Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 283 of 316
Found at i:93742905 original size:3 final size:3
Alignment explanation
Indices: 93742897--93742927 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
93742887 TTTACTTAGG
93742897 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
93742928 TTTGTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:93744771 original size:26 final size:26
Alignment explanation
Indices: 93744742--93744849 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
93744732 TGGTACAAAT
*
93744742 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
* *
93744768 TGATAATGGATTAGATAAATATTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
93744794 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
* * *
93744820 TGATAATGGTTTAGGTAAAAGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
93744846 TGAT
1 TGAT
93744850 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGATAAATGTTCCA
Found at i:93751821 original size:25 final size:25
Alignment explanation
Indices: 93751780--93751882 Score: 183
Period size: 25 Copynumber: 4.2 Consensus size: 25
93751770 TGGTACAAAT
93751780 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
93751806 TGATAATGGTTAGGTAAAT-TT-CA
1 TGATAATGGTTAGGTAAATGTTCCA
93751829 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
93751854 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
93751879 TGAT
1 TGAT
93751883 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
23 21 0.28
24 4 0.05
25 43 0.57
26 7 0.09
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:93751844 original size:48 final size:51
Alignment explanation
Indices: 93751780--93751882 Score: 185
Period size: 48 Copynumber: 2.1 Consensus size: 51
93751770 TGGTACAAAT
93751780 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAAT-TT-CA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
93751829 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
93751879 TGAT
1 TGAT
93751883 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
48 37 0.71
49 9 0.17
50 6 0.12
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
Found at i:93765022 original size:19 final size:19
Alignment explanation
Indices: 93764986--93765024 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
93764976 TTTTCATCAT
* *
93764986 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
93765005 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
93765024 A
1 A
93765025 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:93765511 original size:27 final size:27
Alignment explanation
Indices: 93765429--93765542 Score: 99
Period size: 27 Copynumber: 4.1 Consensus size: 27
93765419 AGCATGGCTG
* * *
93765429 CCAGATACAGA-AAATGTGACAGAGTCA
1 CCAGA-ACAGATATATGTGGCAGAGCCA
* *
93765456 CCAGATACAGATATTTTGTGGC-GCTGCCA
1 CCAGA-ACAGATA-TATGTGGCAG-AGCCA
*
93765485 CCAGAACAGATATATGTGGCAGGGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
*
93765512 CCAGAACAGATA-ATTGTGGCATAGCCA
1 CCAGAACAGATATA-TGTGGCAGAGCCA
93765539 CCAG
1 CCAG
93765543 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
26 1 0.01
27 49 0.67
28 10 0.14
29 13 0.18
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:93765691 original size:27 final size:28
Alignment explanation
Indices: 93765645--93765711 Score: 109
Period size: 27 Copynumber: 2.4 Consensus size: 28
93765635 AAATTAACCC
* *
93765645 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
93765673 TA-GGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
93765700 TAGGGGTATAAT
1 TAGGGGTATAAT
93765712 AGTACATCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 25 0.69
28 11 0.31
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:93772304 original size:57 final size:57
Alignment explanation
Indices: 93772235--93772350 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
93772225 TGCTGACGCA
*
93772235 TCGAATCCTTAGGCTCCCACGTGGCCTCATCAGTACTATGATTTCACCATAGCACCT
1 TCGAATCCTTAGGCTCCCACATGGCCTCATCAGTACTATGATTTCACCATAGCACCT
93772292 TCGAATCCTTAGGCTCCCACATGGCCTCATCAGTACTATGATTTCACCATAGCACCT
1 TCGAATCCTTAGGCTCCCACATGGCCTCATCAGTACTATGATTTCACCATAGCACCT
93772349 TC
1 TC
93772351 ACTAAAAGGA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (57 bp):
TCGAATCCTTAGGCTCCCACATGGCCTCATCAGTACTATGATTTCACCATAGCACCT
Found at i:93780049 original size:24 final size:24
Alignment explanation
Indices: 93779980--93780059 Score: 81
Period size: 23 Copynumber: 3.3 Consensus size: 24
93779970 TAGCTCCTCC
* *
93779980 TGAGCTGATGAATAGTAAGCTCTAT
1 TGAGCTGA-AAATAGTAAGCTCTAA
**
93780005 TGAGCTG-AAACGGTAAGCTCTAA
1 TGAGCTGAAAATAGTAAGCTCTAA
* *
93780028 TGAGCTGAAAATAGTAAACTCTTA
1 TGAGCTGAAAATAGTAAGCTCTAA
*
93780052 CGAGCTGA
1 TGAGCTGA
93780060 TATATCGGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
23 19 0.42
24 19 0.42
25 7 0.16
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (24 bp):
TGAGCTGAAAATAGTAAGCTCTAA
Found at i:93780057 original size:47 final size:51
Alignment explanation
Indices: 93779980--93780074 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 51
93779970 TAGCTCCTCC
* * *
93779980 TGAGCTGATGAATAGTAAGCTCTATTGAGCTGA-A-A-CGGTAAGCTCTAA
1 TGAGCTGATAAATAGTAAACTCTATCGAGCTGATATATCGGTAAGCTCTAA
93780028 TGAGCTGA-AAATAGTAAACTCT-TACGAGCTGATATATCGGTAAGCTC
1 TGAGCTGATAAATAGTAAACTCTAT-CGAGCTGATATATCGGTAAGCTC
93780075 ATACAAGATG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
46 1 0.03
47 19 0.47
48 9 0.22
49 1 0.03
50 10 0.25
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (51 bp):
TGAGCTGATAAATAGTAAACTCTATCGAGCTGATATATCGGTAAGCTCTAA
Found at i:93785815 original size:20 final size:20
Alignment explanation
Indices: 93785787--93785839 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
93785777 ATTCATTTCT
* *
93785787 ATTCGTATAAACTGTAGTTC
1 ATTCATATAAACAGTAGTTC
*
93785807 ATTCATATAACCAGTAGTTC
1 ATTCATATAAACAGTAGTTC
*
93785827 ATCCATATAAACA
1 ATTCATATAAACA
93785840 CCTATCTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (20 bp):
ATTCATATAAACAGTAGTTC
Found at i:93786024 original size:25 final size:23
Alignment explanation
Indices: 93786006--93786108 Score: 97
Period size: 23 Copynumber: 4.6 Consensus size: 23
93785996 TGAGCTGATG
93786006 AACAGTAAGCTCTATTGAGCTAA
1 AACAGTAAGCTCTATTGAGCTAA
**
93786029 AACAGTAAGCTCTATCAAGCT-A
1 AACAGTAAGCTCTATTGAGCTAA
93786051 AACAGTAAGCTC-ATATGAGC--A
1 AACAGTAAGCTCTAT-TGAGCTAA
** * * *
93786072 AATGGTAAGCACCAATGAGCTGAA
1 AACAGTAAGCTCTATTGAGCT-AA
93786096 AACAGTAAGCTCT
1 AACAGTAAGCTCT
93786109 TACGAGCTGA
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
21 17 0.27
22 17 0.27
23 19 0.30
24 10 0.16
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.21
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTAA
Found at i:93789874 original size:16 final size:17
Alignment explanation
Indices: 93789853--93789887 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
93789843 TAATGTCTAG
93789853 GAAAATTA-TTAATTGA
1 GAAAATTACTTAATTGA
93789869 GAAAATTATCTTAATTGA
1 GAAAATTA-CTTAATTGA
93789887 G
1 G
93789888 GGGTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (17 bp):
GAAAATTACTTAATTGA
Found at i:93791056 original size:31 final size:31
Alignment explanation
Indices: 93791018--93791076 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
93791008 ATGATAAGTA
93791018 AAAAGTGGTAGCTTCGGCTACCTAATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTAATCAGTG
93791049 AAAAGTGGTAGCTTCGGCTACCTAATCA
1 AAAAGTGGTAGCTTCGGCTACCTAATCA
93791077 TCGGCTACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTAATCAGTG
Found at i:93791098 original size:46 final size:46
Alignment explanation
Indices: 93791031--93791122 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
93791021 AGTGGTAGCT
* * *
93791031 TCGGCTACCTAATCAGTGAAAAGTGGTAGCTTCGGCTACCTAATCA
1 TCGGCTACCTAATCAGTGAAAAATGGTAACTCCGGCTACCTAATCA
* * *
93791077 TCGGCTACTTGATCAGTGAAAAATGGTAACTCCGGCTACCTGATCA
1 TCGGCTACCTAATCAGTGAAAAATGGTAACTCCGGCTACCTAATCA
93791123 GTGAATAGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (46 bp):
TCGGCTACCTAATCAGTGAAAAATGGTAACTCCGGCTACCTAATCA
Found at i:93791121 original size:31 final size:31
Alignment explanation
Indices: 93791078--93791146 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
93791068 ACCTAATCAT
*
93791078 CGGCTACTTGATCAGTGAAAAATGGTAACTC
1 CGGCTACCTGATCAGTGAAAAATGGTAACTC
* * * *
93791109 CGGCTACCTGATCAGTGAATAGTGGTAGCTT
1 CGGCTACCTGATCAGTGAAAAATGGTAACTC
93791140 CGGCTAC
1 CGGCTAC
93791147 AAGTGACAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGGTAACTC
Found at i:93792593 original size:26 final size:26
Alignment explanation
Indices: 93792564--93792672 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
93792554 TGATACAAAT
93792564 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93792590 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
93792616 TGATAATGGGATAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93792642 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93792668 TGATA
1 TGATA
93792673 GGATTTCATG
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93794237 original size:19 final size:22
Alignment explanation
Indices: 93794195--93794234 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
93794185 CATGTTTGAC
*
93794195 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATATACTGCATGCCA
93794217 TGTTGTTATAT-CTG-ATGC
1 TGTTGTTATATACTGCATGC
93794235 ATGGGACTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 3 0.18
22 10 0.59
ACGTcount: A:0.17, C:0.15, G:0.20, T:0.47
Consensus pattern (22 bp):
TGTTGTTATATACTGCATGCCA
Found at i:93799583 original size:26 final size:26
Alignment explanation
Indices: 93799554--93799661 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
93799544 TGGTACAAAT
*
93799554 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
93799580 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
93799606 TGATAATGGCTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
93799632 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
93799658 TGAT
1 TGAT
93799662 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:93807690 original size:39 final size:39
Alignment explanation
Indices: 93807636--93807719 Score: 116
Period size: 39 Copynumber: 2.2 Consensus size: 39
93807626 AAGAGAAGGC
93807636 TATAAATATGTTTAATCCATAACCCCTTCCT-AACCTTTA
1 TATAAATATGTTTAATCCATAA-CCCTTCCTCAACCTTTA
* * *
93807675 TATAAATATGTTTAATTCGTAACTCTTCCTCAACCTTTA
1 TATAAATATGTTTAATCCATAACCCTTCCTCAACCTTTA
*
93807714 AATAAA
1 TATAAA
93807720 AGAATAATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 7 0.17
39 33 0.82
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.39
Consensus pattern (39 bp):
TATAAATATGTTTAATCCATAACCCTTCCTCAACCTTTA
Found at i:93817020 original size:77 final size:77
Alignment explanation
Indices: 93816869--93817022 Score: 281
Period size: 77 Copynumber: 2.0 Consensus size: 77
93816859 AAATTGTAAG
*
93816869 AAAACATAAAAAGGTTAATAGTTTTATGTTTTTTTGCAAATTTGGCTAGGATTGGGCTCTAGTCA
1 AAAACATAAAAAGGTTAATAGTTTTATGTTTTATTGCAAATTTGGCTAGGATTGGGCTCTAGTCA
93816934 AAAAATCCTTAC
66 AAAAATCCTTAC
* *
93816946 AAAACATAAAAAGGTTAATAGTTTTTTGTTTTATTGCAAATTTGGCTAGGATTGGGTTCTAGTCA
1 AAAACATAAAAAGGTTAATAGTTTTATGTTTTATTGCAAATTTGGCTAGGATTGGGCTCTAGTCA
93817011 AAAAATCCTTAC
66 AAAAATCCTTAC
93817023 TTGAGGCTTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (77 bp):
AAAACATAAAAAGGTTAATAGTTTTATGTTTTATTGCAAATTTGGCTAGGATTGGGCTCTAGTCA
AAAAATCCTTAC
Found at i:93817199 original size:20 final size:19
Alignment explanation
Indices: 93817165--93817212 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
93817155 GTTATTTGAA
*
93817165 TTTTAT-ATTTTATAATTT
1 TTTTATAATTTTATAACTT
93817183 TTTTATAATTCTTATAACTT
1 TTTTATAATT-TTATAACTT
*
93817203 TTTAATAATT
1 TTTTATAATT
93817213 AGTAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 6 0.23
19 3 0.12
20 17 0.65
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTATAATTTTATAACTT
Found at i:93820145 original size:5 final size:5
Alignment explanation
Indices: 93820135--93820166 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
93820125 TTTTGATTTT
93820135 AATAA AATAA AATAA AAT-- AATAA AATAA AATA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATA
93820167 TCTTTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
3 3 0.12
5 22 0.88
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:93820158 original size:13 final size:13
Alignment explanation
Indices: 93820140--93820166 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
93820130 ATTTTAATAA
93820140 AATAAAATAAAAT
1 AATAAAATAAAAT
93820153 AATAAAATAAAAT
1 AATAAAATAAAAT
93820166 A
1 A
93820167 TCTTTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AATAAAATAAAAT
Found at i:93829054 original size:12 final size:12
Alignment explanation
Indices: 93829037--93829063 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
93829027 CCTTCTTCTC
93829037 CCCTTTCCCCTT
1 CCCTTTCCCCTT
93829049 CCCTTTCCCCTT
1 CCCTTTCCCCTT
93829061 CCC
1 CCC
93829064 CTTGGGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (12 bp):
CCCTTTCCCCTT
Found at i:93829185 original size:25 final size:27
Alignment explanation
Indices: 93829125--93829185 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
93829115 CCAGGTAAGG
*
93829125 CTTCTTCTCCTTCATCCGTTCTTCATTC
1 CTTC-TCTTCTTCATCCGTTCTTCATTC
*
93829153 CTT-T-TTCTTCTTCCGTTCTTCA-T-
1 CTTCTCTTCTTCATCCGTTCTTCATTC
93829176 CTTCTCTTCT
1 CTTCTCTTCT
93829186 CAGCATATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 3 0.10
24 2 0.07
25 20 0.69
26 1 0.03
28 3 0.10
ACGTcount: A:0.05, C:0.36, G:0.03, T:0.56
Consensus pattern (27 bp):
CTTCTCTTCTTCATCCGTTCTTCATTC
Found at i:93831884 original size:4 final size:4
Alignment explanation
Indices: 93831875--93831908 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
93831865 AAGTTTTATT
93831875 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
93831909 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:93831916 original size:22 final size:22
Alignment explanation
Indices: 93831858--93831917 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
93831848 AAGTGGCCCA
*
93831858 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
93831882 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
93831903 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
93831918 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:93834286 original size:18 final size:18
Alignment explanation
Indices: 93834265--93834303 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
93834255 GATTGAGAGT
* *
93834265 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
93834283 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
93834301 GAA
1 GAA
93834304 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:93835619 original size:4 final size:4
Alignment explanation
Indices: 93835610--93835643 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
93835600 AAGTTTTATT
93835610 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
93835644 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:93835651 original size:22 final size:22
Alignment explanation
Indices: 93835593--93835652 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
93835583 AAGTGGCCCA
*
93835593 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
93835617 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
93835638 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
93835653 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:93837845 original size:21 final size:21
Alignment explanation
Indices: 93837819--93837870 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
93837809 CGCTGTTTCT
*
93837819 AATCTCACCGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
93837840 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
93837861 AATCTCACCG
1 AATCTCACCG
93837871 TCACCGCTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.37, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:93844340 original size:44 final size:44
Alignment explanation
Indices: 93844277--93844363 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
93844267 CCTTTCTCTC
*
93844277 AATTTATAAAATTTGGTGTGTCAAGGCAAGCTATTTTGTAACCT
1 AATTTATAAAATTTGGTGTGTCAAGGCAAGCCATTTTGTAACCT
*
93844321 AATTTATAATATTTGGTGTGTCAAGGCAAGCCATTTTGTAACC
1 AATTTATAAAATTTGGTGTGTCAAGGCAAGCCATTTTGTAACC
93844364 CATCTTTCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (44 bp):
AATTTATAAAATTTGGTGTGTCAAGGCAAGCCATTTTGTAACCT
Found at i:93852416 original size:13 final size:12
Alignment explanation
Indices: 93852385--93852415 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
93852375 ATGTGTGAGG
*
93852385 GTTTTTGCTTTT
1 GTTTTTTCTTTT
93852397 GTTTTTTCTTTT
1 GTTTTTTCTTTT
93852409 GTTTTTT
1 GTTTTTT
93852416 TAACAGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.06, G:0.13, T:0.81
Consensus pattern (12 bp):
GTTTTTTCTTTT
Found at i:93863780 original size:18 final size:19
Alignment explanation
Indices: 93863735--93863781 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
93863725 GTATATATTT
93863735 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
93863753 TAAATCTTATTT-GGTAGA
1 TAAATTTTATTTAGGTAGA
*
93863771 TAAGTTTTATT
1 TAAATTTTATT
93863782 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:93863843 original size:43 final size:43
Alignment explanation
Indices: 93863795--93863887 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
93863785 ATTCTAGAAA
93863795 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
93863838 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
93863881 TATTTTC
1 TATTTTC
93863888 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:93868519 original size:19 final size:19
Alignment explanation
Indices: 93868473--93868520 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
93868463 GTATATATTT
93868473 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
93868491 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
93868510 TAAGTTTTATT
1 TAAATTTTATT
93868521 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:93868582 original size:43 final size:43
Alignment explanation
Indices: 93868530--93868626 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
93868520 TCATATTCTA
*
93868530 GAAA-TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAG
1 GAAACTATTTTCT-TTTTATATTTTAGTAGTTTACTAGAATAAG
* *
93868572 GGAACTATTTTCTTTTTATATTTTAGTAGTTTATTAGAATAAG
1 GAAACTATTTTCTTTTTATATTTTAGTAGTTTACTAGAATAAG
93868615 GAAACTATTTTC
1 GAAACTATTTTC
93868627 CCAATTAGGA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 3 0.06
43 45 0.92
44 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (43 bp):
GAAACTATTTTCTTTTTATATTTTAGTAGTTTACTAGAATAAG
Found at i:93871068 original size:17 final size:17
Alignment explanation
Indices: 93871043--93871081 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
93871033 ATACAAGCTA
* *
93871043 TAAACAAAAATAGTTAT
1 TAAAGAAAAATAATTAT
*
93871060 TAAAGAAAAATAATTTT
1 TAAAGAAAAATAATTAT
93871077 TAAAG
1 TAAAG
93871082 CTATTTTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (17 bp):
TAAAGAAAAATAATTAT
Found at i:93872151 original size:20 final size:19
Alignment explanation
Indices: 93872099--93872150 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
93872089 AGAAATATAA
93872099 ATTTTAAAATTTTT-ACAAAT
1 ATTTT-AAATTTTTGA-AAAT
93872119 ATTTTAAATTTTTGAAAAT
1 ATTTTAAATTTTTGAAAAT
93872138 AGTTTT-AATTTTT
1 A-TTTTAAATTTTT
93872151 TTTTGTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 20 0.67
20 10 0.33
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (19 bp):
ATTTTAAATTTTTGAAAAT
Found at i:93872368 original size:53 final size:55
Alignment explanation
Indices: 93872263--93872369 Score: 157
Period size: 56 Copynumber: 2.0 Consensus size: 55
93872253 ATAAATTATT
*
93872263 TTCATATAATTTATACCTTTCAATAAATCATCAACAACTCAAACATGAAAACTATC
1 TTCATATAATTTATACCTTTCAACAAAT-ATCAACAACTCAAACATGAAAACTATC
*
93872319 TTCATATAATTTATATCC-TTCAACAAAT-T-GACAACTCAAACATGAAAACTA
1 TTCATATAATTTATA-CCTTTCAACAAATATCAACAACTCAAACATGAAAACTA
93872370 CGTTCAAACA
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
53 21 0.44
54 1 0.02
56 24 0.50
57 2 0.04
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.32
Consensus pattern (55 bp):
TTCATATAATTTATACCTTTCAACAAATATCAACAACTCAAACATGAAAACTATC
Found at i:93904232 original size:31 final size:29
Alignment explanation
Indices: 93904197--93904277 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
93904187 AATCTCAAAA
*
93904197 TTATATATGAAATTT-ACTTTAATGTAAAATT
1 TTATACATGAAATTTGA-TTT--TGTAAAATT
* **
93904228 TTATACATGAACTTTGATTTTGTGCAATT
1 TTATACATGAAATTTGATTTTGTAAAATT
93904257 TTATACATGAAATTTTGATTT
1 TTATACATGAAA-TTTGATTT
93904278 GATCAAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 18 0.42
30 8 0.19
31 16 0.37
32 1 0.02
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.49
Consensus pattern (29 bp):
TTATACATGAAATTTGATTTTGTAAAATT
Found at i:93904705 original size:32 final size:32
Alignment explanation
Indices: 93904669--93904735 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
93904659 AGTATTAAAG
93904669 GCCCTTGAAGAATTTCCAAAAAGAAAAATTAA
1 GCCCTTGAAGAATTTCCAAAAAGAAAAATTAA
*
93904701 GCCCTTGAATAATTTCCAAAAAGAAAAATTAA
1 GCCCTTGAAGAATTTCCAAAAAGAAAAATTAA
93904733 GCC
1 GCC
93904736 ACTCTAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (32 bp):
GCCCTTGAAGAATTTCCAAAAAGAAAAATTAA
Found at i:93909277 original size:20 final size:20
Alignment explanation
Indices: 93909248--93909326 Score: 72
Period size: 20 Copynumber: 4.0 Consensus size: 20
93909238 TAAAGTGCAT
*
93909248 ATTAGAACACAAAGCACATC
1 ATTAGCACACAAAGCACATC
* **
93909268 ATTAGCACACGAAGTGCATC
1 ATTAGCACACAAAGCACATC
* *
93909288 A-TGGTACACAAAGCTACATC
1 ATTAGCACACAAAGC-ACATC
*
93909308 -TTAGCGCACAAAGCACATC
1 ATTAGCACACAAAGCACATC
93909327 TTGGTACATG
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
19 14 0.31
20 31 0.69
ACGTcount: A:0.41, C:0.27, G:0.15, T:0.18
Consensus pattern (20 bp):
ATTAGCACACAAAGCACATC
Found at i:93909332 original size:39 final size:39
Alignment explanation
Indices: 93909254--93909334 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 39
93909244 GCATATTAGA
* **
93909254 ACACAAAGCACATCATTAGCACACGAAGTGCATCATGGT
1 ACACAAAGCACATCATTAGCACACAAAGCACATCATGGT
* *
93909293 ACACAAAGCTACATC-TTAGCGCACAAAGCACATCTTGGT
1 ACACAAAGC-ACATCATTAGCACACAAAGCACATCATGGT
93909332 ACA
1 ACA
93909335 TGAAGTGCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
39 31 0.86
40 5 0.14
ACGTcount: A:0.38, C:0.27, G:0.16, T:0.19
Consensus pattern (39 bp):
ACACAAAGCACATCATTAGCACACAAAGCACATCATGGT
Found at i:93920200 original size:18 final size:17
Alignment explanation
Indices: 93920177--93920210 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
93920167 CCACAATTAT
*
93920177 ATACACTTTAATATCAAA
1 ATACACATTAAT-TCAAA
93920195 ATACACATTAATTCAA
1 ATACACATTAATTCAA
93920211 TTCATCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32
Consensus pattern (17 bp):
ATACACATTAATTCAAA
Found at i:93921370 original size:18 final size:18
Alignment explanation
Indices: 93921347--93921383 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
93921337 ATTTTTACAA
93921347 TTTAATCCCTTAATTAGT
1 TTTAATCCCTTAATTAGT
93921365 TTTAATCCCTTAATTAGT
1 TTTAATCCCTTAATTAGT
93921383 T
1 T
93921384 AATCTATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.16, G:0.05, T:0.51
Consensus pattern (18 bp):
TTTAATCCCTTAATTAGT
Found at i:93928074 original size:93 final size:92
Alignment explanation
Indices: 93927942--93928136 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
93927932 TTGATTTTAG
* *
93927942 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
93928006 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
93928034 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
93928099 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
93928127 CAAATTCATA
1 TAAATTCATA
93928137 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:93928184 original size:48 final size:52
Alignment explanation
Indices: 93928114--93928212 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
93928104 AATAATTATT
93928114 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
93928162 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
93928213 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:93928194 original size:17 final size:17
Alignment explanation
Indices: 93928169--93928202 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93928159 ATAATTTTAA
*
93928169 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
93928186 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
93928203 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:93928219 original size:17 final size:16
Alignment explanation
Indices: 93928174--93928221 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
93928164 TTTAAATTTT
93928174 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
93928191 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
93928205 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
93928222 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:93928276 original size:54 final size:54
Alignment explanation
Indices: 93928218--93928396 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 54
93928208 ATAATCATAT
93928218 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
* * * * * * * *
93928272 ATTATATATTTTAATTATATT-ATATTTAATAATAATTATGTTATTTTA-TATTTTACAGTATCA
1 ATTAT-GA-TTTGAGTAAATTCATA--TAAGAAT-ATTA-ATTA-TTAAGAATTTT--A-T-T-A
93928335 TA
54 -A
*
93928337 TATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
93928392 ATTAT
1 ATTAT
93928397 ATATTTTAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 32
0.65 0.12 0.23
Matches are distributed among these distances:
54 10 0.11
55 5 0.05
56 10 0.11
57 7 0.08
58 5 0.05
59 9 0.10
60 6 0.07
61 9 0.10
62 5 0.05
63 7 0.08
64 10 0.11
65 4 0.04
66 5 0.05
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
Found at i:93928279 original size:61 final size:61
Alignment explanation
Indices: 93928214--93928401 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
93928204 AGTTATAATC
93928214 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * * *
93928275 ATATATTTTAATTAT-ATTATATTTA-ATAATAATTATGTTATT-TT-A-TATTTTA-CAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAA-TAT-TAATTATTAAGAATTTTATTA-AATT
*
93928334 ATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
93928395 ATATATT
1 ATATATT
93928402 TTAATTAAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 30 0.32
60 14 0.15
61 38 0.40
62 6 0.06
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:93928293 original size:18 final size:17
Alignment explanation
Indices: 93928262--93928296 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93928252 ATTATTAAGA
93928262 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
93928279 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
93928297 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:93928335 original size:120 final size:120
Alignment explanation
Indices: 93928211--93928433 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
93928201 ATTAGTTATA
93928211 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
* *
93928276 TATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
*
93928331 ATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
93928396 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
93928434 TAAATATGAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
Found at i:93928410 original size:18 final size:17
Alignment explanation
Indices: 93928382--93928416 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93928372 ATTATTAAGA
*
93928382 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
93928399 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
93928417 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:93928428 original size:54 final size:54
Alignment explanation
Indices: 93928245--93928430 Score: 142
Period size: 54 Copynumber: 3.2 Consensus size: 54
93928235 TTCATATAAG
* *
93928245 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
* * * *
93928299 AATAATAATTATGT--TATTTTATATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAATT-ATAT
**
93928362 AAG
53 -TT
* *
93928365 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
93928419 AATAATAATTAT
1 AATAATAATTAT
93928431 GTTTAAATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 32
0.67 0.11 0.22
Matches are distributed among these distances:
53 4 0.04
54 24 0.24
55 5 0.05
56 12 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.12
65 5 0.05
66 13 0.13
67 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (54 bp):
AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
Found at i:93928537 original size:144 final size:147
Alignment explanation
Indices: 93928370--93928641 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
93928360 ATAAGAATAT
*
93928370 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
93928435 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
93928497 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
93928514 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
93928579 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
93928642 CAATTATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:93928554 original size:18 final size:17
Alignment explanation
Indices: 93928526--93928560 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93928516 ATTATTAAGA
*
93928526 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
93928543 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
93928561 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:93928770 original size:44 final size:45
Alignment explanation
Indices: 93928722--93928816 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
93928712 TTACACCTCT
* * *
93928722 ATTACATTCAACCAAACA-CAGTTTTATTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
93928766 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
93928811 ATTACA
1 ATTACA
93928817 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:93928816 original size:16 final size:16
Alignment explanation
Indices: 93928795--93928827 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
93928785 TTGATTTGCT
*
93928795 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
93928811 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
93928827 A
1 A
93928828 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:93928837 original size:21 final size:21
Alignment explanation
Indices: 93928808--93928850 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
93928798 ACACCTCTAT
*
93928808 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
93928829 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
93928850 T
1 T
93928851 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:93931688 original size:42 final size:41
Alignment explanation
Indices: 93931624--93931703 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 41
93931614 TTAGGCAGTG
*
93931624 TTTCTCTGTTATAAATCGCTGCTGATAAATGTCATCATGGGA
1 TTTCTCTGTTATAAATCACTGCTGAT-AATGTCATCATGGGA
*
93931666 TTTCTCTGTTATCAATCACTGCTGATAATGTCATCATG
1 TTTCTCTGTTATAAATCACTGCTGATAATGTCATCATG
93931704 TGGTTACTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 12 0.33
42 24 0.67
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (41 bp):
TTTCTCTGTTATAAATCACTGCTGATAATGTCATCATGGGA
Found at i:93934040 original size:3 final size:3
Alignment explanation
Indices: 93934032--93934070 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
93934022 TTGAACATTC
93934032 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
93934071 TAAGATTAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:93934718 original size:18 final size:17
Alignment explanation
Indices: 93934695--93934734 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
93934685 TTTGAAATTA
93934695 TAAAAACATAAAAAAAAT
1 TAAAAA-ATAAAAAAAAT
*
93934713 TAAAAAATTAAAAAAAT
1 TAAAAAATAAAAAAAAT
*
93934730 CAAAA
1 TAAAA
93934735 TTAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (17 bp):
TAAAAAATAAAAAAAAT
Found at i:93934734 original size:27 final size:27
Alignment explanation
Indices: 93934689--93934757 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 27
93934679 ATTCATTTTG
93934689 AAATTATAAAAACATAAAAAAAATTAAA
1 AAATTATAAAAA-ATAAAAAAAATTAAA
** *
93934717 AAATTA-AAAAAATCAAAATTAATTTAA
1 AAATTATAAAAAAT-AAAAAAAATTAAA
93934744 AAATTATAAAAAAT
1 AAATTATAAAAAAT
93934758 TTGGACACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.06
27 21 0.58
28 13 0.36
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (27 bp):
AAATTATAAAAAATAAAAAAAATTAAA
Found at i:93934894 original size:42 final size:43
Alignment explanation
Indices: 93934814--93934901 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 43
93934804 TAACAACCAT
*
93934814 TAAAATTATATGGTTTTTTAATTAATTTCTAATAATTTTTTTA
1 TAAAATTATATGATTTTTTAATTAATTTCTAATAATTTTTTTA
* *
93934857 TAAAATT-TAATGATTTTTTAA-TAATTT-TATGTTATTTTTTTA
1 TAAAATTAT-ATGATTTTTTAATTAATTTCTA-ATAATTTTTTTA
93934899 TAA
1 TAA
93934902 TTTTAGATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
41 2 0.05
42 20 0.50
43 18 0.45
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (43 bp):
TAAAATTATATGATTTTTTAATTAATTTCTAATAATTTTTTTA
Found at i:93943160 original size:2 final size:2
Alignment explanation
Indices: 93943153--93943206 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
93943143 GGGAGAGTGA
93943153 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
93943195 AG AG AG AG AG AG
1 AG AG AG AG AG AG
93943207 TTTGTATAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:93951262 original size:23 final size:23
Alignment explanation
Indices: 93951205--93951262 Score: 79
Period size: 21 Copynumber: 2.7 Consensus size: 23
93951195 ACACATAAAT
93951205 TGCCT-AAA-ACGACAAACGAGG
1 TGCCTGAAATACGACAAACGAGG
*
93951226 TGCCTG--ATACGACACACGAGG
1 TGCCTGAAATACGACAAACGAGG
93951247 TGCCTGAAATACGACA
1 TGCCTGAAATACGACA
93951263 TATAAAGTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 1 0.03
21 23 0.72
23 8 0.25
ACGTcount: A:0.36, C:0.26, G:0.24, T:0.14
Consensus pattern (23 bp):
TGCCTGAAATACGACAAACGAGG
Found at i:93951675 original size:15 final size:15
Alignment explanation
Indices: 93951649--93951705 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
93951639 CATATATATT
93951649 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
93951663 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
93951678 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
93951693 ATATAAATTCAAT
1 ATATAATTTCAAT
93951706 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:93952985 original size:5 final size:5
Alignment explanation
Indices: 93952977--93953003 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
93952967 TCTTTAGTTT
93952977 ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA AT
93953004 TAAAACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:93961817 original size:40 final size:40
Alignment explanation
Indices: 93961744--93961856 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 40
93961734 TATCTAGCAC
* * * *
93961744 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCATGA
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
* *
93961783 AGCCTGCGGGTCTTTAAGCTCGGATACAATTCCAGTACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
93961823 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
93961857 CATCAAATAA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 16 0.25
40 49 0.75
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:93969135 original size:16 final size:16
Alignment explanation
Indices: 93969116--93969161 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
93969106 AACCTTTTTT
93969116 TTAATGATTTTGGTAC
1 TTAATGATTTTGGTAC
**
93969132 TTAATTTTTTTGGTA-
1 TTAATGATTTTGGTAC
93969147 -TAATGATTTTGGTAC
1 TTAATGATTTTGGTAC
93969162 ATATTAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
14 12 0.48
16 13 0.52
ACGTcount: A:0.24, C:0.04, G:0.17, T:0.54
Consensus pattern (16 bp):
TTAATGATTTTGGTAC
Found at i:93969150 original size:14 final size:15
Alignment explanation
Indices: 93969117--93969161 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
93969107 ACCTTTTTTT
93969117 TAATGATTTTGGTAC
1 TAATGATTTTGGTAC
**
93969132 TTAATTTTTTTGGTA-
1 -TAATGATTTTGGTAC
93969147 TAATGATTTTGGTAC
1 TAATGATTTTGGTAC
93969162 ATATTAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 12 0.50
16 12 0.50
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.53
Consensus pattern (15 bp):
TAATGATTTTGGTAC
Found at i:93972797 original size:34 final size:34
Alignment explanation
Indices: 93972714--93972804 Score: 98
Period size: 34 Copynumber: 2.7 Consensus size: 34
93972704 ATGTTAAACA
*
93972714 CTGACTCTCTTTCAAGTTTTTTTCTTATACAACT
1 CTGACTCTCTTTCATGTTTTTTTCTTATACAACT
*
93972748 CTGACT-TCTTTTCATGTTATTTTT-TTATGCAACT
1 CTGACTCTC-TTTCATGTT-TTTTTCTTATACAACT
* *
93972782 CCT-ACTCTCTCTCATGTTGTTTT
1 -CTGACTCTCTTTCATGTTTTTTT
93972805 ATGTGCTATG
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
33 6 0.12
34 34 0.69
35 9 0.18
ACGTcount: A:0.16, C:0.23, G:0.08, T:0.53
Consensus pattern (34 bp):
CTGACTCTCTTTCATGTTTTTTTCTTATACAACT
Found at i:93975287 original size:26 final size:26
Alignment explanation
Indices: 93975225--93975295 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
93975215 TCTCATCCCT
* ** * *
93975225 ATTTTGCCCCCAACAAAATTTTGATG
1 ATTTTGCCCCTAGTAAAATCTTGACG
*
93975251 ATTTTACCCCTAGTAAAATCTTGACG
1 ATTTTGCCCCTAGTAAAATCTTGACG
93975277 ATTTTGCCCCTAGTAAAAT
1 ATTTTGCCCCTAGTAAAAT
93975296 TATGAGAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (26 bp):
ATTTTGCCCCTAGTAAAATCTTGACG
Found at i:93986130 original size:3 final size:3
Alignment explanation
Indices: 93986122--93986158 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
93986112 AAAAGAACAA
93986122 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
93986159 TTTTGAAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:93987303 original size:16 final size:17
Alignment explanation
Indices: 93987271--93987303 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
93987261 TTATTTTATG
*
93987271 TTAATTAATAGAAGCAT
1 TTAATTAATAAAAGCAT
93987288 TTAATT-ATAAAAGCAT
1 TTAATTAATAAAAGCAT
93987304 AAATAATGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
TTAATTAATAAAAGCAT
Found at i:93989572 original size:4 final size:4
Alignment explanation
Indices: 93989563--93989602 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
93989553 AAGAAGCAAA
* *
93989563 TATG TATG TATG TTTG TATG TATG TATG CATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
93989603 CATACCCCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:93996880 original size:16 final size:15
Alignment explanation
Indices: 93996861--93996899 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
93996851 ATTTAAAAGA
93996861 TTTAAATTCAAAAAAC
1 TTTAAATTC-AAAAAC
* *
93996877 TTTAATTTCAAAAAG
1 TTTAAATTCAAAAAC
93996892 TTTAAATT
1 TTTAAATT
93996900 TAGAAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (15 bp):
TTTAAATTCAAAAAC
Found at i:93996900 original size:16 final size:17
Alignment explanation
Indices: 93996855--93996900 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
93996845 TTCAAAATTT
93996855 AAAAGATTTAAA-TTCAA
1 AAAAG-TTTAAATTTCAA
*
93996872 AAAACTTT-AATTTC-A
1 AAAAGTTTAAATTTCAA
93996887 AAAAGTTTAAATTT
1 AAAAGTTTAAATTT
93996901 AGAAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 10 0.40
16 11 0.44
17 4 0.16
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (17 bp):
AAAAGTTTAAATTTCAA
Found at i:94000090 original size:20 final size:21
Alignment explanation
Indices: 94000065--94000104 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94000055 CAAAGCAAAT
*
94000065 AAGGGC-ACACGTCCGTGTGA
1 AAGGGCGACACGCCCGTGTGA
94000085 AAGGGCGACACGCCCGTGTG
1 AAGGGCGACACGCCCGTGTG
94000105 TCTTCTAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AAGGGCGACACGCCCGTGTGA
Found at i:94001365 original size:48 final size:47
Alignment explanation
Indices: 94001286--94001559 Score: 298
Period size: 48 Copynumber: 5.7 Consensus size: 47
94001276 CAGGGTAAAT
* * * * * **
94001286 TGCCGATGCCATGTCTCAGACATGATTTTACACTGGCTCACATGTCGA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAC-A
94001334 -GCCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
1 TG-CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
* * *
94001381 TTGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATAACA
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
* * *
94001429 TTGGCGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACA
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
* * * **
94001477 TTGGCGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATG
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
* * *
94001525 TGGTCGATGCCATGTCCCAGACATCGTCTTACACT
1 T-GCCGATGCCATGTCCCAAACATGGTCTTACACT
94001560 AGCACACATA
Statistics
Matches: 202, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 3 0.01
48 198 0.98
49 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACA
Found at i:94001452 original size:23 final size:23
Alignment explanation
Indices: 94001425--94001500 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 23
94001415 TGGCTCTTAT
94001425 AACATTGGCGATGTCATGTTCCA
1 AACATTGGCGATGTCATGTTCCA
*
94001448 AACA-TGGTC--T-TACACTGGCTCTCA
1 AACATTGG-CGATGT-CA-T-GTTC-CA
94001472 TAACATTGGCGATGTCATGTTCCA
1 -AACATTGGCGATGTCATGTTCCA
94001496 AACAT
1 AACAT
94001501 GGTCTTACAC
Statistics
Matches: 41, Mismatches: 2, Indels: 20
0.65 0.03 0.32
Matches are distributed among these distances:
20 1 0.02
21 3 0.07
22 4 0.10
23 13 0.32
24 4 0.10
25 8 0.20
26 4 0.10
27 3 0.07
28 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (23 bp):
AACATTGGCGATGTCATGTTCCA
Found at i:94001453 original size:96 final size:96
Alignment explanation
Indices: 94001337--94001559 Score: 351
Period size: 96 Copynumber: 2.3 Consensus size: 96
94001327 ATGTCGAGCC
*
94001337 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGGCGATGCCATGTTCCAAA
*
94001402 CATGGTCTTACACTGGCTCTTATAACAT-TGG-
66 CATGGTCTTACACTGGCTCTCAT-A-ATGTGGT
* * *
94001433 CGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGGCGATGTCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGGCGATGCCATGTTCCAAA
94001498 CATGGTCTTACACTGGCTCTCATAATGTGGT
66 CATGGTCTTACACTGGCTCTCATAATGTGGT
* *
94001529 CGATGCCATGTCCCAGACATCGTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCTTACACT
94001560 AGCACACATA
Statistics
Matches: 116, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 2 0.02
95 4 0.03
96 110 0.95
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGGCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCTCATAATGTGGT
Found at i:94009215 original size:48 final size:48
Alignment explanation
Indices: 94009030--94009302 Score: 237
Period size: 48 Copynumber: 5.7 Consensus size: 48
94009020 GTCAATTATT
* * * * **
94009030 AATGCCATGTCCCAAACATGGTTTTACACTGGCTCACGTGTCGA--GCC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAAC-ATTGCC
* * * * ** *
94009077 AGATGCCTTGTCTCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCC
1 A-ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACATTGCC
* * *
94009126 AATGCCATGTCCCAGACATGGTTTTACACTAACTCTCATAACATTGCC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACATTGCC
* * * *
94009174 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTTATAACATTGGC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACATTGCC
* * * * ** *
94009222 GATGCCATGTTCCAAATATGGTCTTAC-CGTGGCTCTCATAATGTGGCC
1 AATGCCATGTCCCAAACATGGTCTTACAC-TAGCTCTCATAACATTGCC
* *
94009270 AATGCTATGTCCCAGACATGGTCTTACACTAGC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGC
94009303 ACACATATCA
Statistics
Matches: 186, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
47 3 0.02
48 178 0.96
49 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACATTGCC
Found at i:94021001 original size:40 final size:41
Alignment explanation
Indices: 94020949--94021045 Score: 144
Period size: 40 Copynumber: 2.4 Consensus size: 41
94020939 CTATCTTGGT
94020949 ATCGCACACTTAGTGCCT-CTTATAACTGAAGCTATTCCAA
1 ATCGCACACTTAGTGCCTACTTATAACTGAAGCTATTCCAA
* * * *
94020989 TTCGCACACTTAGTG-CTATTTATAGCTGAAGCTATTTCAA
1 ATCGCACACTTAGTGCCTACTTATAACTGAAGCTATTCCAA
94021029 ATCGCACACTTAGTGCC
1 ATCGCACACTTAGTGCC
94021046 GAACATAGTC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 2 0.04
40 47 0.94
41 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (41 bp):
ATCGCACACTTAGTGCCTACTTATAACTGAAGCTATTCCAA
Found at i:94029608 original size:21 final size:21
Alignment explanation
Indices: 94029582--94029622 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94029572 AAGAGAATCC
*
94029582 GGCTTTTAAGATGGATCAATT
1 GGCTTTCAAGATGGATCAATT
*
94029603 GGCTTTCGAGATGGATCAAT
1 GGCTTTCAAGATGGATCAAT
94029623 CGACTTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (21 bp):
GGCTTTCAAGATGGATCAATT
Found at i:94029629 original size:21 final size:21
Alignment explanation
Indices: 94029590--94029630 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94029580 CCGGCTTTTA
* *
94029590 AGATGGATCAATTGGCTTTCG
1 AGATGGATCAATCGACTTTCG
94029611 AGATGGATCAATCGACTTTC
1 AGATGGATCAATCGACTTTC
94029631 TTCGAGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (21 bp):
AGATGGATCAATCGACTTTCG
Found at i:94033293 original size:99 final size:99
Alignment explanation
Indices: 94033122--94033305 Score: 359
Period size: 99 Copynumber: 1.9 Consensus size: 99
94033112 ACTAATATGT
94033122 ATTTATCGCAAGTAGCAACATACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
1 ATTTATCGCAAGTAGCAACATACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
94033187 TGGTAATGTTCCAAGATATTACCTATTCGCTGGC
66 TGGTAATGTTCCAAGATATTACCTATTCGCTGGC
*
94033221 ATTTATCGCAAGTAGCAACGTACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
1 ATTTATCGCAAGTAGCAACATACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
94033286 TGGTAATGTTCCAAGATATT
66 TGGTAATGTTCCAAGATATT
94033306 CAATGCTTCT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 84 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (99 bp):
ATTTATCGCAAGTAGCAACATACCTGTTGGCGTCCTTGAAAAGTGTAGGACAATAAAAACCTGAG
TGGTAATGTTCCAAGATATTACCTATTCGCTGGC
Found at i:94037881 original size:10 final size:10
Alignment explanation
Indices: 94037854--94037893 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
94037844 TTAAATTCTA
94037854 AAAGATAAAT
1 AAAGATAAAT
94037864 ACAA-ATAAAT
1 A-AAGATAAAT
*
94037874 AAAGATAATT
1 AAAGATAAAT
94037884 AAAGATAAAT
1 AAAGATAAAT
94037894 GATAATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:94038105 original size:14 final size:15
Alignment explanation
Indices: 94038086--94038116 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
94038076 AAATTCGCAC
94038086 TTTTTTCCCTT-AAT
1 TTTTTTCCCTTCAAT
94038100 TTTTTTCCCTTCAAT
1 TTTTTTCCCTTCAAT
94038115 TT
1 TT
94038117 AGTCCCTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.13, C:0.23, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTTCCCTTCAAT
Found at i:94042992 original size:48 final size:48
Alignment explanation
Indices: 94042936--94043029 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
94042926 GGTTGTTGGA
*
94042936 TCCCCGCTTCGCATCTCGTGGTCTCTCATTGCCACTTGTGCTATCAGT
1 TCCCCGCTTCGCATCTCGTGGTCTCTCATTGCCACTTATGCTATCAGT
* *
94042984 TCCCCGCTTCGCATTTCGTGGTTTCTCATTGCCACTTATGCTATCA
1 TCCCCGCTTCGCATCTCGTGGTCTCTCATTGCCACTTATGCTATCA
94043030 ATACTGTGGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.12, C:0.34, G:0.17, T:0.37
Consensus pattern (48 bp):
TCCCCGCTTCGCATCTCGTGGTCTCTCATTGCCACTTATGCTATCAGT
Found at i:94051558 original size:141 final size:137
Alignment explanation
Indices: 94051305--94051558 Score: 289
Period size: 141 Copynumber: 1.8 Consensus size: 137
94051295 TGAGCCAGTG
* *
94051305 TAAGACATGTCTGGGACATGCATCAGCCACGATATGAGAGCCAGTGTAAGACATGTCTGGGACAT
1 TAAGACATGTCTGGGACATGCATCAGACACGATATGAGAGCCAGTGTAAGACATGTCTGGGACAG
* ** * * *
94051370 GCTTCGGCCTCAGGATATTCAAGCTAGTGTAAGACCTATCTGGGACATAGTGCCAGCTTATTGTG
66 GCATCGAACTCA-GATATACAAGCCAGTGTAAGACCTATCTGAGACATAGTGCCAGCTTATTGTG
94051435 TGTCAGCA
130 TGTCAGCA
* *
94051443 TAAGACCTGTCTGGGACATGTCATC-GACACCGATAGATGAGAGCCAGTGTAAGACTTGTCTGGG
1 TAAGACATGTCTGGGACATG-CATCAGACA-CGAT--ATGAGAGCCAGTGTAAGACATGTCTGGG
* * * *
94051507 ACACGGCATCGAATTTA-ATGTACTAGCCAGTGTAAGACC-ATGCCTGAGACAT
62 ACA-GGCATCGAACTCAGATATACAAGCCAGTGTAAGACCTAT--CTGAGACAT
94051559 GACGTCAGCA
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
138 22 0.23
139 10 0.11
140 18 0.19
141 38 0.40
142 7 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (137 bp):
TAAGACATGTCTGGGACATGCATCAGACACGATATGAGAGCCAGTGTAAGACATGTCTGGGACAG
GCATCGAACTCAGATATACAAGCCAGTGTAAGACCTATCTGAGACATAGTGCCAGCTTATTGTGT
GTCAGCA
Found at i:94052851 original size:20 final size:21
Alignment explanation
Indices: 94052813--94052851 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
94052803 TCAACAGGGC
94052813 CACACGGACGTGTTGCCCTTT
1 CACACGGACGTGTTGCCCTTT
*
94052834 CACACGGGCGTG-TGCCCT
1 CACACGGACGTGTTGCCCT
94052852 GTTCCAACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (21 bp):
CACACGGACGTGTTGCCCTTT
Found at i:94057347 original size:7 final size:7
Alignment explanation
Indices: 94057331--94057379 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
94057321 GGCAACCCAA
94057331 TTTTTA-
1 TTTTTAT
94057337 TTTTTAT
1 TTTTTAT
94057344 TTTTTAT
1 TTTTTAT
*
94057351 TTATTA-
1 TTTTTAT
*
94057357 -CTTTAT
1 TTTTTAT
94057363 TTTTTAT
1 TTTTTAT
94057370 TTTTTAT
1 TTTTTAT
94057377 TTT
1 TTT
94057380 ATTTGTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
5 3 0.08
6 6 0.17
7 27 0.75
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:94057361 original size:19 final size:19
Alignment explanation
Indices: 94057339--94057383 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
94057329 AATTTTTATT
94057339 TTTATTTTTTATTTATTAC
1 TTTATTTTTTATTTATTAC
* *
94057358 TTTATTTTTTATTTTTTAT
1 TTTATTTTTTATTTATTAC
94057377 TTTATTT
1 TTTATTT
94057384 GTTTGGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTATTTTTTATTTATTAC
Found at i:94058538 original size:96 final size:97
Alignment explanation
Indices: 94058374--94058557 Score: 307
Period size: 96 Copynumber: 1.9 Consensus size: 97
94058364 TTTTTAAGAA
* *
94058374 TGTGTTGGGCTGAGTAAATAAGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
1 TGTGTTGGGCTGAGTAAACAAGGTAAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
*
94058439 ATATGTTCTTAAG-AAAAATAAAAATTAGTAG
66 ATATATTCTTAAGCAAAAATAAAAATTAGTAG
* *
94058470 TGTGTTGGGCTGAGTAACCGAGGTAAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
1 TGTGTTGGGCTGAGTAAACAAGGTAAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
*
94058535 ATATATTCTTAAGCAAAACTAAA
66 ATATATTCTTAAGCAAAAATAAA
94058558 TAAATAAATA
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
96 73 0.90
97 8 0.10
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (97 bp):
TGTGTTGGGCTGAGTAAACAAGGTAAGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
ATATATTCTTAAGCAAAAATAAAAATTAGTAG
Found at i:94059179 original size:14 final size:13
Alignment explanation
Indices: 94059160--94059197 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
94059150 ATTTAATGTT
94059160 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
94059174 TAATTATTAAGGA
1 TAATTATTTAGGA
94059187 TAATTATTTAG
1 TAATTATTTAG
94059198 ATTTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:94062184 original size:12 final size:12
Alignment explanation
Indices: 94062149--94062176 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
94062139 TGAGTTACAT
94062149 GGGCACGGACAC
1 GGGCACGGACAC
94062161 GGGCACGGACAC
1 GGGCACGGACAC
94062173 GGGC
1 GGGC
94062177 TGGGACACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.32, G:0.46, T:0.00
Consensus pattern (12 bp):
GGGCACGGACAC
Found at i:94062301 original size:21 final size:21
Alignment explanation
Indices: 94062261--94062302 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
94062251 CCTTACAGTA
* * *
94062261 TAAATTTTTCTAACTTTTTCC
1 TAAACTTTTCTAAATGTTTCC
94062282 TAAACTTTTCTAAATGTTTCC
1 TAAACTTTTCTAAATGTTTCC
94062303 AATTTAGTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.02, T:0.52
Consensus pattern (21 bp):
TAAACTTTTCTAAATGTTTCC
Found at i:94066260 original size:22 final size:22
Alignment explanation
Indices: 94066218--94066260 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
94066208 ATACTCTTCA
* *
94066218 TACTTTTAAATTTTAGTATTTT
1 TACTTTTAAATTTAAGAATTTT
94066240 TACTTTT-AATTCTAAGAATTT
1 TACTTTTAAATT-TAAGAATTT
94066261 AACCCCTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (22 bp):
TACTTTTAAATTTAAGAATTTT
Found at i:94070822 original size:15 final size:16
Alignment explanation
Indices: 94070788--94070825 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
94070778 AAGGAAAAGG
94070788 AAAGAAATTTGCTCAA
1 AAAGAAATTTGCTCAA
94070804 AAAGAAATATTG-T-AA
1 AAAGAAAT-TTGCTCAA
94070819 AAAGAAA
1 AAAGAAA
94070826 AATTTTCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 9 0.43
17 3 0.14
ACGTcount: A:0.61, C:0.05, G:0.13, T:0.21
Consensus pattern (16 bp):
AAAGAAATTTGCTCAA
Found at i:94077587 original size:23 final size:22
Alignment explanation
Indices: 94077542--94077587 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
94077532 CAACCAATCC
*
94077542 AATTCAACATATTTTCAAGATA
1 AATTCAACATATTTTCAAAATA
94077564 AATTCATACATATTTAT-AAAATA
1 AATTCA-ACATATTT-TCAAAATA
94077587 A
1 A
94077588 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (22 bp):
AATTCAACATATTTTCAAAATA
Found at i:94082117 original size:138 final size:135
Alignment explanation
Indices: 94081820--94082236 Score: 599
Period size: 138 Copynumber: 3.1 Consensus size: 135
94081810 GAGAATATAG
94081820 ATATAATTAATATATGAATTTGATTCATACAAAATATTAA-TTATATA-TTA-CTGAATTTATTA
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTATATATTTATC-GAATTTATTA
* * * * * * *
94081882 ATATATATGGTAATATTAATTAATTTTGGCCAAAATAT-AAAGACATGGAAATTATTATTCTTTT
65 ATATAAATAGTTATA-TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTT
*
94081946 GGAAATA
129 GGAAAGA
* *
94081953 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATATTTTATCAAATTTTTT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATT-TATATA-TTTATCGAATTTATT
*
94082018 AATATAAATAGTTATACTAATTAATTTCGGTCAAAATATAAAAGACTTGAAAATTAATATTCTTT
64 AATATAAATAGTTATA-TAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTT
94082083 TGGAAAGA
128 TGGAAAGA
*
94082091 ATATAATTAATATATGAATTTCATTCATACAAAATATTAATTGTATATATATTATCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATT-TATATAT-TTATCGAATTTATT
* * *
94082156 AATATAAACAATTATATGAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
64 AATATAAATAGTTATAT-AATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTT
94082221 TGGAAAGA
128 TGGAAAGA
94082229 ATATAATT
1 ATATAATT
94082237 CTTTTTTCTA
Statistics
Matches: 256, Mismatches: 20, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
133 40 0.16
134 1 0.00
135 6 0.02
137 45 0.18
138 164 0.64
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (135 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTATATATTTATCGAATTTATTAA
TATAAATAGTTATATAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGG
AAAGA
Found at i:94082360 original size:74 final size:76
Alignment explanation
Indices: 94082212--94082360 Score: 248
Period size: 74 Copynumber: 2.0 Consensus size: 76
94082202 ATGAAAATTA
* * *
94082212 ATATTCTTTTGGAAAGAATATAATTCTTTTTTCTAACTTTCCATTTGTCTTTCTCTATTAATAAG
1 ATATTATTTTGGAAAGAATATAATTCTATTTTCTAACTTTCCATTTGTCCTTCTCTATTAATAAG
94082277 AGAATAATCCC
66 AGAATAATCCC
*
94082288 ATATTATTTTGGAAAGAATATAATTC-ATTTTCTAACTTTTCATTTG-CCTTCTCTATTAATAAG
1 ATATTATTTTGGAAAGAATATAATTCTATTTTCTAACTTTCCATTTGTCCTTCTCTATTAATAAG
94082351 AGAATAATCC
66 AGAATAATCC
94082361 TAATTTTTCT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
74 26 0.38
75 18 0.26
76 25 0.36
ACGTcount: A:0.32, C:0.15, G:0.08, T:0.45
Consensus pattern (76 bp):
ATATTATTTTGGAAAGAATATAATTCTATTTTCTAACTTTCCATTTGTCCTTCTCTATTAATAAG
AGAATAATCCC
Found at i:94087273 original size:17 final size:18
Alignment explanation
Indices: 94087246--94087279 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
94087236 TTGTTCGATT
*
94087246 TTTTTGATGATTTTTACG
1 TTTTTGATGATTGTTACG
94087264 TTTTTG-TGATTGTTAC
1 TTTTTGATGATTGTTAC
94087280 TTAGTAATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.06, G:0.18, T:0.62
Consensus pattern (18 bp):
TTTTTGATGATTGTTACG
Found at i:94088148 original size:43 final size:43
Alignment explanation
Indices: 94087985--94088149 Score: 126
Period size: 43 Copynumber: 3.8 Consensus size: 43
94087975 TTCTGATATG
* * **
94087985 TGATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
1 TGATTACATGTAAGACCACGTTTGGGACGTTGGCATCGA-TACA
* * * **
94088029 -GATTTA-AGTGTAAGACCATGTTTGGGACATCGGCATCG-TATT
1 TGA-TTACA-TGTAAGACCACGTTTGGGACGTTGGCATCGATACA
* * *
94088071 TGATTTCGTGTAAGACC-C-TATCTAGGACAG-TGGCATCGATACA
1 TGATTACATGTAAGACCACGT-T-TGGGAC-GTTGGCATCGATACA
94088114 TGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 TGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
94088150 TGTATGAGCT
Statistics
Matches: 91, Mismatches: 19, Indels: 23
0.68 0.14 0.17
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 25 0.27
43 33 0.36
44 30 0.33
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
TGATTACATGTAAGACCACGTTTGGGACGTTGGCATCGATACA
Found at i:94089775 original size:56 final size:56
Alignment explanation
Indices: 94089686--94089793 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
94089676 ATGGCATCGA
* * * *
94089686 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATTCCGG
1 TATATATGTGCAAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATTCCGG
* *
94089742 TATATATGTGCAAGTAAGACTACGTCTAGTACGTTGGCATCGATATGTGATT
1 TATATATGTGCAAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
94089794 ACATGTAAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
TATATATGTGCAAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATTCCGG
Found at i:94093281 original size:54 final size:55
Alignment explanation
Indices: 94093175--94093282 Score: 191
Period size: 55 Copynumber: 2.0 Consensus size: 55
94093165 GGCTTTGCGA
94093175 GACCGAGTTTTTCTTCCTGAGGTGCACCGGTTTTGTTTGTGAAAAAGAAAGACGG
1 GACCGAGTTTTTCTTCCTGAGGTGCACCGGTTTTGTTTGTGAAAAAGAAAGACGG
* *
94093230 GACCGATTTTTTCTTCTTGAGGTGCACCGGTTTTGTTTGTG-AAAAGAAAGACG
1 GACCGAGTTTTTCTTCCTGAGGTGCACCGGTTTTGTTTGTGAAAAAGAAAGACG
94093283 AAACTATGAG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
54 12 0.24
55 39 0.76
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (55 bp):
GACCGAGTTTTTCTTCCTGAGGTGCACCGGTTTTGTTTGTGAAAAAGAAAGACGG
Found at i:94097797 original size:33 final size:33
Alignment explanation
Indices: 94097755--94097821 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
94097745 TCAAAGATAG
94097755 ATTTGAGATCAGGTTACTATCAGTTACGAGTAA
1 ATTTGAGATCAGGTTACTATCAGTTACGAGTAA
*
94097788 ATTTGAGATCAGGTTACTATCAGTTGCGAGTAA
1 ATTTGAGATCAGGTTACTATCAGTTACGAGTAA
94097821 A
1 A
94097822 AGATTTAGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (33 bp):
ATTTGAGATCAGGTTACTATCAGTTACGAGTAA
Found at i:94102234 original size:50 final size:49
Alignment explanation
Indices: 94102163--94102407 Score: 316
Period size: 50 Copynumber: 4.9 Consensus size: 49
94102153 ACATTAAAGT
*
94102163 CGATGCCATGCCCCAGACATGGTCTTACACT-GACTCTCGAATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-AATATCGAGGC
* * *
94102213 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTATCG-GCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-ATATCGAG-GC
* * *
94102263 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-ATATCGAGGC
*
94102313 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ATATCTTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATATC--GAGGC
*
94102363 CGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCAAATATC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-AATATC
94102408 CCTAGCATCA
Statistics
Matches: 172, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 159 0.92
51 2 0.01
52 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATATCGAGGC
Found at i:94102619 original size:29 final size:29
Alignment explanation
Indices: 94102577--94102660 Score: 159
Period size: 29 Copynumber: 2.9 Consensus size: 29
94102567 TCTTACTCGT
94102577 TCATATTCCATCAAATTTCCAATGTAATA
1 TCATATTCCATCAAATTTCCAATGTAATA
*
94102606 TCATATTCCATCAAATTTCCAATATAATA
1 TCATATTCCATCAAATTTCCAATGTAATA
94102635 TCATATTCCATCAAATTTCCAATGTA
1 TCATATTCCATCAAATTTCCAATGTA
94102661 TTCAATCATC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.38
Consensus pattern (29 bp):
TCATATTCCATCAAATTTCCAATGTAATA
Found at i:94107447 original size:12 final size:12
Alignment explanation
Indices: 94107430--94107454 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94107420 ATAGAGATTA
94107430 TATCATATTAAC
1 TATCATATTAAC
94107442 TATCATATTAAC
1 TATCATATTAAC
94107454 T
1 T
94107455 TCTACAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (12 bp):
TATCATATTAAC
Found at i:94114540 original size:30 final size:30
Alignment explanation
Indices: 94114506--94114569 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
94114496 ATAATAAATT
*
94114506 AATAATAAATATCTTATTAAAT-ATTAATAA
1 AATAATAAATATCTAATTAAATAATT-ATAA
** *
94114536 AATAATATTTTTCTAATTAAATAATTATAA
1 AATAATAAATATCTAATTAAATAATTATAA
94114566 AATA
1 AATA
94114570 TCATCAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 26 0.90
31 3 0.10
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAATAAATATCTAATTAAATAATTATAA
Found at i:94117259 original size:90 final size:90
Alignment explanation
Indices: 94117165--94117344 Score: 306
Period size: 90 Copynumber: 2.0 Consensus size: 90
94117155 AGCATGTTAG
*
94117165 TCATGTAATTCACATTAATAACAATAAACAAGTATAAACTTATCACTAATCAAATTTCCTTATTC
1 TCATGTAATTCACATGAATAACAATAAACAAGTATAAACTTATCACTAATCAAATTTCCTTATTC
94117230 ATGTACTTTCCACATCATGTATTCA
66 ATGTACTTTCCACATCATGTATTCA
* * * *
94117255 TCATGTAATTCACATGAATAACAATAAACAAGTATGAACTTATCATTATTCACATTTCCTTATTC
1 TCATGTAATTCACATGAATAACAATAAACAAGTATAAACTTATCACTAATCAAATTTCCTTATTC
*
94117320 ATGTACTTTCCACATCTTGTATTCA
66 ATGTACTTTCCACATCATGTATTCA
94117345 AACTTCATAT
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.38
Consensus pattern (90 bp):
TCATGTAATTCACATGAATAACAATAAACAAGTATAAACTTATCACTAATCAAATTTCCTTATTC
ATGTACTTTCCACATCATGTATTCA
Found at i:94117648 original size:24 final size:25
Alignment explanation
Indices: 94117559--94117657 Score: 69
Period size: 24 Copynumber: 4.0 Consensus size: 25
94117549 TTCCAAGCCA
* * *
94117559 AATAACAAAAAGCTCATATGAACTT
1 AATAACAGAAAGCTCATAAGAGCTT
* * **
94117584 -GTAAC-GAGAAGCTTATCCGAGCTT
1 AATAACAGA-AAGCTCATAAGAGCTT
*
94117608 AATAACAGGAAGCTCATAAGAGCTT
1 AATAACAGAAAGCTCATAAGAGCTT
* **
94117633 AA-ATCAGAAAGCTCATGTGAGCTT
1 AATAACAGAAAGCTCATAAGAGCTT
94117657 A
1 A
94117658 GCGGGTAACT
Statistics
Matches: 56, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
23 1 0.02
24 35 0.62
25 19 0.34
26 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.23
Consensus pattern (25 bp):
AATAACAGAAAGCTCATAAGAGCTT
Found at i:94118606 original size:29 final size:30
Alignment explanation
Indices: 94118555--94118613 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
94118545 TTCGATTGAC
* *
94118555 CTAGGGGTAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTGTCAAAGT
* *
94118585 CTAGGGGCAAATTGGTCA-TTTGTCCAAGT
1 CTAGGGGCAAAATGGTCATTTTGTCAAAGT
94118614 ATGAATTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTGTCAAAGT
Found at i:94119066 original size:46 final size:46
Alignment explanation
Indices: 94118919--94119373 Score: 281
Period size: 46 Copynumber: 9.7 Consensus size: 46
94118909 GTTATTGTGG
* *
94118919 GCTAGTGTAAGCCATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGA
* * ** * * *
94118965 GCCAGTGTAAGACAATGTCTGGGGCATGGCATCGGCATTGA-GACGAGT
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-TACATTATGAGA
*
94119013 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCTACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGA
* * ** * *
94119059 GCCAGTGTAAGACCATGTCTGGGACGTGGCATCGGCATTGA-GATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACATTATGAGA
* * *
94119107 GCTAGTGCAAGACATG-CATGGGACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTC-TGGGACATGCATCGGCTACATTATGAGA
** *
94119153 GCTAGTGTAAGACCATGTCTGGGATGTTGCAT---CAACATTGA-GACGA
1 GCTAGTGTAAGA-CATGTCTGGGA-CATGCATCGGCTACATT-ATGA-GA
* * *
94119199 GTGCTAGTGTAAGACATGTCTGGGACATACATCGACCT-CGA-GATGTA-A
1 --GCTAGTGTAAGACATGTCTGGGACATGCATCG-GCTAC-ATTATG-AGA
* * * * *
94119247 GCCAGTGTAATACATGTTTGGGACATGCATCGGCTACGA-GATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-ATTATGAGA
* * * *
94119292 TC-AGTGTAAGGCTATGTCCGGGACATGGCATCGGCATAGA-TATGCTAGA
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-TACATTATG--AGA
*
94119341 GCTTGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
94119374 AGTACCTTAC
Statistics
Matches: 316, Mismatches: 60, Indels: 62
0.72 0.14 0.14
Matches are distributed among these distances:
44 8 0.03
45 25 0.08
46 112 0.35
47 68 0.22
48 68 0.22
49 6 0.02
50 28 0.09
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGA
Found at i:94119080 original size:94 final size:94
Alignment explanation
Indices: 94118919--94119373 Score: 489
Period size: 94 Copynumber: 4.8 Consensus size: 94
94118909 GTTATTGTGG
* * *
94118919 GCTAGTGTAAGCCATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACAATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTC
*
94118984 TGGGGCATGGCATCGGCATTGAGACGAGT
66 TGGGACATGGCATCGGCATTGAGACGAGT
*
94119013 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTC
* *
94119078 TGGGACGTGGCATCGGCATTGAGATGAGT
66 TGGGACATGGCATCGGCATTGAGACGAGT
* * * *
94119107 GCTAGTGCAAGACATG-CATGGGACATGCATCAGCCACATTATGAGAGCTAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTC-TGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGT
** * **
94119171 CTGGGATGTTGCATCAACATTGAGACGAGT
65 CTGGGACATGGCATCGGCATTGAGACGAGT
* * * *
94119201 GCTAGTGTAAGACATGTCTGGGACATACATCGACCT-CGA-GATGTA-AGCCAGTGTAATA-CAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG-GCTAC-ATTATG-AGAGCCAGTGTAAGACCAT
* * * *
94119262 GTTTGGGACAT-GCATCGGC-TACGAGATGTGT
63 GTCTGGGACATGGCATCGGCAT-TGAGACGAGT
* * * **
94119293 -C-AGTGTAAGGCTATGTCCGGGACATGGCATCGGCATAGA-TATGCTAGAGCTTGTGTAAGACC
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-TACATTATG--AGAGCCAGTGTAAGACC
94119355 ATGTCTGGGACATGGCATC
61 ATGTCTGGGACATGGCATC
94119374 AGTACCTTAC
Statistics
Matches: 304, Mismatches: 43, Indels: 26
0.82 0.12 0.07
Matches are distributed among these distances:
90 9 0.03
91 15 0.05
92 23 0.08
93 13 0.04
94 222 0.73
95 17 0.06
96 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATTGAGACGAGT
Done.