 AAAAATTGAGCAATAG
1 AAAAACTGAGCAATAG
90150223 CGCTAAAAAC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 51 0.98
42 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (41 bp):
AAAAACTGAGCAATAGAGGTATTTTTGTTCAAAACACCACT
Found at i:90150283 original size:60 final size:61
Alignment explanation
Indices: 90150164--90150284 Score: 154
Period size: 60 Copynumber: 2.0 Consensus size: 61
90150154 CAAAACACCA
* * * * *
90150164 CTAAAAACTGAGCAATAGAGGTATTTTTGTTCAAAACGCCACTAAAAATTGAGCAATAGCG
1 CTAAAAACTGAGAAATAGAGGCATTTTTGTTCAAAACACCACTAAAAACTAAGCAATAGCG
* * * *
90150225 CTAAAAACTGAGAAATGGCGGCGTTTTTG-TCCAAACACCACTAAAAACTAAGCAATAGCG
1 CTAAAAACTGAGAAATAGAGGCATTTTTGTTCAAAACACCACTAAAAACTAAGCAATAGCG
90150285 GCGTTTTTTG
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
60 27 0.53
61 24 0.47
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.22
Consensus pattern (61 bp):
CTAAAAACTGAGAAATAGAGGCATTTTTGTTCAAAACACCACTAAAAACTAAGCAATAGCG
Found at i:90150312 original size:41 final size:40
Alignment explanation
Indices: 90150225--90150302 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
90150215 AGCAATAGCG
* * *
90150225 CTAAAAACTGAGAAATGGCGGCGTTTTTGTCCAAACACCA
1 CTAAAAACTAAGAAATAGCGGCGTTTTTGTACAAACACCA
*
90150265 CTAAAAACTAAGCAATAGCGGCGTTTTTTGTTACAAAC
1 CTAAAAACTAAGAAATAGCGGCG-TTTTTG-TACAAAC
90150303 GCCGCAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 20 0.62
41 6 0.19
42 6 0.19
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (40 bp):
CTAAAAACTAAGAAATAGCGGCGTTTTTGTACAAACACCA
Found at i:90150331 original size:101 final size:102
Alignment explanation
Indices: 90150145--90150332 Score: 242
Period size: 101 Copynumber: 1.9 Consensus size: 102
90150135 CAATAACGGT
*
90150145 GTTTTTGTTCAAAACACCACTAAAAACTGAGCAATAGAGGTATTTTTGTTCAAAACGCCACTAAA
1 GTTTTTGTTCAAAACACCACTAAAAACTAAGCAATAGAGGTATTTTTGTTCAAAACGCCACTAAA
*
90150210 AATTGAGCAATAGCGCTAAAAACTGAGAAATGGCGGC
66 AATTGAGCAATAGCGATAAAAACTGAGAAATGGCGGC
* * *
90150247 GTTTTTG-TCCAAACACCACTAAAAACTAAGCAATAGCGGCGT-TTTTTGTT-ACAAACGCCGC-
1 GTTTTTGTTCAAAACACCACTAAAAACTAAGCAATAG-AG-GTATTTTTGTTCA-AAACGCCACT
* *
90150308 AAAAAGTTGATCTATAGC-ATAAAAA
63 AAAAA-TTGAGCAATAGCGATAAAAA
90150333 GTTGAGCAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
101 39 0.52
102 34 0.45
103 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.26
Consensus pattern (102 bp):
GTTTTTGTTCAAAACACCACTAAAAACTAAGCAATAGAGGTATTTTTGTTCAAAACGCCACTAAA
AATTGAGCAATAGCGATAAAAACTGAGAAATGGCGGC
Found at i:90150653 original size:21 final size:22
Alignment explanation
Indices: 90150606--90150646 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
90150596 ATGGGTTTCT
*
90150606 TTAAACCCCTAAACCTTAAACA
1 TTAAACCCCTAAACCCTAAACA
90150628 TTAAA-CCCTAAACCCTAAA
1 TTAAACCCCTAAACCCTAAA
90150647 TTCTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (22 bp):
TTAAACCCCTAAACCCTAAACA
Found at i:90151133 original size:21 final size:20
Alignment explanation
Indices: 90151109--90151185 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 20
90151099 GTGCATGAAA
90151109 TTAGGGTTTAAGGTTTAGAAT
1 TTAGGGTTTAAGGTTTAG-AT
*
90151130 TTA-GGTTTAAGGTTTAGGGT
1 TTAGGGTTTAAGGTTTA-GAT
* *
90151150 ATT-GGGTTTATGGTTTAGTT
1 -TTAGGGTTTAAGGTTTAGAT
90151170 TATAGGGTTT-AGGTTT
1 T-TAGGGTTTAAGGTTT
90151186 TAAGGTATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
19 1 0.02
20 22 0.47
21 24 0.51
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (20 bp):
TTAGGGTTTAAGGTTTAGAT
Found at i:90151205 original size:28 final size:27
Alignment explanation
Indices: 90151174--90151236 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 27
90151164 TTAGTTTATA
90151174 GGGTTTAGGTTTTAAGGTATTC-GGTATT
1 GGGTTTAGG-TTTAAGGTA-TCGGGTATT
*
90151202 GGGTTTAAGGTTTAGGGTATCGGGTATT
1 GGGTTT-AGGTTTAAGGTATCGGGTATT
90151230 GGGTTTA
1 GGGTTTA
90151237 CAAATTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 3 0.09
28 26 0.81
29 3 0.09
ACGTcount: A:0.17, C:0.03, G:0.37, T:0.43
Consensus pattern (27 bp):
GGGTTTAGGTTTAAGGTATCGGGTATT
Found at i:90151834 original size:154 final size:154
Alignment explanation
Indices: 90151528--90151816 Score: 368
Period size: 154 Copynumber: 1.9 Consensus size: 154
90151518 ACGCCAAATG
* * * * ** *
90151528 CCACAATAGATTAGCATTAGCCGTGTTTCTACGAAAACGTCGCAAAAAACAATTTTAAAACGACT
1 CCACAATAGATTAGCATTAGCCGCGTTTCTACAAAAACGCCCCAAAAAACAATAATAAAACGACG
* * **
90151593 CCGTCTTGTGATGCATCTTTAATGGCTTTTGCGGCCAATGGTGAAAAATGCCGCAATAGATTAGC
66 CCGTCTTGTGATGCATCTTTAATGGCTTTAGCGGCCAAGGGTGAAAAACCCCGCAATAGATTAGC
90151658 ATTAGCGACGTTTGTTAAAAAACA
131 ATTAGCGACGTTTGTTAAAAAACA
* * *
90151682 CCACAATAGATTAGCATTAGCGGCGTTTGTTA-AAAAACGCCCCAAAAAGA-AATAATAAAATGA
1 CCACAATAGATTAGCATTAGCCGCGTTT-CTACAAAAACGCCCCAAAAA-ACAATAATAAAACGA
* * * *
90151745 CGCCGTCTTTTGATGCATTTTTAGTGGCTTTAGCGGCGCTAGGGTG-AAAACCCCGCAATAGATT
64 CGCCGTCTTGTGATGCATCTTTAATGGCTTTAGCGGC-CAAGGGTGAAAAACCCCGCAATAGATT
90151809 AGCATTAG
128 AGCATTAG
90151817 TGGCGTTTTT
Statistics
Matches: 114, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
154 105 0.92
155 9 0.08
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (154 bp):
CCACAATAGATTAGCATTAGCCGCGTTTCTACAAAAACGCCCCAAAAAACAATAATAAAACGACG
CCGTCTTGTGATGCATCTTTAATGGCTTTAGCGGCCAAGGGTGAAAAACCCCGCAATAGATTAGC
ATTAGCGACGTTTGTTAAAAAACA
Found at i:90151904 original size:114 final size:116
Alignment explanation
Indices: 90151675--90151932 Score: 351
Period size: 115 Copynumber: 2.2 Consensus size: 116
90151665 ACGTTTGTTA
* *
90151675 AAAAACACCACAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCCCAAAAAGAAATAATAA
1 AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
* *
90151740 AATGACGCCGTCTTTTGATGCATTTTTAGTGGCTTTAGCGGCGCTAGGGTG
66 AACGACGCCGTCTTTTGATGCATCTTTAGTGGCTTTAGCGGCGCTAGGGTG
* * * ** * *
90151791 -AAAACCCCGCAATAGATTAGCATTAGTGGCGTTTTTTTTAAAACGCCACAAAAA-CAATATTAA
1 AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
* *
90151854 AACGACGCCGT-TTTGTGATGCATCTTTGGTGGCTTTAGCGGGGCTAGGGTG
66 AACGACGCCGTCTTT-TGATGCATCTTTAGTGGCTTTAGCGGCGCTAGGGTG
* *
90151905 AAAAACGCTGCAATAGATTAGCATTAGC
1 AAAAACACCGCAATAGATTAGCATTAGC
90151933 CCGCAAAAAA
Statistics
Matches: 124, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
113 3 0.02
114 50 0.40
115 71 0.57
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (116 bp):
AAAAACACCGCAATAGATTAGCATTAGCGGCGTTTGTTAAAAAACGCCACAAAAAGAAATAATAA
AACGACGCCGTCTTTTGATGCATCTTTAGTGGCTTTAGCGGCGCTAGGGTG
Found at i:90154876 original size:9 final size:9
Alignment explanation
Indices: 90154864--90155127 Score: 115
Period size: 9 Copynumber: 30.0 Consensus size: 9
90154854 TATATCATAT
90154864 CATAACTTA
1 CATAACTTA
90154873 CATAACTTA
1 CATAACTTA
* *
90154882 TATACCTTA
1 CATAACTTA
90154891 CATAA--TA
1 CATAACTTA
*
90154898 CATAA-ATA
1 CATAACTTA
* *
90154906 TATATCATATA
1 CATAAC-T-TA
90154917 -ATAACTTA
1 CATAACTTA
90154925 CATAACTTA
1 CATAACTTA
*
90154934 CAAAACTTA
1 CATAACTTA
90154943 CATAA--TA
1 CATAACTTA
*
90154950 CATAA-ATA
1 CATAACTTA
* *
90154958 TATATCATATA
1 CATAAC-T-TA
90154969 -ATAACTTA
1 CATAACTTA
*
90154977 CATAA-ATA
1 CATAACTTA
* *
90154985 TATATCCTATA
1 CATA-ACT-TA
90154996 -ATAACTTA
1 CATAACTTA
90155004 CATAACTTA
1 CATAACTTA
90155013 CATAACTTA
1 CATAACTTA
**
90155022 TGTAA--TA
1 CATAACTTA
*
90155029 CATAA-ATA
1 CATAACTTA
* ** *
90155037 TATTTCATA
1 CATAACTTA
*
90155046 TCATAATTTA
1 -CATAACTTA
90155056 CATAACTTA
1 CATAACTTA
*
90155065 CATACCTTA
1 CATAACTTA
*
90155074 CATAAATT-
1 CATAACTTA
* * *
90155082 TATATCATA
1 CATAACTTA
90155091 TCATAACTTA
1 -CATAACTTA
90155101 CATAACTTA
1 CATAACTTA
*
90155110 CAAAACTTA
1 CATAACTTA
*
90155119 CTTAACTTA
1 CATAACTTA
90155128 TGTAATACAT
Statistics
Matches: 191, Mismatches: 45, Indels: 38
0.70 0.16 0.14
Matches are distributed among these distances:
7 19 0.10
8 29 0.15
9 116 0.61
10 21 0.11
11 6 0.03
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:90154907 original size:52 final size:52
Alignment explanation
Indices: 90154848--90154981 Score: 232
Period size: 52 Copynumber: 2.6 Consensus size: 52
90154838 ATCTTAATGT
* * * *
90154848 TAAATATATATCATATCATAACTTACATAACTTATATACCTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
90154900 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
90154952 TAAATATATATCATATAATAACTTACATAA
1 TAAATATATATCATATAATAACTTACATAA
90154982 ATATATATCC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 78 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (52 bp):
TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
Found at i:90154986 original size:79 final size:79
Alignment explanation
Indices: 90154896--90155060 Score: 267
Period size: 79 Copynumber: 2.1 Consensus size: 79
90154886 CCTTACATAA
90154896 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
1 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
90154961 ATCATATAATAACT
66 ATCATATAATAACT
* * **
90154975 TACATAAATATATATCCTATAATAACTTACATAACTTACATAACTTATGTAATACATAAATATAT
1 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
* * *
90155040 TTCATATCATAATT
66 ATCATATAATAACT
90155054 TACATAA
1 TACATAA
90155061 CTTACATACC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.36
Consensus pattern (79 bp):
TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
ATCATATAATAACT
Found at i:90155096 original size:79 final size:79
Alignment explanation
Indices: 90154896--90155100 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
90154886 CCTTACATAA
* * * * * **
90154896 TACATAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATAT
1 TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
90154961 ATCATATAATAACT
66 ATCATATAATAACT
* * *
90154975 TACATAAATATATATCCTATAATAACTTACATAACTTACATAACTTATGTAATACATAAATATAT
1 TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
* * *
90155040 TTCATATCATAATT
66 ATCATATAATAACT
* * *
90155054 TACATAACTTACATA-CCT-TACATAAATT-TATATCATATCATAACTTA
1 TACATAA-ATACATATCCTATA-ATAAATTACATAACATA-CATAACTTA
90155101 CATAACTTAC
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 8 0.07
79 97 0.88
80 5 0.05
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.37
Consensus pattern (79 bp):
TACATAAATACATATCCTATAATAAATTACATAACATACATAACTTATGTAATACATAAATATAT
ATCATATAATAACT
Found at i:90157516 original size:23 final size:23
Alignment explanation
Indices: 90157490--90157535 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
90157480 TGAGAAAGTA
90157490 CATGATCGAGCCACTTTGACTTT
1 CATGATCGAGCCACTTTGACTTT
*
90157513 CATGATCGAGCCGCTTTGACTTT
1 CATGATCGAGCCACTTTGACTTT
90157536 ATGCAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (23 bp):
CATGATCGAGCCACTTTGACTTT
Found at i:90160984 original size:33 final size:33
Alignment explanation
Indices: 90160942--90161022 Score: 103
Period size: 31 Copynumber: 2.5 Consensus size: 33
90160932 TTAGATTAAA
* * *
90160942 TGTTTTTGGTTGTATTTTTTATGCTACATTTGT
1 TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
*
90160975 TGTTTTTGGTTGGA--TTTCATGCTATATTTGC
1 TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
*
90161006 TATTTTTGGTTGGATTT
1 TGTTTTTGGTTGGATTT
90161023 AATGCAGGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 27 0.66
33 14 0.34
ACGTcount: A:0.12, C:0.06, G:0.21, T:0.60
Consensus pattern (33 bp):
TGTTTTTGGTTGGATTTTTCATGCTACATTTGC
Found at i:90161125 original size:43 final size:43
Alignment explanation
Indices: 90161099--90161251 Score: 207
Period size: 43 Copynumber: 3.5 Consensus size: 43
90161089 GTAACAAATG
90161099 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
* * *
90161142 CGCCACTAAAAGCCAAGACTTTTAGCAGCGCTTCCCCCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
* ** * **
90161185 CGCCGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCAATGAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
*
90161228 CGCCGCTAAAAGTCATGATCTTTT
1 CGCCGCTAAAAGCCATGA-CTTTT
90161252 GTGGCTTTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
43 91 0.95
44 5 0.05
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (43 bp):
CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCCACAAA
Found at i:90163269 original size:40 final size:40
Alignment explanation
Indices: 90163218--90163360 Score: 148
Period size: 41 Copynumber: 3.5 Consensus size: 40
90163208 TGTATATGTG
*
90163218 TGTGGCACTTAGTGTACGA-TTTGGAGTAGCTTCGGCTATA
1 TGTGGCACTTAGTGTGCGAGTTT-GAGTAGCTTCGGCTATA
** * *
90163258 TGTGGCACTTAGTGTGCGAGACTGAGATAGCTTTGGCTATG
1 TGTGGCACTTAGTGTGCGAGTTTGAG-TAGCTTCGGCTATA
*
90163299 TGAT-GCACTTAGTGTGTGAGGTTATGA-TAGCTTCGGCTATGA
1 TG-TGGCACTTAGTGTGCGA-GTT-TGAGTAGCTTCGGCTAT-A
*
90163341 TATGGCACTTAGTGTGCGAG
1 TGTGGCACTTAGTGTGCGAG
90163361 ATATCGAATA
Statistics
Matches: 84, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
40 21 0.25
41 43 0.51
42 17 0.20
43 3 0.04
ACGTcount: A:0.20, C:0.14, G:0.32, T:0.34
Consensus pattern (40 bp):
TGTGGCACTTAGTGTGCGAGTTTGAGTAGCTTCGGCTATA
Found at i:90165039 original size:21 final size:21
Alignment explanation
Indices: 90165015--90165057 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
90165005 TACATCTTTA
90165015 ATAATTTCATATCAACAATCC
1 ATAATTTCATATCAACAATCC
90165036 ATAATTTCATATCAACAATCC
1 ATAATTTCATATCAACAATCC
90165057 A
1 A
90165058 CTCTTATGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATTTCATATCAACAATCC
Found at i:90166014 original size:26 final size:28
Alignment explanation
Indices: 90165955--90166014 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
90165945 TGCAATGAGA
*
90165955 TCGCACACTTAGTGCTTGATAGTTTTACT
1 TCGCACACTTAGTGCTT-ATAGTTTAACT
90165984 TCGCACACTTAGTGC-TATTA-TTTAAC-
1 TCGCACACTTAGTGCTTA-TAGTTTAACT
90166010 TCGCA
1 TCGCA
90166015 ATGCAATGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.17
27 6 0.21
28 3 0.10
29 15 0.52
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (28 bp):
TCGCACACTTAGTGCTTATAGTTTAACT
Found at i:90166039 original size:26 final size:26
Alignment explanation
Indices: 90166010--90166061 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
90166000 ATTATTTAAC
90166010 TCGCAATGCAATGAGATCGCACACTT
1 TCGCAATGCAATGAGATCGCACACTT
90166036 TCGCAATGCAATGAGATCGCACACTT
1 TCGCAATGCAATGAGATCGCACACTT
90166062 AGTGCTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (26 bp):
TCGCAATGCAATGAGATCGCACACTT
Found at i:90176677 original size:21 final size:20
Alignment explanation
Indices: 90176651--90176690 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
90176641 TGAAATGTGT
90176651 GAATAT-ATATAAGCTATGGCC
1 GAATATGAT-TAAGCT-TGGCC
90176672 GAATATGATTAAGCTTGGC
1 GAATATGATTAAGCTTGGC
90176691 TATTATATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 12 0.67
22 2 0.11
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (20 bp):
GAATATGATTAAGCTTGGCC
Found at i:90186782 original size:44 final size:44
Alignment explanation
Indices: 90186691--90186812 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 44
90186681 CAACGCCATC
* * *
90186691 GTCCCA-AATGTGGTCTTACATGT-AATCACGTATCGATGCGACT
1 GTCCCAGAA-GTGGTCTTACACGTAAATCACATATCGATGCAACT
*
90186734 GTCCCAGACAG-GGTCTTACACGTAAATCACAAATCGATGCCAAC-
1 GTCCCAGA-AGTGGTCTTACACGTAAATCACATATCGATG-CAACT
* *
90186778 GTCCCAGATGTGGTCTTACAC-AAAATCACATATCG
1 GTCCCAGAAGTGGTCTTACACGTAAATCACATATCG
90186813 GAACCCTATG
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
43 30 0.45
44 33 0.49
45 4 0.06
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (44 bp):
GTCCCAGAAGTGGTCTTACACGTAAATCACATATCGATGCAACT
Found at i:90197863 original size:44 final size:43
Alignment explanation
Indices: 90197766--90197866 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 43
90197756 CCAACGTCCT
* * * *
90197766 AGATGTGGTCTTACATGTAATCACATATCGATACCACTATCCC
1 AGATATGGTCTTACACGTAATCACAAATCGATACCAATATCCC
* * * *
90197809 AGATAGGGTCTTACACGTAAATCATAAATCGATGCCAATGTCCC
1 AGATATGGTCTTACACGT-AATCACAAATCGATACCAATATCCC
90197853 AGACT-TGGTCTTAC
1 AGA-TATGGTCTTAC
90197867 GCAAAATCAC
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
43 15 0.32
44 31 0.66
45 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (43 bp):
AGATATGGTCTTACACGTAATCACAAATCGATACCAATATCCC
Found at i:90213848 original size:41 final size:40
Alignment explanation
Indices: 90213745--90213863 Score: 211
Period size: 40 Copynumber: 3.0 Consensus size: 40
90213735 TAGAAAAAAA
90213745 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
90213785 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
90213825 TATAACTCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAAC-CGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
90213864 GTTACATCCG
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
40 46 0.61
41 30 0.39
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:90217230 original size:39 final size:39
Alignment explanation
Indices: 90217176--90217254 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
90217166 TATCACTATG
* *
90217176 AGTAATGTTGTTACTATTATATAATAATCCAAGAAACAT
1 AGTAATATTGTTACTATTATATAAAAATCCAAGAAACAT
90217215 AGTAATATTGTTACTATTATATAAAAATCCAAGAAACAT
1 AGTAATATTGTTACTATTATATAAAAATCCAAGAAACAT
90217254 A
1 A
90217255 CTCATAGCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (39 bp):
AGTAATATTGTTACTATTATATAAAAATCCAAGAAACAT
Found at i:90219823 original size:25 final size:25
Alignment explanation
Indices: 90219795--90219843 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
90219785 TTCGTTTGCT
*
90219795 GGTGAAAGGCAATACTGAAGTTTAG
1 GGTGAAAGGAAATACTGAAGTTTAG
90219820 GGTGAAAGGAAATACTGAAGTTTA
1 GGTGAAAGGAAATACTGAAGTTTA
90219844 ATCTCGTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.06, G:0.31, T:0.24
Consensus pattern (25 bp):
GGTGAAAGGAAATACTGAAGTTTAG
Found at i:90223241 original size:74 final size:69
Alignment explanation
Indices: 90223150--90223322 Score: 231
Period size: 74 Copynumber: 2.4 Consensus size: 69
90223140 ACAAACTTTA
* * *
90223150 TTATTTAAATTGCAAAAACCCCTAAAATTAATAATTGAAATGGTAAAAAAGTCATTACATAAATA
1 TTATTTAAATTGAAAAAACCCCTAAAATTAATAACTAAAATGG-AAAAAAGTCATTACATAAATA
*
90223215 TAAAG
65 CAAAG
90223220 TTGACTATTTAAATTGAAAAAACCCGCTAAAATTAATAACTAAAATGGAAAAAAGTCATTACATA
1 -T---TATTTAAATTGAAAAAACCC-CTAAAATTAATAACTAAAATGGAAAAAAGTCATTACATA
90223285 AATACAAAG
61 AATACAAAG
*
90223294 TTATTTAAATT-ACAAAACCCCCTAAAATT
1 TTATTTAAATTGA-AAAAACCCCTAAAATT
90223323 GATGATTTGA
Statistics
Matches: 92, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
69 9 0.10
70 17 0.18
71 1 0.01
73 1 0.01
74 44 0.48
75 20 0.22
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.29
Consensus pattern (69 bp):
TTATTTAAATTGAAAAAACCCCTAAAATTAATAACTAAAATGGAAAAAAGTCATTACATAAATAC
AAAG
Found at i:90225562 original size:14 final size:16
Alignment explanation
Indices: 90225528--90225561 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
90225518 AAAGTCAAAT
90225528 AAAATTACATTATAAA
1 AAAATTACATTATAAA
90225544 AAAATTACATTA-AAA
1 AAAATTACATTATAAA
90225559 AAA
1 AAA
90225562 TCACAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATTACATTATAAA
Found at i:90225784 original size:102 final size:102
Alignment explanation
Indices: 90225526--90226126 Score: 629
Period size: 102 Copynumber: 6.1 Consensus size: 102
90225516 TAAAAGTCAA
* * * ** *
90225526 ATAAAATTACATTATAAAAAAATTACATTA--AAAAAATCACAAAATGCTAAACTAAACACCAAC
1 ATAAAATTA-TTTTTAAAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAAC
* *
90225589 AATTTATATAACCTAATAATAAATTACTAACAATATAACT
65 AA-TT-TATAACCTAATCATAAATTACTAACAAAATAACT
* *
90225629 ATAAAATTACTTTTTAAATAAA-TTACATTACTAAACACTCACAAAAC-CTTAAACTAAACACTA
1 ATAAAATTA-TTTTTAAA-AAATTTACATTACTAAAAAATCACAAAACAC-TAAACTAAACACTA
*
90225692 ACAATTTATAACCTAATCATAAATAACTAGA-AAAATAACT
63 ACAATTTATAACCTAATCATAAATTACTA-ACAAAATAACT
90225732 ATAAAATTATTTTTAAAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACA
1 ATAAAATTATTTTTAAAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACA
* *
90225797 ATTTATAATCTAATCATAAATTACTAGCAAAATAACT
66 ATTTATAACCTAATCATAAATTACTAACAAAATAACT
** * * *
90225834 ATAAAATTATTTTT-TTAAATTTACATTAATAAAAAATCAGAAAACACTAAACTAAACATTAACA
1 ATAAAATTATTTTTAAAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACA
*
90225898 ATTTATAACCTAATCATAAATTACTAATAAAATAACT
66 ATTTATAACCTAATCATAAATTACTAACAAAATAACT
** * ** *
90225935 AT--AATT-TTTTTTCAAAATTTACATTACTAAAAACTCACAGGACAC---A--AAACACTAAAA
1 ATAAAATTATTTTTAAAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACA
*
90225992 AATTATAACCTAATCATAAATTACTAACAAAATAA-T
66 ATTTATAACCTAATCATAAATTACTAACAAAATAACT
** * * * * * *
90226028 -TACCA--A-----AATAAATTTACAATAATAAAGAATCAAAAAATACTAAACTAAACAC-AACA
1 ATAAAATTATTTTTAAAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACA
* * * *
90226084 ATTTATAACATAATCCTAAATTACAAACAAAATAATT
66 ATTTATAACCTAATCATAAATTACTAACAAAATAACT
90226121 ATAAAA
1 ATAAAA
90226127 GAAAACCAAA
Statistics
Matches: 427, Mismatches: 52, Indels: 47
0.81 0.10 0.09
Matches are distributed among these distances:
88 23 0.05
91 1 0.00
92 35 0.08
93 8 0.02
94 46 0.11
96 1 0.00
98 5 0.01
99 30 0.07
101 84 0.20
102 95 0.22
103 63 0.15
104 7 0.02
105 29 0.07
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (102 bp):
ATAAAATTATTTTTAAAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACA
ATTTATAACCTAATCATAAATTACTAACAAAATAACT
Found at i:90226208 original size:14 final size:14
Alignment explanation
Indices: 90226189--90226218 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
90226179 ACTAAACATA
90226189 AATAATTTATAGAT
1 AATAATTTATAGAT
90226203 AATAATTTATAGAT
1 AATAATTTATAGAT
90226217 AA
1 AA
90226219 AAATCCAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (14 bp):
AATAATTTATAGAT
Found at i:90228166 original size:25 final size:25
Alignment explanation
Indices: 90228138--90228188 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
90228128 TCCAGTTGCT
*
90228138 AGGAAAGGCATTCCTATGATTATTG
1 AGGAAAGGCATTCCTAGGATTATTG
*
90228163 AGGAAAGGCCTTCCTAGGATTATTG
1 AGGAAAGGCATTCCTAGGATTATTG
90228188 A
1 A
90228189 CACCATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (25 bp):
AGGAAAGGCATTCCTAGGATTATTG
Found at i:90231523 original size:27 final size:26
Alignment explanation
Indices: 90231493--90231565 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 26
90231483 GGTGGCTACA
90231493 CCACAATTATCTGATCTGGT-AGCTCTG
1 CCAC-ATTATCTGATCTGGTGA-CTCTG
* *
90231520 CCACGATTTTTTGTATCTGGTGACTCTG
1 CCAC-ATTATCTG-ATCTGGTGACTCTG
* *
90231548 TCACATTATCTGTTCTGG
1 CCACATTATCTGATCTGG
90231566 CAGCCATGCT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
26 5 0.14
27 16 0.43
28 15 0.41
29 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (26 bp):
CCACATTATCTGATCTGGTGACTCTG
Found at i:90235095 original size:27 final size:28
Alignment explanation
Indices: 90235035--90235088 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
90235025 TAAAATAATT
*
90235035 AAAATTAATTATGTTAATAATTTAAGTG
1 AAAATTAATTATGTTAATAATTAAAGTG
*
90235063 AAAATTAATTAT-TTTATAATTAAAGT
1 AAAATTAATTATGTTAATAATTAAAGT
90235089 ATGAATTTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (28 bp):
AAAATTAATTATGTTAATAATTAAAGTG
Found at i:90238806 original size:22 final size:22
Alignment explanation
Indices: 90238752--90238793 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
90238742 AAGTGGATGA
90238752 TATTAATGGTATTTCATTAAGG
1 TATTAATGGTATTTCATTAAGG
90238774 TATTAATGGTATTTCATTAA
1 TATTAATGGTATTTCATTAA
90238794 AGTTATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (22 bp):
TATTAATGGTATTTCATTAAGG
Found at i:90240276 original size:12 final size:10
Alignment explanation
Indices: 90240244--90240277 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
90240234 TAGGTTTGAT
90240244 TATGTGCATA
1 TATGTGCATA
90240254 TATGTGCATA
1 TATGTGCATA
90240264 TATGTGCATA
1 TATGTGCATA
90240274 TATG
1 TATG
90240278 GTTGATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (10 bp):
TATGTGCATA
Found at i:90247816 original size:43 final size:43
Alignment explanation
Indices: 90247620--90247793 Score: 305
Period size: 43 Copynumber: 4.1 Consensus size: 43
90247610 AAAAACTGGT
* **
90247620 GGCGTTT-ATTAAAAAAAGCCGCTAAAAGTCGTGGCCTTTAGC
1 GGCGTTTGAATAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGC
*
90247662 GGCGTTTGAAGAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGC
1 GGCGTTTGAATAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGC
90247705 GGCGTTTGAATAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGC
1 GGCGTTTGAATAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGC
90247748 GGCGTTTGAATAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGC
1 GGCGTTTGAATAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGC
90247791 GGC
1 GGC
90247794 CATTTTCCCA
Statistics
Matches: 126, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
42 7 0.06
43 119 0.94
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (43 bp):
GGCGTTTGAATAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGC
Found at i:90248237 original size:24 final size:21
Alignment explanation
Indices: 90248173--90248231 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
90248163 CTATGCTCTA
* *
90248173 CCTCCCTCGCTGTTGCCCCTG
1 CCTCCCTCGCTGCTGCCGCTG
90248194 CCTCCCTCGCTGCTGCCGCTG
1 CCTCCCTCGCTGCTGCCGCTG
*
90248215 CCTCCCTCTCTGCTGCC
1 CCTCCCTCGCTGCTGCC
90248232 TCCGCTCTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.00, C:0.54, G:0.19, T:0.27
Consensus pattern (21 bp):
CCTCCCTCGCTGCTGCCGCTG
Found at i:90248668 original size:13 final size:14
Alignment explanation
Indices: 90248643--90248671 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
90248633 TGATGAATTG
90248643 AATTAAACAATTAT
1 AATTAAACAATTAT
90248657 AATTAAAC-ATTAT
1 AATTAAACAATTAT
90248670 AA
1 AA
90248672 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:90248875 original size:16 final size:17
Alignment explanation
Indices: 90248838--90248876 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
90248828 AAAATATTAT
*
90248838 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
90248855 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
90248871 TTAATA
1 TTAATA
90248877 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:90253894 original size:34 final size:34
Alignment explanation
Indices: 90253858--90253999 Score: 110
Period size: 34 Copynumber: 4.1 Consensus size: 34
90253848 GTTATGTATG
90253858 ATATGATATATATTTAAGT-ATTATGTAAGTTAT
1 ATATGATATATATTTAAGTAATTATGTAAGTTAT
* * *
90253891 GATATGATATATATTTATGTAAATTATAT-ATTTAT
1 -ATATGATATATATTTAAGT-AATTATGTAAGTTAT
* * * * * * *
90253926 CTAAGTTGTATAAGTTATGTAAGTTATGTAAATTAT
1 ATATGATATAT-ATTTAAGTAA-TTATGTAAGTTAT
* *
90253962 AATATAAAATATATTTAAGT-ATTATGTAAGTTAT
1 -ATATGATATATATTTAAGTAATTATGTAAGTTAT
90253996 ATAT
1 ATAT
90254000 TTATCTAAGT
Statistics
Matches: 83, Mismatches: 19, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
33 4 0.05
34 39 0.47
35 18 0.22
36 17 0.20
37 5 0.06
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (34 bp):
ATATGATATATATTTAAGTAATTATGTAAGTTAT
Found at i:90253948 original size:9 final size:9
Alignment explanation
Indices: 90253878--90254049 Score: 54
Period size: 9 Copynumber: 19.6 Consensus size: 9
90253868 TATTTAAGTA
90253878 TTATGTAAG
1 TTATGTAAG
*
90253887 TTATGATATG
1 TTATG-TAAG
* * *
90253897 ATATAT-AT
1 TTATGTAAG
*
90253905 TTATGTAAA
1 TTATGTAAG
* *
90253914 TTATAT-AT
1 TTATGTAAG
*
90253922 TTATCTAAG
1 TTATGTAAG
* *
90253931 TTGTATAAG
1 TTATGTAAG
90253940 TTATGTAAG
1 TTATGTAAG
*
90253949 TTATGTAAA
1 TTATGTAAG
90253958 TTA--TAA-
1 TTATGTAAG
* *
90253964 -TAT-AAAA
1 TTATGTAAG
*
90253971 TATATTTAAG
1 T-TATGTAAG
90253981 TATTATGTAAG
1 T--TATGTAAG
* *
90253992 TTATAT-AT
1 TTATGTAAG
*
90254000 TTATCTAAG
1 TTATGTAAG
*
90254009 TTATATAAG
1 TTATGTAAG
*
90254018 TTATGTACG
1 TTATGTAAG
*
90254027 TTTTGTAAG
1 TTATGTAAG
* *
90254036 TTATATAAA
1 TTATGTAAG
90254045 TTATG
1 TTATG
90254050 ATATCAAATA
Statistics
Matches: 118, Mismatches: 35, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
5 2 0.02
6 2 0.02
7 3 0.03
8 16 0.14
9 78 0.66
10 9 0.08
11 8 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:90254008 original size:17 final size:17
Alignment explanation
Indices: 90253983--90254015 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
90253973 TATTTAAGTA
*
90253983 TTATGTAAGTTATATAT
1 TTATCTAAGTTATATAT
90254000 TTATCTAAGTTATATA
1 TTATCTAAGTTATATA
90254016 AGTTATGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
TTATCTAAGTTATATAT
Found at i:90254173 original size:15 final size:15
Alignment explanation
Indices: 90254153--90254208 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
90254143 AAGTAGCGGG
90254153 ATTAAATAATATTTA
1 ATTAAATAATATTTA
90254168 ATTAAATAATATTT-
1 ATTAAATAATATTTA
90254182 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
90254197 ATTAAGTAATAT
1 ATTAAATAATAT
90254209 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:90255217 original size:356 final size:358
Alignment explanation
Indices: 90254418--90255297 Score: 1647
Period size: 356 Copynumber: 2.5 Consensus size: 358
90254408 ATAAAACGGA
* *
90254418 GAATTTTTTAAGATTCATCATACGCGGAGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
90254483 CTCGATATAAGGCAACCCGCCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
*
90254548 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
90254613 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
90254678 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
261 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
90254743 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
*
90254776 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
90254841 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
90254906 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
90254971 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGC-AAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
90255035 TAATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
261 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
90255099 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
* * *
90255132 GAATTTTTTAAGATTTATCATACGTGGCGTTGTTACACTTAGGGAGAATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
90255197 CTCGATATAAGGCAACCCGTCAGGTTTCTAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
* *
90255262 AAGGTTGGAGAGAAGGTCATCCATTGCTGTAATTTT
131 AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTT
90255298 AATGGACAAG
Statistics
Matches: 510, Mismatches: 12, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
356 250 0.49
357 29 0.06
358 231 0.45
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (358 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
AAGGTTGGAGAGAAGGTCAACCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
Done.