Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 273 of 316
Found at i:90601872 original size:79 final size:79
Alignment explanation
Indices: 90601719--90601883 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
90601709 GGACTAAGAT
* * ** *
90601719 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
*
90601784 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
90601798 CCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCAAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-C
* *
90601861 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
90601877 CCGAAGG
1 CCGAAGG
90601884 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:90607129 original size:21 final size:21
Alignment explanation
Indices: 90607100--90607146 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
90607090 ATTTTTCCTA
*
90607100 GAATTTGAATTTGATTAAATT
1 GAATGTGAATTTGATTAAATT
*
90607121 GAATGTGAATTTTATTAAATT
1 GAATGTGAATTTGATTAAATT
90607142 -AATGT
1 GAATGT
90607147 TAAATTTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (21 bp):
GAATGTGAATTTGATTAAATT
Found at i:90607152 original size:21 final size:21
Alignment explanation
Indices: 90607107--90607153 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
90607097 CTAGAATTTG
*
90607107 AATTTGATTAAATTGAATGTG
1 AATTTGATTAAATTGAATGTA
*
90607128 AATTTTATTAAATT-AATGTTA
1 AATTTGATTAAATTGAATG-TA
90607149 AATTT
1 AATTT
90607154 ACTCGTATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (21 bp):
AATTTGATTAAATTGAATGTA
Found at i:90607154 original size:20 final size:21
Alignment explanation
Indices: 90607107--90607154 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
90607097 CTAGAATTTG
90607107 AATTTGATTAAATTGAATGTGA
1 AATTT-ATTAAATTGAATGTGA
* *
90607129 ATTTTATTAAATT-AATGTTA
1 AATTTATTAAATTGAATGTGA
90607149 AATTTA
1 AATTTA
90607155 CTCGTATAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 11 0.48
21 8 0.35
22 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (21 bp):
AATTTATTAAATTGAATGTGA
Found at i:90609516 original size:26 final size:26
Alignment explanation
Indices: 90609480--90609533 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
90609470 CATCACAAGA
90609480 GTAAGATTACTCTCCTTATAGTTTAT
1 GTAAGATTACTCTCCTTATAGTTTAT
90609506 GTAAGATTACTCTCCTTATAGTTTAT
1 GTAAGATTACTCTCCTTATAGTTTAT
90609532 GT
1 GT
90609534 TGATGACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (26 bp):
GTAAGATTACTCTCCTTATAGTTTAT
Found at i:90610547 original size:20 final size:20
Alignment explanation
Indices: 90610522--90610561 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
90610512 ACAACATTGA
*
90610522 ATAGTTAATCTTTAGGGATT
1 ATAGTTAATCTTTAGAGATT
* *
90610542 ATAGTTGATTTTTAGAGATT
1 ATAGTTAATCTTTAGAGATT
90610562 CTAATTAGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (20 bp):
ATAGTTAATCTTTAGAGATT
Found at i:90615668 original size:47 final size:47
Alignment explanation
Indices: 90615614--90615707 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
90615604 AAAAAAAGAG
*
90615614 TAAGTATATATTATCCTTGAGAAATAAAATACTAATTACTAATTAAT
1 TAAGTATATATCATCCTTGAGAAATAAAATACTAATTACTAATTAAT
90615661 TAAGTATATATCATCCTTGAGAAATAAAATACTAATTACTAATTAAT
1 TAAGTATATATCATCCTTGAGAAATAAAATACTAATTACTAATTAAT
90615708 CGATTAATGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (47 bp):
TAAGTATATATCATCCTTGAGAAATAAAATACTAATTACTAATTAAT
Found at i:90618304 original size:27 final size:27
Alignment explanation
Indices: 90618274--90618329 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
90618264 ATTATGATAG
90618274 TAAATAATAACATGTAATTACCCTTAT
1 TAAATAATAACATGTAATTACCCTTAT
90618301 TAAATAATAACATGTAATTACCCTTAT
1 TAAATAATAACATGTAATTACCCTTAT
90618328 TA
1 TA
90618330 TATATGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.38
Consensus pattern (27 bp):
TAAATAATAACATGTAATTACCCTTAT
Found at i:90628656 original size:22 final size:22
Alignment explanation
Indices: 90628631--90628708 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
90628621 TTTATAACAC
90628631 TTTCAATTCTCATATCATACTG
1 TTTCAATTCTCATATCATACTG
* * **
90628653 TTTCAA-TATCAT-TTATAACAC
1 TTTCAATTCTCATATCAT-ACTG
90628674 TTTCAATTCTCATATCATACTG
1 TTTCAATTCTCATATCATACTG
90628696 TTTCAATT-TCATA
1 TTTCAATTCTCATA
90628709 ATTTCTATTC
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
20 3 0.07
21 18 0.40
22 21 0.47
23 3 0.07
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.46
Consensus pattern (22 bp):
TTTCAATTCTCATATCATACTG
Found at i:90628665 original size:43 final size:43
Alignment explanation
Indices: 90628617--90628707 Score: 173
Period size: 43 Copynumber: 2.1 Consensus size: 43
90628607 TCATAAATGC
90628617 ATCATTTATAACACTTTCAATTCTCATATCATACTGTTTCAAT
1 ATCATTTATAACACTTTCAATTCTCATATCATACTGTTTCAAT
90628660 ATCATTTATAACACTTTCAATTCTCATATCATACTGTTTCAAT
1 ATCATTTATAACACTTTCAATTCTCATATCATACTGTTTCAAT
*
90628703 TTCAT
1 ATCAT
90628708 AATTTCTATT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (43 bp):
ATCATTTATAACACTTTCAATTCTCATATCATACTGTTTCAAT
Found at i:90628677 original size:21 final size:21
Alignment explanation
Indices: 90628617--90628680 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
90628607 TCATAAATGC
90628617 ATCATTTATAACACTTTCAATT
1 ATCATTTATAACACTTTCAA-T
* * **
90628639 CTCATATCAT-ACTGTTTCAAT
1 ATCAT-TTATAACACTTTCAAT
90628660 ATCATTTATAACACTTTCAAT
1 ATCATTTATAACACTTTCAAT
90628681 TCTCATATCA
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
20 3 0.09
21 14 0.44
22 12 0.38
23 3 0.09
ACGTcount: A:0.34, C:0.20, G:0.02, T:0.44
Consensus pattern (21 bp):
ATCATTTATAACACTTTCAAT
Found at i:90630044 original size:17 final size:18
Alignment explanation
Indices: 90630008--90630046 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
90629998 TGGCTATTCA
*
90630008 GTTTCTTTTCATTCTTTT
1 GTTTCCTTTCATTCTTTT
*
90630026 GTTTCCTTT-ATTTTTTT
1 GTTTCCTTTCATTCTTTT
90630043 GTTT
1 GTTT
90630047 AATTCTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.05, C:0.13, G:0.08, T:0.74
Consensus pattern (18 bp):
GTTTCCTTTCATTCTTTT
Found at i:90630067 original size:8 final size:8
Alignment explanation
Indices: 90630054--90630096 Score: 61
Period size: 8 Copynumber: 5.4 Consensus size: 8
90630044 TTTAATTCTA
90630054 ATAATAAT
1 ATAATAAT
90630062 ATAATAAT
1 ATAATAAT
90630070 ATAATAAT
1 ATAATAAT
*
90630078 ATAATATT
1 ATAATAAT
90630086 A-ATATAAT
1 ATA-ATAAT
90630094 ATA
1 ATA
90630097 TTTACTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
7 1 0.03
8 29 0.94
9 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATAATAAT
Found at i:90630270 original size:19 final size:21
Alignment explanation
Indices: 90630248--90630289 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
90630238 ATTAAGTATT
*
90630248 TACTTTTATA-ATTATTT-TA
1 TACTTATATACATTATTTGTA
90630267 TACTTATATACATTATTTGTA
1 TACTTATATACATTATTTGTA
90630288 TA
1 TA
90630290 AATATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 7 0.35
21 4 0.20
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (21 bp):
TACTTATATACATTATTTGTA
Found at i:90630295 original size:21 final size:19
Alignment explanation
Indices: 90630254--90630296 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
90630244 TATTTACTTT
**
90630254 TATAATTATTTTATACTTA
1 TATAATTATTTTATAAATA
90630273 TATACATTATTTGTATAAATA
1 TATA-ATTATTT-TATAAATA
90630294 TAT
1 TAT
90630297 TTCATTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 7 0.35
21 9 0.45
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (19 bp):
TATAATTATTTTATAAATA
Found at i:90631518 original size:18 final size:17
Alignment explanation
Indices: 90631495--90631533 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
90631485 CTACACGGGC
*
90631495 TAGGCCAAATTGGGCGTG
1 TAGGCCAAA-CGGGCGTG
*
90631513 TAGGCCACACGGGCGTG
1 TAGGCCAAACGGGCGTG
90631530 TAGG
1 TAGG
90631534 TTTTCGGCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.21, C:0.21, G:0.41, T:0.18
Consensus pattern (17 bp):
TAGGCCAAACGGGCGTG
Found at i:90637503 original size:6 final size:6
Alignment explanation
Indices: 90637440--90637515 Score: 73
Period size: 6 Copynumber: 12.5 Consensus size: 6
90637430 AATAAAGTTT
* * * *
90637440 AAAATA GAAAA-A CAAAATA AACATA AATATA CAAATA CAAATA AAAATA
1 AAAATA -AAAATA -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
90637489 AAGATA AAAAGA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
90637516 CAAATTGACT
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
6 53 0.91
7 5 0.09
ACGTcount: A:0.76, C:0.05, G:0.04, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:90638492 original size:46 final size:46
Alignment explanation
Indices: 90638430--90638794 Score: 561
Period size: 46 Copynumber: 7.9 Consensus size: 46
90638420 TTTGACATGA
* * * * * *
90638430 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* * *** *
90638476 TTCCATGGTATCTTTCAACCATAGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
90638522 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
90638568 TGTCAGGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
90638614 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
90638660 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
90638706 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
90638752 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
90638795 AAGAGCACAC
Statistics
Matches: 294, Mismatches: 24, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
45 4 0.01
46 290 0.99
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:90648451 original size:52 final size:49
Alignment explanation
Indices: 90648266--90648458 Score: 209
Period size: 47 Copynumber: 4.0 Consensus size: 49
90648256 TGCACATAGT
* ** * *
90648266 CACATATCACA-TACCGAGGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACACT-CCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
90648314 CACATATCACACT--GATGCCATATCCCAGATATGGTCTTATACGGTAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
90648361 CACATATCACA--CCGATGCCATATCCCGGATATGGTCTTATACGGAAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
90648408 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAA
1 CACATATCACA---CTCCGATGCCATAGCCCAGATATGGTCTTATACGGAA
90648459 ATTACATTTC
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
46 26 0.21
47 55 0.44
48 11 0.09
49 1 0.01
52 31 0.25
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.24
Consensus pattern (49 bp):
CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
Found at i:90658999 original size:15 final size:15
Alignment explanation
Indices: 90658963--90659001 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
90658953 ATTAGCATGC
90658963 ATATTTT-TTTTTTA
1 ATATTTTATTTTTTA
90658977 A-ATATTTATTTTTTA
1 ATAT-TTTATTTTTTA
90658992 ATATTTTATT
1 ATATTTTATT
90659002 ATGCCCTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.09
14 4 0.18
15 14 0.64
16 2 0.09
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
ATATTTTATTTTTTA
Found at i:90663846 original size:65 final size:67
Alignment explanation
Indices: 90663770--90663939 Score: 245
Period size: 65 Copynumber: 2.5 Consensus size: 67
90663760 AAATTATTAA
* *
90663770 GTAAATATTTATCAAAACAACGTAATTTTACTTTTAACTTTATAGTTTTGAGTTTTAACTTT-T-
1 GTAAATATTTATCAAAATAACGTAATTTTACTTTTAACTTTATAGTTTTGACTTTTAACTTTATA
90663833 AG
66 AG
*
90663835 GTAAATATTTATCAAAATAACGTAATTTTACTTTTAACTTTATAGTTTTGACTTTTAATTTTAAA
1 GTAAATATTTATCAAAATAACGTAATTTTACTTTTAACTTTATAGTTTTGACTTTTAACTTT--A
90663900 TAAG
64 TAAG
* * *
90663904 GTAAACATTTATTAAAATGACGTAATTTTATCTTTT
1 GTAAATATTTATCAAAATAACGTAATTTTA-CTTTT
90663940 CTTATTTAGA
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
65 59 0.63
68 1 0.01
69 29 0.31
70 5 0.05
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (67 bp):
GTAAATATTTATCAAAATAACGTAATTTTACTTTTAACTTTATAGTTTTGACTTTTAACTTTATA
AG
Found at i:90664096 original size:16 final size:17
Alignment explanation
Indices: 90664075--90664107 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
90664065 CTTGTTAGAG
90664075 CATATAAATTTG-AAAC
1 CATATAAATTTGTAAAC
*
90664091 CATATATATTTGTAAAC
1 CATATAAATTTGTAAAC
90664108 TGTTTAAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (17 bp):
CATATAAATTTGTAAAC
Found at i:90670004 original size:21 final size:22
Alignment explanation
Indices: 90669980--90670030 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
90669970 TTGAATTATA
*
90669980 TATTAATATA-TATTTTTATTT
1 TATTAATATATTATTTTAATTT
**
90670001 TATTTTTA-ATTATTTTAATTT
1 TATTAATATATTATTTTAATTT
90670022 T-TTAATATA
1 TATTAATATA
90670031 ACCATTTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTAATATATTATTTTAATTT
Found at i:90670078 original size:35 final size:33
Alignment explanation
Indices: 90670039--90670103 Score: 78
Period size: 35 Copynumber: 1.9 Consensus size: 33
90670029 TAACCATTTT
*
90670039 TTATTATATTATTAATTTGTGTA-TTGTTTTAAGAA
1 TTATTATAGTATT-ATTT-T-TATTTGTTTTAAGAA
*
90670074 TTATTTTAGTATTATTTTTATTTGTTTTAA
1 TTATTATAGTATTATTTTTATTTGTTTTAA
90670104 TATTTGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 2 0.07
33 10 0.37
34 4 0.15
35 11 0.41
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (33 bp):
TTATTATAGTATTATTTTTATTTGTTTTAAGAA
Found at i:90670107 original size:21 final size:20
Alignment explanation
Indices: 90670077--90670124 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
90670067 TTAAGAATTA
* *
90670077 TTTTAGTATTATTTTTATTT
1 TTTTAATATTATTTTTATGT
*
90670097 GTTTTAATATTTGTTTTTATGT
1 -TTTTAATA-TTATTTTTATGT
90670119 TTTTAA
1 TTTTAA
90670125 ATATATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (20 bp):
TTTTAATATTATTTTTATGT
Found at i:90670147 original size:26 final size:24
Alignment explanation
Indices: 90670103--90670151 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
90670093 ATTTGTTTTA
*
90670103 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
90670127 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
90670152 CTTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:90672585 original size:39 final size:39
Alignment explanation
Indices: 90672538--90672614 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
90672528 CGTTTGAATG
90672538 AAAAACGCCACTAAAGAATGAGTATTAGCGGCGCTTTTC
1 AAAAACGCCACTAAAGAATGAGTATTAGCGGCGCTTTTC
* *
90672577 AAAAACGCCGCTAAAGATTGAGTATTAGCGGCGCTTTT
1 AAAAACGCCACTAAAGAATGAGTATTAGCGGCGCTTTT
90672615 TTAAGAAACG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (39 bp):
AAAAACGCCACTAAAGAATGAGTATTAGCGGCGCTTTTC
Found at i:90672667 original size:40 final size:40
Alignment explanation
Indices: 90672538--90672714 Score: 132
Period size: 40 Copynumber: 4.4 Consensus size: 40
90672528 CGTTTGAATG
* * * *
90672538 AAAAACGCCACTAAAGA-ATGAGTATTAGCGGCGC-TTTTC
1 AAAAACGCCGCTAAAGATA-CACTATTAGCGGCGCTTTTTA
** *
90672577 AAAAACGCCGCTAAAGATTGAGTATTAGCGGCGCTTTTTTA
1 AAAAACGCCGCTAAAGATACACTATTAGCGGCGC-TTTTTA
*
90672618 AGAAACGCCGCTATAAG-TACACCT-TTAGCGGCGCTTTTTA
1 AAAAACGCCGCTA-AAGATACA-CTATTAGCGGCGCTTTTTA
* * ** *
90672658 AAAAACGCCGCTAATGCTTGATCT-TTAGTGGCG-TTTTTCA
1 AAAAACGCCGCTAAAGATACA-CTATTAGCGGCGCTTTTT-A
*
90672698 AAAAACGCCGCAAAAGA
1 AAAAACGCCGCTAAAGA
90672715 ATTTGCAAAA
Statistics
Matches: 115, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 38 0.33
40 45 0.39
41 28 0.24
42 4 0.03
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGATACACTATTAGCGGCGCTTTTTA
Found at i:90672813 original size:154 final size:154
Alignment explanation
Indices: 90672643--90672975 Score: 569
Period size: 155 Copynumber: 2.2 Consensus size: 154
90672633 AGTACACCTT
*
90672643 TAGCGGCGCTTTTTAAAAAACGCCGCTAATGCTTGATCTTTAGTGGCGTTTTTCAAAAAACGCCG
1 TAGCGGTGCTTTTTAAAAAACGCCGCTAATGCTTGATCTTTAGTGGCGTTTTTCAAAAAACGCCG
* *
90672708 CAAAAGAA-TTTGCAAAATGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGCGGTGCTTTTC
66 CAAAAGAATTTTGCAAAATGACGTCGCTTTGTATTGAGCTTTTAGTGGCTTTAGCGGCGCTTTTC
90672772 AAAAACACCGCTAAAGATCGAGTA
131 AAAAACACCGCTAAAGATCGAGTA
90672796 CTAGCGGTGCTTTTTAAAAAACGCCGCTAATGCTTGATCTTTAGTGGCGTTTTTCAAAAAACGCC
1 -TAGCGGTGCTTTTTAAAAAACGCCGCTAATGCTTGATCTTTAGTGGCGTTTTTCAAAAAACGCC
* *
90672861 GCAAAAGAATTTTTCAAAATGAGGTCGCTTTGTATTGAGCTTTTAGTGGCTTTAGCGGCGCTTTT
65 GCAAAAGAATTTTGCAAAATGACGTCGCTTTGTATTGAGCTTTTAGTGGCTTTAGCGGCGCTTTT
*
90672926 CAAAAACGCCGCTAAAGATCGAGTA
130 CAAAAACACCGCTAAAGATCGAGTA
* *
90672951 TAAGCGGTGTTTTTTAAGAAACGCC
1 T-AGCGGTGCTTTTTAAAAAACGCC
90672976 ACTATAAGTA
Statistics
Matches: 169, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
154 73 0.43
155 96 0.57
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (154 bp):
TAGCGGTGCTTTTTAAAAAACGCCGCTAATGCTTGATCTTTAGTGGCGTTTTTCAAAAAACGCCG
CAAAAGAATTTTGCAAAATGACGTCGCTTTGTATTGAGCTTTTAGTGGCTTTAGCGGCGCTTTTC
AAAAACACCGCTAAAGATCGAGTA
Found at i:90672993 original size:155 final size:154
Alignment explanation
Indices: 90672643--90673017 Score: 513
Period size: 155 Copynumber: 2.4 Consensus size: 154
90672633 AGTACACCTT
* * * ** *
90672643 TAGCGGCGCTTTTTAAAAAACGCCGCTAATGCTTGATCTTTAGTGGCGTTTTTCAAAAAACGCCG
1 TAGCGGTGCTTTTTAAAAAACGCCACTAAAGCTACACCTTTAGTGGCGTTTTTCAAAAAACGCCG
* *
90672708 CAAAAGAATTTGCAAAATGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGCGGTGCTTTTCA
66 CAAAAGAATTTGCAAAATGACGTCGCTTTGTATTGAGCTTTTAGTGGCTTTAGCGGCGCTTTTCA
90672773 AAAACACCGCTAAAGATCGAGTAC
131 AAAACACCGCTAAAGATCGAGTAC
* * ** *
90672797 TAGCGGTGCTTTTTAAAAAACGCCGCTAATGCTTGATCTTTAGTGGCGTTTTTCAAAAAACGCCG
1 TAGCGGTGCTTTTTAAAAAACGCCACTAAAGCTACACCTTTAGTGGCGTTTTTCAAAAAACGCCG
* *
90672862 CAAAAGAATTTTTCAAAATGAGGTCGCTTTGTATTGAGCTTTTAGTGGCTTTAGCGGCGCTTTTC
66 CAAAAGAA-TTTGCAAAATGACGTCGCTTTGTATTGAGCTTTTAGTGGCTTTAGCGGCGCTTTTC
*
90672927 AAAAACGCCGCTAAAGATCGAGTA-
130 AAAAACACCGCTAAAGATCGAGTAC
* * * *
90672951 TAAGCGGTGTTTTTTAAGAAACGCCACTATAAG-TACACCTTTAGAGGCGCTTTTT-AGAAAACG
1 T-AGCGGTGCTTTTTAAAAAACGCCACTA-AAGCTACACCTTTAGTGGCG-TTTTTCAAAAAACG
90673014 CCGC
63 CCGC
90673018 TAATGCTTGA
Statistics
Matches: 202, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
154 73 0.36
155 122 0.60
156 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (154 bp):
TAGCGGTGCTTTTTAAAAAACGCCACTAAAGCTACACCTTTAGTGGCGTTTTTCAAAAAACGCCG
CAAAAGAATTTGCAAAATGACGTCGCTTTGTATTGAGCTTTTAGTGGCTTTAGCGGCGCTTTTCA
AAAACACCGCTAAAGATCGAGTAC
Found at i:90673196 original size:21 final size:21
Alignment explanation
Indices: 90673172--90673213 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
90673162 AGAGATAGTA
90673172 TTAATTTTAAAATATTGAATT
1 TTAATTTTAAAATATTGAATT
*
90673193 TTAATTTTAAATTATTGAATT
1 TTAATTTTAAAATATTGAATT
90673214 AATTATCACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (21 bp):
TTAATTTTAAAATATTGAATT
Found at i:90673333 original size:21 final size:21
Alignment explanation
Indices: 90673308--90673360 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
90673298 GTTTAAAGGT
90673308 GGTTTAAGGGTT-GGGGTTTAA
1 GGTTTAAGGGTTAGGGG-TTAA
*
90673329 GGTTT-AGGTGTTAGGGGTTAG
1 GGTTTAAGG-GTTAGGGGTTAA
*
90673350 GGGTTAAGGGT
1 GGTTTAAGGGT
90673361 GATGGGTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 3 0.11
21 17 0.63
22 7 0.26
ACGTcount: A:0.17, C:0.00, G:0.47, T:0.36
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGGTTAA
Found at i:90673538 original size:7 final size:7
Alignment explanation
Indices: 90673526--90673551 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
90673516 TATCATTGTA
90673526 GTTTAGG
1 GTTTAGG
90673533 GTTTAGG
1 GTTTAGG
90673540 GTTTAGG
1 GTTTAGG
90673547 GTTTA
1 GTTTA
90673552 AAGTGTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:90673593 original size:15 final size:15
Alignment explanation
Indices: 90673575--90673604 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
90673565 ATTATTTTAA
*
90673575 GGTTTATGGATTATG
1 GGTTTAGGGATTATG
90673590 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
90673605 ATTTATAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:90673897 original size:14 final size:15
Alignment explanation
Indices: 90673880--90673916 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
90673870 GTATTTATTT
90673880 TTTAAAATTT-AAAA
1 TTTAAAATTTAAAAA
90673894 TTTAAAATTTAAAAA
1 TTTAAAATTTAAAAA
90673909 TTTAAAAT
1 TTTAAAAT
90673917 AAAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTAAAATTTAAAAA
Found at i:90673910 original size:8 final size:7
Alignment explanation
Indices: 90673880--90673916 Score: 65
Period size: 7 Copynumber: 5.1 Consensus size: 7
90673870 GTATTTATTT
90673880 TTTAAAA
1 TTTAAAA
90673887 TTTAAAA
1 TTTAAAA
90673894 TTTAAAA
1 TTTAAAA
90673901 TTTAAAAA
1 TTT-AAAA
90673909 TTTAAAA
1 TTTAAAA
90673916 T
1 T
90673917 AAAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TTTAAAA
Found at i:90673921 original size:14 final size:14
Alignment explanation
Indices: 90673880--90673943 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 14
90673870 GTATTTATTT
**
90673880 TTTAAAATTTAAAA
1 TTTAAAATAAAAAA
*
90673894 TTTAAAATTTAAAAA
1 TTTAAAA-TAAAAAA
90673909 TTTAAAATAAAAAA
1 TTTAAAATAAAAAA
*
90673923 -TAAAACATAAAAAA
1 TTTAAA-ATAAAAAA
*
90673937 CTTAAAA
1 TTTAAAA
90673944 ATTTAATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
13 4 0.09
14 22 0.51
15 17 0.40
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
TTTAAAATAAAAAA
Found at i:90677502 original size:19 final size:19
Alignment explanation
Indices: 90677443--90677503 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 19
90677433 TGAAAAATTA
*
90677443 TTTCTGGAAAAATGAATTACT
1 TTTCTGG-AAAATGATTTA-T
* * *
90677464 TTTCTGGAATA-GCTAATAT
1 TTTCTGGAAAATGAT-TTAT
90677483 TTTCTGGAAAATGATTTAT
1 TTTCTGGAAAATGATTTAT
90677502 TT
1 TT
90677504 ATAAATAAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
19 17 0.55
20 7 0.23
21 7 0.23
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (19 bp):
TTTCTGGAAAATGATTTAT
Found at i:90684783 original size:27 final size:24
Alignment explanation
Indices: 90684747--90684810 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 24
90684737 AAGTGAAAAC
90684747 ATTTCATATAATCACTTCATATAACTA
1 ATTT-ATATAATCA-TTCATAT-ACTA
* *
90684774 ATTCTATATAACTTATTCATATACTC
1 ATT-TATATAA-TCATTCATATACTA
90684800 ATTTATATAAT
1 ATTTATATAAT
90684811 TCTTTCGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
24 1 0.03
25 7 0.21
26 6 0.18
27 16 0.48
28 3 0.09
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (24 bp):
ATTTATATAATCATTCATATACTA
Found at i:90684784 original size:14 final size:14
Alignment explanation
Indices: 90684765--90684809 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
90684755 TAATCACTTC
90684765 ATATAACTAATTCT
1 ATATAACTAATTCT
*
90684779 ATATAACTTATTC-
1 ATATAACTAATTCT
*
90684792 ATAT-ACTCATT-T
1 ATATAACTAATTCT
90684804 ATATAA
1 ATATAA
90684810 TTCTTTCGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 10 0.37
13 5 0.19
14 12 0.44
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (14 bp):
ATATAACTAATTCT
Found at i:90685069 original size:6 final size:6
Alignment explanation
Indices: 90685058--90685082 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
90685048 ACAAAGTGTG
90685058 ACTGTA ACTGTA ACTGTA ACTGTA A
1 ACTGTA ACTGTA ACTGTA ACTGTA A
90685083 ATGCTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (6 bp):
ACTGTA
Found at i:90685912 original size:13 final size:13
Alignment explanation
Indices: 90685893--90685943 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
90685883 TAAACTAAAA
90685893 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
90685906 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
90685919 TTTTCAAAAGTAT
1 TTTTCAAAAGCAC
90685932 TTTTCAAAAGCA
1 TTTTCAAAAGCA
90685944 TTGCCAAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:90696193 original size:370 final size:371
Alignment explanation
Indices: 90695459--90696251 Score: 1064
Period size: 370 Copynumber: 2.1 Consensus size: 371
90695449 GAAGTGAAAA
* * ** *
90695459 GAAATTGCTAAAATCCTTACTTGCCA-TAGAGTAAACATCTCACGAACCACCCTTAGCAAAATCA
1 GAAATTGCTAAAATCCTTACTTGCTAGAAGAGTAAACGCCTCAAGAACCACCCTTAGCAAAATCA
90695523 CAACTAATGAAACCAAAAGACCCTACAAAGATATCAAAACAACCACCCTAAAATGAAACTAACGA
66 CAACTAATGAAACCAAAAGACCCTACAAAGATATCAAAACAACCACCCTAAAATGAAACTAACGA
* * * *
90695588 ATTATATCTGAAGATTTTGAAAACACCAACGCATTCTAAATGGTGGCACAAATGAAGATAGGTTG
131 ATTATATCTGAAGATTTTGAAAACACCAACACAATCTAAATGGCGACACAAATGAAGATAGGTTG
* * * * * *
90695653 GCAACGAAGAAATAATAGCAAGAGATAACAACAAGGGAAAATGGTAACAAATTTAAAAGAAACAA
196 GCAACGAAGAAACAATAGCAAGAAACAACAACAAGGGAAAATGGCAAAAAATGTAAAAGAAACAA
* *
90695718 AATAAAAATGAAATAGAAAGAAAGAAGAAGAAAAAAATAACGTCAAAGGAACAGAAAATTGGAAA
261 AATAAAAATGAAACAGAAAGAAAGAAGAAGAAAAAAATAACGTCAAAGGAACACAAAATTGGAAA
* *
90695783 AAAGAAATGGAAGTAGTGGAAAGAGAGGAATACAAAAAAATTTGGG
326 AAAGAAATGAAAGTAATGGAAAGAGAGGAATACAAAAAAATTTGGG
* * *
90695829 GAAATTGTTAAAATCCTTACTTGCTAGAAGAGTAAACGCCTTATGAACCACCC-TAGCAAAATCA
1 GAAATTGCTAAAATCCTTACTTGCTAGAAGAGTAAACGCCTCAAGAACCACCCTTAGCAAAATCA
* * *
90695893 CAACTAATGAAACCAAAAGACCTTTCAAAGATATCAAGACAACCACCCTAAAATGAAACTAACGA
66 CAACTAATGAAACCAAAAGACCCTACAAAGATATCAAAACAACCACCCTAAAATGAAACTAACGA
90695958 ATTATACTTACCTGAAGATTTT-AATAACACCAACACAATCTAAATGGCGACACAACA-GAAGAT
131 ATTATA--T--CTGAAGATTTTGAA-AACACCAACACAATCTAAATGGCGACACAA-ATGAAGAT
* * * * * *
90696021 AGGTTTGCAATGAAGAAACAATAGCAAGAAACGACAACAGGGGAATATGGCAAAAAATGTAAAAT
190 AGGTTGGCAACGAAGAAACAATAGCAAGAAACAACAACAAGGGAAAATGGCAAAAAATGTAAAAG
* * * *
90696086 AAACGAAA-GAAAATGAAACAGAAAGAAAGAAGAAGAAAAAAATAACGTTAGAGGAACACAAAAT
255 AAACAAAATAAAAATGAAACAGAAAGAAAGAAGAAGAAAAAAATAACGTCAAAGGAACACAAAAT
* * *
90696150 TGG-AAAAAGACATTAAAGTAATGGAAAGA-AGG-A-ACGTAAAAAATTTGGG
320 TGGAAAAAAGAAATGAAAGTAATGGAAAGAGAGGAATAC-AAAAAAATTTGGG
* * ** * *
90696199 GAAATTGCTGAAATCCTCACTCACTAGAAGAGGAAAAGCCTCAAGAACCACCC
1 GAAATTGCTAAAATCCTTACTTGCTAGAAGAGTAAACGCCTCAAGAACCACCC
90696252 CTAGTAAACG
Statistics
Matches: 369, Mismatches: 46, Indels: 16
0.86 0.11 0.04
Matches are distributed among these distances:
369 2 0.01
370 160 0.43
371 24 0.07
372 23 0.06
373 56 0.15
374 103 0.28
375 1 0.00
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.17
Consensus pattern (371 bp):
GAAATTGCTAAAATCCTTACTTGCTAGAAGAGTAAACGCCTCAAGAACCACCCTTAGCAAAATCA
CAACTAATGAAACCAAAAGACCCTACAAAGATATCAAAACAACCACCCTAAAATGAAACTAACGA
ATTATATCTGAAGATTTTGAAAACACCAACACAATCTAAATGGCGACACAAATGAAGATAGGTTG
GCAACGAAGAAACAATAGCAAGAAACAACAACAAGGGAAAATGGCAAAAAATGTAAAAGAAACAA
AATAAAAATGAAACAGAAAGAAAGAAGAAGAAAAAAATAACGTCAAAGGAACACAAAATTGGAAA
AAAGAAATGAAAGTAATGGAAAGAGAGGAATACAAAAAAATTTGGG
Found at i:90696442 original size:15 final size:15
Alignment explanation
Indices: 90696431--90696463 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
90696421 CAACAAATGT
90696431 AAAA-GAAACAAAAG
1 AAAATGAAACAAAAG
90696445 AAAATGAAACAGAAAG
1 AAAATGAAACA-AAAG
90696461 AAA
1 AAA
90696464 GAAGAAGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 6 0.35
16 7 0.41
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (15 bp):
AAAATGAAACAAAAG
Found at i:90696832 original size:25 final size:25
Alignment explanation
Indices: 90696804--90696852 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
90696794 AACAAATGTA
*
90696804 AAAGAAACAAAAGAA-AATAAAATAG
1 AAAGAAA-AAAAGAAGAAAAAAATAG
*
90696829 AAAGAAATAAAGAAGAAAAAAATA
1 AAAGAAAAAAAGAAGAAAAAAATA
90696853 ATGTTAGAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.78, C:0.02, G:0.12, T:0.08
Consensus pattern (25 bp):
AAAGAAAAAAAGAAGAAAAAAATAG
Found at i:90697049 original size:372 final size:369
Alignment explanation
Indices: 90696355--90698436 Score: 2665
Period size: 372 Copynumber: 5.6 Consensus size: 369
90696345 AACTAAATTA
* * * * * * * * *
90696355 CAGCATAATAGAAGATAGGTTAGCAATGAAAAAACTATAGAAAAAGACGAAAACAGAGGAATATG
1 CAGCACAACAGAAGATAGGTCAACAATGAAGAAACAATAGCAAGAGACGACAACAG-GGAATATG
* *
90696420 GCAACAAATGTAAAAGAAACAAAAGAAAATGAAACAGAAAGAAAGAAGAAGAAGAAAATAATGTT
65 GCAACAAATGTAAAAGAAACAAAAGAAAATGAAACAGAAAGAAAGAAGAAGAAAAAAATAACGTT
* *
90696485 AAAAGAACAAAAAATGGGAAAAAGAAATAGAAGTAGTGGAAAGAGAGGAACATAAAAAATTTGCG
130 AGAGGAACAAAAAATGGGAAAAAGAAATAGAAGTAGTGGAAAGAGAGGAACATAAAAAATTTG-G
* * *
90696550 GAAGTTGCTAAAATTCTCACTCGCCAGAAGAGTAAACACATCAGGAACCACCCCTAGCAAAATCA
194 GAAATTGCTAAAATTCTCACTCGCCAGAAGAGTAAACACCTCACGAACCA-CCCTAGCAAAATCA
*
90696615 CAACTAATGAAACCAAAAGACCTTCCAAAGATATCAAGACAACCACTCTAAAATGAAACTAACGA
258 CAACTAATGAAACCAAAAGACCTTCCAAAGATATCAAGACAACCACCCTAAAATGAAACTAACGA
* * **
90696680 ATTATACTTACCTAAAGATTTTAATAACACCGACATAGTCTAAATGG
323 ATTATACTTACCTGAAGATTTTAATAACACCAACGCAGTCTAAATGG
** *
90696727 CAGCACAACAGAAGATAGGTCGGCAATGAAGAAACAATAACAAGA-ACCGACAACAGGAGAATAT
1 CAGCACAACAGAAGATAGGTCAACAATGAAGAAACAATAGCAAGAGA-CGACAACAGG-GAATAT
* * * * * *
90696791 AGTAACAAATGTAAAAGAAACAAAAGAAAATAAAATAGAAAGAAATAAAGAAGAAAAAAATAATG
64 GGCAACAAATGTAAAAGAAACAAAAGAAAATGAAACAGAAAGAAA-GAAGAAGAAAAAAATAACG
* * * * *
90696856 TTAGAGGAATAGAAAATGGGAAAAAGAAATGGAAGTAGTGGTAAGAGAGAAACATAAAAAATTTG
128 TTAGAGGAACAAAAAATGGGAAAAAGAAATAGAAGTAGTGGAAAGAGAGGAACATAAAAAATTTG
* * *
90696921 GTGAAATTGCTAAAATCCTTACTCGCCAGAAGAGTAAACACTTCACGAACCACCCTAGCAAAATC
193 G-GAAATTGCTAAAATTCTCACTCGCCAGAAGAGTAAACACCTCACGAACCACCCTAGCAAAATC
* * * * *
90696986 ACAGCTAATGAAACTAAACGACCTTACAAAGATATCAAGACAACCACCCTAAAACGAAACTAACG
257 ACAACTAATGAAACCAAAAGACCTTCCAAAGATATCAAGACAACCACCCTAAAATGAAACTAACG
* * * *
90697051 AATTATACTTACCTAAAGATTTTAATAACACCAATGTAGGCTAAATGG
322 AATTATACTTACCTGAAGATTTTAATAACACCAACGCAGTCTAAATGG
* *
90697099 CCA-CACAACAGAAGATAGGTC-ACAATGAAAAAATAATAGCAAGAGACGACAACAGGGGAATAT
1 -CAGCACAACAGAAGATAGGTCAACAATGAAGAAACAATAGCAAGAGACGACAACA-GGGAATAT
* * ** *
90697162 AGCAAAAAATGTAAAAGAAATGAAAGAAAAATGAAACAAAAAGAAAGAAGAAGAAGAAGAAAATA
64 GGCAACAAATGTAAAAGAAACAAAAG-AAAATGAAACAGAAAGAAAGAAGAAG-A-AA-AAAATA
* *
90697227 ACGTTAGAGGAACAAAAAATGGGAAAAAAGAAATGGAAGTAGTGGAAAGAGAAGAACATAAAAAA
125 ACGTTAGAGGAACAAAAAATGGG-AAAAAGAAATAGAAGTAGTGGAAAGAGAGGAACATAAAAAA
* * * * * * *
90697292 TTTAGGGAAATTGCTAATATCCTTACTC-ACTGAAGAGTAAACGCCTCACGAACGACCTCTAGCA
189 TTT-GGGAAATTGCTAAAATTCTCACTCGCCAGAAGAGTAAACACCTCACGAACCACC-CTAGCA
* * * *
90697356 AAATCACAACTAATGAAACCAAAATACTTTCTAAAGATATCAAGACAACCAACCTAAAA-GAAAA
252 AAATCACAACTAATGAAACCAAAAGACCTTCCAAAGATATCAAGACAACCACCCTAAAATG-AAA
* * *
90697420 CTAACTAATTATACTTACTTGAAGATTTTAATAACACCAACGCAGTTTAAATGG
316 CTAACGAATTATACTTACCTGAAGATTTTAATAACACCAACGCAGTCTAAATGG
* * * * *
90697474 CGGTACAACAGAAGATAGGTCGACAATGAAGAAACAGTAGCAAGAGATGACAACAGGGGAATATG
1 CAGCACAACAGAAGATAGGTCAACAATGAAGAAACAATAGCAAGAGACGACAACA-GGGAATATG
* * * *
90697539 GCAACAAATGTAAAAGAAACAAAAGAAAATGAAATAGAAAGAAAGAAGAAGAAGAAAATAGCGTC
65 GCAACAAATGTAAAAGAAACAAAAGAAAATGAAACAGAAAGAAAGAAGAAGAAAAAAATAACGTT
* *
90697604 AGAGGAACAAAAAATGGGAAAAAGAAATAAAAGTAGTGGAAAGAGAGGAACATAAAAAATTAGGG
130 AGAGGAACAAAAAATGGGAAAAAGAAATAGAAGTAGTGGAAAGAGAGGAACATAAAAAATT-TGG
* * *
90697669 GAAA-TGACTAAAATTCTCACTCACCAGAAGAGTAAAC-CTCTCACGTACCATCCTAGC--AA--
194 GAAATTG-CTAAAATTCTCACTCGCCAGAAGAGTAAACAC-CTCACGAACCACCCTAGCAAAATC
* *
90697728 A-AACTAATGAAACCAAAAGACCTTCCAAAAATATCAAGACAACCACCCTAAAATGAAACTAACT
257 ACAACTAATGAAACCAAAAGACCTTCCAAAGATATCAAGACAACCACCCTAAAATGAAACTAACG
* * *
90697792 AATTATACTTATCTGAAGATTTTAATAAGAACAACGCAGTCTAAATGG
322 AATTATACTTACCTGAAGATTTTAATAACACCAACGCAGTCTAAATGG
* * * *
90697840 CAGCACAACATAAGATAGGTTAACAATGAAGAAACAATAACAAGAGACGATAACAAGGGAATATG
1 CAGCACAACAGAAGATAGGTCAACAATGAAGAAACAATAGCAAGAGACGACAAC-AGGGAATATG
* * *
90697905 GCAATAAATGTAAAAGAAACGAAAGAAAAATGAAACAGAAAGAAAGAAGTAG-AAAAAATAACGT
65 GCAACAAATGTAAAAGAAACAAAAG-AAAATGAAACAGAAAGAAAGAAGAAGAAAAAAATAACGT
* *
90697969 TAGAGGAACAAAAAATGGGAAAAAGAAATAGAAGTAGTGAAAAAAGAGGAACATAAAAAATTTGG
129 TAGAGGAACAAAAAATGGGAAAAAGAAATAGAAGTAGTGGAAAGAGAGGAACATAAAAAATTT-G
* * ** * *
90698034 GGAAATTGCTAAAATTCTCACTCGCTAGGAGAGTAAATGCCTCACAAACCACCCTTAGCAAAATT
193 GGAAATTGCTAAAATTCTCACTCGCCAGAAGAGTAAACACCTCACGAACCACCC-TAGCAAAATC
* *
90698099 ACAACTAATGAAACCAAAATAGCTTCCAAAGATATCAAGACAACCACCCTAAAATG--A--AACG
257 ACAACTAATGAAACCAAAAGACCTTCCAAAGATATCAAGACAACCACCCTAAAATGAAACTAACG
* ** *
90698160 AATTATTCTTACCTGAAGATTTTAATAACACCAATACAGTTTAAATGG
322 AATTATACTTACCTGAAGATTTTAATAACACCAACGCAGTCTAAATGG
* * *
90698208 CAGCATAACAGAAGATAGGTCAACAAT-AACAAA-ATAGTAGTAAGAGACGAC-ACAAGGGAATA
1 CAGCACAACAGAAGATAGGTCAACAATGAAGAAACA-A-TAGCAAGAGACGACAAC-AGGGAATA
* *
90698270 TGGCAACAAATGTAAAAGAAAGAAAAGAAAATGAAATAGAAAGAAAGAAGAAGAAGAAAAATAAC
63 TGGCAACAAATGTAAAAGAAACAAAAGAAAATGAAACAGAAAGAAAGAAGAAGAA-AAAAATAAC
* * * * *
90698335 ATTAGAGGAACAGAAAATGGAAAAAAGAAATGGAAATAGTGGAAAGAGAGGAACATAAAAAATTT
127 GTTAGAGGAACAAAAAATGGGAAAAAGAAATAGAAGTAGTGGAAAGAGAGGAACATAAAAAATTT
*
90698400 AGGGAAATTGCTAAAATTTTCACTCGCCAGAAGAGTA
192 -GGGAAATTGCTAAAATTCTCACTCGCCAGAAGAGTA
90698437 TGTAACACCC
Statistics
Matches: 1498, Mismatches: 175, Indels: 78
0.86 0.10 0.04
Matches are distributed among these distances:
366 312 0.21
367 76 0.05
368 179 0.12
369 4 0.00
370 3 0.00
371 128 0.09
372 346 0.23
373 125 0.08
374 53 0.04
375 210 0.14
376 62 0.04
ACGTcount: A:0.52, C:0.14, G:0.18, T:0.17
Consensus pattern (369 bp):
CAGCACAACAGAAGATAGGTCAACAATGAAGAAACAATAGCAAGAGACGACAACAGGGAATATGG
CAACAAATGTAAAAGAAACAAAAGAAAATGAAACAGAAAGAAAGAAGAAGAAAAAAATAACGTTA
GAGGAACAAAAAATGGGAAAAAGAAATAGAAGTAGTGGAAAGAGAGGAACATAAAAAATTTGGGA
AATTGCTAAAATTCTCACTCGCCAGAAGAGTAAACACCTCACGAACCACCCTAGCAAAATCACAA
CTAATGAAACCAAAAGACCTTCCAAAGATATCAAGACAACCACCCTAAAATGAAACTAACGAATT
ATACTTACCTGAAGATTTTAATAACACCAACGCAGTCTAAATGG
Found at i:90697207 original size:21 final size:22
Alignment explanation
Indices: 90697166--90697210 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
90697156 GAATATAGCA
*
90697166 AAAAATGTAAAAGAAATGAAAG
1 AAAAATGTAAAAGAAAAGAAAG
90697188 AAAAATG-AAACA-AAAAGAAAG
1 AAAAATGTAAA-AGAAAAGAAAG
90697209 AA
1 AA
90697211 GAAGAAGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.73, C:0.02, G:0.16, T:0.09
Consensus pattern (22 bp):
AAAAATGTAAAAGAAAAGAAAG
Found at i:90697947 original size:17 final size:15
Alignment explanation
Indices: 90697916--90697949 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
90697906 CAATAAATGT
90697916 AAAAGAAACGAAAGA
1 AAAAGAAACGAAAGA
90697931 AAAATGAAACAGAAAGA
1 AAAA-GAAAC-GAAAGA
90697948 AA
1 AA
90697950 GAAGTAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 5 0.29
17 8 0.47
ACGTcount: A:0.74, C:0.06, G:0.18, T:0.03
Consensus pattern (15 bp):
AAAAGAAACGAAAGA
Found at i:90697952 original size:21 final size:22
Alignment explanation
Indices: 90697910--90697952 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
90697900 ATATGGCAAT
90697910 AAATGTAAAAGAAACGAAAGAA
1 AAATGTAAAAGAAACGAAAGAA
90697932 AAATG-AAACAGAAA-GAAAGAA
1 AAATGTAAA-AGAAACGAAAGAA
90697953 GTAGAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.70, C:0.05, G:0.19, T:0.07
Consensus pattern (22 bp):
AAATGTAAAAGAAACGAAAGAA
Found at i:90698331 original size:25 final size:24
Alignment explanation
Indices: 90698284--90698332 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
90698274 AACAAATGTA
90698284 AAAGAAAGAAAAGAAAATGAAATAG
1 AAAGAAAGAAAAGAAAA-GAAATAG
90698309 AAAGAAAGAAGAAGAAGAA-AAATA
1 AAAGAAAGAA-AAGAA-AAGAAATA
90698333 ACATTAGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 15 0.68
26 5 0.23
27 2 0.09
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.06
Consensus pattern (24 bp):
AAAGAAAGAAAAGAAAAGAAATAG
Found at i:90700037 original size:60 final size:64
Alignment explanation
Indices: 90699969--90700086 Score: 190
Period size: 60 Copynumber: 1.9 Consensus size: 64
90699959 CATAACCATT
90699969 CATTTAGTTAGGAACATTTGATTCATTTC-AT-A-A-CATCCTAATTATTTGACATAAACATCA
1 CATTTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAACATCA
* *
90700029 CATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAA
1 CATTTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAA
90700087 GCATGGATAC
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
60 28 0.54
61 2 0.04
62 1 0.02
63 1 0.02
64 20 0.38
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (64 bp):
CATTTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAACATCA
Found at i:90700290 original size:47 final size:47
Alignment explanation
Indices: 90700236--90700383 Score: 116
Period size: 47 Copynumber: 3.3 Consensus size: 47
90700226 TCAAGCGGGG
90700236 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
1 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
* * * * * * *
90700283 AGTAGATCCAAG--ATA----ATTTGGC-ATCTC-TGTATCAGGCG-GGG
1 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-TTA--CGTTGA
*
90700324 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTGTACGTTGA
1 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
* *
90700371 AGCAAATCCAAGA
1 AGCAGATCGAAGA
90700384 TGATTTGGCG
Statistics
Matches: 72, Mismatches: 17, Indels: 24
0.64 0.15 0.21
Matches are distributed among these distances:
39 3 0.04
40 5 0.07
41 18 0.25
42 2 0.03
43 3 0.04
45 3 0.04
46 2 0.03
47 29 0.40
48 4 0.06
49 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (47 bp):
AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
Found at i:90700349 original size:88 final size:88
Alignment explanation
Indices: 90700200--90700423 Score: 351
Period size: 88 Copynumber: 2.6 Consensus size: 88
90700190 AGCTGAAGAT
* *
90700200 ATCCAAGATGATTTGGCATTTCTGTATCAAGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
* * *
90700265 TTCACGTGTTTACGTTGAAGTAG
66 TTCACGTGTGTACGTTGAAGCAA
*
90700288 ATCCAAGATAATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
90700353 TTCACGTGTGTACGTTGAAGCAA
66 TTCACGTGTGTACGTTGAAGCAA
* * * *
90700376 ATCCAAGATGATTTGGCGTCTCTGTAGC-GGCAGAGAGCAGATCGAAGA
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGA
90700424 TAACAGATTT
Statistics
Matches: 125, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 18 0.14
88 107 0.86
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (88 bp):
ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
TTCACGTGTGTACGTTGAAGCAA
Found at i:90700439 original size:44 final size:44
Alignment explanation
Indices: 90700385--90700995 Score: 986
Period size: 44 Copynumber: 14.1 Consensus size: 44
90700375 AATCCAAGAT
*
90700385 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
90700429 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGGTCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
90700473 GATTTAGAGTCTTTGTAGCGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
90700517 GATTTGGCATCTCTATAGCGGCGAAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
90700557 GATTTAGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
90700601 GATTTGGCATCTCTGTAGCGGCGAAGAGCAAATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
90700645 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
90700689 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
90700733 GATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
90700777 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
90700821 GATTTGGCGTCTCTGTAGCTGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
90700861 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
90700905 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
90700949 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
90700993 GAT
1 GAT
90700996 AGCGGCGGAG
Statistics
Matches: 525, Mismatches: 34, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
40 76 0.14
44 449 0.86
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:90700768 original size:260 final size:258
Alignment explanation
Indices: 90700385--90701212 Score: 1229
Period size: 260 Copynumber: 3.2 Consensus size: 258
90700375 AATCCAAGAT
* *
90700385 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
90700450 CGGAGAGCAGGTCAAAGATAACAGATTTAGAGTCTTTGTAGCGGCGGAGAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTT-G-GTC-TTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * * * * *
90700515 TAGATTTGGCATCTCTATAGCGGCGAAGAGCAGATCGAAGAT-GATTTAGCATCTCTGTAGCGGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGC
* * * *
90700579 GGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGAAGAGCAAATCGAAGATAAT
193 GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAAC
90700644 A
258 A
90700645 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
*
90700710 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTT-G-GTCT-TGTAGCGGCGGAGAGCAGATCGAAGATAA
90700775 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
128 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGC
*
90700840 TGCGGAGAGCAGATCGAAGAT----GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
190 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
90700901 AACA
255 AACA
90700905 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
90700970 CGGAGAGCAGATCGAAGATAACAGA----------TAGCGGCGGAGAGCAGATCGAA-ATAACAG
66 CGGAGAGCAGATCGAAGATAACAGATTTGGTCTTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
* *
90701024 ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGT
131 ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGGC
* * *
90701089 AGAGAGCAGATCGAAGATAACAGATTTGGCGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATAAC
193 GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAAC
90701154 A
258 A
* *
90701155 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACGGATTTGGCGTCTCT
1 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCT
90701213 ATATTAGACG
Statistics
Matches: 532, Mismatches: 27, Indels: 28
0.91 0.05 0.05
Matches are distributed among these distances:
246 86 0.16
247 21 0.04
250 98 0.18
259 1 0.00
260 289 0.54
264 37 0.07
ACGTcount: A:0.29, C:0.17, G:0.33, T:0.21
Consensus pattern (258 bp):
GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
CGGAGAGCAGATCGAAGATAACAGATTTGGTCTTGTAGCGGCGGAGAGCAGATCGAAGATAACAG
ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGGA
GAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:90701023 original size:30 final size:31
Alignment explanation
Indices: 90700964--90701025 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
90700954 GGCGTCTCTG
90700964 TAGCGGCGGAGAGCAGATCGAAGATAACAGA
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGA
90700995 TAGCGGCGGAGAGCAGATCGAA-ATAACAGA
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGA
90701025 T
1 T
90701026 TTGGCGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 9 0.29
31 22 0.71
ACGTcount: A:0.39, C:0.16, G:0.34, T:0.11
Consensus pattern (31 bp):
TAGCGGCGGAGAGCAGATCGAAGATAACAGA
Found at i:90701034 original size:74 final size:75
Alignment explanation
Indices: 90700919--90701069 Score: 295
Period size: 74 Copynumber: 2.0 Consensus size: 75
90700909 TGGCGTCTCT
90700919 ATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 ATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
90700984 AAGATAACAG
66 AAGATAACAG
90700994 ATAGCGGCGGAGAGCAGATCGAA-ATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 ATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
90701058 AAGATAACAG
66 AAGATAACAG
90701068 AT
1 AT
90701070 TTGGCGTCTC
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 53 0.70
75 23 0.30
ACGTcount: A:0.32, C:0.17, G:0.34, T:0.17
Consensus pattern (75 bp):
ATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
AAGATAACAG
Found at i:90701069 original size:88 final size:88
Alignment explanation
Indices: 90700995--90701245 Score: 371
Period size: 88 Copynumber: 2.9 Consensus size: 88
90700985 AGATAACAGA
*
90700995 TAGCGGCGGAGAGCAGATCGAA-ATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGA
*
90701059 AGATAACAGATTTGGCGTCTCCG
66 AGATAACAGATTTGGCGTCTCAG
** *
90701082 TAGCGGTAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTTTGTAGCAGCGGAGAGCAGATCGA
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGA
*
90701147 AGATAACAGATTTGGCGTCTCTG
66 AGATAACAGATTTGGCGTCTCAG
* * ** *
90701170 TAGCGGCGGAGAGCAGATCGAAGATAACGGATTTGGCGTCTCTATATTAGACGG-GAGCAGATCA
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCAG-CGGAGAGCAGATCG
*
90701234 AAGATAGCAGAT
65 AAGATAACAGAT
90701246 ATCACTTTTC
Statistics
Matches: 148, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
87 20 0.14
88 125 0.84
89 3 0.02
ACGTcount: A:0.30, C:0.17, G:0.32, T:0.21
Consensus pattern (88 bp):
TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGA
AGATAACAGATTTGGCGTCTCAG
Found at i:90701085 original size:44 final size:44
Alignment explanation
Indices: 90700995--90701212 Score: 375
Period size: 44 Copynumber: 5.0 Consensus size: 44
90700985 AGATAACAGA
90700995 TAGCGGCGGAGAGCAGATCGAA-ATAACAGATTTGGCGTCTCTG
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTG
*
90701038 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCG
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTG
** *
90701082 TAGCGGTAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTTTG
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTG
*
90701126 TAGCAGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTG
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTG
*
90701170 TAGCGGCGGAGAGCAGATCGAAGATAACGGATTTGGCGTCTCT
1 TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCT
90701213 ATATTAGACG
Statistics
Matches: 163, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
43 22 0.13
44 141 0.87
ACGTcount: A:0.28, C:0.18, G:0.33, T:0.21
Consensus pattern (44 bp):
TAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTG
Found at i:90701228 original size:44 final size:44
Alignment explanation
Indices: 90701001--90701245 Score: 297
Period size: 44 Copynumber: 5.6 Consensus size: 44
90700991 CAGATAGCGG
*
90701001 CGGAGAGCAGATCGAA-ATAACAGATTTGGCGTCTCTGTAGC-GG
1 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA-CAGA
* *
90701044 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGGTA
1 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA-CAG-A
*
90701090 --GAGAGCAGATCGAAGATAACAGATTTGGCGTCTTTGTAGCAG-
1 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA-CAGA
*
90701132 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC-GG
1 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA-CAGA
* * *
90701176 CGGAGAGCAGATCGAAGATAACGGATTTGGCGTCTCTATATTAGA
1 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA-CAGA
* *
90701221 CGG-GAGCAGATCAAAGATAGCAGAT
1 CGGAGAGCAGATCGAAGATAACAGAT
90701246 ATCACTTTTC
Statistics
Matches: 181, Mismatches: 14, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
43 17 0.09
44 159 0.88
45 5 0.03
ACGTcount: A:0.30, C:0.17, G:0.32, T:0.21
Consensus pattern (44 bp):
CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTACAGA
Found at i:90701275 original size:132 final size:132
Alignment explanation
Indices: 90700385--90701250 Score: 880
Period size: 132 Copynumber: 6.7 Consensus size: 132
90700375 AATCCAAGAT
* ** *
90700385 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCAG
** * * * *
90700450 CGGAGAGCAGGTCAAAGATAACAGAT-TTAGAGTCTTTGTAGCGGCGGAGAGCAGATCGAAGATA
66 TAGAGAGCAGATCAAAGATAACAGATATCA-CGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATA
*
90700514 ATA
130 ACA
* * * * * ** *
90700517 GATTTGGCATCTCTATAGCGGCGAAGAGCAGATCGAAGAT----GATTTAGCATCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCAG
** * * ** * * * * *
90700578 CGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGAAGAGCAAATCGAAGATAA
66 TAGAGAGCAGATCAAAGATAACAGATATCACGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATAA
*
90700643 TA
131 CA
* ** *
90700645 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCAG
** * * ** * * *
90700710 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAA
66 TAGAGAGCAGATCAAAGATAACAGATATCACGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATAA
90700775 CA
131 CA
** *
90700777 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCTG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCAG
** * * ** * *
90700842 CGGAGAGCAGATCGAAGAT----GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
66 TAGAGAGCAGATCAAAGATAACAGATATCACGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATAA
90700903 CA
131 CA
* ** *
90700905 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCAG
** *
90700970 CGGAGAGCAGATCGAAGATAACAG--AT-A-G-C------G--GCGGAGAGCAGATCGAA-ATAA
66 TAGAGAGCAGATCAAAGATAACAGATATCACGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATAA
90701021 CA
131 CA
* *
90701023 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCAG
* * **
90701088 TAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATAA
66 TAGAGAGCAGATCAAAGATAACAGATATCACGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATAA
90701153 CA
131 CA
* * **
90701155 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACGGATTTGGCGTCTCTATATTAG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCAG
* *
90701220 -ACGGGAGCAGATCAAAGATAGCAGATATCAC
66 TA-GAGAGCAGATCAAAGATAACAGATATCAC
90701251 TTTTCTGAGT
Statistics
Matches: 661, Mismatches: 49, Indels: 48
0.87 0.06 0.06
Matches are distributed among these distances:
118 91 0.14
119 17 0.03
120 1 0.00
121 1 0.00
122 1 0.00
123 1 0.00
127 1 0.00
128 239 0.36
129 2 0.00
130 1 0.00
131 18 0.03
132 288 0.44
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.21
Consensus pattern (132 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCAG
TAGAGAGCAGATCAAAGATAACAGATATCACGTCTTTGTAGCAGCGGAGAGCAGATCGAAGATAA
CA
Found at i:90707582 original size:46 final size:47
Alignment explanation
Indices: 90707417--90707680 Score: 229
Period size: 46 Copynumber: 5.6 Consensus size: 47
90707407 GGGTATAATA
*
90707417 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCTG-TG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATAT-TGAGG
* * *
90707467 CCGATGCATGTCCCAGACATGTCTTACACTAG--C-ACATCTCGTA-G
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATATTG-AGG
* * * * * *
90707511 TCGATGCGTGTCCCAAATATATCTTACACTGGCT-TACATTTTGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATATTGAGG
* * * ** *
90707557 CCGATGCATGTTCCAGACATGTCTTACACTAGCTCT-CGTATCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATATTGAGG
* * *
90707603 CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCT-CATAATGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATATTGAGG
*
90707651 CCGATGAATGTCCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
90707681 AGCGTACACA
Statistics
Matches: 171, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 32 0.19
45 1 0.01
46 56 0.33
47 25 0.15
48 36 0.21
49 14 0.08
50 6 0.04
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATATTGAGG
Found at i:90707667 original size:94 final size:94
Alignment explanation
Indices: 90707409--90707683 Score: 323
Period size: 94 Copynumber: 2.9 Consensus size: 94
90707399 GAAACATAGG
* * * *
90707409 GTATAATACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCTGTGCCGATGC
1 GTATAATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATA-ATGTG-GCCGATGC
90707474 ATGTCCCAGACATGTCTTACACTAGCACATCTC
64 ATGTCCCAGACATGTCTTACACTAG--CATCTC
* * * * ** *
90707507 G--T-A-GTCGATG-CGTGTCCCAAATAT-ATCTTACACTGGCT-TACATTTTGAGGCCGATGCA
1 GTATAATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCT-CATAATGTGGCCGATGCA
*
90707565 TGTTCCAGACATGTCTTACACTAGC-TCTC
65 TGTCCCAGACATGTCTTACACTAGCATCTC
*
90707594 GTATCAATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAATGTGGCCGATGAA
1 GTAT-AATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCA
90707659 TGTCCCAGACATGTCTTACACTAGC
65 TGTCCCAGACATGTCTTACACTAGC
90707684 GTACACATAT
Statistics
Matches: 147, Mismatches: 21, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
87 5 0.03
88 1 0.01
89 1 0.01
90 32 0.22
91 4 0.03
92 21 0.14
93 23 0.16
94 56 0.38
95 2 0.01
96 1 0.01
98 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
GTATAATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCAT
GTCCCAGACATGTCTTACACTAGCATCTC
Found at i:90711097 original size:14 final size:14
Alignment explanation
Indices: 90711078--90711107 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
90711068 AGAAGGAAAG
90711078 AAGAAAAGAAAGAA
1 AAGAAAAGAAAGAA
*
90711092 AAGAAAAGTAAGAA
1 AAGAAAAGAAAGAA
90711106 AA
1 AA
90711108 ACAGAAACGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (14 bp):
AAGAAAAGAAAGAA
Found at i:90711122 original size:18 final size:19
Alignment explanation
Indices: 90711082--90711123 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
90711072 GGAAAGAAGA
90711082 AAAGAAAGAAAAGAAAAGT
1 AAAGAAAGAAAAGAAAAGT
* *
90711101 -AAGAAA-AACAGAAACGT
1 AAAGAAAGAAAAGAAAAGT
90711118 AAAGAA
1 AAAGAA
90711124 GAGTTTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.71, C:0.05, G:0.19, T:0.05
Consensus pattern (19 bp):
AAAGAAAGAAAAGAAAAGT
Found at i:90711737 original size:18 final size:18
Alignment explanation
Indices: 90711711--90711750 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
90711701 GTGAAATATT
* *
90711711 AAGTGAAGTGTTTTATGA
1 AAGTAAAGTGTTATATGA
90711729 AAGTAAAGTGTTATATGA
1 AAGTAAAGTGTTATATGA
90711747 AAGT
1 AAGT
90711751 GAATTCATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.25, T:0.35
Consensus pattern (18 bp):
AAGTAAAGTGTTATATGA
Found at i:90713162 original size:6 final size:6
Alignment explanation
Indices: 90713148--90713181 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
90713138 TGATGACATA
*
90713148 ATAAAC ATAATC ATAAAC ATAAAC ATAAAC ATAA
1 ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAA
90713182 GTTCATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.65, C:0.15, G:0.00, T:0.21
Consensus pattern (6 bp):
ATAAAC
Found at i:90714206 original size:15 final size:16
Alignment explanation
Indices: 90714186--90714217 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
90714176 AAATTGACCC
90714186 AAAAA-TCACAATTTT
1 AAAAATTCACAATTTT
90714201 AAAAATTCACAATTTT
1 AAAAATTCACAATTTT
90714217 A
1 A
90714218 CCCCTAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAAATTCACAATTTT
Found at i:90717221 original size:11 final size:11
Alignment explanation
Indices: 90717200--90717234 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
90717190 AATGGCCTCA
90717200 CAGGCCCGTGTG
1 CAGG-CCGTGTG
90717212 CAGGCCGTGTG
1 CAGGCCGTGTG
90717223 CTAGGCCGTGTG
1 C-AGGCCGTGTG
90717235 AAAATTGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.09, C:0.29, G:0.43, T:0.20
Consensus pattern (11 bp):
CAGGCCGTGTG
Found at i:90718906 original size:94 final size:94
Alignment explanation
Indices: 90718775--90718946 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 94
90718765 CCACAATATA
* * * ** *
90718775 AGAGCTAGTGTAAGACATGTCTGGGACATGCTACAGCCTTGAGATATTTAAGCCAGTGTTAGACA
1 AGAGCTAGTGTAAGACATGTCTGGAACAGGCTACAGCCTCGAGATATACAAGCCAGTGTAAGACA
90718840 TGTCTAGGACATGCATCGGCGTTGAGAAG
66 TGTCTAGGACATGCATCGGCGTTGAGAAG
* * *
90718869 AGAGCTAGTGTAAGACATGTTTGGAACAGGC-ATCAGCCTCGCGATATACAAGCTAGTGTAAGAC
1 AGAGCTAGTGTAAGACATGTCTGGAACAGGCTA-CAGCCTCGAGATATACAAGCCAGTGTAAGAC
* *
90718933 CTGTCTGGGACATG
65 ATGTCTAGGACATG
90718947 GCGTCAGCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
93 1 0.02
94 65 0.98
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (94 bp):
AGAGCTAGTGTAAGACATGTCTGGAACAGGCTACAGCCTCGAGATATACAAGCCAGTGTAAGACA
TGTCTAGGACATGCATCGGCGTTGAGAAG
Found at i:90720277 original size:20 final size:21
Alignment explanation
Indices: 90720236--90720277 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
90720226 CATGTACAAG
90720236 TTCCACACGGGCGTGTTGCCC
1 TTCCACACGGGCGTGTTGCCC
*
90720257 TTCCACACGGGTGTG-TGCCC
1 TTCCACACGGGCGTGTTGCCC
90720277 T
1 T
90720278 GTTTTAAGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.10, C:0.36, G:0.29, T:0.26
Consensus pattern (21 bp):
TTCCACACGGGCGTGTTGCCC
Found at i:90728488 original size:19 final size:19
Alignment explanation
Indices: 90728460--90728498 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
90728450 TTTATAGTTT
90728460 TAAATCATTTTTGGGTAAAA
1 TAAATCA-TTTTGGGTAAAA
*
90728480 TAAAT-ATTTTGGGTCAAA
1 TAAATCATTTTGGGTAAAA
90728498 T
1 T
90728499 TAGAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 1 0.06
20 5 0.28
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.41
Consensus pattern (19 bp):
TAAATCATTTTGGGTAAAA
Found at i:90732127 original size:20 final size:22
Alignment explanation
Indices: 90732078--90732127 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 22
90732068 AAAAAATGGT
90732078 TATATTAA-AAAATTAAAATGA
1 TATATTAATAAAATTAAAATGA
**
90732099 T-TAAAAATAAAA-TAAAAT-A
1 TATATTAATAAAATTAAAATGA
90732118 TATATTAATA
1 TATATTAATA
90732128 TATAATTCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 5
0.72 0.12 0.16
Matches are distributed among these distances:
19 2 0.09
20 16 0.70
21 5 0.22
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
TATATTAATAAAATTAAAATGA
Found at i:90742392 original size:28 final size:28
Alignment explanation
Indices: 90742352--90742407 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
90742342 TGAACTGTAA
90742352 GGGTTATACTTGTATATGCCTTTTGGTT
1 GGGTTATACTTGTATATGCCTTTTGGTT
90742380 GGGTTATACTTGTATATGCCTTTTGGTT
1 GGGTTATACTTGTATATGCCTTTTGGTT
90742408 AAGTATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.14, C:0.11, G:0.25, T:0.50
Consensus pattern (28 bp):
GGGTTATACTTGTATATGCCTTTTGGTT
Found at i:90743990 original size:19 final size:20
Alignment explanation
Indices: 90743938--90743989 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
90743928 TTAAAATTTT
*
90743938 AAATATATTTTTTATAAAAA
1 AAATTTATTTTTTATAAAAA
90743958 AAATTTATTTTTTAT-AAAA
1 AAATTTATTTTTTATAAAAA
90743977 AAATTTCATTTTT
1 AAATTT-ATTTTT
90743990 AGTCCTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 10 0.33
20 20 0.67
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
AAATTTATTTTTTATAAAAA
Found at i:90745871 original size:22 final size:22
Alignment explanation
Indices: 90745843--90745889 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
90745833 GTTGTTAAAA
* *
90745843 AATAATAATTATATTTATTT-TT
1 AATAAT-ATTAAAATTATTTATT
90745865 AATAATATTAAAATTATTTATT
1 AATAATATTAAAATTATTTATT
90745887 AAT
1 AAT
90745890 GTTGAATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
AATAATATTAAAATTATTTATT
Found at i:90750661 original size:21 final size:21
Alignment explanation
Indices: 90750635--90750675 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
90750625 AGACGAGCAA
* *
90750635 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
90750656 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
90750676 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:90753210 original size:13 final size:12
Alignment explanation
Indices: 90753194--90753218 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90753184 TTTGTTTACC
90753194 TTTTTTTAGCTA
1 TTTTTTTAGCTA
90753206 TTTTTTTAGCTA
1 TTTTTTTAGCTA
90753218 T
1 T
90753219 AATTAATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (12 bp):
TTTTTTTAGCTA
Found at i:90756431 original size:11 final size:11
Alignment explanation
Indices: 90756415--90756441 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
90756405 AGCCTAAAGT
90756415 TCTTGGAAATC
1 TCTTGGAAATC
90756426 TCTTGGAAATC
1 TCTTGGAAATC
90756437 TCTTG
1 TCTTG
90756442 CTTGGCTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (11 bp):
TCTTGGAAATC
Found at i:90760910 original size:87 final size:87
Alignment explanation
Indices: 90760792--90760957 Score: 323
Period size: 87 Copynumber: 1.9 Consensus size: 87
90760782 ATTAGCAACG
*
90760792 GTATCTAACGATACATTAGGCTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTA
1 GTATCTAACGATACATTAGACTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTA
90760857 GAAATACATTGTTAAATACATT
66 GAAATACATTGTTAAATACATT
90760879 GTATCTAACGATACATTAGACTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTA
1 GTATCTAACGATACATTAGACTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTA
90760944 GAAATACATTGTTA
66 GAAATACATTGTTA
90760958 CCTCACGTAA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 78 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (87 bp):
GTATCTAACGATACATTAGACTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTA
GAAATACATTGTTAAATACATT
Found at i:90761584 original size:16 final size:15
Alignment explanation
Indices: 90761565--90761594 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
90761555 TTGTGACTTT
90761565 GTTAATTTTTATTTTG
1 GTTAATTTTT-TTTTG
90761581 GTTAATTTTTTTTT
1 GTTAATTTTTTTTT
90761595 CAATTTTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (15 bp):
GTTAATTTTTTTTTG
Found at i:90769196 original size:30 final size:33
Alignment explanation
Indices: 90769133--90769204 Score: 96
Period size: 33 Copynumber: 2.3 Consensus size: 33
90769123 CAAAATCTAC
*
90769133 ACGACCGTGTCCCTTAGACTGTGTGCCCATTAA
1 ACGACCGTGCCCCTTAGACTGTGTGCCCATTAA
* *
90769166 ATGACCGTGCCCCTTAGA-T-TGTG-TCATTAA
1 ACGACCGTGCCCCTTAGACTGTGTGCCCATTAA
90769196 ACGACCGTG
1 ACGACCGTG
90769205 TTCGCATCGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 14 0.40
31 4 0.11
32 1 0.03
33 16 0.46
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (33 bp):
ACGACCGTGCCCCTTAGACTGTGTGCCCATTAA
Found at i:90777924 original size:14 final size:14
Alignment explanation
Indices: 90777905--90777938 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
90777895 TGCCATGGCC
90777905 GTGTTGATAAGTCA
1 GTGTTGATAAGTCA
90777919 GTGTTGATAAGTCA
1 GTGTTGATAAGTCA
*
90777933 ATGTTG
1 GTGTTG
90777939 CCCACGGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.29, T:0.38
Consensus pattern (14 bp):
GTGTTGATAAGTCA
Found at i:90779433 original size:6 final size:6
Alignment explanation
Indices: 90779414--90779451 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
90779404 AAAACCAAAG
90779414 AAAT-A AAATCAA AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAAT-AA AAATAA AAATAA AAATAA AAATAA AA
90779452 GAAATAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 4 0.13
6 22 0.71
7 5 0.16
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:90782998 original size:25 final size:25
Alignment explanation
Indices: 90782952--90782999 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
90782942 AATTAGAATG
*
90782952 TAAAAATTAAACTAAAACAAAAATA
1 TAAAAATTAAAATAAAACAAAAATA
*
90782977 TAAAAA-TAAAATAGAAATAAAAA
1 TAAAAATTAAAATA-AAACAAAAA
90783000 ATGGCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (25 bp):
TAAAAATTAAAATAAAACAAAAATA
Found at i:90785510 original size:51 final size:51
Alignment explanation
Indices: 90785454--90785553 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 51
90785444 CTACCTTATC
* * * * *
90785454 ACATGTAACACATCCATAATGAACTCGGACCTCCCAACGAGTTCGGATGTT
1 ACATGTAACACATCCATAACGAACTCAGACCACCCAACAAGATCGGATGTT
* * * *
90785505 ACATGTATCGCATCCATTACGAACTCAGACCACTCAACAAGATCGGATG
1 ACATGTAACACATCCATAACGAACTCAGACCACCCAACAAGATCGGATG
90785554 CCTCATATAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (51 bp):
ACATGTAACACATCCATAACGAACTCAGACCACCCAACAAGATCGGATGTT
Found at i:90785620 original size:43 final size:41
Alignment explanation
Indices: 90785523--90785638 Score: 133
Period size: 43 Copynumber: 2.8 Consensus size: 41
90785513 CGCATCCATT
* *
90785523 ACGAACTCAGACCACTCAACAAGATCGGATGCCTCATATATC
1 ACGAACTCGGACCACTCAACAAGATCGGAT-TCTCATATATC
* *
90785565 ACGAACTTGGACCACTCAACAAGTTCGGATTCTGACATATATC
1 ACGAACTCGGACCACTCAACAAGATCGGATTCT--CATATATC
* * * *
90785608 ACGAGCTCGGACCGCTCAACGAGCTCGGATT
1 ACGAACTCGGACCACTCAACAAGATCGGATT
90785639 TCTTAATTCC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.03
42 27 0.43
43 34 0.54
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (41 bp):
ACGAACTCGGACCACTCAACAAGATCGGATTCTCATATATC
Found at i:90805969 original size:23 final size:23
Alignment explanation
Indices: 90805939--90805985 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
90805929 TCAAATGAAA
90805939 TTTTGTGACCCGAGTTAGTATAC
1 TTTTGTGACCCGAGTTAGTATAC
90805962 TTTTGTGACCCGAGTTAGTATAC
1 TTTTGTGACCCGAGTTAGTATAC
90805985 T
1 T
90805986 GAAAGTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (23 bp):
TTTTGTGACCCGAGTTAGTATAC
Found at i:90806636 original size:27 final size:27
Alignment explanation
Indices: 90806585--90806636 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
90806575 TCAAAAAATT
* *
90806585 ATTAGAAATTATGAAAATATTATAAAA
1 ATTAGAAAATATGAAAATATAATAAAA
90806612 ATTAGAAAATATTGAAAAT-TAATAA
1 ATTAGAAAATA-TGAAAATATAATAA
90806637 TTTTATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.33
Consensus pattern (27 bp):
ATTAGAAAATATGAAAATATAATAAAA
Found at i:90807199 original size:16 final size:16
Alignment explanation
Indices: 90807178--90807245 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
90807168 TTTGGTTCGC
90807178 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
90807194 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
90807210 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
90807226 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
90807242 TGTA
1 TGTA
90807246 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:90807285 original size:45 final size:44
Alignment explanation
Indices: 90807226--90807316 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
90807216 GGATTAGAGG
* *
90807226 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
90807271 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
90807315 TG
1 TG
90807317 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:90807498 original size:16 final size:16
Alignment explanation
Indices: 90807461--90807502 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
90807451 TTAATCATAT
*
90807461 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
90807477 TT-AAATATATTATAA
1 TTAAAATATATTATAA
90807492 TTAAAATATAT
1 TTAAAATATAT
90807503 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:90807509 original size:14 final size:15
Alignment explanation
Indices: 90807470--90807511 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
90807460 TTTAAACATA
*
90807470 ATTATTATTAAATAT
1 ATTATAATTAAATAT
90807485 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
90807499 A-TATAATTTAATA
1 ATTATAATTAAATA
90807512 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:90807561 original size:61 final size:60
Alignment explanation
Indices: 90807496--90807682 Score: 195
Period size: 61 Copynumber: 3.1 Consensus size: 60
90807486 TTATAATTAA
90807496 AATATATAATTTAATAAAATTCTTAATAATCAGTATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCA-TATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * *
90807557 AATATATGATACT-ATAAAATT-TAAATTAA-CATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAT-ATTCTTATATGAATTTACTCA-AATCAT
*
90807616 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAA-TCATATTCTTATATGAATTTACTCAAATCAT
90807677 AATATA
1 AATATA
90807683 AAATCGTGTT
Statistics
Matches: 97, Mismatches: 19, Indels: 20
0.71 0.14 0.15
Matches are distributed among these distances:
58 3 0.03
59 31 0.32
60 22 0.23
61 38 0.39
62 3 0.03
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (60 bp):
AATATATAATTTAATAAAATTCTTAATAATCATATTCTTATATGAATTTACTCAAATCAT
Found at i:90807629 original size:14 final size:15
Alignment explanation
Indices: 90807580--90807631 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
90807570 ATAAAATTTA
90807580 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
90807595 TATTAAATATATTAT
1 AATTAAATATATTAT
90807610 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
90807623 AATTTAATA
1 AATTAAATA
90807632 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:90807677 original size:120 final size:120
Alignment explanation
Indices: 90807464--90807682 Score: 420
Period size: 120 Copynumber: 1.8 Consensus size: 120
90807454 ATCATATTTA
*
90807464 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAG
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
90807529 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATTTAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATTTAAATT
*
90807584 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
90807649 TATTCTTATATGAATTTACTCAAATCATAATATA
66 TATTCTTATATGAATTTACTCAAATCATAATATA
90807683 AAATCGTGTT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 97 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATTTAAATT
Found at i:90807682 original size:59 final size:59
Alignment explanation
Indices: 90807499--90807683 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
90807489 TAATTAAAAT
* *
90807499 ATATAATTTAATAAAATTCTTAATAATCAGTATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * *
90807558 ATAT-ATGATACTATAAAATT-TAAATTAACATAATTATTATTAAAT-ATATTATAATTAAA--A
1 ATATAAT-TTA--ATAAAATTCTTAA-TAA-TTAA-TATTCTTATATGA-ATT-TACTCAAATCA
90807618 T-
58 TA
90807619 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
90807678 ATATAA
1 ATATAA
90807684 AATCGTGTTG
Statistics
Matches: 96, Mismatches: 16, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
56 6 0.06
57 12 0.12
58 8 0.08
59 23 0.24
60 6 0.06
61 17 0.18
62 6 0.06
63 12 0.12
64 6 0.06
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
Found at i:90811979 original size:30 final size:31
Alignment explanation
Indices: 90811943--90812007 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
90811933 TATTTATATC
* *
90811943 TTTATAATTTTTAAAAGA-TTAAATCAAATT
1 TTTATAAATTTTAAAAGAGTTAAATAAAATT
90811973 TTTATAAATTTTAAAAGAGTTTAAATAAAATT
1 TTTATAAATTTTAAAAGAG-TTAAATAAAATT
90812005 TTT
1 TTT
90812008 TCTATTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 17 0.55
32 14 0.45
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.48
Consensus pattern (31 bp):
TTTATAAATTTTAAAAGAGTTAAATAAAATT
Found at i:90812216 original size:2 final size:2
Alignment explanation
Indices: 90812209--90812239 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
90812199 CTATCGGTGG
90812209 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90812240 TTTATTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90812678 original size:5 final size:5
Alignment explanation
Indices: 90812648--90812677 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
90812638 TATATCCCAA
*
90812648 TTTTC TTTTC TTTTC TTTTC TTTTC ATTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
90812678 AACATCAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTC
Found at i:90829563 original size:17 final size:17
Alignment explanation
Indices: 90829538--90829588 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
90829528 AAAATTTTTT
90829538 AAATATAAAAATATAAGA
1 AAATATAAAAA-ATAAGA
*
90829556 AAAT-TAAAAAAATAATA
1 AAATAT-AAAAAATAAGA
90829573 AATATATAAAAAATAA
1 AA-ATATAAAAAATAA
90829589 AAATGTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
17 8 0.28
18 20 0.69
19 1 0.03
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (17 bp):
AAATATAAAAAATAAGA
Found at i:90829584 original size:26 final size:25
Alignment explanation
Indices: 90829542--90829591 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
90829532 TTTTTTAAAT
*
90829542 ATAAAAATATAAGAAAATTAAAAAA
1 ATAAAAATATAAGAAAAATAAAAAA
90829567 ATAATAAATATATA-AAAAATAAAAA
1 ATAA-AAATATA-AGAAAAATAAAAA
90829592 TGTATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 17 0.77
27 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (25 bp):
ATAAAAATATAAGAAAAATAAAAAA
Found at i:90830186 original size:21 final size:22
Alignment explanation
Indices: 90830152--90830213 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
90830142 TATTATTTTT
* * *
90830152 TATTTTTTTGAAATTTAT-TTAC
1 TATTTTTAT-AAATTTATAATAA
90830174 TATTTTTATAAATTT-TAATAA
1 TATTTTTATAAATTTATAATAA
90830195 TATTTTTATAAATTTATAA
1 TATTTTTATAAATTTATAA
90830214 ATTTTCTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.03
21 23 0.66
22 11 0.31
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TATTTTTATAAATTTATAATAA
Found at i:90830205 original size:11 final size:10
Alignment explanation
Indices: 90830175--90830218 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
90830165 TTTATTTACT
90830175 ATTTTTATAA
1 ATTTTTATAA
*
90830185 ATTTTAATAA
1 ATTTTTATAA
90830195 TATTTTTATAA
1 -ATTTTTATAA
90830206 A--TTTATAA
1 ATTTTTATAA
90830214 ATTTT
1 ATTTT
90830219 CTTTTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
8 8 0.28
10 12 0.41
11 9 0.31
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:90832259 original size:40 final size:39
Alignment explanation
Indices: 90832206--90832289 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 39
90832196 AATTCATTAC
* *
90832206 TTCAGTAATTTCACAGTTCAATGCAGTA-CACATAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTATC-CA-AACAATA
*
90832246 TTCAGTAACTTCACAATTCAATTCAGTATTCCAAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTA-TCCAAACAATA
90832286 TTCA
1 TTCA
90832290 ATATTCCATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
40 36 0.92
41 2 0.05
42 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.32
Consensus pattern (39 bp):
TTCAGTAACTTCACAATTCAATGCAGTATCCAAACAATA
Found at i:90832271 original size:21 final size:21
Alignment explanation
Indices: 90832206--90832273 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
90832196 AATTCATTAC
* *
90832206 TTCAGTAATTTCACAGTTCAA
1 TTCAGTAACTTCACAATTCAA
* * *
90832227 TGCAGTACACATAACAA-T--A
1 TTCAGTA-ACTTCACAATTCAA
90832246 TTCAGTAACTTCACAATTCAA
1 TTCAGTAACTTCACAATTCAA
90832267 TTCAGTA
1 TTCAGTA
90832274 TTCCAAACAA
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
21 15 0.43
22 5 0.14
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (21 bp):
TTCAGTAACTTCACAATTCAA
Found at i:90832404 original size:42 final size:42
Alignment explanation
Indices: 90832345--90832430 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
90832335 ATCATAAATT
90832345 TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
1 TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
90832387 TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
1 TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
90832429 TA
1 TA
90832431 ATTAGTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.41, C:0.23, G:0.00, T:0.36
Consensus pattern (42 bp):
TATCATTTTACTAAACACTTACCTTAAAATACTTACCATACA
Found at i:90832707 original size:22 final size:22
Alignment explanation
Indices: 90832668--90832710 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
90832658 AACTAAACCT
* *
90832668 ATATATTTTTCTTTCTCAATTC
1 ATATATTTTTCGTACTCAATTC
*
90832690 ATATATTTTTGGTACTCAATT
1 ATATATTTTTCGTACTCAATT
90832711 TCTTGCCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.56
Consensus pattern (22 bp):
ATATATTTTTCGTACTCAATTC
Found at i:90833461 original size:20 final size:20
Alignment explanation
Indices: 90833438--90833494 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
90833428 TTAATTTATT
90833438 TTTAATAATAATAATCATAA
1 TTTAATAATAATAATCATAA
*
90833458 TTTAATAAT-ATAAATTATAA
1 TTTAATAATAAT-AATCATAA
*
90833478 TTTGATAGAATAATAAT
1 TTT-A-ATAATAATAAT
90833495 AATGATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 2 0.06
20 19 0.61
21 1 0.03
22 7 0.23
23 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (20 bp):
TTTAATAATAATAATCATAA
Found at i:90833654 original size:25 final size:25
Alignment explanation
Indices: 90833618--90833692 Score: 68
Period size: 27 Copynumber: 3.0 Consensus size: 25
90833608 CTTGGCTTTA
90833618 ATTTAAT--TTAATTTATAATATGAT
1 ATTTAATAATTAATTTATAATAT-AT
*
90833642 ATTT-ATAATTAATTAATTTAATAATAT
1 ATTTAATAATTAATT--TATAAT-ATAT
*
90833669 ATTTAATAATTAAATTAT-ATATAT
1 ATTTAATAATTAATTTATAATATAT
90833693 TTACATAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
23 2 0.05
24 8 0.19
25 8 0.19
26 2 0.05
27 11 0.26
28 11 0.26
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (25 bp):
ATTTAATAATTAATTTATAATATAT
Found at i:90833688 original size:20 final size:21
Alignment explanation
Indices: 90833645--90833703 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
90833635 ATATGATATT
* *
90833645 TATAATTAATTAATTTAATAA
1 TATATTTAATTAATTAAATAA
90833666 TATATTTAA-TAATTAAATTATA
1 TATATTTAATTAATTAAA-TA-A
90833688 TATATTTACA-TAATTA
1 TATATTTA-ATTAATTA
90833704 TAATCTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.21
21 10 0.30
22 9 0.27
23 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TATATTTAATTAATTAAATAA
Found at i:90835249 original size:49 final size:49
Alignment explanation
Indices: 90835172--90835416 Score: 310
Period size: 49 Copynumber: 4.9 Consensus size: 49
90835162 TAGCCGAAGC
* * *
90835172 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
90835221 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
90835271 CATCTGATACACGTAGTAGCCTGCACTTTGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
90835322 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
90835371 TATCTGGTACACGTAGTAGCCTGCACTTAGTTCTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
90835417 TCACAATAGC
Statistics
Matches: 166, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 82 0.49
50 47 0.28
51 37 0.22
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:90835354 original size:101 final size:98
Alignment explanation
Indices: 90835185--90835416 Score: 320
Period size: 100 Copynumber: 2.3 Consensus size: 98
90835175 CTGGTACGCA
* * * *
90835185 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
90835250 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* * *
90835284 TAGTAGCCTGCACTTTGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
90835349 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
*
90835384 TAGTAGCCTGCACTTAGTTCTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
90835417 TCACAATAGC
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 29 0.25
100 45 0.39
101 42 0.36
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:90842352 original size:45 final size:45
Alignment explanation
Indices: 90842287--90842399 Score: 174
Period size: 45 Copynumber: 2.5 Consensus size: 45
90842277 TAATCAGTAA
* * *
90842287 CTGTAGCAATAACAGTAACAGTATTCAACACACAAAGTG-CTGAAT
1 CTGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAAT
90842332 CTGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAAT
1 CTGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAAT
*
90842377 CGGTAACAGTAACGGTAACAGTA
1 CTGTAACAGTAACGGTAACAGTA
90842400 ACAGTAGTCG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 62 0.98
46 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (45 bp):
CTGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAAT
Found at i:90842394 original size:12 final size:12
Alignment explanation
Indices: 90842377--90842401 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90842367 AGTGTCGAAT
90842377 CGGTAACAGTAA
1 CGGTAACAGTAA
90842389 CGGTAACAGTAA
1 CGGTAACAGTAA
90842401 C
1 C
90842402 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:90843494 original size:13 final size:14
Alignment explanation
Indices: 90843473--90843519 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
90843463 CTTTACATTG
*
90843473 TTTTGTTTC-TTTA
1 TTTTATTTCATTTA
*
90843486 TTTTATTTCATTTC
1 TTTTATTTCATTTA
*
90843500 TTTTA-TTCTTTTA
1 TTTTATTTCATTTA
90843513 TTTTATT
1 TTTTATT
90843520 AACTTAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.77
Consensus pattern (14 bp):
TTTTATTTCATTTA
Found at i:90843803 original size:3 final size:3
Alignment explanation
Indices: 90843795--90843840 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
90843785 AATTTATTTT
* * *
90843795 TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TCA TAA T-T TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
90843841 TAAATTATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
2 1 0.03
3 35 0.97
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:90844065 original size:24 final size:23
Alignment explanation
Indices: 90844035--90844078 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
90844025 AATTAATTTA
90844035 ATAATATATTTA-ATAATTAAAT
1 ATAATATATTTACATAATTAAAT
90844057 -TATATATATTTACATAATTAAA
1 ATA-ATATATTTACATAATTAAA
90844079 ATCTAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATAATATATTTACATAATTAAAT
Found at i:90853160 original size:12 final size:12
Alignment explanation
Indices: 90853143--90853175 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
90853133 TTCCCTGTAA
90853143 AATAGTAAAAAT
1 AATAGTAAAAAT
*
90853155 AATAGTAAGAAT
1 AATAGTAAAAAT
90853167 AATAGTAAA
1 AATAGTAAA
90853176 GGGGAAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:90854084 original size:10 final size:10
Alignment explanation
Indices: 90854063--90854124 Score: 74
Period size: 10 Copynumber: 6.1 Consensus size: 10
90854053 AATAAAATTC
90854063 TAAACGATAAA
1 TAAA-GATAAA
90854074 TACAA-ATAAA
1 TA-AAGATAAA
*
90854084 TAAAGATAAT
1 TAAAGATAAA
90854094 TAAAGATAAA
1 TAAAGATAAA
90854104 TAAAGATAAA
1 TAAAGATAAA
90854114 TGAAA-ATAAA
1 T-AAAGATAAA
90854124 T
1 T
90854125 CCTAAAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
9 2 0.04
10 37 0.80
11 5 0.11
12 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.23
Consensus pattern (10 bp):
TAAAGATAAA
Done.