Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 285 of 316
Found at i:94523821 original size:25 final size:25
Alignment explanation
Indices: 94523682--94523860 Score: 81
Period size: 25 Copynumber: 7.2 Consensus size: 25
94523672 AGCTTATAAA
* *
94523682 AGCCA-TAATCAGGAAGCTCATG-CG
1 AGCCATTAATCAGGAAGCTC-CGAAG
* * *
94523706 AGCCAATAA-CAGGTAGCTCTGAAG
1 AGCCATTAATCAGGAAGCTCCGAAG
* * *
94523730 AGCCATTAATC-GGAAAGCCCCAAAT
1 AGCCATTAATCAGG-AAGCTCCGAAG
**
94523755 AGCCA-TATATCAGGAATAT-CG-AG
1 AGCCATTA-ATCAGGAAGCTCCGAAG
* *
94523778 CAAGCCA-T-ATCAAGTAGCTCCGAAG
1 --AGCCATTAATCAGGAAGCTCCGAAG
*
94523803 AGCCATTAATCAGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTC-CGAAG
* *
94523829 AGCCTTTACTC-GAGAAGCTCACGAAG
1 AGCCATTAATCAG-GAAGCTC-CGAAG
94523855 AGCCAT
1 AGCCAT
94523861 ATATCGGAAT
Statistics
Matches: 117, Mismatches: 24, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
23 15 0.13
24 31 0.26
25 39 0.33
26 32 0.27
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (25 bp):
AGCCATTAATCAGGAAGCTCCGAAG
Found at i:94523874 original size:26 final size:24
Alignment explanation
Indices: 94523793--94523875 Score: 87
Period size: 26 Copynumber: 3.2 Consensus size: 24
94523783 CATATCAAGT
94523793 AGCTC-CGAAGAGCCATTAATCAGGA
1 AGCTCACGAAGAGCCATT-ATC-GGA
* *
94523818 AGCTCACAAAGAGCCTTTACTCGAGA
1 AGCTCACGAAGAGCCATTA-TCG-GA
94523844 AGCTCACGAAGAGCCATATATCGGA
1 AGCTCACGAAGAGCCAT-TATCGGA
94523869 ATGCTCA
1 A-GCTCA
94523876 TAAAAGCTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
25 10 0.20
26 37 0.76
27 2 0.04
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (24 bp):
AGCTCACGAAGAGCCATTATCGGA
Found at i:94525634 original size:8 final size:8
Alignment explanation
Indices: 94525609--94525638 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
94525599 ATTGGTTAAA
94525609 AAAATAAT
1 AAAATAAT
94525617 AAAATGAAT
1 AAAAT-AAT
94525626 AAAATAAT
1 AAAATAAT
94525634 AAAAT
1 AAAAT
94525639 GCATGGTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (8 bp):
AAAATAAT
Found at i:94525937 original size:12 final size:12
Alignment explanation
Indices: 94525920--94525952 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
94525910 CAACCCGCCC
94525920 ATATTAATTTTT
1 ATATTAATTTTT
94525932 ATATT-ATTTTT
1 ATATTAATTTTT
94525943 ATA-TAATTTT
1 ATATTAATTTT
94525953 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:94526193 original size:22 final size:22
Alignment explanation
Indices: 94526168--94526210 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
94526158 TATCCAAACA
94526168 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
94526190 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
94526211 AAAAGGGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:94527218 original size:43 final size:43
Alignment explanation
Indices: 94527150--94527296 Score: 140
Period size: 43 Copynumber: 3.4 Consensus size: 43
94527140 ATCAATATGT
* *
94527150 GATTACATGTAAGACCCTGTATGGGACAGTGGCATTGCATTGC
1 GATTACATGTAAGACCATGTGTGGGACAGTGGCATTGCATTGC
* * * * *
94527193 GATTACGTGTAAGACCATGTGTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTGTGGGACAGTGGCATTG-CATTGC
* * *
94527236 GACTT-CGTGTAAGACCATGTGTGAGACAGTGGCA-T-CTATATGT
1 GA-TTACATGTAAGACCATGTGTGGGACAGTGGCATTGC-AT-TGC
94527279 GATTACATGTAAGACCAT
1 GATTACATGTAAGACCAT
94527297 ATCTAGGATA
Statistics
Matches: 84, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 3 0.04
43 76 0.90
44 4 0.05
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTGTGGGACAGTGGCATTGCATTGC
Found at i:94529443 original size:39 final size:40
Alignment explanation
Indices: 94529348--94529500 Score: 120
Period size: 39 Copynumber: 3.9 Consensus size: 40
94529338 ATTTGAAACC
** * *
94529348 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* * * *
94529387 AATACTAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGCGGGACCTTAAGCCCGGACAT
* * * *
94529426 ATTTCCAGCACGTAGCCTGC-GGACCTTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* *
94529465 AATTCCAGCACATAGCCTGC-GGACCCTAAGTCCGGA
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGA
94529501 TATACATCAC
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
38 16 0.17
39 76 0.83
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
Found at i:94529501 original size:39 final size:39
Alignment explanation
Indices: 94529418--94529504 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
94529408 GGACTTTAGC
* * * *
94529418 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
94529457 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
94529496 CCGGATATA
1 CCGGATATA
94529505 CATCACTGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:94533135 original size:26 final size:25
Alignment explanation
Indices: 94533106--94533193 Score: 68
Period size: 25 Copynumber: 3.5 Consensus size: 25
94533096 CGAGCATGTA
*
94533106 AACGGGAAGCTCTTTTGAAGCCATAT
1 AACGGGAAGCTCTTGTG-AGCCATAT
* * **
94533132 AACGGGAAACTCATGTGAGCTGTAT
1 AACGGGAAGCTCTTGTGAGCCATAT
* ** *
94533157 AACAGGAAGCTCTTACGAGCCATTT
1 AACGGGAAGCTCTTGTGAGCCATAT
* *
94533182 ATCGGAAAGCTC
1 AACGGGAAGCTC
94533194 AAGAGAGCCA
Statistics
Matches: 46, Mismatches: 16, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
25 32 0.70
26 14 0.30
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (25 bp):
AACGGGAAGCTCTTGTGAGCCATAT
Found at i:94534629 original size:26 final size:26
Alignment explanation
Indices: 94534600--94534649 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
94534590 AAAAGAAGAC
*
94534600 ATGCCTTCACCATTTGAAATATGACT
1 ATGCCTTCACCATATGAAATATGACT
94534626 ATGCCTTCACCATATGAAATATGA
1 ATGCCTTCACCATATGAAATATGA
94534650 ATTAGTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (26 bp):
ATGCCTTCACCATATGAAATATGACT
Found at i:94547083 original size:19 final size:19
Alignment explanation
Indices: 94547054--94547102 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
94547044 ATTTATCATT
94547054 TAAAT-ATATAATAATATA
1 TAAATAATATAATAATATA
94547072 TAAATAATATAATAATATA
1 TAAATAATATAATAATATA
*
94547091 CAAATAAATATA
1 TAAAT-AATATA
94547103 TAAAGAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 5 0.18
19 17 0.61
20 6 0.21
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAATAATATAATAATATA
Found at i:94547157 original size:14 final size:15
Alignment explanation
Indices: 94547134--94547170 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
94547124 ATAACTAATT
94547134 ATATACTTATACTTA
1 ATATACTTATACTTA
94547149 ATATA-TTATACTTA
1 ATATACTTATACTTA
94547163 ATAATACT
1 AT-ATACT
94547171 AATTATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 11 0.55
15 8 0.40
16 1 0.05
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (15 bp):
ATATACTTATACTTA
Found at i:94556808 original size:33 final size:33
Alignment explanation
Indices: 94556771--94556894 Score: 194
Period size: 33 Copynumber: 3.8 Consensus size: 33
94556761 CTTTGTTTCA
94556771 GGTTGCTGGACAGGAGCTAGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTAGAATGTGAGTGTTT
* *
94556804 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTAGAATGTGAGTGTTT
* *
94556837 GGTTGCTGGACAAGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTAGAATGTGAGTGTTT
* *
94556870 GGTTGCTGAACAGTAGCTAGAATGT
1 GGTTGCTGGACAGGAGCTAGAATGT
94556895 CAAGAAGAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 83 1.00
ACGTcount: A:0.21, C:0.10, G:0.40, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTAGAATGTGAGTGTTT
Found at i:94559807 original size:31 final size:31
Alignment explanation
Indices: 94559769--94559915 Score: 231
Period size: 31 Copynumber: 4.7 Consensus size: 31
94559759 TCACAAAGAC
*
94559769 AAATTAGTTACACTACAAACAAGCTATCGAT
1 AAATTAGTTACACTACAAACAAGTTATCGAT
*
94559800 AAATTAGTTGCACTACAAACAAGTTATCGAT
1 AAATTAGTTACACTACAAACAAGTTATCGAT
* *
94559831 AAATCAGTTACACTACAAACAAGTTGTCGAT
1 AAATTAGTTACACTACAAACAAGTTATCGAT
*
94559862 AAATTAGTTACACTGCAAACAAGTTATCGAT
1 AAATTAGTTACACTACAAACAAGTTATCGAT
* *
94559893 AAATCAGTTACACTACATACAAG
1 AAATTAGTTACACTACAAACAAG
94559916 CTGTCCATCA
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 105 1.00
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.27
Consensus pattern (31 bp):
AAATTAGTTACACTACAAACAAGTTATCGAT
Found at i:94563511 original size:94 final size:94
Alignment explanation
Indices: 94563347--94563551 Score: 342
Period size: 94 Copynumber: 2.2 Consensus size: 94
94563337 ACACACAAAA
* *
94563347 GAAAAAAAG--AGCAAGAATGGCATTGCAACACTAAAGAAGTATAAACAAGACAAAGTCCATAAA
1 GAAAAAAAGAAAGCAAGAATGGCATTGCAACACTAAAGAAGTAAAAACAAGACAAAGCCCATAAA
*
94563410 AACAAACATTGAAAGCAAGGGAATAAGTT
66 AACAAACATAGAAAGCAAGGGAATAAGTT
* *
94563439 GAAAAAAAGAAAGCAAGAATGGCATTGCAACACTAAAGAAGTAAAAACGAGGCAAAGCCCATAAA
1 GAAAAAAAGAAAGCAAGAATGGCATTGCAACACTAAAGAAGTAAAAACAAGACAAAGCCCATAAA
*
94563504 AAGAAACATAGAAAGCAAGGGAATAAGTT
66 AACAAACATAGAAAGCAAGGGAATAAGTT
94563533 GAAAAAAAGAAAGCAAGAA
1 GAAAAAAAGAAAGCAAGAA
94563552 AATCTAAAAC
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 9 0.09
94 96 0.91
ACGTcount: A:0.57, C:0.12, G:0.20, T:0.11
Consensus pattern (94 bp):
GAAAAAAAGAAAGCAAGAATGGCATTGCAACACTAAAGAAGTAAAAACAAGACAAAGCCCATAAA
AACAAACATAGAAAGCAAGGGAATAAGTT
Found at i:94584284 original size:20 final size:20
Alignment explanation
Indices: 94584259--94584301 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
94584249 TGTAATGGGA
94584259 TTTGGTTTAACCATTTTATG
1 TTTGGTTTAACCATTTTATG
94584279 TTTGGTTTAACCATTTTATG
1 TTTGGTTTAACCATTTTATG
94584299 TTT
1 TTT
94584302 TCTTCCCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.09, G:0.14, T:0.58
Consensus pattern (20 bp):
TTTGGTTTAACCATTTTATG
Found at i:94586904 original size:34 final size:34
Alignment explanation
Indices: 94586861--94586928 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
94586851 GTTTTCCAAA
* *
94586861 TCATGCTTACTAAAATACTAAGTAGCTCATTTAC
1 TCATGCTTACTAAAATACCAAGCAGCTCATTTAC
94586895 TCATGCTTACTAAAATACCAAGCAGCTCATTTAC
1 TCATGCTTACTAAAATACCAAGCAGCTCATTTAC
94586929 CAATCATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (34 bp):
TCATGCTTACTAAAATACCAAGCAGCTCATTTAC
Found at i:94588488 original size:27 final size:27
Alignment explanation
Indices: 94588450--94588548 Score: 171
Period size: 27 Copynumber: 3.7 Consensus size: 27
94588440 AGTAGTCTAT
*
94588450 GACCCTCTGGGAATTGGGACTGCCCAC
1 GACCCTCTGGGAATTGGGACTACCCAC
94588477 GACCCTCTGGGAATTGGGACTACCCAC
1 GACCCTCTGGGAATTGGGACTACCCAC
*
94588504 GACCCTCTGGGAATTGGGATTACCCAC
1 GACCCTCTGGGAATTGGGACTACCCAC
*
94588531 AACCCTCTGGGAATTGGG
1 GACCCTCTGGGAATTGGG
94588549 GAGATCTAAA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (27 bp):
GACCCTCTGGGAATTGGGACTACCCAC
Found at i:94591445 original size:22 final size:21
Alignment explanation
Indices: 94591415--94591478 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 21
94591405 TACAAATTAA
94591415 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
94591437 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
94591458 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
94591477 AT
1 AT
94591479 ATAAGATTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 17 0.44
21 10 0.26
22 12 0.31
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:94591467 original size:19 final size:19
Alignment explanation
Indices: 94591432--94591529 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
94591422 AGATTACAAG
94591432 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
94591453 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
94591472 ATCATATATAAGATTG--T
1 ATCATATCTAAGATTGCAT
94591489 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
94591508 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
94591527 ATC
1 ATC
94591530 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:94591494 original size:36 final size:37
Alignment explanation
Indices: 94591443--94591529 Score: 140
Period size: 36 Copynumber: 2.3 Consensus size: 37
94591433 TCATATCTTC
94591443 AAGATTGCATATCATATCTAAGATTGCATATCATATAT
1 AAGATTG-ATATCATATCTAAGATTGCATATCATATAT
*
94591481 AAGATTG-TATCATATCTAAGATTGCATATCATATCT
1 AAGATTGATATCATATCTAAGATTGCATATCATATAT
94591517 AAGATTGCATATC
1 AAGATTG-ATATC
94591530 CTTAAAGATT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
36 35 0.76
38 11 0.24
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (37 bp):
AAGATTGATATCATATCTAAGATTGCATATCATATAT
Found at i:94591538 original size:36 final size:35
Alignment explanation
Indices: 94591432--94591539 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
94591422 AGATTACAAG
*
94591432 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTGCATATC--CT-TAAGATTGCAT
*
94591472 ATCATATATAAGATTGTATCATAT-C-TAAGATTGCAT
1 ATCATATCTAAGATTG---CATATCCTTAAGATTGCAT
94591508 ATCATATCTAAGATTGCATATCCTTAAAGATT
1 ATCATATCTAAGATTGCATATCCTT-AAGATT
94591540 ATATTTCCAT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 5 0.08
34 1 0.02
35 1 0.02
36 32 0.54
38 7 0.12
39 1 0.02
40 7 0.12
41 5 0.08
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (35 bp):
ATCATATCTAAGATTGCATATCCTTAAGATTGCAT
Found at i:94592237 original size:132 final size:131
Alignment explanation
Indices: 94592027--94592358 Score: 508
Period size: 132 Copynumber: 2.5 Consensus size: 131
94592017 CAAGGATGCT
*
94592027 AAATCATCTTGGATCTGCTTCAATGTGAAAAGATCCGAAGGTCAGATCTGCTATGTCTTCGATTT
1 AAATCATCTTGGATCTGCTTC-ATGT-AAAACATCCGAAGGTCAGATCTGCTATGTCTTCGATTT
* *
94592092 GCTCTTCGTCGAATATGGAGATGCCAAATCTATTTAC-TCAATTTGTTCTCTAACAATACAGATA
64 GCTCTCCGTCGAATATGGAGATGCCAAATCTATTT-CTTCAATTTGTTCTCTAACAATACAGAGA
94592156 TGTC
128 TGTC
* * *
94592160 AAATCATCTTGGATCTGCTTCGATGTAAAACATCCAAAGGTCAGATCTGTTATGTCTTCGATCTG
1 AAATCATCTTGGATCTGCTTC-ATGTAAAACATCCGAAGGTCAGATCTGCTATGTCTTCGATTTG
* * *
94592225 CTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATG
65 CTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCAATTTGTTCTCTAACAATACAGAGATG
94592290 TC
130 TC
94592292 AAATCATCTTGGATCTGCTTCAGTGT-AAACA-CCTGAAGGTCAGATCTGCTATGTCTTCGATTT
1 AAATCATCTTGGATCTGCTTCA-TGTAAAACATCC-GAAGGTCAGATCTGCTATGTCTTCGATTT
94592355 GCTC
64 GCTC
94592359 CTTGTAAACA
Statistics
Matches: 183, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
130 2 0.01
131 37 0.20
132 119 0.65
133 25 0.14
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (131 bp):
AAATCATCTTGGATCTGCTTCATGTAAAACATCCGAAGGTCAGATCTGCTATGTCTTCGATTTGC
TCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCAATTTGTTCTCTAACAATACAGAGATGT
C
Found at i:94592568 original size:220 final size:220
Alignment explanation
Indices: 94592159--94593003 Score: 1460
Period size: 220 Copynumber: 3.8 Consensus size: 220
94592149 ACAGATATGT
*
94592159 CAAATCATCTTGGATCTGCTTCGATGT-AAAACATCCAAAGGTCAGATCTGTTATGTCTTCGATC
1 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATC
94592223 TGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
66 TGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
* * *
94592288 TGTCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGAT
131 TGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCGAT
94592353 TTGCTCCTTGTAAACACAAGAATGC
196 TTGCTCCTTGTAAACACAAGAATGC
* *
94592378 CAAATCATCTTGGATCTACTTCAATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATC
1 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATC
94592443 TGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
66 TGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
**
94592508 TGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTTAGATCTGCTATGTCTTCGAT
131 TGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCGAT
*
94592573 TTGCTCCGTGTAAACACAAGAATGC
196 TTGCTCCTTGTAAACACAAGAATGC
** *
94592598 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTATTATGTTTTCGATC
1 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATC
*
94592663 TGCTC-CCTGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTGACAATACAGAG
66 TGCTCTCC-GTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAG
* *
94592727 ATGCCAAATCATCTTGGATCTACTTCATTGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCAA
130 ATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCGA
94592792 TTTGCTCCTTGTAAACACAAGAATGC
195 TTTGCTCCTTGTAAACACAAGAATGC
* * *
94592818 CAAATTATCTTGGATCTGCTTCGACGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATA
1 CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATC
* *
94592883 TGCTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACAGAGA
66 TGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
* * *
94592948 TGCCAAATCATCTTGGATCTGCTTCAGCGTGAACACCTGAAGGCCAGATCTGCTAT
131 TGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGCCAGATCTGCTAT
94593004 ACTTTAACCT
Statistics
Matches: 592, Mismatches: 31, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
219 27 0.05
220 563 0.95
221 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (220 bp):
CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATC
TGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
TGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGCCAGATCTGCTATGTCTTCGAT
TTGCTCCTTGTAAACACAAGAATGC
Found at i:94592604 original size:87 final size:89
Alignment explanation
Indices: 94592507--94592668 Score: 222
Period size: 89 Copynumber: 1.8 Consensus size: 89
94592497 CAATACAGAG
* * * *
94592507 ATGCCAAATCATCTTGGATCTACTTC-A-GTGTAAACA-CCTGAAGGTTAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC-AAAGGTCAGATCTACTATGTCTT
*
94592569 CGATTTGCTCCGTGTAAACACAAGA
65 CGATCTGCTCCGTGTAAACACAAGA
* * *
94592594 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTATTATGTTTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTACTATGTCTTC
94592659 GATCTGCTCC
66 GATCTGCTCC
94592669 CTGTCGAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 25 0.39
88 1 0.02
89 36 0.56
90 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTACTATGTCTTC
GATCTGCTCCGTGTAAACACAAGA
Found at i:94592828 original size:87 final size:89
Alignment explanation
Indices: 94592727--94592887 Score: 220
Period size: 89 Copynumber: 1.8 Consensus size: 89
94592717 CAATACAGAG
* * *
94592727 ATGCCAAATCATCTTGGATCTACTTC-A-TTGTAAACA-CCTGAAGGCCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTACTTCGACGTGAAAACATCC-AAAGGCCAGATCTGCTATGTCTT
*
94592789 CAATTTGCTCCTTGTAAACACAAGA
65 CAATATGCTCCTTGTAAACACAAGA
* * *
94592814 ATGCCAAATTATCTTGGATCTGCTTCGACGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGACGTGAAAACATCCAAAGGCCAGATCTGCTATGTCTTC
*
94592879 GATATGCTC
66 AATATGCTC
94592888 TCCGTCGAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 36 0.57
90 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGATCTACTTCGACGTGAAAACATCCAAAGGCCAGATCTGCTATGTCTTC
AATATGCTCCTTGTAAACACAAGA
Found at i:94593127 original size:44 final size:44
Alignment explanation
Indices: 94593061--94593162 Score: 161
Period size: 44 Copynumber: 2.3 Consensus size: 44
94593051 ATCTGCTCCA
* *
94593061 CTACTGCTTA-GGGAGATAAGATCCGCAATTTTGACCAGTTACC
1 CTACTGCTTAGGGGAGATAAGATCCGCAAATTTAACCAGTTACC
* *
94593104 CTACTGCTTAGGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGGAGATAAGATCCGCAAATTTAACCAGTTACC
94593148 CTACTGCTTAGGGGA
1 CTACTGCTTAGGGGA
94593163 TTAAGGAGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
43 10 0.19
44 44 0.81
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (44 bp):
CTACTGCTTAGGGGAGATAAGATCCGCAAATTTAACCAGTTACC
Found at i:94599662 original size:19 final size:19
Alignment explanation
Indices: 94599627--94599724 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
94599617 AGATTACAAG
*
94599627 ATCATATCTTCAAGATTGCGT
1 ATCATATC-T-AAGATTGCAT
94599648 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
* *
94599667 ATCATATATAAAATTG--T
1 ATCATATCTAAGATTGCAT
94599684 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
94599703 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
94599722 ATC
1 ATC
94599725 CTTAAAGATT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
17 15 0.21
19 46 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:94599688 original size:36 final size:36
Alignment explanation
Indices: 94599646--94599718 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
94599636 TCAAGATTGC
94599646 GTATCATATCTAAGATTGCATATCATATATAAAATT
1 GTATCATATCTAAGATTGCATATCATATATAAAATT
* *
94599682 GTATCATATCTAAGATTGCATATCATATCTAAGATT
1 GTATCATATCTAAGATTGCATATCATATATAAAATT
94599718 G
1 G
94599719 CATATCCTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.38
Consensus pattern (36 bp):
GTATCATATCTAAGATTGCATATCATATATAAAATT
Found at i:94601119 original size:26 final size:26
Alignment explanation
Indices: 94601090--94601145 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
94601080 TGGTACAAAT
*
94601090 TGATAATGGGTTAGGTGAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94601116 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94601142 TGAT
1 TGAT
94601146 TGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:94606071 original size:18 final size:19
Alignment explanation
Indices: 94606050--94606087 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
94606040 TATATTCTAA
*
94606050 TATTAATT-ATTAAAATAT
1 TATTAATTAATAAAAATAT
*
94606068 TATTACTTAATAAAAATAT
1 TATTAATTAATAAAAATAT
94606087 T
1 T
94606088 TAAAAGCCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTAATTAATAAAAATAT
Found at i:94611097 original size:26 final size:27
Alignment explanation
Indices: 94611038--94611097 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
94611028 AAGTAGCCCT
94611038 GAAGAG-CTATTAATCAGGAAGCTCAC
1 GAAGAGCCTATTAATCAGGAAGCTCAC
*
94611064 AAAGAGCCT-TTAATC-GAGAAGCTCAC
1 GAAGAGCCTATTAATCAG-GAAGCTCAC
94611090 GAAGAGCC
1 GAAGAGCC
94611098 ATATATCGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.03
26 27 0.90
27 2 0.07
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
GAAGAGCCTATTAATCAGGAAGCTCAC
Found at i:94613344 original size:25 final size:25
Alignment explanation
Indices: 94613316--94613399 Score: 60
Period size: 25 Copynumber: 3.4 Consensus size: 25
94613306 ACATGTAAAT
* *
94613316 GGGAAGCTCTTTTGAGCCATATAAC
1 GGGAAGCTCTTATGAGCAATATAAC
* * * *** *
94613341 GGGAAACTCATGTGAGCTGCATAAT
1 GGGAAGCTCTTATGAGCAATATAAC
* * *
94613366 GGGAAGCTCTTACGAGCAATTTATC
1 GGGAAGCTCTTATGAGCAATATAAC
94613391 GGGAAGCTC
1 GGGAAGCTC
94613400 AAGAGAGCCA
Statistics
Matches: 42, Mismatches: 17, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (25 bp):
GGGAAGCTCTTATGAGCAATATAAC
Found at i:94613431 original size:25 final size:25
Alignment explanation
Indices: 94613387--94613438 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
94613377 ACGAGCAATT
94613387 TATCGGGAAGCTCAAGAGAGCCAAA
1 TATCGGGAAGCTCAAGAGAGCCAAA
* *
94613412 TATCGGGATGCTCATA-AGAGCTAAA
1 TATCGGGAAGCTCA-AGAGAGCCAAA
94613437 TA
1 TA
94613439 ATGGAAAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.19
Consensus pattern (25 bp):
TATCGGGAAGCTCAAGAGAGCCAAA
Found at i:94614831 original size:26 final size:26
Alignment explanation
Indices: 94614802--94614855 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
94614792 GAAAAAAGAA
94614802 GACTATGCCCTCACCATATGAAATAT
1 GACTATGCCCTCACCATATGAAATAT
* * *
94614828 GACTATGTCTTCACCATATGCAATAT
1 GACTATGCCCTCACCATATGAAATAT
94614854 GA
1 GA
94614856 ATTAGTAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (26 bp):
GACTATGCCCTCACCATATGAAATAT
Found at i:94615403 original size:11 final size:10
Alignment explanation
Indices: 94615375--94615410 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
94615365 TTTCTTATTT
94615375 CTATTCTTTAG
1 CTATT-TTTAG
94615386 CTATTTTTAG
1 CTATTTTTAG
94615396 CTATTTTTAG
1 CTATTTTTAG
94615406 CTATT
1 CTATT
94615411 CTTCTTGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 20 0.80
11 5 0.20
ACGTcount: A:0.19, C:0.14, G:0.08, T:0.58
Consensus pattern (10 bp):
CTATTTTTAG
Found at i:94620563 original size:17 final size:17
Alignment explanation
Indices: 94620541--94620575 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
94620531 TGTTCTGAGC
*
94620541 ATTATCTTTTTCAGCTA
1 ATTATCTTTTTCAACTA
94620558 ATTATCTTTTTCAACTA
1 ATTATCTTTTTCAACTA
94620575 A
1 A
94620576 CTCCAGGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (17 bp):
ATTATCTTTTTCAACTA
Found at i:94624655 original size:24 final size:24
Alignment explanation
Indices: 94624644--94624699 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 24
94624634 TTATCATTTA
94624644 AATATATAATTTAAATATATTAAT
1 AATATATAATTTAAATATATTAAT
*
94624668 AATATATAA--T-AATATATAAAT
1 AATATATAATTTAAATATATTAAT
94624689 AATATAATAAT
1 AATAT-ATAAT
94624700 ATACAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 15 0.52
22 5 0.17
24 9 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
AATATATAATTTAAATATATTAAT
Found at i:94624657 original size:13 final size:13
Alignment explanation
Indices: 94624639--94624663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94624629 TTTTATTATC
94624639 ATTTAAATATATA
1 ATTTAAATATATA
94624652 ATTTAAATATAT
1 ATTTAAATATAT
94624664 TAATAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTAAATATATA
Found at i:94624671 original size:11 final size:11
Alignment explanation
Indices: 94624657--94624700 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
94624647 ATATAATTTA
94624657 AATATATTAAT
1 AATATATTAAT
94624668 AATATA-TAAT
1 AATATATTAAT
*
94624678 AATATATAAAT
1 AATATATTAAT
*
94624689 AATATAATAAT
1 AATATATTAAT
94624700 A
1 A
94624701 TACAAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 10 0.34
11 19 0.66
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATTAAT
Found at i:94624693 original size:19 final size:20
Alignment explanation
Indices: 94624657--94624714 Score: 82
Period size: 19 Copynumber: 2.9 Consensus size: 20
94624647 ATATAATTTA
*
94624657 AATATATTAATAATATATAAT
1 AATATATAAATAA-ATATAAT
94624678 AATATATAAAT-AATATAAT
1 AATATATAAATAAATATAAT
*
94624697 AATATACAAATAAATATA
1 AATATATAAATAAATATA
94624715 TAAAGAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 17 0.50
20 7 0.21
21 10 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
AATATATAAATAAATATAAT
Found at i:94629469 original size:20 final size:22
Alignment explanation
Indices: 94629439--94629483 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
94629429 TATTCAAACA
*
94629439 AGTGATACTCCACA-CAGGTGG
1 AGTGATACTCCAAAGCAGGTGG
94629460 AGTG-TACTCCAAAGCAGGTGG
1 AGTGATACTCCAAAGCAGGTGG
94629481 AGT
1 AGT
94629484 TTGAGCAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (22 bp):
AGTGATACTCCAAAGCAGGTGG
Found at i:94643171 original size:13 final size:12
Alignment explanation
Indices: 94643146--94643183 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
94643136 CAAACAGACC
94643146 TTTAATT-TCTA
1 TTTAATTGTCTA
94643157 TTTAAATTGTCTA
1 TTT-AATTGTCTA
94643170 TTT-ATTGTCTA
1 TTTAATTGTCTA
94643181 TTT
1 TTT
94643184 TTATAAGGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 14 0.56
12 4 0.16
13 7 0.28
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.63
Consensus pattern (12 bp):
TTTAATTGTCTA
Found at i:94647431 original size:94 final size:93
Alignment explanation
Indices: 94647313--94647515 Score: 320
Period size: 94 Copynumber: 2.2 Consensus size: 93
94647303 ACACAAAAAA
*
94647313 GAAAAAAG--AGCAAGAATGCCATTGCAACACTAAAGAAGTAAAAACAAGACAAAGTCCATAAAA
1 GAAAAAAGAAAGCAAGAATGCCATTGCAACACTAAAGAAGTAAAAACAAGACAAAGCCCATAAAA
* *
94647376 ACAAACATTGGAAGCAAGGGAATAAGTT
66 ACAAACATAGAAAGCAAGGGAATAAGTT
* * *
94647404 GAAAAAAAGAAAGCAAGAATGGCATTGCAACACTAAAGAAGTAAAAACGAGGCAAAGCCCATAAA
1 G-AAAAAAGAAAGCAAGAATGCCATTGCAACACTAAAGAAGTAAAAACAAGACAAAGCCCATAAA
*
94647469 AAGAAACATAGAAAGCAAGGGAATAAGTT
65 AACAAACATAGAAAGCAAGGGAATAAGTT
94647498 GAAAAAAGAAAGCAAGAA
1 GAAAAAAGAAAGCAAGAA
94647516 AATCTAAAAC
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
91 1 0.01
92 7 0.07
93 17 0.17
94 77 0.75
ACGTcount: A:0.56, C:0.13, G:0.20, T:0.11
Consensus pattern (93 bp):
GAAAAAAGAAAGCAAGAATGCCATTGCAACACTAAAGAAGTAAAAACAAGACAAAGCCCATAAAA
ACAAACATAGAAAGCAAGGGAATAAGTT
Found at i:94651358 original size:24 final size:24
Alignment explanation
Indices: 94651331--94651382 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
94651321 TTAGTAAGTC
*
94651331 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
94651355 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
94651379 AAAT
1 AAAT
94651383 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:94651863 original size:16 final size:16
Alignment explanation
Indices: 94651842--94651878 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
94651832 TATTAAGATA
94651842 GAGGACGAATGTATAC
1 GAGGACGAATGTATAC
94651858 GAGGACGAATGTATAC
1 GAGGACGAATGTATAC
94651874 GAGGA
1 GAGGA
94651879 TAATGAATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.11, G:0.35, T:0.16
Consensus pattern (16 bp):
GAGGACGAATGTATAC
Found at i:94656940 original size:31 final size:31
Alignment explanation
Indices: 94656891--94657073 Score: 249
Period size: 31 Copynumber: 5.9 Consensus size: 31
94656881 TCACAAAAAC
94656891 AAATCAGTTACACTACAAACAAGCTGTCGAT
1 AAATCAGTTACACTACAAACAAGCTGTCGAT
* * * ** * *
94656922 AAATTAATTAGACTACAAACAAATTATCGAC
1 AAATCAGTTACACTACAAACAAGCTGTCGAT
94656953 AAATCAGTTACACTACAAACAAGCTGTCGAT
1 AAATCAGTTACACTACAAACAAGCTGTCGAT
* * *
94656984 AAATCAGTTACACTACAAACAAGTTATCAAT
1 AAATCAGTTACACTACAAACAAGCTGTCGAT
* *
94657015 AAATCAATTACACTACAAACAAGTTGTCGAT
1 AAATCAGTTACACTACAAACAAGCTGTCGAT
*
94657046 AAATCAGTTACACTACAAACAATCTGTC
1 AAATCAGTTACACTACAAACAAGCTGTC
94657074 AATCAATCCA
Statistics
Matches: 129, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 129 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.25
Consensus pattern (31 bp):
AAATCAGTTACACTACAAACAAGCTGTCGAT
Found at i:94656986 original size:62 final size:62
Alignment explanation
Indices: 94656888--94657067 Score: 288
Period size: 62 Copynumber: 2.9 Consensus size: 62
94656878 CACTCACAAA
* * *
94656888 AACAAATCAGTTACACTACAAACAAGCTGTCGATAAATTAATTAGACTACAAACAAATTATC
1 AACAAATCAGTTACACTACAAACAAGCTGTCGATAAATCAGTTACACTACAAACAAATTATC
* *
94656950 GACAAATCAGTTACACTACAAACAAGCTGTCGATAAATCAGTTACACTACAAACAAGTTATC
1 AACAAATCAGTTACACTACAAACAAGCTGTCGATAAATCAGTTACACTACAAACAAATTATC
* * *
94657012 AATAAATCAATTACACTACAAACAAGTTGTCGATAAATCAGTTACACTACAAACAA
1 AACAAATCAGTTACACTACAAACAAGCTGTCGATAAATCAGTTACACTACAAACAA
94657068 TCTGTCAATC
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.47, C:0.21, G:0.09, T:0.23
Consensus pattern (62 bp):
AACAAATCAGTTACACTACAAACAAGCTGTCGATAAATCAGTTACACTACAAACAAATTATC
Found at i:94657050 original size:93 final size:93
Alignment explanation
Indices: 94656891--94657073 Score: 285
Period size: 93 Copynumber: 2.0 Consensus size: 93
94656881 TCACAAAAAC
* * * *
94656891 AAATCAGTTACACTACAAACAAGCTGTCGATAAATTAATTAGACTACAAACAAATTATCGACAAA
1 AAATCAGTTACACTACAAACAAGCTATCAATAAATCAATTACACTACAAACAAATTATCGACAAA
94656956 TCAGTTACACTACAAACAAGCTGTCGAT
66 TCAGTTACACTACAAACAAGCTGTCGAT
* * * *
94656984 AAATCAGTTACACTACAAACAAGTTATCAATAAATCAATTACACTACAAACAAGTTGTCGATAAA
1 AAATCAGTTACACTACAAACAAGCTATCAATAAATCAATTACACTACAAACAAATTATCGACAAA
*
94657049 TCAGTTACACTACAAACAATCTGTC
66 TCAGTTACACTACAAACAAGCTGTC
94657074 AATCAATCCA
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 81 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.25
Consensus pattern (93 bp):
AAATCAGTTACACTACAAACAAGCTATCAATAAATCAATTACACTACAAACAAATTATCGACAAA
TCAGTTACACTACAAACAAGCTGTCGAT
Found at i:94661138 original size:22 final size:23
Alignment explanation
Indices: 94661093--94661138 Score: 58
Period size: 26 Copynumber: 1.9 Consensus size: 23
94661083 ACTATCGGTT
94661093 TAATAGTCCAACCAATAAGATTAAAA
1 TAATAGTCCAACCAAT---ATTAAAA
94661119 TAATAGTCCAACCAAT-TTAA
1 TAATAGTCCAACCAATATTAA
94661139 TCGGTCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.20
26 16 0.80
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.26
Consensus pattern (23 bp):
TAATAGTCCAACCAATATTAAAA
Found at i:94664068 original size:21 final size:21
Alignment explanation
Indices: 94664042--94664084 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
94664032 AGAACACACC
*
94664042 AACAGAAGCTCATAAGAGCTT
1 AACAGAAGCTCATAAAAGCTT
*
94664063 AACAGAAGCTCGTAAAAGCTT
1 AACAGAAGCTCATAAAAGCTT
94664084 A
1 A
94664085 TCCACCCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (21 bp):
AACAGAAGCTCATAAAAGCTT
Found at i:94665612 original size:18 final size:18
Alignment explanation
Indices: 94665591--94665634 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
94665581 ATTTGTATTT
94665591 TTTTATAAATATTTTG-AA
1 TTTTA-AAATATTTTGAAA
* *
94665609 TTTTAAATTTTTTTGAAA
1 TTTTAAAATATTTTGAAA
94665627 TTTTAAAA
1 TTTTAAAA
94665635 AAAATTGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTTAAAATATTTTGAAA
Found at i:94666429 original size:27 final size:28
Alignment explanation
Indices: 94666368--94666429 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
94666358 TTTAAATGCA
*
94666368 CAATTACACAAAATCTAAATTCACATAT
1 CAATTACACAAAATCAAAATTCACATAT
** *
94666396 CATATTACATTAAATCAAAATTCATATAT
1 CA-ATTACACAAAATCAAAATTCACATAT
94666425 -AATTA
1 CAATTA
94666430 TAATATTCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 4 0.14
28 3 0.10
29 22 0.76
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (28 bp):
CAATTACACAAAATCAAAATTCACATAT
Found at i:94667983 original size:55 final size:55
Alignment explanation
Indices: 94667919--94668028 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
94667909 TTATGAGATT
94667919 TTAACCAAAATCATAAGCAACTTAAATTTTTAATTTATCATTTCAATTACTCACA
1 TTAACCAAAATCATAAGCAACTTAAATTTTTAATTTATCATTTCAATTACTCACA
94667974 TTAACCAAAATCATAAGCAACTTAAATTTTTAATTTATCATTTCAATTACTCACA
1 TTAACCAAAATCATAAGCAACTTAAATTTTTAATTTATCATTTCAATTACTCACA
94668029 CTGTCTTCTC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (55 bp):
TTAACCAAAATCATAAGCAACTTAAATTTTTAATTTATCATTTCAATTACTCACA
Found at i:94668702 original size:18 final size:19
Alignment explanation
Indices: 94668679--94668714 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94668669 AAAAAAAAAC
94668679 TGTTGTT-CTTTCTTGTTT
1 TGTTGTTACTTTCTTGTTT
*
94668697 TGTTGTTATTTTCTTGTT
1 TGTTGTTACTTTCTTGTT
94668715 ATTTTCTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.03, C:0.08, G:0.17, T:0.72
Consensus pattern (19 bp):
TGTTGTTACTTTCTTGTTT
Found at i:94672374 original size:16 final size:17
Alignment explanation
Indices: 94672355--94672397 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
94672345 TATTAATTAA
*
94672355 TTATATTATAAA-ACAT
1 TTATATTATAAATAAAT
*
94672371 TTATATAATAAATAAAT
1 TTATATTATAAATAAAT
94672388 TTA-ATTATAA
1 TTATATTATAA
94672398 CAAGTGAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATATTATAAATAAAT
Found at i:94672451 original size:18 final size:18
Alignment explanation
Indices: 94672425--94672459 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94672415 TGATATACAA
94672425 ATATAAAATAAATATTTG
1 ATATAAAATAAATATTTG
* *
94672443 ATATTAAATAGATATTT
1 ATATAAAATAAATATTT
94672460 TTATAGTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (18 bp):
ATATAAAATAAATATTTG
Found at i:94673835 original size:18 final size:18
Alignment explanation
Indices: 94673812--94673929 Score: 87
Period size: 18 Copynumber: 6.6 Consensus size: 18
94673802 TAAATAGAGG
*
94673812 TACTGAATAACTAACTGC
1 TACTGAATAACTGACTGC
* * *
94673830 TACTGAATAATTAACTGG
1 TACTGAATAACTGACTGC
* **
94673848 TACTGAATAAATGACTAT
1 TACTGAATAACTGACTGC
* *
94673866 TATTGAATAACTGA-TTC
1 TACTGAATAACTGACTGC
* *
94673883 TTACTGAATAATTGACTGT
1 -TACTGAATAACTGACTGC
*
94673902 TACTGAATAAAC-GACTGT
1 TACTGAAT-AACTGACTGC
*
94673920 TATTGAATAA
1 TACTGAATAA
94673930 ATTATTACTA
Statistics
Matches: 81, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
17 3 0.04
18 75 0.93
19 3 0.04
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (18 bp):
TACTGAATAACTGACTGC
Found at i:94673873 original size:36 final size:36
Alignment explanation
Indices: 94673810--94673947 Score: 96
Period size: 36 Copynumber: 3.8 Consensus size: 36
94673800 GGTAAATAGA
* * * * *
94673810 GGTACTGAATAACTAACTGCTACTGAATAATTAACT
1 GGTACTGAATAAATGACTACTACTGAATAAATGACT
* * * *
94673846 GGTACTGAATAAATGACTATTATTGAATAACTGATT
1 GGTACTGAATAAATGACTACTACTGAATAAATGACT
** * ** *
94673882 CTTACTGAATAATTGACTGTTACTGAATAAACGACT
1 GGTACTGAATAAATGACTACTACTGAATAAATGACT
* * * * *
94673918 GTTATTGAATAAATTATTACTATTGAATAA
1 GGTACTGAATAAATGACTACTACTGAATAA
94673948 CTAATTAATA
Statistics
Matches: 78, Mismatches: 24, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
36 78 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (36 bp):
GGTACTGAATAAATGACTACTACTGAATAAATGACT
Found at i:94673954 original size:18 final size:18
Alignment explanation
Indices: 94673920--94673954 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94673910 AAACGACTGT
*
94673920 TATTGAATAAATTATTAC
1 TATTGAATAAATAATTAC
*
94673938 TATTGAATAACTAATTA
1 TATTGAATAAATAATTA
94673955 ATACTGATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (18 bp):
TATTGAATAAATAATTAC
Found at i:94673960 original size:54 final size:54
Alignment explanation
Indices: 94673830--94673961 Score: 131
Period size: 54 Copynumber: 2.4 Consensus size: 54
94673820 AACTAACTGC
* ** * *
94673830 TACTGAATAATTAACTGGTACTGAATAAATGACTATTATTGAATAACTGATTCT
1 TACTGAATAACTAACTAATACTGAATAAACGACTATTATTGAATAAATGATTCT
* * ** * *
94673884 TACTGAATAATTGACTGTTACTGAATAAACGACTGTTATTGAATAAATTATTAC-
1 TACTGAATAACTAACTAATACTGAATAAACGACTATTATTGAATAAATGATT-CT
* *
94673938 TATTGAATAACTAATTAATACTGA
1 TACTGAATAACTAACTAATACTGA
94673962 TGACTGACTG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 64 0.98
55 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (54 bp):
TACTGAATAACTAACTAATACTGAATAAACGACTATTATTGAATAAATGATTCT
Found at i:94676999 original size:46 final size:44
Alignment explanation
Indices: 94676894--94677100 Score: 221
Period size: 46 Copynumber: 4.7 Consensus size: 44
94676884 ATATGAAATG
*
94676894 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* *
94676932 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATA
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA-A-A
*
94676978 TGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* *
94677022 AGAATAAGACCATGGTTGAAAGATGCCATGGCAACATGACA-GAAAA
1 TG--TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAA
* * *
94677068 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 T--GTAAGACCATGGTTGAAAGATACCATGGCA
94677101 TCACGTCAAA
Statistics
Matches: 146, Mismatches: 10, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
38 36 0.25
41 2 0.01
44 2 0.01
45 2 0.01
46 103 0.71
48 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.21
Consensus pattern (44 bp):
TGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
Found at i:94677406 original size:23 final size:25
Alignment explanation
Indices: 94677361--94677407 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
94677351 AATAAATATA
*
94677361 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
94677386 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
94677408 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:94680314 original size:15 final size:15
Alignment explanation
Indices: 94680294--94680337 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
94680284 TATACTAAAA
94680294 TATATTTATTATTAG
1 TATATTTATTATTAG
*
94680309 TATATTTATAATT-G
1 TATATTTATTATTAG
*
94680323 TAATATATATTATTA
1 T-ATATTTATTATTA
94680338 AAATATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 2 0.08
15 22 0.92
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TATATTTATTATTAG
Found at i:94680343 original size:11 final size:11
Alignment explanation
Indices: 94680329--94680381 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
94680319 ATTGTAATAT
94680329 ATATTATTAAA
1 ATATTATTAAA
*
94680340 ATATTAATATAA
1 ATATTATTA-AA
* *
94680352 ATATTTTTCAA
1 ATATTATTAAA
*
94680363 ATATTATTTAA
1 ATATTATTAAA
94680374 A-ATTATTA
1 ATATTATTA
94680382 CTTTTAAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 6 0.18
11 20 0.59
12 8 0.24
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (11 bp):
ATATTATTAAA
Found at i:94680349 original size:21 final size:22
Alignment explanation
Indices: 94680323--94680381 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 22
94680313 TTTATAATTG
94680323 TAATAT-ATATTATTAAAATAT
1 TAATATAATATTATTAAAATAT
* *
94680344 TAATATAAATATTTTTCAAATAT
1 TAATAT-AATATTATTAAAATAT
* *
94680367 T-ATTTAAAATTATTA
1 TAATATAATATTATTA
94680382 CTTTTAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
21 13 0.43
22 3 0.10
23 14 0.47
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
TAATATAATATTATTAAAATAT
Found at i:94689833 original size:43 final size:42
Alignment explanation
Indices: 94689725--94689842 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 42
94689715 GACTTATGAT
* *
94689725 TTACGTGTAAGACTATGTCTGGGACA-TCAGCATCGTATTTGA
1 TTACGTGTAAGACAATGTCTGGGACAGT-GGCATCGTATTTGA
** * ** * *
94689767 TTTTGTGTAAGCCCCTATTTGGGACAGTGGCATCGATATTTGA
1 TTACGTGTAAGACAATGTCTGGGACAGTGGCATCG-TATTTGA
*
94689810 TTACATGTAAGACAATGTCTGGGAC-GTTGGCAT
1 TTACGTGTAAGACAATGTCTGGGACAG-TGGCAT
94689843 TGTGCTAGCT
Statistics
Matches: 57, Mismatches: 16, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
42 26 0.46
43 31 0.54
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
TTACGTGTAAGACAATGTCTGGGACAGTGGCATCGTATTTGA
Found at i:94691101 original size:39 final size:39
Alignment explanation
Indices: 94691042--94691125 Score: 150
Period size: 39 Copynumber: 2.1 Consensus size: 39
94691032 CCTGTTTTGC
94691042 CACAGCTTAAACACACGAGCTTGTCTAATATCGTGTGAGG
1 CACA-CTTAAACACACGAGCTTGTCTAATATCGTGTGAGG
*
94691082 CACACTTAAACACACGAGCTTGTCTAATGTCGTGTGAGG
1 CACACTTAAACACACGAGCTTGTCTAATATCGTGTGAGG
94691121 CACAC
1 CACAC
94691126 GGCCTGCTCC
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 39 0.91
40 4 0.09
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (39 bp):
CACACTTAAACACACGAGCTTGTCTAATATCGTGTGAGG
Found at i:94692082 original size:22 final size:22
Alignment explanation
Indices: 94692052--94692094 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
94692042 TGAGTTGACA
94692052 TCGTCGCGACTTCAGGAGTTCC
1 TCGTCGCGACTTCAGGAGTTCC
* *
94692074 TCGTTGCGACTTTAGGAGTTC
1 TCGTCGCGACTTCAGGAGTTC
94692095 TTTGTCGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.26, G:0.28, T:0.33
Consensus pattern (22 bp):
TCGTCGCGACTTCAGGAGTTCC
Found at i:94693589 original size:22 final size:22
Alignment explanation
Indices: 94693564--94693620 Score: 53
Period size: 23 Copynumber: 2.5 Consensus size: 22
94693554 TCACAATTTT
94693564 TAGGGATTTGTTGGCTA-AATTG
1 TAGGGATTTGTT-GCTACAATTG
* * * *
94693586 TAGGCAATTGTCTTCTACAATTT
1 TAGGGATTTGT-TGCTACAATTG
94693609 TAGGGATTTGTT
1 TAGGGATTTGTT
94693621 TCTCTTTTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
22 13 0.48
23 14 0.52
ACGTcount: A:0.23, C:0.09, G:0.25, T:0.44
Consensus pattern (22 bp):
TAGGGATTTGTTGCTACAATTG
Found at i:94694367 original size:19 final size:19
Alignment explanation
Indices: 94694329--94694419 Score: 76
Period size: 19 Copynumber: 4.8 Consensus size: 19
94694319 AGGGAAACTT
* * *
94694329 GCACACATAGTACATATTG
1 GCACACAAAGTGCATCTTG
*
94694348 GCGCACAAAGTGCATCTTG
1 GCACACAAAGTGCATCTTG
*
94694367 GCACACGAAGTGCATCTTG
1 GCACACAAAGTGCATCTTG
* * * **
94694386 ACGCATAAAGCACAT-TCTG
1 GCACACAAAGTGCATCT-TG
94694405 GCACACAAAGTGCAT
1 GCACACAAAGTGCAT
94694420 AAAGCCGTAC
Statistics
Matches: 54, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
18 1 0.02
19 53 0.98
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (19 bp):
GCACACAAAGTGCATCTTG
Found at i:94701996 original size:22 final size:21
Alignment explanation
Indices: 94701965--94702021 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
94701955 CTTCTCTATT
94701965 TTTTCTTTC-TCCCTTCTTTCC
1 TTTTCTTTCTTCCC-TCTTTCC
*
94701986 TTTTCTATTCTTTCCTCTTTCC
1 TTTTCT-TTCTTCCCTCTTTCC
*
94702008 CTTTC-TTCTTCCCT
1 TTTTCTTTCTTCCCT
94702022 TACCTCTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 8 0.26
21 6 0.19
22 14 0.45
23 3 0.10
ACGTcount: A:0.02, C:0.37, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTCTTTCTTCCCTCTTTCC
Found at i:94708388 original size:26 final size:26
Alignment explanation
Indices: 94708301--94708395 Score: 66
Period size: 26 Copynumber: 3.5 Consensus size: 26
94708291 CAAAAATAAT
*
94708301 TTTATTTTAATAAATTTAATATTAAA
1 TTTAATTTAATAAATTTAATATTAAA
* * **
94708327 ATTAATTTAATACTTATATTGATAGTATTTTA
1 TTTAATTTAATA---A-ATT--TAATATTAAA
*
94708359 -TTAATTTAATAGATTTAATATTAAA
1 TTTAATTTAATAAATTTAATATTAAA
*
94708384 TTTAATCTAATA
1 TTTAATTTAATA
94708396 TTTGTCTTGA
Statistics
Matches: 52, Mismatches: 10, Indels: 14
0.68 0.13 0.18
Matches are distributed among these distances:
25 7 0.13
26 20 0.38
27 3 0.06
29 1 0.02
30 3 0.06
31 11 0.21
32 7 0.13
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (26 bp):
TTTAATTTAATAAATTTAATATTAAA
Found at i:94708389 original size:57 final size:58
Alignment explanation
Indices: 94708292--94708427 Score: 157
Period size: 57 Copynumber: 2.4 Consensus size: 58
94708282 TAACTATTCC
* * * *
94708292 AAAAATAATTTTATTTTAATAAATTTAATATTAAAATTAATTTAATACTTATATTGAT
1 AAAAATTATATTAATTTAATAAATTTAATATTAAAATTAATCTAATACTTATATTGAT
** * * * * * *
94708350 -AGTATTTTATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTGTCTTGAT
1 AAAAATTATATTAATTTAATAAATTTAATATTAAAATTAATCTAATACTTATATTGAT
94708407 AAAAATTATATTAATTTAATA
1 AAAAATTATATTAATTTAATA
94708428 TTAAAGTGAT
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
57 45 0.73
58 17 0.27
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (58 bp):
AAAAATTATATTAATTTAATAAATTTAATATTAAAATTAATCTAATACTTATATTGAT
Found at i:94710259 original size:42 final size:42
Alignment explanation
Indices: 94710101--94710249 Score: 156
Period size: 42 Copynumber: 3.5 Consensus size: 42
94710091 CAAAGCAATT
* * *
94710101 ATACTGGCACACAAAATGCATCATCGAATGAACCG-AATGATC
1 ATACTGGCACA-TAAATGCATCATCGAATAAACCGAAATAATC
* * * ** * *
94710143 ATACTGGTACATAAGTGTATCATCGAATAAATTGAAGTAACC
1 ATACTGGCACATAAATGCATCATCGAATAAACCGAAATAATC
* * * *
94710185 ATACTAGTACATAAGTTCATCATCGAATAAACCGAAATAATC
1 ATACTGGCACATAAATGCATCATCGAATAAACCGAAATAATC
94710227 ATACTGGCACATAAATGCATCAT
1 ATACTGGCACATAAATGCATCAT
94710250 TAGATAAACC
Statistics
Matches: 85, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 17 0.20
42 68 0.80
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (42 bp):
ATACTGGCACATAAATGCATCATCGAATAAACCGAAATAATC
Found at i:94711040 original size:11 final size:11
Alignment explanation
Indices: 94711024--94711048 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94711014 CGTAATTCTT
94711024 CCACTACTCAA
1 CCACTACTCAA
94711035 CCACTACTCAA
1 CCACTACTCAA
94711046 CCA
1 CCA
94711049 TTAGCTGGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (11 bp):
CCACTACTCAA
Found at i:94716398 original size:18 final size:18
Alignment explanation
Indices: 94716375--94716430 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
94716365 ATTTTTTTAA
94716375 ATTAATAATAATATTCAT
1 ATTAATAATAATATTCAT
** *
94716393 ATTAAT-CGAAT-TT-AA
1 ATTAATAATAATATTCAT
94716408 ATTAATAATAATATTCAT
1 ATTAATAATAATATTCAT
94716426 ATTAA
1 ATTAA
94716431 CCATTCATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 7 0.24
16 5 0.17
17 5 0.17
18 12 0.41
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAATAATAATATTCAT
Found at i:94723048 original size:12 final size:12
Alignment explanation
Indices: 94723031--94723056 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94723021 CAAAACAGGC
94723031 TTTTAGCGGCGT
1 TTTTAGCGGCGT
94723043 TTTTAGCGGCGT
1 TTTTAGCGGCGT
94723055 TT
1 TT
94723057 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:94723432 original size:114 final size:113
Alignment explanation
Indices: 94723125--94723490 Score: 556
Period size: 112 Copynumber: 3.2 Consensus size: 113
94723115 AAAATAAGCA
* * *
94723125 TTAGCGGCATTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTCTCGAGCTTT
1 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTTT
* *
94723190 CGGGGATTTAGAGGCGTTTATAAGAAAGCGCCGCTAATGCTCAGGGCT
66 CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
94723238 TTAGCGACATTTTTGGG-AAGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCTTT
1 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTTT
* *
94723302 CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCGGGGTT
66 CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
94723350 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTTTAAGCTT
1 TTAGCGGCATTTTTGGGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTT
* *
94723415 TCGGGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGC-CTAGGACT
65 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTC-AGGGCT
* * *
94723464 TTAGCGGCGTTTTTCGTAAAGCGCCGC
1 TTAGCGGCATTTTTGGGAAAGCGCCGC
94723491 TAATGCCCAG
Statistics
Matches: 230, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
112 104 0.45
113 25 0.11
114 101 0.44
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (113 bp):
TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTTT
CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:94723486 original size:41 final size:40
Alignment explanation
Indices: 94723422--94723531 Score: 139
Period size: 41 Copynumber: 2.7 Consensus size: 40
94723412 CTTTCGGGGA
* *
94723422 TTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCCTAGGAC
1 TTTAGCGGCGTTTTT-AGAAAGCGCCGCTAATGCCCAGGAC
* *
94723463 TTTAGCGGCGTTTTTCGTAAAGCGCCGCTAATGCCCAGGGC
1 TTTAGCGGCGTTTTTAG-AAAGCGCCGCTAATGCCCAGGAC
* *
94723504 TTTAGCGGCATTTTTGGAAAAGCGCCGC
1 TTTAGCGGCGTTTTTAG-AAAGCGCCGC
94723532 AAAAAAACCT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 1 0.02
41 60 0.98
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTAGAAAGCGCCGCTAATGCCCAGGAC
Found at i:94723590 original size:155 final size:155
Alignment explanation
Indices: 94723308--94723607 Score: 471
Period size: 155 Copynumber: 1.9 Consensus size: 155
94723298 CTTTCGGGGA
* * * *
94723308 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCGGGGTTTTAGCGGCATTTTTGGGAAAGCG
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGCG
*
94723373 CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTTTAAGCTTTCGGGGATTTAGCGGCG-TTTTT
66 CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTT
94723437 -AAGGAAGCGCCGCTAATGCCTAGGAC
131 GAA--AAGCGCCGCTAATGCCTAGGAC
*
94723463 TTTAGCGGCGTTTTT-CGTAAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGC
1 TTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGC
* * *
94723527 GCCGCAAAAAAACCTAAGCTCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTTGCGGCGTTTTT
65 GCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTT
94723592 TGAAAAGCGCCGCTAA
130 TGAAAAGCGCCGCTAA
94723608 AATTTTTTTA
Statistics
Matches: 133, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
154 1 0.01
155 125 0.94
156 5 0.04
157 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (155 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGCG
CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTT
GAAAAGCGCCGCTAATGCCTAGGAC
Found at i:94723892 original size:14 final size:14
Alignment explanation
Indices: 94723851--94723892 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
94723841 AGTTCATATT
94723851 TTATGGTTTAGGGA
1 TTATGGTTTAGGGA
*
94723865 GTATGGGTTTAGGGA
1 TTAT-GGTTTAGGGA
*
94723880 TTATGGATTAGGG
1 TTATGGTTTAGGG
94723893 GTTGGGATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (14 bp):
TTATGGTTTAGGGA
Found at i:94724781 original size:20 final size:20
Alignment explanation
Indices: 94724743--94724783 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
94724733 AAAACGCCGC
**
94724743 AAAAAATAAATCAACTTATA
1 AAAAAATAAAAAAACTTATA
*
94724763 AAAAAATAAAAAAATTTATA
1 AAAAAATAAAAAAACTTATA
94724783 A
1 A
94724784 TAGCAAAACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAAATAAAAAAACTTATA
Found at i:94724922 original size:19 final size:20
Alignment explanation
Indices: 94724888--94724928 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
94724878 AAAACGCCGC
**
94724888 AAAAAATAAATCAA-TTTAT
1 AAAAAATAAAAAAATTTTAT
94724907 AAAAAATAAAAAAATTTTAT
1 AAAAAATAAAAAAATTTTAT
94724927 AA
1 AA
94724929 TAGCAAAACG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAAAATAAAAAAATTTTAT
Found at i:94725004 original size:144 final size:145
Alignment explanation
Indices: 94724732--94725182 Score: 782
Period size: 145 Copynumber: 3.1 Consensus size: 145
94724722 AAATAGCTTA
*
94724732 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAAAAA-TTTATAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAATTTTATAATAGCAAAACGGC
* * *
94724796 GCCGTTTTGTTCAAAATGAAAAAAAATTGCGGCGCATTATAAGAAGCGCCGCTAAAGGTAAGCAA
66 GTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
94724861 TAGCGGCGTTTTCTAT
131 TAGCGGCGTTTT-TAT
94724877 AAAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAATAAAAAAATTTTATAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAATTTTATAATAGCAAAACGGC
94724941 GTCGTTTTGTTCAAAATG-AAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
66 GTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
94725005 TAGCGGCGTTTTTTAT
131 TAGCGGCG-TTTTTAT
* *
94725021 AGAAAACGCTGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAATTTTAGAATAGCAAAACG
1 A-AAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAAATAAAAAAATTTTATAATAGCAAAACG
94725086 GCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGC
64 GCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGC
94725151 AATAGCGGCGTTTTTAT
129 AATAGCGGCGTTTTTAT
94725168 AAAAAACGCCGCAAA
1 -AAAAACGCCGCAAA
94725183 GCAAAACGGC
Statistics
Matches: 292, Mismatches: 7, Indels: 12
0.94 0.02 0.04
Matches are distributed among these distances:
144 70 0.24
145 97 0.33
147 70 0.24
148 55 0.19
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.24
Consensus pattern (145 bp):
AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAATTTTATAATAGCAAAACGGC
GTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
TAGCGGCGTTTTTAT
Found at i:94725193 original size:105 final size:106
Alignment explanation
Indices: 94725077--94725289 Score: 383
Period size: 105 Copynumber: 2.0 Consensus size: 106
94725067 ATTTTAGAAT
94725077 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTA
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTA
94725142 AAGGTAAGCAATAGCGGCG-TTTTTATAAAAAACGCCGCAA
66 AAGGTAAGCAATAGCGGCGTTTTTTATAAAAAACGCCGCAA
**
94725182 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCTA
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTA
*
94725247 AAGGTAAGCAATAGCGGCGTTTTTTTATAGAAAACGCCGCAA
66 AAGGTAAGCAATAGCGGCG-TTTTTTATAAAAAACGCCGCAA
94725289 A
1 A
94725290 AAATAAATCA
Statistics
Matches: 103, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
105 82 0.80
107 21 0.20
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (106 bp):
AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTA
AAGGTAAGCAATAGCGGCGTTTTTTATAAAAAACGCCGCAA
Found at i:94725415 original size:117 final size:120
Alignment explanation
Indices: 94725247--94725485 Score: 378
Period size: 124 Copynumber: 2.0 Consensus size: 120
94725237 AGCGCCGCTA
*
94725247 AAGGTAAGCAATAGCGGCGTTTTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTAT-A-AAA
1 AAGGTAAGCAATAGCGGCGTTTTTCTATAGAAAACGCCGCAAAAAATAAATCAATTTATAATAAA
94725310 AAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGG
66 AAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAAT-AAAAAATTTTGCGG
*
94725366 AAGGTAATCAATAGCGGCG-TTTTCTATA-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
1 AAGGTAAGCAATAGCGGCGTTTTTCTATAGAAAACGCCGCAAAAAATAAATCAATTTAT-----A
94725429 ATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAATTTTG
61 ATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAATTTTG
94725486 TGGCGCTTCT
Statistics
Matches: 111, Mismatches: 2, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
117 29 0.26
118 8 0.07
119 18 0.16
123 12 0.11
124 44 0.40
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (120 bp):
AAGGTAAGCAATAGCGGCGTTTTTCTATAGAAAACGCCGCAAAAAATAAATCAATTTATAATAAA
AAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAATTTTGCGG
Found at i:94727663 original size:43 final size:43
Alignment explanation
Indices: 94727630--94727854 Score: 292
Period size: 43 Copynumber: 5.2 Consensus size: 43
94727620 GAATCATACT
*
94727630 TTTAGTGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
* * *
94727673 TTTAGTGGCGTTTGTGATGAAAGCGCCACTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
* *
94727716 TTTAGTGGCGTTTGTGATAAAAGCGCTGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
* *
94727759 TTTAGCGGCGTTTATGAGT-AAAGCGCCGCTAAAGAACATGTTC
1 TTTAGCGGCGTTTGTGA-TAAAAGCGCCGCTAAAGATCATGTTC
* ** * **
94727802 TTTAGCGGCGTTT-TGTTTTTAAGCGCCGCTAAAGAACATGACC
1 TTTAGCGGCGTTTGTG-ATAAAAGCGCCGCTAAAGATCATGTTC
94727845 TTTAGCGGCG
1 TTTAGCGGCG
94727855 CTTATTTCTG
Statistics
Matches: 166, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
42 3 0.02
43 162 0.98
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
Found at i:94730953 original size:15 final size:15
Alignment explanation
Indices: 94730935--94730991 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
94730925 TATCTGTTTT
94730935 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
94730950 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
94730965 ATTGAATTTATATTG
1 ATTGAATTTATATTG
94730980 ATTGAA-TTATAT
1 ATTGAATTTATAT
94730992 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:94730970 original size:30 final size:28
Alignment explanation
Indices: 94730931--94730989 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
94730921 TGAATATCTG
94730931 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
94730960 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
94730989 T
1 T
94730990 ATAATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:94731422 original size:21 final size:22
Alignment explanation
Indices: 94731364--94731428 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
94731354 CTTTACCGAT
* *
94731364 TAGGCACTTTATGTGTCATATT
1 TAGGCACTTTATGTGTCGTATC
* **
94731386 TCAGGCACCTCGTGTGTCGT-TC
1 T-AGGCACTTTATGTGTCGTATC
94731408 TAGGCACTTTATGTGTCGTAT
1 TAGGCACTTTATGTGTCGTAT
94731429 ACTGATCAGG
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 15 0.45
22 4 0.12
23 14 0.42
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (22 bp):
TAGGCACTTTATGTGTCGTATC
Found at i:94731611 original size:18 final size:19
Alignment explanation
Indices: 94731590--94731630 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
94731580 AATGAAATGA
94731590 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
94731608 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
94731627 GAAA
1 GAAA
94731631 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:94739622 original size:26 final size:25
Alignment explanation
Indices: 94739580--94739694 Score: 124
Period size: 26 Copynumber: 4.4 Consensus size: 25
94739570 ATTAAAAAGG
*
94739580 TGAAAAAGCGGGGAAATTAAAAATAT
1 TGAAAAAG-GGGAAAATTAAAAATAT
* *
94739606 TGCAACAGGGGAAAAATTAAAAATAAT
1 TGAAAAAGGGG-AAAATTAAAAAT-AT
*
94739633 GGAAAAA-GGGAAAATTAAAAATAAT
1 TGAAAAAGGGGAAAATTAAAAAT-AT
* *
94739658 GGAAAAAGGGGAAAATTAAAAATAA
1 TGAAAAAGGGGAAAATTAAAAATAT
94739683 TGAAAAAAGGGG
1 TG-AAAAAGGGG
94739695 GGAAATTTTA
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
25 27 0.35
26 44 0.57
27 6 0.08
ACGTcount: A:0.58, C:0.03, G:0.23, T:0.16
Consensus pattern (25 bp):
TGAAAAAGGGGAAAATTAAAAATAT
Found at i:94739646 original size:25 final size:25
Alignment explanation
Indices: 94739593--94739693 Score: 139
Period size: 26 Copynumber: 4.0 Consensus size: 25
94739583 AAAAGCGGGG
* * * *
94739593 AAATTAAAAATATTGCAACAGGGGAA
1 AAATTAAAAATAATGGAAAAAGGG-A
94739619 AAATTAAAAATAATGGAAAAAGGGA
1 AAATTAAAAATAATGGAAAAAGGGA
94739644 AAATTAAAAATAATGGAAAAAGGGGA
1 AAATTAAAAATAATGGAAAAA-GGGA
*
94739670 AAATTAAAAATAATGAAAAAAGGG
1 AAATTAAAAATAATGGAAAAAGGG
94739694 GGGAAATTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
25 25 0.36
26 44 0.64
ACGTcount: A:0.61, C:0.02, G:0.20, T:0.17
Consensus pattern (25 bp):
AAATTAAAAATAATGGAAAAAGGGA
Found at i:94739710 original size:51 final size:52
Alignment explanation
Indices: 94739593--94739693 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 52
94739583 AAAAGCGGGG
* * * *
94739593 AAATTAAAAAT-ATTGCAACAGGGGAAAAATTAAAAATAATGGAAAAAGGGA
1 AAATTAAAAATAATGGAAAAAGGGGAAAAATTAAAAATAATGAAAAAAGGGA
94739644 AAATTAAAAATAATGGAAAAAGGGG-AAAATTAAAAATAATGAAAAAAGGG
1 AAATTAAAAATAATGGAAAAAGGGGAAAAATTAAAAATAATGAAAAAAGGG
94739694 GGGAAATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 35 0.78
52 10 0.22
ACGTcount: A:0.61, C:0.02, G:0.20, T:0.17
Consensus pattern (52 bp):
AAATTAAAAATAATGGAAAAAGGGGAAAAATTAAAAATAATGAAAAAAGGGA
Found at i:94739827 original size:18 final size:18
Alignment explanation
Indices: 94739806--94739853 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
94739796 AAAAGAGGGG
*
94739806 AAAAATAAAAACAGTTAA
1 AAAAATAAAAACAGGTAA
* *
94739824 AAAAATTAAAAGAGGTAA
1 AAAAATAAAAACAGGTAA
94739842 AAAAAGTAAAAA
1 AAAAA-TAAAAA
94739854 AAAAAGTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 20 0.80
19 5 0.20
ACGTcount: A:0.73, C:0.02, G:0.10, T:0.15
Consensus pattern (18 bp):
AAAAATAAAAACAGGTAA
Found at i:94739865 original size:20 final size:20
Alignment explanation
Indices: 94739842--94739884 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
94739832 AAAGAGGTAA
94739842 AAAAAGTAA-AAAAAAAAGTG
1 AAAAAG-AAGAAAAAAAAGTG
*
94739862 AAAAAGAAGAAAAAAAATTG
1 AAAAAGAAGAAAAAAAAGTG
94739882 AAA
1 AAA
94739885 TTGATGATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (20 bp):
AAAAAGAAGAAAAAAAAGTG
Found at i:94739931 original size:29 final size:29
Alignment explanation
Indices: 94739898--94739960 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
94739888 ATGATTGGTG
*
94739898 AAAATAAGGAAGGTGAAAAAA-AAAGAACA
1 AAAATAAGGAAGGTCAAAAAAGAAA-AACA
* *
94739927 AAAATAAGGGAGGTCAAAAAAGAAAAAGA
1 AAAATAAGGAAGGTCAAAAAAGAAAAACA
94739956 AAAAT
1 AAAAT
94739961 CGGAATATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.68, C:0.03, G:0.21, T:0.08
Consensus pattern (29 bp):
AAAATAAGGAAGGTCAAAAAAGAAAAACA
Found at i:94756069 original size:17 final size:18
Alignment explanation
Indices: 94756047--94756080 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
94756037 CAAGTGCTTT
94756047 TTTGACAAA-TTGGAACA
1 TTTGACAAATTTGGAACA
94756064 TTTGACAAATTTGGAAC
1 TTTGACAAATTTGGAAC
94756081 TGTAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (18 bp):
TTTGACAAATTTGGAACA
Found at i:94759745 original size:16 final size:16
Alignment explanation
Indices: 94759724--94759755 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
94759714 TTATAGATAG
94759724 ATAGCCAAATGATTGT
1 ATAGCCAAATGATTGT
94759740 ATAGCCAAATGATTGT
1 ATAGCCAAATGATTGT
94759756 TTCATGAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (16 bp):
ATAGCCAAATGATTGT
Found at i:94763204 original size:20 final size:20
Alignment explanation
Indices: 94763165--94763204 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
94763155 GTTTAAGTTC
* *
94763165 TGAAAGACTATGGTATGTTG
1 TGAAAGACTATGATAGGTTG
*
94763185 TGAAAGATTATGATAGGTTG
1 TGAAAGACTATGATAGGTTG
94763205 CAAGTTGGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.35
Consensus pattern (20 bp):
TGAAAGACTATGATAGGTTG
Found at i:94767756 original size:12 final size:12
Alignment explanation
Indices: 94767739--94767771 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
94767729 CGGCCGGCCC
94767739 ATATTAATTTTT
1 ATATTAATTTTT
94767751 ATATT-ATTTTT
1 ATATTAATTTTT
94767762 ATA-TAATTTT
1 ATATTAATTTT
94767772 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:94774566 original size:21 final size:21
Alignment explanation
Indices: 94774526--94774566 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94774516 AGACAAATAT
* *
94774526 TAAAATTTTAAACTCTAAATC
1 TAAAATTTTAAAATCAAAATC
94774547 TAAAATTTTAAAATCAAAAT
1 TAAAATTTTAAAATCAAAAT
94774567 TTATTAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (21 bp):
TAAAATTTTAAAATCAAAATC
Found at i:94774979 original size:25 final size:27
Alignment explanation
Indices: 94774932--94774983 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
94774922 AATAAATGGT
*
94774932 TTTTGAGGTTATTATTCTGAAATATGTA
1 TTTTGAGATTATTATTC-GAAATATGTA
94774960 TTTTGAGATTATT-TTC-AAATATGT
1 TTTTGAGATTATTATTCGAAATATGT
94774984 GTTCTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
27 3 0.13
28 12 0.52
ACGTcount: A:0.29, C:0.04, G:0.15, T:0.52
Consensus pattern (27 bp):
TTTTGAGATTATTATTCGAAATATGTA
Found at i:94783440 original size:13 final size:14
Alignment explanation
Indices: 94783419--94783447 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
94783409 TGAAAAATGG
94783419 ATTAGAAAATATTT
1 ATTAGAAAATATTT
94783433 ATTA-AAAATATTT
1 ATTAGAAAATATTT
94783446 AT
1 AT
94783448 GAAGTTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:94784108 original size:23 final size:23
Alignment explanation
Indices: 94784082--94784127 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
94784072 TATAAGAAAC
94784082 AAAAGAAAGAAACAAAAAGAATA
1 AAAAGAAAGAAACAAAAAGAATA
* * *
94784105 AAAAGAAGGAAAGAAACAGAATA
1 AAAAGAAAGAAACAAAAAGAATA
94784128 GCAGGGGACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.74, C:0.04, G:0.17, T:0.04
Consensus pattern (23 bp):
AAAAGAAAGAAACAAAAAGAATA
Found at i:94785066 original size:15 final size:15
Alignment explanation
Indices: 94785040--94785087 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
94785030 TATCAAATTT
*
94785040 ATATTGAATGAAATC
1 ATATTGATTGAAATC
* * *
94785055 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
94785070 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
94785084 ATAT
1 ATAT
94785088 AATAATATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:94785513 original size:21 final size:21
Alignment explanation
Indices: 94785487--94785534 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
94785477 ATCGTATTTT
94785487 AGGCACCTCGTGTGTCGTGTC
1 AGGCACCTCGTGTGTCGTGTC
* *
94785508 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCGTGTGTCGTGTC
94785529 AGGCAC
1 AGGCAC
94785535 TTTATGTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.12, C:0.27, G:0.31, T:0.29
Consensus pattern (21 bp):
AGGCACCTCGTGTGTCGTGTC
Found at i:94785542 original size:21 final size:21
Alignment explanation
Indices: 94785483--94785543 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
94785473 ATGCATCGTA
*
94785483 TTTTAGGCACCTCGTGTGTCG
1 TTTTAGGCACCTCATGTGTCG
* * *
94785504 TGTCAGGCACCTCGTGTGTCG
1 TTTTAGGCACCTCATGTGTCG
* *
94785525 TTTTAGGCACTTTATGTGT
1 TTTTAGGCACCTCATGTGT
94785544 TGTATACTGA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.11, C:0.21, G:0.28, T:0.39
Consensus pattern (21 bp):
TTTTAGGCACCTCATGTGTCG
Found at i:94788694 original size:6 final size:7
Alignment explanation
Indices: 94788677--94788701 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
94788667 ATTTAGTCCC
94788677 TTTTTTA
1 TTTTTTA
94788684 TTTTTTA
1 TTTTTTA
94788691 TTTTTTA
1 TTTTTTA
94788698 TTTT
1 TTTT
94788702 AAATACTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:94792836 original size:6 final size:6
Alignment explanation
Indices: 94792825--94792857 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
94792815 AAAACAAAAC
*
94792825 AAAGAA AAAGAA AAAGAA AAAGAA AACGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA
94792858 TAATAGAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:94792998 original size:18 final size:18
Alignment explanation
Indices: 94792964--94793012 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
94792954 GGGTTTGCAC
94792964 AATTCGGTTAAAACCGAAAA
1 AATTCGGTT--AACCGAAAA
***
94792984 AATTCGGTTAACCGACCC
1 AATTCGGTTAACCGAAAA
94793002 AATTCGGTTAA
1 AATTCGGTTAA
94793013 TCGGTTGGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 17 0.65
20 9 0.35
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (18 bp):
AATTCGGTTAACCGAAAA
Found at i:94793272 original size:28 final size:27
Alignment explanation
Indices: 94793223--94793276 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
94793213 AATATATTTA
*
94793223 AACCCAACCCAATTACCTAATTTAATT
1 AACCCAACCCAATTACATAATTTAATT
94793250 AACCCAACCCAA-TACAAATAATTTAAT
1 AACCCAACCCAATTAC--ATAATTTAAT
94793277 AAATAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 3 0.12
27 12 0.50
28 9 0.38
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (27 bp):
AACCCAACCCAATTACATAATTTAATT
Found at i:94793303 original size:14 final size:14
Alignment explanation
Indices: 94793280--94793309 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
94793270 ATTTAATAAA
94793280 TAAAAATAAAAATC
1 TAAAAATAAAAATC
*
94793294 TAAAAGTAAAAATC
1 TAAAAATAAAAATC
94793308 TA
1 TA
94793310 CTAAAACTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (14 bp):
TAAAAATAAAAATC
Found at i:94794616 original size:12 final size:11
Alignment explanation
Indices: 94794587--94794620 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
94794577 TTGTACCAAT
94794587 ATTTTATTTAA
1 ATTTTATTTAA
*
94794598 TTTTTATTATAA
1 ATTTTATT-TAA
94794610 ATTTTATTTAA
1 ATTTTATTTAA
94794621 CAAGTATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTTATTTAA
Found at i:94794706 original size:19 final size:21
Alignment explanation
Indices: 94794667--94794716 Score: 79
Period size: 19 Copynumber: 2.5 Consensus size: 21
94794657 ATGAAAATTG
94794667 TTTAATATTATAAATATGTAT
1 TTTAATATTATAAATATGTAT
94794688 TTTAATATTAT-AA-ATGTAT
1 TTTAATATTATAAATATGTAT
94794707 TTTAAT-TTAT
1 TTTAATATTAT
94794717 TATATAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.14
19 12 0.41
20 2 0.07
21 11 0.38
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTAATATTATAAATATGTAT
Found at i:94797224 original size:20 final size:18
Alignment explanation
Indices: 94797197--94797287 Score: 69
Period size: 17 Copynumber: 4.9 Consensus size: 18
94797187 TAATGTTTTA
94797197 AATTATGTAGTGATTCAT
1 AATTATGTAGTGATTCAT
* **
94797215 AGACTTATGTAAT-ATTTTT
1 A-A-TTATGTAGTGATTCAT
*
94797234 AATTATGTAGTGATTCAA
1 AATTATGTAGTGATTCAT
* **
94797252 AGACTTATGTAATG-TTTTT
1 A-A-TTATGTAGTGATTCAT
94797271 AATTATGTAGTGATTCA
1 AATTATGTAGTGATTCA
94797288 ATTCGGGTAT
Statistics
Matches: 53, Mismatches: 14, Indels: 12
0.67 0.18 0.15
Matches are distributed among these distances:
17 17 0.32
18 9 0.17
19 10 0.19
20 17 0.32
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.46
Consensus pattern (18 bp):
AATTATGTAGTGATTCAT
Found at i:94797224 original size:72 final size:73
Alignment explanation
Indices: 94797139--94797288 Score: 250
Period size: 72 Copynumber: 2.1 Consensus size: 73
94797129 ATGTGTTAAT
* *
94797139 TTCAAGACTTATGTAATGTTTTTAATTATGTAGTGATTCCAAGAC-T-TGTAATGTTTTAAATTA
1 TTCAAGACTTATGTAATATTTTTAATTATGTAGTGATTCAAAGACTTATGTAATGTTTTAAATTA
94797202 TGTAGTGA
66 TGTAGTGA
*
94797210 TTCATAGACTTATGTAATATTTTTAATTATGTAGTGATTCAAAGACTTATGTAATGTTTTTAATT
1 TTCA-AGACTTATGTAATATTTTTAATTATGTAGTGATTCAAAGACTTATGTAATGTTTTAAATT
94797275 ATGTAGTGA
65 ATGTAGTGA
94797284 TTCAA
1 TTCAA
94797289 TTCGGGTATT
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
71 4 0.05
72 39 0.53
73 2 0.03
74 28 0.38
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.46
Consensus pattern (73 bp):
TTCAAGACTTATGTAATATTTTTAATTATGTAGTGATTCAAAGACTTATGTAATGTTTTAAATTA
TGTAGTGA
Found at i:94797287 original size:37 final size:37
Alignment explanation
Indices: 94797142--94797288 Score: 244
Period size: 37 Copynumber: 4.0 Consensus size: 37
94797132 TGTTAATTTC
*
94797142 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCC
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
94797179 AAGAC-T-TGTAATGTTTTAAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
* *
94797214 TAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
94797251 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
94797288 A
1 A
94797289 TTCGGGTATT
Statistics
Matches: 101, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
35 31 0.31
36 2 0.02
37 68 0.67
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.46
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:94797310 original size:9 final size:9
Alignment explanation
Indices: 94797287--94797343 Score: 80
Period size: 9 Copynumber: 6.4 Consensus size: 9
94797277 GTAGTGATTC
*
94797287 AATTCGGGT
1 AATTCGGTT
94797296 -ATTCGGTT
1 AATTCGGTT
94797304 AATTCGGTT
1 AATTCGGTT
94797313 AATTCGGTT
1 AATTCGGTT
* *
94797322 AACTCGTTT
1 AATTCGGTT
94797331 AATTCGGTT
1 AATTCGGTT
94797340 AATT
1 AATT
94797344 TTTAACCACA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
8 7 0.17
9 35 0.83
ACGTcount: A:0.23, C:0.12, G:0.21, T:0.44
Consensus pattern (9 bp):
AATTCGGTT
Done.