Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 275 of 316
Found at i:91182230 original size:27 final size:28
Alignment explanation
Indices: 91182155--91182231 Score: 70
Period size: 27 Copynumber: 2.8 Consensus size: 28
91182145 GAGATATTTT
* * **
91182155 GATATTCTATAATTATTTAATTAGATAA
1 GATATTTTATTATTATTTTTTTAGATAA
* *
91182183 -ATATTATT-TTATTAATATTTTA-ATAA
1 GATATT-TTATTATTATTTTTTTAGATAA
91182209 GATATTTTATTATTATTTTTTTA
1 GATATTTTATTATTATTTTTTTA
91182232 TTATTTTATT
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
26 6 0.16
27 31 0.82
28 1 0.03
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (28 bp):
GATATTTTATTATTATTTTTTTAGATAA
Found at i:91184139 original size:46 final size:46
Alignment explanation
Indices: 91184087--91184452 Score: 439
Period size: 46 Copynumber: 8.0 Consensus size: 46
91184077 GGTCTCTGAA
** *
91184087 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
91184133 ATGAAAT-ATGTAAAACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
91184179 ATGAAATGTGTAAAACCATGGATGAAAGATATCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
91184225 ATGAAAAGAATAAGATCATGGTTGAGAGATACCATAGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
91184271 GGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
91184317 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
91184363 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
91184409 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
91184453 TCAAAGAAAA
Statistics
Matches: 277, Mismatches: 40, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.00
46 276 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:91184335 original size:138 final size:138
Alignment explanation
Indices: 91184097--91184452 Score: 505
Period size: 138 Copynumber: 2.6 Consensus size: 138
91184087 ATGAAATGTG
* * * *
91184097 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATATGTAAAACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* ** *
91184162 CACCATGGCAACATGATATGAAATGTGTAAAACCATGGATGAAAGATATCATGGCAACGTGACAT
66 CACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
91184227 GAAAAGAA
131 GAAAAGAA
* * * * *
91184235 TAAGATCATGGTTGAGAGATACCATAGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* * * * *
91184300 TACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
66 CACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
91184365 GAAAAGAA
131 GAAAAGAA
* * *
91184373 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
* *
91184438 CACTATGGCATCATG
66 CACCATGGCAACATG
91184453 TCAAAGAAAA
Statistics
Matches: 188, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
138 188 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAGTAAGACCATGGTTGAAAGA
CACCATGGCAACATGACATGAAATGAATAAAACCATGGATGAAAGATACCATGGCAACGTGACAT
GAAAAGAA
Found at i:91187307 original size:22 final size:22
Alignment explanation
Indices: 91187277--91187343 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
91187267 ATGTATTTAC
*
91187277 TTATTATTTAAGAAAT-TAATAA
1 TTATAATTTAA-AAATATAATAA
*
91187299 TTATAATTTAATAATATAATAA
1 TTATAATTTAAAAATATAATAA
*
91187321 -TATAATAGTTAATAATATAATAA
1 TTATAAT--TTAAAAATATAATAA
91187344 AAGAAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.22
22 16 0.40
23 15 0.38
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (22 bp):
TTATAATTTAAAAATATAATAA
Found at i:91187335 original size:23 final size:22
Alignment explanation
Indices: 91187293--91187343 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
91187283 TTTAAGAAAT
91187293 TAATAATTATAATTTAATAATA
1 TAATAATTATAATTTAATAATA
91187315 TAATAA-TATAATAGTTAATAATA
1 TAATAATTATAAT--TTAATAATA
91187338 TAATAA
1 TAATAA
91187344 AAGAAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.22
22 6 0.22
23 15 0.56
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
TAATAATTATAATTTAATAATA
Found at i:91187352 original size:12 final size:11
Alignment explanation
Indices: 91187337--91187388 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 11
91187327 AGTTAATAAT
91187337 ATAATAAAAGAA
1 ATAA-AAAAGAA
91187349 ATAATAAAAG-A
1 ATAA-AAAAGAA
91187360 ATAAAGAAATGAA
1 ATAAA-AAA-GAA
91187373 ATAGAAAAAGAA
1 ATA-AAAAAGAA
91187385 ATAA
1 ATAA
91187389 CGACAAGGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 1 0.03
11 9 0.25
12 17 0.47
13 7 0.19
14 2 0.06
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (11 bp):
ATAAAAAAGAA
Found at i:91188280 original size:24 final size:24
Alignment explanation
Indices: 91188253--91188300 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
91188243 AGGTACTTTG
91188253 TACCTGACTATGACTGTTACTGTT
1 TACCTGACTATGACTGTTACTGTT
91188277 TACCTGACTATGACTGTTACTGTT
1 TACCTGACTATGACTGTTACTGTT
91188301 ACTGTTACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (24 bp):
TACCTGACTATGACTGTTACTGTT
Found at i:91188298 original size:6 final size:6
Alignment explanation
Indices: 91188289--91188320 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
91188279 CCTGACTATG
91188289 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
91188321 CCTACGGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (6 bp):
ACTGTT
Found at i:91194741 original size:8 final size:8
Alignment explanation
Indices: 91194722--91194767 Score: 62
Period size: 8 Copynumber: 6.1 Consensus size: 8
91194712 TTTAAGAAAT
91194722 TAATAAT-
1 TAATAATA
91194729 T-ATAATA
1 TAATAATA
91194736 TAATAATA
1 TAATAATA
91194744 TAATAATA
1 TAATAATA
*
91194752 TAATAGT-
1 TAATAATA
91194759 TAATAATA
1 TAATAATA
91194767 T
1 T
91194768 TGCAAAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 5 0.15
7 8 0.24
8 21 0.62
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (8 bp):
TAATAATA
Found at i:91203107 original size:16 final size:15
Alignment explanation
Indices: 91203081--91203115 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
91203071 TTATGTGAAT
91203081 AATATAAAATATTAA
1 AATATAAAATATTAA
*
91203096 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
91203112 AATA
1 AATA
91203116 ATAATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:91203970 original size:11 final size:12
Alignment explanation
Indices: 91203929--91203979 Score: 50
Period size: 12 Copynumber: 4.0 Consensus size: 12
91203919 GAAAAATGTA
91203929 ATTTTTT-TTAT
1 ATTTTTTATTAT
*
91203940 ATTTGTTTTGTATAT
1 A-TT-TTTTAT-TAT
91203955 ATATTTTTATTAT
1 AT-TTTTTATTAT
91203968 ATTTTTTATTAT
1 ATTTTTTATTAT
91203980 GATGTATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
11 1 0.03
12 12 0.35
13 9 0.26
14 7 0.21
15 5 0.15
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.73
Consensus pattern (12 bp):
ATTTTTTATTAT
Found at i:91204051 original size:18 final size:18
Alignment explanation
Indices: 91204016--91204069 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
91204006 CGAAAAAAGG
91204016 AAAAA-AATAAA-AA-AT
1 AAAAATAATAAAGAAGAT
*
91204031 AAAAATAA-AAATAAGAGT
1 AAAAATAATAAAGAAGA-T
91204049 -AAAATAATAAAGAAGAT
1 AAAAATAATAAAGAAGAT
91204066 AAAA
1 AAAA
91204070 TCACCTTTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
15 8 0.25
16 4 0.12
17 9 0.28
18 11 0.34
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (18 bp):
AAAAATAATAAAGAAGAT
Found at i:91204054 original size:17 final size:17
Alignment explanation
Indices: 91204032--91204070 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
91204022 ATAAAAAATA
*
91204032 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
91204049 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
91204066 AAAAT
1 AAAAT
91204071 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:91204478 original size:227 final size:228
Alignment explanation
Indices: 91204083--91204543 Score: 845
Period size: 227 Copynumber: 2.0 Consensus size: 228
91204073 CCTTTAGGTA
91204083 TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCCCCTCCCTTACATGATTTTTGAATGGC
1 TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCCCCTCCCTTACATGATTTTTGAATGGC
91204148 TTTTTATAGCCATCTTTTACATGATTTTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
66 TTTTTATAGCCATCTTTTACATGATTTTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
91204213 AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGC-AGGTGGCTAGGG
131 AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGCTAGGG
91204277 TTTCTTGGTTTTTTTGGTGGGGGTTAGGTTTTT-
196 TTTCTTGGTTTTTTTGG-GGGGGTTAGGTTTTTC
* *
91204310 TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCTCCTCCTTTACATGATTTTTGAATGGC
1 TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCCCCTCCCTTACATGATTTTTGAATGGC
* *
91204375 TTTTTATAGCCATTTTTTACATGATTTTCTTTTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
66 TTTTTATAGCCATCTTTTACATGATTTTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
91204440 AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGCTAGGG
131 AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGCTAGGG
* *
91204505 TTTCTTGTTTTTTTTTGGGGGGTTAGGTTTTTC
196 TTTCTTGGTTTTTTTGGGGGGGTTAGGTTTTTC
91204538 TTTTTT
1 TTTTTT
91204544 TTTTTTTGGG
Statistics
Matches: 226, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
227 193 0.85
228 33 0.15
ACGTcount: A:0.22, C:0.10, G:0.24, T:0.43
Consensus pattern (228 bp):
TTTTTTGAAGATAAATTCTTTGTATTGATCAAAATTCCCCCTCCCTTACATGATTTTTGAATGGC
TTTTTATAGCCATCTTTTACATGATTTTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGT
AGACAATGGATATCAAAAATGGGAGGAAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGCTAGGG
TTTCTTGGTTTTTTTGGGGGGGTTAGGTTTTTC
Found at i:91204547 original size:29 final size:27
Alignment explanation
Indices: 91204505--91204563 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 27
91204495 GTGGCTAGGG
91204505 TTTCTTGTTTTTTTTTGGGGGGTTAGGTT
1 TTTCTTGTTTTTTTTT--GGGGTTAGGTT
* *
91204534 TTTCTTTTTTTTTTTTTGGGTTAGGTT
1 TTTCTTGTTTTTTTTTGGGGTTAGGTT
91204561 TTT
1 TTT
91204564 TTGGGGGGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 13 0.46
29 15 0.54
ACGTcount: A:0.03, C:0.03, G:0.24, T:0.69
Consensus pattern (27 bp):
TTTCTTGTTTTTTTTTGGGGTTAGGTT
Found at i:91204565 original size:29 final size:29
Alignment explanation
Indices: 91204505--91204563 Score: 86
Period size: 27 Copynumber: 2.1 Consensus size: 29
91204495 GTGGCTAGGG
91204505 TTTCTTGTTTTTTTTTGGGGGGTTAGGTT
1 TTTCTTGTTTTTTTTTGGGGGGTTAGGTT
**
91204534 TTTCTT-TTTTTTTTT-TTGGGTTAGGTT
1 TTTCTTGTTTTTTTTTGGGGGGTTAGGTT
91204561 TTT
1 TTT
91204564 TTGGGGGGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 13 0.46
28 9 0.32
29 6 0.21
ACGTcount: A:0.03, C:0.03, G:0.24, T:0.69
Consensus pattern (29 bp):
TTTCTTGTTTTTTTTTGGGGGGTTAGGTT
Found at i:91205470 original size:92 final size:86
Alignment explanation
Indices: 91205238--91205760 Score: 347
Period size: 87 Copynumber: 5.9 Consensus size: 86
91205228 AAAACTAGAC
* * * *
91205238 ATTAAAAACAGA-AATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAAT
1 ATTAAAAACA-ATAATTGAAAATACCTC-G-ACGTGTGCCTGAGGCTCAACTCACCTCTCGCAAT
*
91205301 ATGAGTTGATTTTT-AAAACA-AA
63 ATGAGTTGATTTTTGCAAACATAA
* * ** * * *
91205323 ATTTGTAAAAC-ATATTATGAAAATACCTCGATATGTGACCCGAAGCTCAACTCACCTCTCGTAA
1 A-TT-AAAAACAATAAT-TGAAAATACCTCGACGTGTG-CCTGAGGCTCAACTCACCTCTCGCAA
91205387 TATGAGTTGATTTTTGCAAAGCATAA
62 TATGAGTTGATTTTTGCAAA-CATAA
*
91205413 ATTAAAAAAACACATCAATTGAAAATACCTCGGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCA
1 ATT--AAAAACA-AT-AATTGAAAATACCTCGACGTGT-GCCTGAGGCTCAACTCACCTCTCGCA
91205478 ATATGAGTTGATTTTTTTTGACAAACATAA
61 ATATGAGTTGA---TTTTTG-CAAACATAA
* * *
91205508 ATTGAAAA-AA-AATTGAAAATACCTCAACGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATG
1 ATTAAAAACAATAATTGAAAATACCTCGACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATG
*
91205570 AGTTGATTTTTTTTGGAAAAACA-AA
66 AGTTGA---TTTTT-G-CAAACATAA
* * ** * *
91205595 ATTTTAAAAATAGA-ATTTGAAAATACCTC-AGCGTGTGAGTCAAGGCTCAACTCACCACTCGCA
1 A--TTAAAAACA-ATAATTGAAAATACCTCGA-CGTGTGCCT-GAGGCTCAACTCACCTCTCGCA
* * * *
91205658 ACATGAGCTGATTTTTTTGAAACACAGAA
61 ATATGAGTTGA--TTTTTGCAA-ACATAA
* * * * * *
91205687 ATTGAAGAACAGA-AATGGAAAACACCTC-A-GCGT-CTTGAGGTTCAACTCACCTCTCGCAATA
1 ATT-AAAAACA-ATAATTGAAAATACCTCGACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATA
*
91205748 TGAGCTGATTTTT
64 TGAGTTGATTTTT
91205761 TTGAAAGACA
Statistics
Matches: 363, Mismatches: 46, Indels: 58
0.78 0.10 0.12
Matches are distributed among these distances:
85 11 0.03
86 7 0.02
87 125 0.34
88 11 0.03
89 33 0.09
90 15 0.04
91 45 0.12
92 63 0.17
93 35 0.10
95 14 0.04
96 4 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (86 bp):
ATTAAAAACAATAATTGAAAATACCTCGACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGCAAACATAA
Found at i:91205672 original size:180 final size:177
Alignment explanation
Indices: 91205239--91206416 Score: 608
Period size: 179 Copynumber: 6.9 Consensus size: 177
91205229 AAACTAGACA
* ** *
91205239 TTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * *
91205304 AGTTGA--TTTTT-AAAACAAAATTTGTAAAACATATTATGAAAATACCTCGATATGTGACCCGA
66 AGTTGATTTTTTTGAAAACAAAA-TTG-AAAACAAAAT-TGAAAATACCTC-A-A-GTGTCCTGA
* * * *
91205366 AGCTCAACTCACCTCTCGTAATATGAGTTGA---TTTTTGCAAAGCATAAATT
125 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
** * * *
91205416 AAAAAAACACATCAATTGAAAATACCTCGGCGTGTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
1 TTAAAAACAGA--AATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAAT
91205480 ATGAGTTGATTTTTTTTGACAAACATAAATTGAAAA-AAAATTGAAAATACCTCAACGTGTCCTG
63 ATGAGTTGA-TTTTTTTGA-AAACA-AAATTGAAAACAAAATTGAAAATACCTCAA-GTGTCCTG
*
91205544 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACA-AAATT
124 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT-GAAAAACATAAATT
* * * * *
91205598 TTAAAAATAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAACATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * * *
91205663 AGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTC-AGCGTCTTGAGG
66 AGTTGATTTTTTTGAAA-ACA-AAATTGAA-AACA-AAATTGAAAATACCTCAAGTGTCCTGAGG
* *
91205727 TTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTG-------------
127 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
* * **
91205764 --AAAGACAGAAATTGAAAATACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATAT
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATAT
* * ** * *
91205824 GAGTTGA--TTTTTG-AAACTTAACTTGAAAAGCAGATTTTGAAAATGCCTCGATA-TGTGACTC
65 GAGTTGATTTTTTTGAAAAC-AAAATTGAAAA-CA-AAATTGAAAATACCTC-A-AGTGT-CCT-
* * * * ** *
91205885 AAGACTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTGAAAGGCAGAAA-T
123 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
* * * * **
91205939 TGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * * * *
91206004 AGTTGA-----TTG-AAA-AAAA---AATAC----CT--CAGT--GT---GTGAT-CTGAAGCTC
66 AGTTGATTTTTTTGAAAACAAAATTGAAAACAAAATTGAAAATACCTCAAGTG-TCCTGAGGCTC
91206047 AACTCACCTCTCGCAATATGAGTTGA--TTTTTTG-------------
130 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
* * * *
91206080 --AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * ** *
91206143 AGTCGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTG
66 AGTTGATTTTTTTGAAA-ACA-AAATTG-AAAAC-AAAATTGAAAATACCTC-AAGTGT--CCTG
*
91206208 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGAC-------
124 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
* ** *
91206254 ------A-A-AAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTTAACTCACCTCTCGCAATATG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
** * * **
91206311 AGTCAATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCT
66 AGTTGA-TTTTTTTGAAA-ACA-AAATTG-AAAAC-AAAATTGAAAATACCTC-AAGTGT--CCT
* * *
91206376 GAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTT
123 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
91206417 ACAACAGAAA
Statistics
Matches: 812, Mismatches: 105, Indels: 175
0.74 0.10 0.16
Matches are distributed among these distances:
139 59 0.07
144 3 0.00
145 2 0.00
147 1 0.00
148 3 0.00
152 4 0.00
153 7 0.01
155 28 0.03
156 2 0.00
157 5 0.01
158 24 0.03
159 4 0.00
160 8 0.01
161 4 0.00
162 56 0.07
163 10 0.01
164 28 0.03
165 4 0.00
167 34 0.04
168 64 0.08
169 88 0.11
170 9 0.01
171 3 0.00
174 2 0.00
176 6 0.01
177 35 0.04
178 6 0.01
179 147 0.18
180 89 0.11
181 16 0.02
182 39 0.05
183 11 0.01
184 8 0.01
185 3 0.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (177 bp):
TTAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAAACAAAATTGAAAACAAAATTGAAAATACCTCAAGTGTCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATT
Found at i:91205714 original size:91 final size:85
Alignment explanation
Indices: 91205429--91206011 Score: 414
Period size: 87 Copynumber: 6.7 Consensus size: 85
91205419 AAAACACATC
* *
91205429 AATTGAAAATACCTCGGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGT----TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
*
91205494 TTTGACAAACATAAATTGAAAAA-A
62 TTTGA-AAACAGAAATTGAAAAAGA
* * *
91205518 AATTGAAAATACCTCAACGTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGT--TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
*
91205583 TGGAAAAACA-AAATTTTAAAAATAGA
64 T-G-AAAACAGAAA--TTGAAAA-AGA
* * * *
91205609 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAACATGAGCTGA-TTTT
1 AATTGAAAATACCTCAGCGTGT---T-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
91205673 TTTGAAACACAGAAATTGAAGAACAGA
62 TTTGAAA-ACAGAAATTGAA-AA-AGA
* * * *
91205700 AATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTT-
1 AATTGAAAATACCTCAGCGTGTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTG
*
91205763 ------GAAA--G--ACAGA
66 AAAACAGAAATTGAAAAAGA
* *
91205773 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTT
1 AATTGAAAATACCTCAGCGTG--TTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
** *
91205835 TG-AAACTTAACTTGAAAAGCAGA
64 TGAAAACAGAAATTGAAAA--AGA
** * ** ** * *
91205858 TTTTGAAAATGCCTCGATATGTGACTCAAGACTCAACTCACCTCTCGTAATATGAG-TCGATTTT
1 AATTGAAAATACCTC-A-GCGTG--TTGAGGCTCAACTCACCTCTCGCAATATGAGCT-GATTTT
*
91205922 TTTTGAAAGGCAGAAATTGAAAAACGGA
61 TTTTGAAA-ACAGAAATTGAAAAA--GA
* *
91205950 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AATTGAAAATACCTCAGC--GTG-T-TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
91206012 GAAAAAAAAA
Statistics
Matches: 398, Mismatches: 57, Indels: 75
0.75 0.11 0.14
Matches are distributed among these distances:
73 25 0.06
74 1 0.00
75 33 0.08
77 1 0.00
79 6 0.02
81 1 0.00
83 1 0.00
85 15 0.04
86 2 0.01
87 116 0.29
88 7 0.02
89 27 0.07
90 15 0.04
91 51 0.13
92 68 0.17
93 29 0.07
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (85 bp):
AATTGAAAATACCTCAGCGTGTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTG
AAAACAGAAATTGAAAAAGA
Found at i:91205817 original size:75 final size:73
Alignment explanation
Indices: 91205695--91205835 Score: 219
Period size: 75 Copynumber: 1.9 Consensus size: 73
91205685 AAATTGAAGA
*
91205695 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
91205760 TTTGAAAG
66 TTTGAAAG
* * * *
91205768 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
91205833 TTT
64 TTT
91205836 GAAACTTAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 18 0.30
74 1 0.02
75 42 0.69
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (73 bp):
ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTTGAAAG
Found at i:91206003 original size:92 final size:89
Alignment explanation
Indices: 91205761--91206011 Score: 269
Period size: 92 Copynumber: 2.8 Consensus size: 89
91205751 GCTGATTTTT
* * *
91205761 TTGAAAGACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
** *
91205824 GAGTTGA--TTTTTGAAACTTAAC
66 GAGTTGATTTTTTTGAAACAGAAA
* ** * ** * * *
91205846 TTGAAAAGCAGATTTTGAAAATGCCTCGATATGTGA-CTCAAGACTCAACTCACCTCTCGTAATA
1 TTGAAAAACAGAAATTGAAAATACCTCGACGTGTGATCT-GAGGCTCAACTCACCTCTCGCAATA
*
91205910 TGAGTCGATTTTTTTTGAAAGGCAGAAA
65 TGAGTTGA-TTTTTTTGAAA--CAGAAA
* *
91205938 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
91206003 GAGTTGATT
66 GAGTTGATT
91206012 GAAAAAAAAA
Statistics
Matches: 129, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
85 26 0.20
86 1 0.01
87 29 0.22
90 9 0.07
91 2 0.02
92 60 0.47
93 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (89 bp):
TTGAAAAACAGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAAACAGAAA
Found at i:91206025 original size:63 final size:63
Alignment explanation
Indices: 91205955--91206074 Score: 213
Period size: 63 Copynumber: 1.9 Consensus size: 63
91205945 ACGGAAATTG
* *
91205955 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAAAA
1 AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAAAA
*
91206018 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATT
91206075 TTTTGAAAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (63 bp):
AAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAAAA
Found at i:91206232 original size:91 final size:91
Alignment explanation
Indices: 91206077--91206265 Score: 270
Period size: 91 Copynumber: 2.1 Consensus size: 91
91206067 AGTTGATTTT
* * *
91206077 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* *
91206142 GAGTCGATTTTTTTGAAAGGCAGAAA
66 GAGTCGATTTTTTTGAAAGACAAAAA
* * * * **
91206168 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
91206233 GAGTTGATTTTTTTGAAAGACAAAAA
66 GAGTCGATTTTTTTGAAAGACAAAAA
91206259 TTGAAAA
1 TTGAAAA
91206266 TAGCTCAGCA
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (91 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTTTTGAAAGACAAAAA
Found at i:91206400 original size:169 final size:168
Alignment explanation
Indices: 91206018--91206489 Score: 711
Period size: 169 Copynumber: 2.8 Consensus size: 168
91206008 GATTGAAAAA
* * *
91206018 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
*
91206082 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGC-CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTC
91206147 GA-TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
130 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
91206185 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* *
91206250 AGACAAAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTTAACTCACCTCTCGCAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGC-CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTC
*
91206315 AATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
130 GATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* * * * * *
91206354 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTTAC
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * * * *
91206419 A-ACAGAAATTGAAATTACCTCAG-CGTG-TCCTGAGGCTCAACTCACCTCTCACAATATGAGTT
66 AGACAGAAATTGAAAATAGCTCAGCCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTC
91206481 GATTTTTTT
130 GATTTTTTT
91206490 AAAAAAATAC
Statistics
Matches: 279, Mismatches: 23, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
165 2 0.01
166 39 0.14
167 52 0.19
168 90 0.32
169 96 0.34
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (168 bp):
AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AGACAGAAATTGAAAATAGCTCAGCCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCG
ATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
Found at i:91206489 original size:76 final size:75
Alignment explanation
Indices: 91206347--91206613 Score: 238
Period size: 76 Copynumber: 3.7 Consensus size: 75
91206337 TTGAAAAACG
* * *
91206347 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTT
91206412 TTTTTACAACA
65 TTTTTACAACA
* * *
91206423 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
91206486 TTTT------
66 TTTTACAACA
* * * *
91206490 -AAA---AAAATACCTCAGCGCGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
***
91206550 TGAAACATACGA
66 TTTTACA-AC-A
* * * * * *
91206562 AAAATTGACAATACCTCAGCATGT-CCCGAGGCTCAACTCACCTCTCGCAATA
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATA
91206614 TGAATTGAAT
Statistics
Matches: 162, Mismatches: 16, Indels: 26
0.79 0.08 0.13
Matches are distributed among these distances:
63 50 0.31
64 4 0.02
66 3 0.02
73 10 0.06
74 32 0.20
76 63 0.39
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
TTTTACAACA
Found at i:91206604 original size:139 final size:138
Alignment explanation
Indices: 91206354--91206626 Score: 370
Period size: 139 Copynumber: 2.0 Consensus size: 138
91206344 ACGGAAATTG
* * * ***
91206354 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTTAC
1 AAAATACCTCAGCGCGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTGAAAC
* * * * *
91206419 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAT
65 AACAAAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCACAATATGAATTGAA
91206484 TTTTTTAAA
130 TTTTTTAAA
* *
91206493 AAAATACCTCAGCGCGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACA
1 AAAATACCTCAGCGCGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTGAAACA
*
91206557 TACGAAAAATTGACAA-TACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTG
66 -AC-AAAAATTGA-AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCACAATATGAATTG
91206621 AATTTT
128 AATTTT
91206627 GAAATAAAAC
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
137 41 0.35
138 2 0.02
139 72 0.62
140 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (138 bp):
AAAATACCTCAGCGCGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTGAAACA
ACAAAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCACAATATGAATTGAAT
TTTTTAAA
Found at i:91213595 original size:27 final size:26
Alignment explanation
Indices: 91213565--91213740 Score: 163
Period size: 27 Copynumber: 6.5 Consensus size: 26
91213555 AATTGTACAG
91213565 CACTAAGTGTGCGATTTGACTATGTTA
1 CACTAAGTGTGCGATTTGACTATG-TA
** * *
91213592 CACTAAGTGTGCGAAATGAATATGATG
1 CACTAAGTGTGCGATTTGACTATG-TA
* * **
91213619 CACTAAGTGTGCGAATTGACCATGCGG
1 CACTAAGTGTGCGATTTGACTATG-TA
91213646 CACTAAGTGTGCGAGTTTGACTATGTA
1 CACTAAGTGTGCGA-TTTGACTATGTA
* *
91213673 GCACTAAGTGTGCGATTTGATTACGTA
1 -CACTAAGTGTGCGATTTGACTATGTA
* * *
91213700 GCACTAAGTGTGCGAGTTGATTATATA
1 -CACTAAGTGTGCGATTTGACTATGTA
*
91213727 GCACTGAGTGTGCG
1 -CACTAAGTGTGCG
91213741 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (26 bp):
CACTAAGTGTGCGATTTGACTATGTA
Found at i:91213624 original size:54 final size:54
Alignment explanation
Indices: 91213563--91213740 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 54
91213553 TAAATTGTAC
*
91213563 AGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGAATTGAATATGAT
* * ** * *
91213618 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGA-ATTGAATATGAT
* * * *
91213672 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTA-CACTAAGTGTGCGAATTGAATATGAT
*
91213726 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91213741 GACTCAATAT
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
54 60 0.59
55 42 0.41
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTACACTAAGTGTGCGAATTGAATATGAT
Found at i:91213678 original size:82 final size:81
Alignment explanation
Indices: 91213564--91213719 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
91213554 AAATTGTACA
*
91213564 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91213628 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91213645 GCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
91213709 GTGCGAGTTGA
64 GTGCGAATTGA
91213720 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 17 0.25
82 49 0.73
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91213731 original size:82 final size:81
Alignment explanation
Indices: 91213560--91213740 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
91213550 GATTAAATTG
*
91213560 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
91213625 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91213641 TGCGGCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
91213704 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
91213723 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91213741 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91221779 original size:16 final size:15
Alignment explanation
Indices: 91221753--91221787 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
91221743 TGATGTGAAT
91221753 AATATAAAATATTAA
1 AATATAAAATATTAA
*
91221768 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
91221784 AATA
1 AATA
91221788 ATAATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:91221967 original size:20 final size:21
Alignment explanation
Indices: 91221928--91221970 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
91221918 CCTTTTTTAG
*
91221928 AATAATAATTAAATATACAAA
1 AATAATAATTAAATACACAAA
*
91221949 AATAAT-ATTATATACACAAA
1 AATAATAATTAAATACACAAA
91221969 AA
1 AA
91221971 GGTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (21 bp):
AATAATAATTAAATACACAAA
Found at i:91222661 original size:13 final size:13
Alignment explanation
Indices: 91222615--91222665 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
91222605 AAAAATGTAA
91222615 TTTTTT-TTATAT
1 TTTTTTATTATAT
*
91222627 TTGTTTTGTATATAT
1 TT-TTTTAT-TATAT
*
91222642 ATTTTTATTATAT
1 TTTTTTATTATAT
91222655 TTTTTTATTAT
1 TTTTTTATTAT
91222666 GATGTATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 2 0.06
13 19 0.58
14 6 0.18
15 6 0.18
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (13 bp):
TTTTTTATTATAT
Found at i:91222731 original size:17 final size:17
Alignment explanation
Indices: 91222711--91222749 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
91222701 GAAAAAAATA
*
91222711 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
91222728 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
91222745 AAAAT
1 AAAAT
91222750 CGCCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:91223016 original size:28 final size:26
Alignment explanation
Indices: 91222965--91223014 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
91222955 GGTTTCTTGG
91222965 TTTTTTTTGGGGGGTTAGGTTTTTCT
1 TTTTTTTTGGGGGGTTAGGTTTTTCT
**
91222991 TTTTTTTTTTGGGGTTAGGTTTTT
1 TTTTTTTTGGGGGGTTAGGTTTTT
91223015 TTGGGGGGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.04, C:0.02, G:0.28, T:0.66
Consensus pattern (26 bp):
TTTTTTTTGGGGGGTTAGGTTTTTCT
Found at i:91223552 original size:36 final size:35
Alignment explanation
Indices: 91223482--91223551 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 35
91223472 GATTAAACAA
* **
91223482 TAATTTTAGAATTTTAAAAAATATTTTTGAAAAAT
1 TAATTTTAAAATTTTAAAAAATATTAGTGAAAAAT
*
91223517 TAATTTTAAAGATTTTAAATAATTATTAGTGAAAA
1 TAATTTTAAA-ATTTTAAA-AAATATTAGTGAAAA
91223552 TAATCAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 9 0.31
36 8 0.28
37 12 0.41
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (35 bp):
TAATTTTAAAATTTTAAAAAATATTAGTGAAAAAT
Found at i:91235375 original size:24 final size:24
Alignment explanation
Indices: 91235345--91235399 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
91235335 CTGTGGAGAT
* *
91235345 TGATGATGCTT-TGGTGATTGAAGA
1 TGATGATACTTCTGATGA-TGAAGA
*
91235369 TGATGATATTTCTGATGATGAAGA
1 TGATGATACTTCTGATGATGAAGA
91235393 TGATGAT
1 TGATGAT
91235400 CATGAAGACG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.38
Consensus pattern (24 bp):
TGATGATACTTCTGATGATGAAGA
Found at i:91239991 original size:15 final size:15
Alignment explanation
Indices: 91239971--91240001 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
91239961 ATCGACAATA
91239971 TAGATGGCGGTTTGT
1 TAGATGGCGGTTTGT
91239986 TAGATGGCGGTTTGT
1 TAGATGGCGGTTTGT
91240001 T
1 T
91240002 CATGTGGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.06, G:0.39, T:0.42
Consensus pattern (15 bp):
TAGATGGCGGTTTGT
Found at i:91240196 original size:29 final size:29
Alignment explanation
Indices: 91240163--91240223 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
91240153 TGGTGGTTGA
* * *
91240163 AAGCGGATGGTCTGTTAGAGGTCAAAAGT
1 AAGCGGATGGTCTGCTAGAGGGCAAAAAT
*
91240192 AAGCGGATGGTTTGCTAGAGGGCAAAAAT
1 AAGCGGATGGTCTGCTAGAGGGCAAAAAT
91240221 AAG
1 AAG
91240224 TAGTGTGAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.10, G:0.34, T:0.21
Consensus pattern (29 bp):
AAGCGGATGGTCTGCTAGAGGGCAAAAAT
Found at i:91241183 original size:13 final size:13
Alignment explanation
Indices: 91241165--91241192 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
91241155 GCACGATCCC
91241165 TGCATGGTCACCT
1 TGCATGGTCACCT
91241178 TGCATGGTCACCT
1 TGCATGGTCACCT
91241191 TG
1 TG
91241193 GCTGCTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (13 bp):
TGCATGGTCACCT
Found at i:91242332 original size:21 final size:21
Alignment explanation
Indices: 91242300--91242340 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
91242290 AGGCTCGAGG
91242300 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
91242321 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
91242341 CCAAATGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:91245592 original size:104 final size:105
Alignment explanation
Indices: 91245412--91245679 Score: 441
Period size: 104 Copynumber: 2.6 Consensus size: 105
91245402 TAACCGTTAT
* **
91245412 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
91245477 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
91245516 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
91245581 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* * **
91245621 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGAGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
91245680 TTATATACAA
Statistics
Matches: 153, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.54
105 70 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:91246044 original size:30 final size:30
Alignment explanation
Indices: 91246010--91246070 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91246000 TCCACCACCC
91246010 AACTTTTGAAAAATTACAATTTTGCCCCCA
1 AACTTTTGAAAAATTACAATTTTGCCCCCA
*** * *
91246040 AACTTTTGCGTAATTACACTTTTGTCCCCA
1 AACTTTTGAAAAATTACAATTTTGCCCCCA
91246070 A
1 A
91246071 GCTCGGAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AACTTTTGAAAAATTACAATTTTGCCCCCA
Found at i:91248357 original size:13 final size:13
Alignment explanation
Indices: 91248339--91248363 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91248329 CACGATCCCT
91248339 GCATGGTCACCTC
1 GCATGGTCACCTC
91248352 GCATGGTCACCT
1 GCATGGTCACCT
91248364 TGGCTGCTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.24, T:0.24
Consensus pattern (13 bp):
GCATGGTCACCTC
Found at i:91250831 original size:14 final size:14
Alignment explanation
Indices: 91250790--91250831 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
91250780 TTGTTATTAA
*
91250790 ATTTTAATAAAATT
1 ATTTTAATAAAAAT
*
91250804 ATTTT--TAAATAT
1 ATTTTAATAAAAAT
91250816 ATTTTAATAAAAAT
1 ATTTTAATAAAAAT
91250830 AT
1 AT
91250832 AAATAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 10 0.43
14 13 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTTAATAAAAAT
Found at i:91250838 original size:26 final size:26
Alignment explanation
Indices: 91250790--91250839 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
91250780 TTGTTATTAA
* ***
91250790 ATTTTAATAAAATTATTTTTAAATAT
1 ATTTTAATAAAAATATAAATAAATAT
91250816 ATTTTAATAAAAATATAAATAAAT
1 ATTTTAATAAAAATATAAATAAAT
91250840 TTAATCATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATTTTAATAAAAATATAAATAAATAT
Found at i:91250912 original size:56 final size:58
Alignment explanation
Indices: 91250794--91250922 Score: 156
Period size: 56 Copynumber: 2.3 Consensus size: 58
91250784 TATTAAATTT
* * * * * * *
91250794 TAATAAAATTATTTTTAAATATATTTTAATAAAAATATAAATAAATTTAATCATATTT
1 TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATAAATTTAATAACATTC
*
91250852 TAATATAATT-TTATTAAATACAATTTAAT-AAAATA-ATATATAATTTAATAACATTC
1 TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATA-AATTTAATAACATTC
91250908 TAATATAATTATTAT
1 TAATATAATTATTAT
91250923 ATGAATTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
55 4 0.07
56 28 0.46
57 20 0.33
58 9 0.15
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (58 bp):
TAATATAATTATTATTAAATACAATTTAATAAAAATATAAATAAATTTAATAACATTC
Found at i:91251475 original size:26 final size:26
Alignment explanation
Indices: 91251439--91251491 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
91251429 TAGAAAGAAG
91251439 ATAAATGAATGATTAACAACAATCTA
1 ATAAATGAATGATTAACAACAATCTA
91251465 ATAAATGAATGATTAACAACAATCTA
1 ATAAATGAATGATTAACAACAATCTA
91251491 A
1 A
91251492 CTTTAGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.26
Consensus pattern (26 bp):
ATAAATGAATGATTAACAACAATCTA
Found at i:91254412 original size:2 final size:2
Alignment explanation
Indices: 91254405--91254429 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
91254395 AACAAAAGCA
91254405 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
91254430 GAAAAGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91255570 original size:21 final size:21
Alignment explanation
Indices: 91255546--91255585 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
91255536 GGCAAAAATG
91255546 AAAAAAATAATCTTTTCAGAA
1 AAAAAAATAATCTTTTCAGAA
91255567 AAAAAAATAATCTTTTCAG
1 AAAAAAATAATCTTTTCAG
91255586 CATTCCTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAAAAATAATCTTTTCAGAA
Found at i:91258759 original size:44 final size:44
Alignment explanation
Indices: 91258662--91258773 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 44
91258652 ATACCAGCAA
** * *
91258662 CGAGTAAGACCATGACTGAAAA-ATGTTATGGTATCACGATTCTAT
1 CGAGTAAGACCAT-ACT-AAAAGACATTATGGAATCACGATTATAT
* * *
91258707 TGAATAAGACCATACTAAAAGACATTATGGAATCATGATTATAT
1 CGAGTAAGACCATACTAAAAGACATTATGGAATCACGATTATAT
*
91258751 CGAGTAAGACCATAGCTGAAAGA
1 CGAGTAAGACCATA-CTAAAAGA
91258774 TGCTATGGCA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 4 0.07
44 33 0.60
45 18 0.33
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (44 bp):
CGAGTAAGACCATACTAAAAGACATTATGGAATCACGATTATAT
Found at i:91258810 original size:45 final size:46
Alignment explanation
Indices: 91258619--91258877 Score: 138
Period size: 45 Copynumber: 5.7 Consensus size: 46
91258609 CCAGAGAATA
* *
91258619 AATAAGACCATAGTTGAAAGATACTATGGCA-C-C-ATACCAGCAACG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGA-ATCA-CAACG
* * ** * * * **
91258664 AGTAAGACCAT-GACTGAAAAATGTTATGGTATCACGATTC-TATTG
1 AATAAGACCATAG-CTGAAAGATACTATGGCATCACGAATCACAACG
* * * * * * * *
91258709 AATAAGACCATA-CTAAAAGACATTATGGAATCATG-ATTATATCG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* *
91258753 AGTAAGACCATAGCTGAAAGATGCTATGGCATCACGAATCA-AACG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* * * *** * *
91258798 AATAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATG
1 AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
* * **
91258844 AATAAGACCATGGCTTAAAGGCACTATGGCATCA
1 AATAAGACCATAGCTGAAAGATACTATGGCATCA
91258878 AGACGAGAAT
Statistics
Matches: 161, Mismatches: 44, Indels: 17
0.73 0.20 0.08
Matches are distributed among these distances:
43 1 0.01
44 33 0.20
45 88 0.55
46 36 0.22
47 2 0.01
48 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (46 bp):
AATAAGACCATAGCTGAAAGATACTATGGCATCACGAATCACAACG
Found at i:91258869 original size:46 final size:45
Alignment explanation
Indices: 91258755--91258919 Score: 152
Period size: 45 Copynumber: 3.6 Consensus size: 45
91258745 TTATATCGAG
* ** * * *** *
91258755 TAAGACCATAGCTGAAAGATGCTATGGCATCACGAATCAAACGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACAAGACGAAAATGAA
*
91258800 TAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACAAGAC-GAAAATGAA
* * * * *
91258846 TAAGACCATGGCTT-AAAGGCACTATGGCATCAAGACGAGAATAAA
1 TAAGACCATAG-TTGAAAGACACTATGGCAACAAGACGAAAATGAA
* *
91258891 TAAGACCATTGTTGAAAGACACCATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
91258920 CACTCTGATC
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
44 2 0.02
45 61 0.61
46 35 0.35
47 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCAACAAGACGAAAATGAA
Found at i:91258918 original size:45 final size:46
Alignment explanation
Indices: 91258798--91258919 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
91258788 GAATCAAACG
* *
91258798 AATAAGACCATAGTTGAAAGACACTATGGCAACACGACGGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACAAGACGGAAAATA
* * * *
91258844 AATAAGACCATGGCTT-AAAGGCACTATGGCATCAAGAC-GAGAATA
1 AATAAGACCATAG-TTGAAAGACACTATGGCAACAAGACGGAAAATA
* *
91258889 AATAAGACCATTGTTGAAAGACACCATGGCA
1 AATAAGACCATAGTTGAAAGACACTATGGCA
91258920 CACTCTGATC
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
44 2 0.03
45 30 0.46
46 31 0.48
47 2 0.03
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.17
Consensus pattern (46 bp):
AATAAGACCATAGTTGAAAGACACTATGGCAACAAGACGGAAAATA
Found at i:91260736 original size:15 final size:15
Alignment explanation
Indices: 91260716--91260745 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91260706 CCTATAAATA
*
91260716 TCATCCCTCATCCCT
1 TCATCCATCATCCCT
91260731 TCATCCATCATCCCT
1 TCATCCATCATCCCT
91260746 CATAGCTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (15 bp):
TCATCCATCATCCCT
Found at i:91265652 original size:22 final size:21
Alignment explanation
Indices: 91265623--91265681 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 21
91265613 TGCACTAATG
91265623 AACAGAGAGCACTAAAGTGCT
1 AACAGAGAGCACTAAAGTGCT
*
91265644 ATACAGAGAGCAC-AGATGTGCT
1 A-ACAGAGAGCACTA-AAGTGCT
91265666 AATCAGAGAGCACTAA
1 AA-CAGAGAGCACTAA
91265682 CAGACTAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
21 3 0.09
22 29 0.88
23 1 0.03
ACGTcount: A:0.42, C:0.19, G:0.24, T:0.15
Consensus pattern (21 bp):
AACAGAGAGCACTAAAGTGCT
Found at i:91267198 original size:3 final size:3
Alignment explanation
Indices: 91267190--91267258 Score: 74
Period size: 3 Copynumber: 23.3 Consensus size: 3
91267180 TCTTTAATTT
*
91267190 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATCA AT- ATC ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
91267234 AT- ATAA ATA ATA AT- ATA ATA TATA A
1 ATA AT-A ATA ATA ATA ATA ATA -ATA A
91267259 ATATCTTTTA
Statistics
Matches: 58, Mismatches: 1, Indels: 14
0.79 0.01 0.19
Matches are distributed among these distances:
2 8 0.14
3 43 0.74
4 7 0.12
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:91267417 original size:28 final size:26
Alignment explanation
Indices: 91267386--91267447 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 26
91267376 ATATAATGTC
91267386 TTATTTATAATTAATATAAATTACAATA
1 TTATTTATAA-TAATATAAATTA-AATA
* *
91267414 TTATAATATAATAATATACATTAAATA
1 TTAT-TTATAATAATATAAATTAAATA
*
91267441 ATATTTA
1 TTATTTA
91267448 ATTACAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.07
27 7 0.24
28 15 0.52
29 5 0.17
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (26 bp):
TTATTTATAATAATATAAATTAAATA
Found at i:91268901 original size:4 final size:4
Alignment explanation
Indices: 91268892--91268918 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
91268882 ATGTAACTCT
91268892 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
91268919 TTATTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:91269942 original size:6 final size:6
Alignment explanation
Indices: 91269933--91269991 Score: 68
Period size: 6 Copynumber: 9.7 Consensus size: 6
91269923 AGAAAATAAA
*
91269933 AAAAAT -AAAAT AGAAAAT AAAAA- AAAAAT AACAAAAT ACAAAT AAAAAT
1 AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT -A-AAAAT AAAAAT AAAAAT
91269982 AAAAAT AAAA
1 AAAAAT AAAA
91269992 CTGGGTTGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
5 10 0.22
6 23 0.50
7 8 0.17
8 5 0.11
ACGTcount: A:0.81, C:0.03, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:91269987 original size:26 final size:27
Alignment explanation
Indices: 91269925--91269989 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
91269915 AACATGCAAG
* *
91269925 AAAATAAAAAAAATAAAATAGAAAATA
1 AAAATAAAAATAACAAAATAGAAAATA
*
91269952 AAAA-AAAAATAACAAAATA-CAAATA
1 AAAATAAAAATAACAAAATAGAAAATA
91269977 AAAATAAAAATAA
1 AAAATAAAAATAA
91269990 AACTGGGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.26
26 21 0.62
27 4 0.12
ACGTcount: A:0.82, C:0.03, G:0.02, T:0.14
Consensus pattern (27 bp):
AAAATAAAAATAACAAAATAGAAAATA
Found at i:91274169 original size:48 final size:48
Alignment explanation
Indices: 91273937--91274156 Score: 323
Period size: 48 Copynumber: 4.6 Consensus size: 48
91273927 ATGCCTCATA
* **
91273937 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATAATGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
* * *
91273985 TCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATAAAAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
* * * *
91274033 CCGATGCCATGTCCCAAACATAGTCTTACAGTGGCTCACATAACGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
* *
91274081 CCGATGCCATGTCCCAAACGTGGTCTTACACTGGCTCACATAACAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
*
91274129 CTGATGCCATGTCCCAGACATGGTCTTA
1 CCGATGCCATGTCCCAGACATGGTCTTA
91274157 TATGGGATCA
Statistics
Matches: 153, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 153 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
Found at i:91276136 original size:21 final size:21
Alignment explanation
Indices: 91276112--91276151 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91276102 ATAGATGCCA
91276112 CTGTTCTCTGTTAAAAATCCT
1 CTGTTCTCTGTTAAAAATCCT
* * *
91276133 CTGTTTTCTTTTGAAAATC
1 CTGTTCTCTGTTAAAAATC
91276152 AACAGTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (21 bp):
CTGTTCTCTGTTAAAAATCCT
Found at i:91281995 original size:14 final size:14
Alignment explanation
Indices: 91281973--91282006 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
91281963 AATAGAGAAC
*
91281973 TTTTCATCACTTTT
1 TTTTTATCACTTTT
91281987 TTTTTATCACTTTT
1 TTTTTATCACTTTT
*
91282001 TCTTTA
1 TTTTTA
91282007 GCCTCCGAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATCACTTTT
Found at i:91312568 original size:40 final size:40
Alignment explanation
Indices: 91312485--91312670 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
91312475 TTGAATGATG
* * * *
91312485 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
91312525 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91312565 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91312605 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
91312646 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91312671 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91317275 original size:27 final size:27
Alignment explanation
Indices: 91317244--91317421 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
91317234 TAAATTGTAC
91317244 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91317271 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91317297 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91317325 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91317353 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91317380 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
91317407 AGCATTGAGTGTGCG
1 AGCACTAAGTGTGCG
91317422 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91317358 original size:82 final size:81
Alignment explanation
Indices: 91317245--91317400 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91317235 AAATTGTACA
* *
91317245 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91317309 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91317326 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91317391 TGCGAGTTGA
65 TGCGAATTGA
91317401 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91323972 original size:40 final size:40
Alignment explanation
Indices: 91323875--91324060 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
91323865 TTGAATGATG
* * * *
91323875 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
91323915 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91323955 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
91323995 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
91324036 -CCGGGCTATGTCTCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91324061 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91324067 original size:80 final size:79
Alignment explanation
Indices: 91323929--91324083 Score: 215
Period size: 80 Copynumber: 1.9 Consensus size: 79
91323919 GACTAAGATC
* **
91323929 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTA
91323993 AATCCGGGTTAAGTCT
65 AATCC-GGTTAAGTCT
* *
91324009 CGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCTCGAAGGCATTTGAACGAGTAGCTA
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
*
91324073 TATCCGGTTAA
65 AATCCGGTTAA
91324084 ATTCCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
79 8 0.12
80 57 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAGTCT
Found at i:91334272 original size:37 final size:37
Alignment explanation
Indices: 91334222--91334297 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
91334212 TTATTAAGAA
* * *
91334222 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
91334259 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
91334296 GT
1 GT
91334298 ATTTAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:91334497 original size:47 final size:47
Alignment explanation
Indices: 91334419--91334784 Score: 554
Period size: 47 Copynumber: 7.7 Consensus size: 47
91334409 CCCTTTGGGA
* * * * * *
91334419 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91334466 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91334513 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91334560 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91334607 CTTATCACAGATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91334654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91334701 CTTATCACGTGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
91334750 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
91334785 AGAATCCTAA
Statistics
Matches: 293, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 247 0.84
49 45 0.15
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91338181 original size:40 final size:40
Alignment explanation
Indices: 91338149--91338371 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
91338139 CCAGCATGAT
* * * *
91338149 TGCTCTTCAGG-ACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTC-GGAACTTAGCCCGGATACATCACTAGCACGAA
*** * *
91338189 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
91338229 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
91338269 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * **
91338309 TGCTCTTCGAAACTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAA
* *
91338350 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
91338372 CATCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.01
40 145 0.90
41 8 0.05
42 6 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:91338722 original size:29 final size:29
Alignment explanation
Indices: 91338688--91338759 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
91338678 ATCAACCACG
* *
91338688 CACACTTAGTGCCATGTACTTT-AAACTCA
1 CACACTTAGTGCCATGCA-TTTCAAACCCA
* *
91338717 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCA
91338746 CACACTTAGTGCCA
1 CACACTTAGTGCCA
91338760 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCA
Found at i:91338802 original size:43 final size:43
Alignment explanation
Indices: 91338741--91338843 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
91338731 TGCATTTCAA
91338741 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
91338784 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
91338827 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
91338844 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:91340759 original size:37 final size:37
Alignment explanation
Indices: 91340709--91340784 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
91340699 TTATTACGAA
* * *
91340709 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
91340746 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
91340783 GT
1 GT
91340785 ATTTAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:91340985 original size:47 final size:47
Alignment explanation
Indices: 91340906--91341175 Score: 409
Period size: 47 Copynumber: 5.7 Consensus size: 47
91340896 CCCTTCGGGA
* * * * *
91340906 CTTATCACATTTATACACTTTCACA-TCTATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTC-ATCACATCGGCCATTAGGC
* *
91340953 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91341000 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91341047 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91341094 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
91341141 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
91341176 AGAATCCTAA
Statistics
Matches: 207, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 204 0.99
48 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91351989 original size:13 final size:14
Alignment explanation
Indices: 91351957--91351986 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
91351947 AAAAATTTAG
91351957 AAATTATTTTCTTA
1 AAATTATTTTCTTA
91351971 AAATTATTTTCTTA
1 AAATTATTTTCTTA
91351985 AA
1 AA
91351987 TTAGTACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (14 bp):
AAATTATTTTCTTA
Found at i:91357278 original size:26 final size:26
Alignment explanation
Indices: 91357242--91357292 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
91357232 TCGGATGATG
*
91357242 TTCCTGTCTATTTCTCTTGAAAATAA
1 TTCCTGTCTATTTCTCTCGAAAATAA
91357268 TTCCTGTCTATTTCTCTCGAAAATA
1 TTCCTGTCTATTTCTCTCGAAAATA
91357293 GACTTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.45
Consensus pattern (26 bp):
TTCCTGTCTATTTCTCTCGAAAATAA
Found at i:91358105 original size:49 final size:50
Alignment explanation
Indices: 91358038--91358166 Score: 140
Period size: 50 Copynumber: 2.6 Consensus size: 50
91358028 TCAAGTCGAT
* *
91358038 GCCATGTCCCAGTCATGGTCTTACACTGACTATCA-AAAT-CG-AGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCGTA--CCAAC
* * * * *
91358087 GCCATGTCCTAGACATGGTCTTGCACT-AGCTCTCACATATCCGTACCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATCCGTACCAAC
91358137 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
91358167 ACATCTCAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
48 1 0.02
49 29 0.44
50 32 0.48
51 3 0.05
52 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCGTACCAAC
Found at i:91358235 original size:46 final size:44
Alignment explanation
Indices: 91358139--91358259 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 44
91358129 GTACCAATGC
* * *
91358139 CATGTCCCAGACATGGTCTTACACTGACACATCTCAAAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCACATCTCAAAGCCGATA
* *
91358184 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGC--ACATCTCAAAGCCGATA
* * * *
91358230 CATGTCCGAGCCATGCCTTACATTGGCACA
1 CATGTCCCAGACATGTCTTACACTGGCACA
91358260 CAAATAACCT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
44 15 0.23
45 14 0.22
46 36 0.55
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.25
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCACATCTCAAAGCCGATA
Found at i:91374606 original size:55 final size:55
Alignment explanation
Indices: 91374483--91374663 Score: 272
Period size: 55 Copynumber: 3.3 Consensus size: 55
91374473 CATGAGATTG
* * * *
91374483 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTT-ATTATATA
* *
91374540 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCAAGTTTATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTATTATATA
*
91374595 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTATTATATA
*
91374650 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
91374664 GACTTAATAT
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
55 72 0.63
56 24 0.21
57 18 0.16
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.34
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTATTATATA
Found at i:91374624 original size:83 final size:82
Alignment explanation
Indices: 91374511--91374662 Score: 286
Period size: 83 Copynumber: 1.8 Consensus size: 82
91374501 TAAATTGTAC
91374511 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCACTAAG
91374576 TGTGCAAGTTTATTATGT
65 TGTGCAAGTTTATTATGT
*
91374594 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCACTAAGT
91374659 GTGC
66 GTGC
91374663 GGACTTAATA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
82 23 0.34
83 45 0.66
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCACTAAGT
GTGCAAGTTTATTATGT
Found at i:91374676 original size:27 final size:28
Alignment explanation
Indices: 91374483--91374663 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
91374473 CATGAGATTG
* * * *
91374483 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
91374512 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
91374540 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
91374568 GCACTAAGTGTGCAAGTTT-ATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
91374595 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
91374623 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
91374650 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
91374664 GACTTAATAT
Statistics
Matches: 142, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
27 49 0.35
28 75 0.53
29 18 0.13
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:91392524 original size:38 final size:38
Alignment explanation
Indices: 91392481--91392557 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
91392471 CTAATTATGT
91392481 TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
1 TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
91392519 TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
1 TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
91392557 T
1 T
91392558 CCACAACCCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (38 bp):
TAAAACAAGTTGAATAACACTTTAAAACCAAGTTTTAA
Found at i:91421240 original size:27 final size:27
Alignment explanation
Indices: 91421199--91421252 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
91421189 TGTCATGTGA
* *
91421199 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
91421226 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
91421253 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:91421620 original size:50 final size:49
Alignment explanation
Indices: 91421499--91421681 Score: 172
Period size: 50 Copynumber: 3.7 Consensus size: 49
91421489 TCTATTGTGA
* * *
91421499 GGTCATGTGTGTAGTAGTAAGTGCAGGCTACT--ATGCATACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGATAA-TT
** * * * **
91421549 CAATCACGTGTGTAGTGCTAAGTGCAGGCTAGTACATGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* *
91421599 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
***
91421649 GGTCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
91421682 TGCATACCAG
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 30 0.28
50 42 0.39
51 32 0.30
53 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
Found at i:91421695 original size:49 final size:50
Alignment explanation
Indices: 91421498--91421695 Score: 188
Period size: 49 Copynumber: 4.0 Consensus size: 50
91421488 ATCTATTGTG
* * *
91421498 AGGTCATGTGTGTAGTAGTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA-TT
* * * * **
91421549 CA-ATCACGTGTGTAGTGCTAAGTGCAGGCTAGTA--CATGTATCAGATGGTT
1 -AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCA--TACCAGATAATT
* ** *
91421599 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATT
***
91421649 -GGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
91421696 CCTTGTCTAC
Statistics
Matches: 116, Mismatches: 25, Indels: 13
0.75 0.16 0.08
Matches are distributed among these distances:
49 43 0.37
50 39 0.34
51 33 0.28
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATT
Found at i:91425986 original size:21 final size:21
Alignment explanation
Indices: 91425962--91426021 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
91425952 CCAATTCAAG
91425962 CATTCAATCATTTAAACCAAC
1 CATTCAATCATTTAAACCAAC
* * *
91425983 CATTCCATAATTTACCATCCAAC
1 CATTCAATCATTTA--AACCAAC
*
91426006 TATTCAA-CATTTAAAC
1 CATTCAATCATTTAAAC
91426022 ATATTCAACT
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
20 2 0.07
21 12 0.40
22 5 0.17
23 11 0.37
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (21 bp):
CATTCAATCATTTAAACCAAC
Found at i:91432262 original size:20 final size:19
Alignment explanation
Indices: 91432233--91432299 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 19
91432223 GAACTACTCT
91432233 ATTT-CTTACTTATCATTCC
1 ATTTACTTACTT-TCATTCC
**
91432252 ATTTACTTACTTTTCATTTT
1 ATTTACTTAC-TTTCATTCC
91432272 ATTTACTTACTTTCCATTCC
1 ATTTACTTACTTT-CATTCC
91432292 ATTTACTT
1 ATTTACTT
91432300 GGCATAAGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 7 0.17
20 32 0.78
21 2 0.05
ACGTcount: A:0.21, C:0.22, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTACTTACTTTCATTCC
Found at i:91434777 original size:80 final size:79
Alignment explanation
Indices: 91434693--91434864 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 79
91434683 GGACTAAGAT
*
91434693 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGATTAAGCCCCAAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGATTAAGCCCCAAAGG-CATTGTGCGAGATACT
* *
91434757 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * * * *
91434773 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGATTAAGCCCCAAAGGCATTGTGCGAGATACTAA
*
91434838 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
91434852 CCGAAGGCATTTG
1 CCGAAGGCATTTG
91434865 AACGAGGAGC
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 38 0.49
80 36 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGATTAAGCCCCAAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:91434844 original size:39 final size:39
Alignment explanation
Indices: 91434693--91434862 Score: 189
Period size: 40 Copynumber: 4.3 Consensus size: 39
91434683 GGACTAAGAT
* * * *
91434693 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGATTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * * *
91434733 CCAAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
91434773 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
91434813 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
91434852 CCGAAGGCATT
1 CCGAAGGCATT
91434863 TGAACGAGGA
Statistics
Matches: 114, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 38 0.33
40 72 0.63
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:91442696 original size:40 final size:40
Alignment explanation
Indices: 91442572--91442795 Score: 217
Period size: 40 Copynumber: 5.7 Consensus size: 40
91442562 TTGAATGCTG
* * * *
91442572 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
91442612 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
91442650 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
91442691 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
91442731 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
91442770 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
91442796 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 59 0.37
40 85 0.54
41 12 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:91442708 original size:79 final size:79
Alignment explanation
Indices: 91442625--91442795 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
91442615 GGACTAAGAT
*
91442625 CCGAAGGCATTTGTGC-AGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
91442688 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
91442704 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
91442769 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
91442783 CCGAAGGCATTTG
1 CCGAAGGCATTTG
91442796 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 53 0.68
80 22 0.28
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:91442813 original size:79 final size:80
Alignment explanation
Indices: 91442651--91442828 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
91442641 AGATACAAAT
* * * *
91442651 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
91442716 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
91442731 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
91442795 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
91442810 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
91442829 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:91451052 original size:51 final size:50
Alignment explanation
Indices: 91450977--91451164 Score: 224
Period size: 49 Copynumber: 3.8 Consensus size: 50
91450967 CTAGGTCGCA
* *
91450977 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATAA-TT-GGTCACG
* * *
91451028 TGTATAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATAATTAGGTTACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATAATT-GGTCACG
* * * *
91451078 TGTGTAGTACTAAGTGCA-GCTACTACGTGTAC-CGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATAATTGGTCACG
*
91451126 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATA
91451165 GTTTGGCTAC
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
48 22 0.18
49 38 0.32
50 26 0.22
51 34 0.28
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAGATAATTGGTCACG
Found at i:91451159 original size:49 final size:50
Alignment explanation
Indices: 91450968--91451164 Score: 229
Period size: 51 Copynumber: 4.0 Consensus size: 50
91450958 TATATGTAGC
* *
91450968 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAGATAA-T
* * * * * *
91451019 TCGATCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
* * * *
91451069 TAGGTTACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
* *
91451118 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
91451165 GTTTGGCTAC
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
48 22 0.18
49 38 0.31
50 25 0.20
51 39 0.31
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
Found at i:91451163 original size:98 final size:101
Alignment explanation
Indices: 91450977--91451164 Score: 258
Period size: 98 Copynumber: 1.9 Consensus size: 101
91450967 CTAGGTCGCA
* *
91450977 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTCGATCACGTGTATAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTTCGATCACATGTATAGTACTAAG
* *
91451042 TGCAGGCTACTACGTGTATCAGATAATTAGGTTACG
66 TGCAGGCTACTACGCGTACCAGATAATTAGGTTACG
* * * *
91451078 TGTGTAGTACTAAGTGCA-GCTACTACGTGTAC-CGGATAA-TT-GGTCGCATGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC-GATAACTTCGATCACATGTATAGTACTAA
*
91451139 GTGCAGGCTACTATGCGTACCAGATA
65 GTGCAGGCTACTACGCGTACCAGATA
91451165 GTTTGGCTAC
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
98 39 0.51
99 3 0.04
100 17 0.22
101 18 0.23
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTTCGATCACATGTATAGTACTAAG
TGCAGGCTACTACGCGTACCAGATAATTAGGTTACG
Found at i:91453062 original size:13 final size:13
Alignment explanation
Indices: 91453044--91453068 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91453034 TCGGTAGGGG
91453044 CACGCCCGTGTGA
1 CACGCCCGTGTGA
91453057 CACGCCCGTGTG
1 CACGCCCGTGTG
91453069 CGATTACTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGA
Found at i:91477026 original size:28 final size:30
Alignment explanation
Indices: 91476994--91477050 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
91476984 AAACATTTCA
*
91476994 CATA-TTCCTCATTCATTTG-CACATATAG
1 CATATTTCCTCATACATTTGTCACATATAG
* *
91477022 CATATTTTCTCATACTTTTGTCACATATA
1 CATATTTCCTCATACATTTGTCACATATA
91477051 ATCACTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 12 0.50
30 8 0.33
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (30 bp):
CATATTTCCTCATACATTTGTCACATATAG
Found at i:91477287 original size:43 final size:42
Alignment explanation
Indices: 91477229--91477378 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 42
91477219 CAATGCCAAC
* *
91477229 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATG-CCACT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATA-CGATGTCCA-T
* *
91477272 GTCCTAGACAG-GGTCTTACACGAAATCAAATACGATGTCGAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATACGATGTCCAT
* *
91477314 GTCCCAGACGTGGTCTTACACATAAATCATAAGT-CGATG-CCAAC
1 GTCCCAGACGTGGTCTTACAC-GAAATCA-AA-TACGATGTCC-AT
* *
91477358 ATCGCAGACGTGGTCTTACAC
1 GTCCCAGACGTGGTCTTACAC
91477379 AAAAACACAT
Statistics
Matches: 90, Mismatches: 10, Indels: 13
0.80 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 24 0.27
43 36 0.40
44 28 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATACGATGTCCAT
Found at i:91486148 original size:27 final size:26
Alignment explanation
Indices: 91486100--91486159 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
91486090 GCGAGGCTAC
*
91486100 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
91486127 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
91486153 CAGATAT
1 CAGATAT
91486160 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:91486458 original size:27 final size:27
Alignment explanation
Indices: 91486428--91486866 Score: 426
Period size: 27 Copynumber: 16.3 Consensus size: 27
91486418 GGTAAAATGG
* * *
91486428 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTTTACCCTACAGGGGTATTTCGA
*
91486455 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTTTACCCTACAGGGGTATTTCGA
* * *
91486481 GTAATTCTACCCTATAGGGGTATTTCGG
1 -TAATTTTACCCTACAGGGGTATTTCGA
* * *
91486509 T-ATTTCTACCTTACAAGGGTATTTCGG
1 TAATTT-TACCCTACAGGGGTATTTCGA
* *
91486536 TAATTCTACCCTACAGGGGTATTT-TA
1 TAATTTTACCCTACAGGGGTATTTCGA
*
91486562 GTAATTCTACCCTACAGGGGTATTTCGA
1 -TAATTTTACCCTACAGGGGTATTTCGA
* *
91486590 TATTTTTACCCTATAGGGGTATTTC-A
1 TAATTTTACCCTACAGGGGTATTTCGA
* * * *
91486616 GTATTTTTATCCTATAGGGGTATTTCGG
1 -TAATTTTACCCTACAGGGGTATTTCGA
* *
91486644 T-ATTTCTACCCTACAAGGGTATTTCGG
1 TAATTT-TACCCTACAGGGGTATTTCGA
* *
91486671 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAGGGGTATTTCGA
*
91486698 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTTTACCCTACAGGGGTATTTCGA
* * *
91486725 TAATTCTACCCTATAAGGGTATTTCGA
1 TAATTTTACCCTACAGGGGTATTTCGA
*
91486752 T-ATTTCTACCCTACAAGGGTATTTCGA
1 TAATTT-TACCCTACAGGGGTATTTCGA
* * *
91486779 T-ATTTCTACCCTACAAGGGTATTTTGG
1 TAATTT-TACCCTACAGGGGTATTTCGA
* *
91486806 T-ATTTCTACCCTACAAGGGTATTTCGG
1 TAATTT-TACCCTACAGGGGTATTTCGA
* * *
91486833 TAATTCTACTCTACAGGGGTATTTCAA
1 TAATTTTACCCTACAGGGGTATTTCGA
91486860 TAATTTT
1 TAATTTT
91486867 GTAAATCGAA
Statistics
Matches: 359, Mismatches: 41, Indels: 24
0.85 0.10 0.06
Matches are distributed among these distances:
26 11 0.03
27 338 0.94
28 10 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTTTACCCTACAGGGGTATTTCGA
Found at i:91486473 original size:54 final size:54
Alignment explanation
Indices: 91486426--91486866 Score: 496
Period size: 54 Copynumber: 8.2 Consensus size: 54
91486416 GGGGTAAAAT
* *
91486426 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * * * * * *
91486480 AGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * *
91486534 GGTAATTCTACCCTACAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTC
* * * * * * * *
91486588 GATATTTTTACCCTATAGGGGTATTTC-AGTATTTTTATCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTC
*
91486642 GGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * *
91486696 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * *
91486750 GAT-ATTTCTACCCTACAAGGGTATTTCGATATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* *
91486804 GGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
**
91486858 AATAATTTT
1 GGTAATTTT
91486867 GTAAATCGAA
Statistics
Matches: 327, Mismatches: 53, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
53 6 0.02
54 314 0.96
55 7 0.02
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:91486549 original size:81 final size:81
Alignment explanation
Indices: 91486430--91486857 Score: 545
Period size: 81 Copynumber: 5.3 Consensus size: 81
91486420 TAAAATGGTA
* * *
91486430 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* *
91486494 ATAGGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* *
91486510 ATTTCTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* *
91486575 ACAGGGGTATTTCGAT
66 ACAAGGGTATTTCGGT
* * * * * * * * * *
91486591 ATTTTTACCCTATAGGGGTATTTCAGTATTTTTATCCTATAGGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
91486656 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* *
91486672 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-GATAATTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCC
* *
91486736 TATAAGGGTATTTCGAT
65 TACAAGGGTATTTCGGT
* * * ** *
91486753 ATTTCTACCCTACAAGGGTATTTCGATATTTCTACCCTACAAGGGTATTTTGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
91486818 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * *
91486834 AATTCTACTCTACAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
91486858 AATAATTTTG
Statistics
Matches: 301, Mismatches: 44, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
80 5 0.02
81 295 0.98
82 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:91486880 original size:27 final size:27
Alignment explanation
Indices: 91486850--91486972 Score: 97
Period size: 27 Copynumber: 4.6 Consensus size: 27
91486840 ACTCTACAGG
* **
91486850 GGTATTTCAATAATTTTGTAAATCGAA
1 GGTATTTCAGTAATTTTACAAATCGAA
*** * *
91486877 GGTAAAACAGTAATTCTATAAATC-AA
1 GGTATTTCAGTAATTTTACAAATCGAA
* * *
91486903 GGGTACTTT-GGTAATTTTACAAGTCGAG
1 -GGTA-TTTCAGTAATTTTACAAATCGAA
* *
91486931 GGTATTTCAATAATTTTACAAGTCGAA
1 GGTATTTCAGTAATTTTACAAATCGAA
91486958 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
91486973 CATAAATCAG
Statistics
Matches: 74, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
26 5 0.07
27 68 0.92
28 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATCGAA
Found at i:91486904 original size:81 final size:79
Alignment explanation
Indices: 91486819--91487031 Score: 209
Period size: 81 Copynumber: 2.7 Consensus size: 79
91486809 TTCTACCCTA
* **
91486819 CAAGGGTATTTCGGTAATTCTAC-TCTAC-AGGGGTATTTCAATAATTTTGTAAATCGAAGGTAA
1 CAAGGGTATTT-GGTAATTCTACAACT-CGA-GGGTATTTCAATAATTTTACAAATCGAAGGTAA
91486882 AACAGTAATTCTATAAAT
63 AACAGTAATTC-ATAAAT
* * * ***
91486900 CAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAGTCGAAGGTATTT
1 CAAGGGTA-TTTGGTAATTCTACAACTCGAGGGTATTTCAATAATTTTACAAATCGAAGGTAAAA
91486965 CAGTAATTCATAAAT
65 CAGTAATTCATAAAT
* * * **
91486980 CAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGAT-ATTTTACAAA
1 CAAGGGTA-TTTGGTAATTCTAC-AACTCGAGGGTATTTCAATAATTTTACAAA
91487032 CCAGGGGTTT
Statistics
Matches: 112, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
79 9 0.08
80 37 0.33
81 61 0.54
82 5 0.04
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.37
Consensus pattern (79 bp):
CAAGGGTATTTGGTAATTCTACAACTCGAGGGTATTTCAATAATTTTACAAATCGAAGGTAAAAC
AGTAATTCATAAAT
Found at i:91487016 original size:27 final size:27
Alignment explanation
Indices: 91486981--91487222 Score: 290
Period size: 27 Copynumber: 9.0 Consensus size: 27
91486971 TTCATAAATC
91486981 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
91487008 AGGGGTATTTTGAT-ATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
91487034 AGGGGTTTTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
91487061 AGAGGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
91487088 A-GGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
** * * *
91487114 AGATGTATTTTGGTGATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
91487141 AAGGGTATTCTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
**
91487168 AGGGGTATTTTGGTAATTTTGTAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
91487195 AAGGGTATTTTGGTAATTTCATAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
91487222 A
1 A
91487223 AAGTATTCTA
Statistics
Matches: 182, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 47 0.26
27 135 0.74
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:91487165 original size:54 final size:54
Alignment explanation
Indices: 91486974--91487222 Score: 313
Period size: 53 Copynumber: 4.6 Consensus size: 54
91486964 TCAGTAATTC
* * *
91486974 ATAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGAT-ATTTT
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
* * *
91487027 ACAAACCAGGGGTTTTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
* * * * *
91487081 ACAAACC-AGGGTATTTTGGTAATTTTACAAACCAGATGTATTTTGGTGATTTT
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
* * * *
91487134 ATAAACCAAGGGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTT
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
* * * *
91487188 GTAAACTAAGGGTATTTTGGTAATTTCATAAACTA
1 ATAAACCAAGGGTATTTTGGTAATTTTACAAACTA
91487223 AAGTATTCTA
Statistics
Matches: 171, Mismatches: 23, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
53 90 0.53
54 81 0.47
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
ATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTT
Found at i:91489691 original size:28 final size:28
Alignment explanation
Indices: 91489659--91489723 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
91489649 ATTTACTAGA
* *
91489659 ATACCCCTATGTATGCCAAATTACCGTT
1 ATACCCCTATGTATGCAAAATGACCGTT
* *
91489687 ATACCCTTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCGTT
91489715 ATACCCCTA
1 ATACCCCTA
91489724 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCGTT
Found at i:91489859 original size:23 final size:23
Alignment explanation
Indices: 91489829--91489887 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 23
91489819 AGGAAGCGTC
91489829 CTGGTGGCCACAAATTATCTGTT
1 CTGGTGGCCACAAATTATCTGTT
91489852 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGT-G----GCCACAAATTATCTGTT
91489880 CTGGTGGC
1 CTGGTGGC
91489888 ACTGCCACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
23 7 0.23
24 1 0.03
27 1 0.03
28 22 0.71
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.32
Consensus pattern (23 bp):
CTGGTGGCCACAAATTATCTGTT
Found at i:91489925 original size:29 final size:28
Alignment explanation
Indices: 91489835--91489914 Score: 133
Period size: 28 Copynumber: 2.8 Consensus size: 28
91489825 CGTCCTGGTG
*
91489835 GCCACAAATTATCTGTTCTGGTGGCCCT
1 GCCACAAATTATCTGTTCTGGTGGCACT
91489863 GCCACAAATTATCTGTTCTGGTGGCACT
1 GCCACAAATTATCTGTTCTGGTGGCACT
*
91489891 GCCACAAAATATCTGTATCTGGTG
1 GCCACAAATTATCTGT-TCTGGTG
91489915 ACTCTGTCAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
28 42 0.86
29 7 0.14
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (28 bp):
GCCACAAATTATCTGTTCTGGTGGCACT
Found at i:91491031 original size:11 final size:10
Alignment explanation
Indices: 91491003--91491036 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
91490993 AGCCTGTAAG
91491003 TATTCTGAAT
1 TATTCTGAAT
*
91491013 TTTTCTGAAT
1 TATTCTGAAT
91491023 ATATTCTGAAT
1 -TATTCTGAAT
91491034 TAT
1 TAT
91491037 CTGTCTATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:91497601 original size:28 final size:28
Alignment explanation
Indices: 91497539--91497603 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
91497529 ACTTACTAGA
* *
91497539 ATACCCATATGTATGAAAAATTACCATT
1 ATACCCCTATGTATGAAAAATGACCATT
* *
91497567 ATACCCCTATGTGTGCAAAATGACC-TCT
1 ATACCCCTATGTATGAAAAATGACCAT-T
91497595 ATACCCCTA
1 ATACCCCTA
91497604 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATGACCATT
Found at i:91497740 original size:28 final size:26
Alignment explanation
Indices: 91497709--91497798 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 26
91497699 AGGAAGTGTC
*
91497709 CTGGTGGTTATGCCACAAACTATCTGTT
1 CTGGTGG-CATGCCACAAA-TATCTGTT
* **
91497737 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGG-CATGCCACAAATATCTGTT
91497764 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCA-TGCCAC-AAATATCTGT-T
91497793 CTGGTG
1 CTGGTG
91497799 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.02
27 21 0.41
28 22 0.43
29 7 0.14
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (26 bp):
CTGGTGGCATGCCACAAATATCTGTT
Found at i:91497767 original size:27 final size:28
Alignment explanation
Indices: 91497719--91497798 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
91497709 CTGGTGGTTA
* *
91497719 TGCCACAAACTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
**
91497747 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
91497774 TGCCACAAAATATCTGTATCTGGTG
1 TGCCACAAAATATCTGT-TCTGGTG
91497799 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.52
28 14 0.32
29 7 0.16
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGCAC
Found at i:91497809 original size:29 final size:28
Alignment explanation
Indices: 91497719--91497809 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
91497709 CTGGTGGTTA
* * *
91497719 TGCCACAAACTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
91497747 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
91497774 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
91497803 TGTCACA
1 TGCCACA
91497810 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:91497817 original size:55 final size:56
Alignment explanation
Indices: 91497719--91497823 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
91497709 CTGGTGGTTA
* * *
91497719 TGCCACAAACTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * *
91497774 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
91497824 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 22 0.52
56 20 0.48
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:91499370 original size:24 final size:24
Alignment explanation
Indices: 91499343--91499394 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
91499333 TGAATGAAAG
*
91499343 AAAAGGGAATTTTTGGGGAAAATT
1 AAAAGGGAATTTTTGGGAAAAATT
91499367 AAAAGGGAATTTTTGGGAAAAATT
1 AAAAGGGAATTTTTGGGAAAAATT
91499391 AAAA
1 AAAA
91499395 TTAAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.25, T:0.27
Consensus pattern (24 bp):
AAAAGGGAATTTTTGGGAAAAATT
Found at i:91501087 original size:24 final size:24
Alignment explanation
Indices: 91501060--91501123 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
91501050 TATCTATGAC
91501060 GCCTTTGTAGCGTATTTTGTAAGT
1 GCCTTTGTAGCGTATTTTGTAAGT
* * *
91501084 GCCTTTTTAGCATATTTTGTACGT
1 GCCTTTGTAGCGTATTTTGTAAGT
*
91501108 GCCTTTGTGGCGTATT
1 GCCTTTGTAGCGTATT
91501124 CAAGATTAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.47
Consensus pattern (24 bp):
GCCTTTGTAGCGTATTTTGTAAGT
Found at i:91505168 original size:93 final size:93
Alignment explanation
Indices: 91505009--91505180 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
91504999 GCCCATAAGT
* *
91505009 GAACTCGGACTCAAATCAATGAGCTCGAGCGTTCACATCCATAAGCGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGAGCATTCACATCCATAAGCGAACTCGGACTCAACTCAA
*
91505074 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGAATGCCTAGTTATATCTCTC
* * * *
91505102 GAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAAATCAACGAGCTCGAG-CATTCACATCCATAAGCGAACTCGGACTCAACTCA
*
91505166 ACGAGTTCGAATGCC
65 ACGAGCTCGAATGCC
91505181 CAAATATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGAGCATTCACATCCATAAGCGAACTCGGACTCAACTCAA
CGAGCTCGAATGCCTAGTTATATCTCTC
Done.