Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 288 of 316
Found at i:95532205 original size:18 final size:17
Alignment explanation
Indices: 95532178--95532235 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
95532168 TATTATTTAT
95532178 ATTA-TATTATTGTTAGC
1 ATTATTATTATT-TTAGC
95532195 ATTATTATTATTCCTTAG-
1 ATTATTATTATT--TTAGC
* *
95532213 TTTATTATTATTTTATC
1 ATTATTATTATTTTAGC
95532230 ATTATT
1 ATTATT
95532236 TTCCATTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 3 0.09
17 9 0.26
18 18 0.53
19 4 0.12
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (17 bp):
ATTATTATTATTTTAGC
Found at i:95532510 original size:27 final size:27
Alignment explanation
Indices: 95532479--95532568 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 27
95532469 ATTGTTATCA
95532479 ATTTTAAATATTTTATACGTATA-ATTT
1 ATTTTAAATATTTTATACGTA-ACATTT
* *
95532506 CTTTTAAACTA--TCATACGTAACATTT
1 ATTTTAAA-TATTTTATACGTAACATTT
* * *
95532532 ATTTTGAAAT-TTTTATACGCATCTTTAT
1 ATTTT-AAATATTTTATACGTAACATT-T
95532560 ATTTTAAAT
1 ATTTTAAAT
95532569 TAATATATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
25 1 0.02
26 17 0.34
27 24 0.48
28 8 0.16
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.51
Consensus pattern (27 bp):
ATTTTAAATATTTTATACGTAACATTT
Found at i:95532680 original size:3 final size:3
Alignment explanation
Indices: 95532672--95532704 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
95532662 TTTAAAATAT
*
95532672 TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
95532705 CTATGTAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:95532808 original size:23 final size:23
Alignment explanation
Indices: 95532776--95532827 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
95532766 TAGGTTTTCA
* * *
95532776 CTTATAATATTATTATTGTCATT
1 CTTATTATATGATTATTATCATT
*
95532799 CTTATTATATGGTTATTATCATT
1 CTTATTATATGATTATTATCATT
*
95532822 ATTATT
1 CTTATT
95532828 CTCACCATCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.58
Consensus pattern (23 bp):
CTTATTATATGATTATTATCATT
Found at i:95539588 original size:3 final size:3
Alignment explanation
Indices: 95539580--95539608 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
95539570 CTTCTTAATC
95539580 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
95539609 CATTTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:95543045 original size:17 final size:17
Alignment explanation
Indices: 95543019--95543057 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
95543009 TTTGAAAAGG
95543019 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
*
95543036 AAAACGAATGAATCTTA
1 AAAACAAATGAATCTTA
95543053 AAAAC
1 AAAAC
95543058 TTAATAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:95549280 original size:12 final size:12
Alignment explanation
Indices: 95549263--95549289 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
95549253 GAAAATAGGG
95549263 TTTTAGCGGCGT
1 TTTTAGCGGCGT
95549275 TTTTAGCGGCGT
1 TTTTAGCGGCGT
95549287 TTT
1 TTT
95549290 ATCAAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.30, T:0.48
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:95549645 original size:41 final size:41
Alignment explanation
Indices: 95549322--95549647 Score: 404
Period size: 41 Copynumber: 8.0 Consensus size: 41
95549312 GTAAAACACA
* * ** * * *
95549322 GAGCAATAGCGGCGTTTTTGTTAACCCGCCACTAAAA-ACA
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* * * *
95549362 GAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAA-ACA
1 GAGCAATAGCGGCG-CTTTTGGTAAAACGCCGCTAAAAGTCG
* *
95549403 GATCAATAGCGACGCTTTTGGTAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
*
95549444 GAGCAATAGCGGCGCTTTTGGTAAAACGCTGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* * **
95549485 GAGCAATAGCAGCGCTTCTAATAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* * * * **
95549526 GAACAGTAGTGGCGCTTTTGGTAAAACGCCGCAAAAAGTTA
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
95549567 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
*
95549608 GAGCAATAGCGGCGCTTCTGGTAAAACGCCGCTAAAAGTC
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTC
95549648 ATATAACCCC
Statistics
Matches: 250, Mismatches: 34, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
40 35 0.14
41 215 0.86
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (41 bp):
GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
Found at i:95549740 original size:16 final size:17
Alignment explanation
Indices: 95549714--95549747 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
95549704 CTAAAATACT
*
95549714 AAACCCTTAAACCCTAA
1 AAACCCTTAAACACTAA
95549731 AAACCC-TAAACACTAA
1 AAACCCTTAAACACTAA
95549747 A
1 A
95549748 GTATAACTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
AAACCCTTAAACACTAA
Found at i:95549754 original size:53 final size:54
Alignment explanation
Indices: 95549660--95549773 Score: 131
Period size: 53 Copynumber: 2.1 Consensus size: 54
95549650 ATAACCCCTA
* * * *
95549660 AAACCCCTAAACCCTAAAAAATCATGAACACTAATCTATAACCCCTAAAATACT
1 AAACCCCTAAACCCTAAAAAACCATAAACACTAAACTATAACCCCTAAAACACT
* * * ** *
95549714 AAACCCTTAAACCCT-AAAAACCCTAAACACTAAAGTATAACTTCTAAAACCCT
1 AAACCCCTAAACCCTAAAAAACCATAAACACTAAACTATAACCCCTAAAACACT
95549767 AAACCCC
1 AAACCCC
95549774 AAAAAACATC
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
53 35 0.71
54 14 0.29
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.19
Consensus pattern (54 bp):
AAACCCCTAAACCCTAAAAAACCATAAACACTAAACTATAACCCCTAAAACACT
Found at i:95549944 original size:15 final size:15
Alignment explanation
Indices: 95549900--95549950 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
95549890 CGGTTTAATA
*
95549900 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* * *
95549914 TCTATAGTTTAGGGT
1 TTTATGGTTTAAGGT
95549929 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
95549944 TTAATGG
1 TTTATGG
95549951 CCATGGGTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:95550511 original size:6 final size:7
Alignment explanation
Indices: 95550477--95550564 Score: 81
Period size: 7 Copynumber: 12.3 Consensus size: 7
95550467 CATTAAACCG
95550477 AAATAAA
1 AAATAAA
95550484 AAAT--A
1 AAATAAA
*
95550489 AACTCAAA
1 AAAT-AAA
95550497 AAATAAA
1 AAATAAA
95550504 AAATAAA
1 AAATAAA
95550511 AAATAAA
1 AAATAAA
*
95550518 AAATTTAA
1 AAA-TAAA
* *
95550526 AATTTAA
1 AAATAAA
*
95550533 AATTAAA
1 AAATAAA
95550540 AAATTAAA
1 AAA-TAAA
95550548 AAATTAAA
1 AAA-TAAA
95550556 AAATAAA
1 AAATAAA
95550563 AA
1 AA
95550565 CTTAAAAATT
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
5 4 0.06
7 42 0.60
8 24 0.34
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (7 bp):
AAATAAA
Found at i:95550511 original size:14 final size:14
Alignment explanation
Indices: 95550477--95550564 Score: 81
Period size: 15 Copynumber: 6.1 Consensus size: 14
95550467 CATTAAACCG
95550477 AAATAAAAAAT--A
1 AAATAAAAAATAAA
*
95550489 AACTCAAAAAATAAA
1 AAAT-AAAAAATAAA
95550504 AAATAAAAAATAAA
1 AAATAAAAAATAAA
* * *
95550518 AAATTTAAAATTTAA
1 AAA-TAAAAAATAAA
*
95550533 AATTAAAAAATTAAA
1 AAATAAAAAA-TAAA
95550548 AAATTAAAAAATAAA
1 AAA-TAAAAAATAAA
95550563 AA
1 AA
95550565 CTTAAAAATT
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
12 3 0.05
13 7 0.12
14 18 0.30
15 25 0.42
16 7 0.12
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (14 bp):
AAATAAAAAATAAA
Found at i:95550570 original size:8 final size:7
Alignment explanation
Indices: 95550495--95550574 Score: 79
Period size: 7 Copynumber: 11.0 Consensus size: 7
95550485 AATAAACTCA
*
95550495 AAAAATA
1 AAAAATT
*
95550502 AAAAATA
1 AAAAATT
*
95550509 AAAAATA
1 AAAAATT
95550516 AAAAATT
1 AAAAATT
*
95550523 TAAAATT
1 AAAAATT
*
95550530 TAAAATT
1 AAAAATT
95550537 AAAAAATT
1 -AAAAATT
95550545 AAAAAATT
1 -AAAAATT
*
95550553 AAAAAAT
1 AAAAATT
95550560 AAAAACTT
1 AAAAA-TT
95550568 AAAAATT
1 AAAAATT
95550575 TAATATTTAA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
7 46 0.70
8 20 0.30
ACGTcount: A:0.74, C:0.01, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:95550577 original size:8 final size:8
Alignment explanation
Indices: 95550516--95550577 Score: 60
Period size: 8 Copynumber: 8.2 Consensus size: 8
95550506 ATAAAAAATA
95550516 AAAAATTT
1 AAAAATTT
95550524 -AAAATTT
1 AAAAATTT
95550531 -AAAA-TT
1 AAAAATTT
*
95550537 AAAAAATT
1 AAAAATTT
*
95550545 AAAAAATT
1 AAAAATTT
*
95550553 AAAAA-AT
1 AAAAATTT
*
95550560 AAAAACTT
1 AAAAATTT
95550568 AAAAATTT
1 AAAAATTT
95550576 AA
1 AA
95550578 TATTTAATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
6 2 0.04
7 21 0.44
8 25 0.52
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (8 bp):
AAAAATTT
Found at i:95550577 original size:23 final size:23
Alignment explanation
Indices: 95550495--95550584 Score: 62
Period size: 22 Copynumber: 4.0 Consensus size: 23
95550485 AATAAACTCA
*
95550495 AAAAATAAAAAA-TAAAAA-ATA
1 AAAAATAAAAAATTAAAAATTTA
** *
95550516 AAAAATTTAAAATTTAAAA-TTA
1 AAAAATAAAAAATTAAAAATTTA
*
95550538 AAAAATTAAAAAATTAAAAA-ATA
1 AAAAA-TAAAAAATTAAAAATTTA
* * * *
95550561 AAAACTTAAAAATTTAATATTTA
1 AAAAATAAAAAATTAAAAATTTA
95550584 A
1 A
95550585 TATTTTAGTC
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
21 10 0.19
22 23 0.43
23 20 0.38
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (23 bp):
AAAAATAAAAAATTAAAAATTTA
Found at i:95550584 original size:15 final size:15
Alignment explanation
Indices: 95550494--95550584 Score: 76
Period size: 15 Copynumber: 6.1 Consensus size: 15
95550484 AAATAAACTC
* * *
95550494 AAAAAATAAAAAATA
1 AAAAATTAAAAATTT
*
95550509 AAAAATAAAAAATTT
1 AAAAATTAAAAATTT
* *
95550524 -AAAATTTAAAATTA
1 AAAAATTAAAAATTT
*
95550538 AAAAATTAAAAAATT
1 AAAAATTAAAAATTT
* *
95550553 AAAAAATAAAAACTT
1 AAAAATTAAAAATTT
* *
95550568 AAAAATTTAATATTT
1 AAAAATTAAAAATTT
95550583 AA
1 AA
95550585 TATTTTAGTC
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
14 11 0.19
15 48 0.81
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAAATTAAAAATTT
Found at i:95550652 original size:26 final size:27
Alignment explanation
Indices: 95550623--95550685 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
95550613 TTCAATATTC
*
95550623 AAAATTAAAAAA-A-ATTCAAAAAGAGA
1 AAAATTAAAAAATATATT-AAAAAGAAA
*
95550649 AAAA-TAAAAAATATATTAAAAATAAA
1 AAAATTAAAAAATATATTAAAAAGAAA
*
95550675 AAAATTTAAAA
1 AAAATTAAAAA
95550686 TTAATCAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 7 0.23
26 16 0.52
27 8 0.26
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.21
Consensus pattern (27 bp):
AAAATTAAAAAATATATTAAAAAGAAA
Found at i:95550669 original size:18 final size:16
Alignment explanation
Indices: 95550648--95550685 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 16
95550638 TCAAAAAGAG
95550648 AAAAATAAAAAATATATT
1 AAAAATAAAAAA-AT-TT
95550666 AAAAATAAAAAAATTT
1 AAAAATAAAAAAATTT
95550682 AAAA
1 AAAA
95550686 TTAATCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.30
17 2 0.10
18 12 0.60
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAATAAAAAAATTT
Found at i:95552560 original size:4 final size:4
Alignment explanation
Indices: 95552551--95552593 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
95552541 AAAAATAATA
95552551 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
95552594 ACTATAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:95552610 original size:8 final size:8
Alignment explanation
Indices: 95552541--95552610 Score: 61
Period size: 8 Copynumber: 8.6 Consensus size: 8
95552531 CATTATTTTC
95552541 AAAAATAA
1 AAAAATAA
*
95552549 TAAAATAA
1 AAAAATAA
*
95552557 ATAAATAA
1 AAAAATAA
*
95552565 ATAAATAA
1 AAAAATAA
*
95552573 ATAAATAA
1 AAAAATAA
*
95552581 ATAAATAA
1 AAAAATAA
95552589 ATAAAACT-A
1 A-AAAA-TAA
*
95552598 TAAAATAA
1 AAAAATAA
95552606 AAAAA
1 AAAAA
95552611 ATATCATATC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
7 1 0.02
8 47 0.89
9 4 0.08
10 1 0.02
ACGTcount: A:0.77, C:0.01, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAAATAA
Found at i:95554566 original size:43 final size:42
Alignment explanation
Indices: 95554447--95554714 Score: 376
Period size: 43 Copynumber: 6.3 Consensus size: 42
95554437 TACCATTATT
* *
95554447 TTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTG-GAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
95554490 TTTAGCGGCGTTTGTAAAAAAGCGCCGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTGGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
95554532 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCGAAAGGTCATGGTC
1 TTTAGCGGCGTTTG-GAAAAAAGCGCCGCTAAAGGTCATGGTC
*
95554575 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCGAAAGGTCATGGTC
1 TTTAGCGGCGTTTG-GAAAAAAGCGCCGCTAAAGGTCATGGTC
*** * *
95554618 TTTAGCGGCGTTT-TTTAAAAGCGCCGCTAAAAGTCCTGGTC
1 TTTAGCGGCGTTTGGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
95554659 TTTAGCGGCGTTTGCGAAAAAAGCGCCGTTAAAGGTCATGGTA
1 TTTAGCGGCGTTTG-GAAAAAAGCGCCGCTAAAGGTCATGGTC
95554702 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
95554715 TTTCAAAAAA
Statistics
Matches: 201, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
41 35 0.17
42 38 0.19
43 128 0.64
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (42 bp):
TTTAGCGGCGTTTGGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:95554706 original size:127 final size:128
Alignment explanation
Indices: 95554447--95554714 Score: 430
Period size: 127 Copynumber: 2.1 Consensus size: 128
95554437 TACCATTATT
* * *
95554447 TTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTAAAAAAG
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCGAAAGGTCATGGTCTTTAGCGGCGTTTGTAAAAAAG
* * *
95554512 CGCCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGCGAAAAAAGCGCCGCGAAAGGTCATGGTC
66 CGCCGCTAAAAGTCATGGTCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCGAAAGGTCATGGTA
**
95554575 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCGAAAGGTCATGGTCTTTAGCGGCGTTT-TTTAAAAG
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCGAAAGGTCATGGTCTTTAGCGGCGTTTGTAAAAAAG
* **
95554639 CGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTGCGAAAAAAGCGCCGTTAAAGGTCATGGTA
66 CGCCGCTAAAAGTCATGGTCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCGAAAGGTCATGGTA
95554702 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
95554715 TTTCAAAAAA
Statistics
Matches: 129, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
127 76 0.59
128 53 0.41
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (128 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCGAAAGGTCATGGTCTTTAGCGGCGTTTGTAAAAAAG
CGCCGCTAAAAGTCATGGTCTTTAGCGGCGTTTGCGAAAAAAGCGCCGCGAAAGGTCATGGTA
Found at i:95554717 original size:84 final size:84
Alignment explanation
Indices: 95554447--95554714 Score: 376
Period size: 84 Copynumber: 3.2 Consensus size: 84
95554437 TACCATTATT
* * *
95554447 TTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTAAAAAAG
1 TTTAGCGGCGTTTGT-ATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGGAAAAAAG
*
95554512 CGCCGCTAAAGGTCATGGTT
65 CGCCGCTAAAGGTCATGGTA
* * *
95554532 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCGAAAGGTCATGGTCTTTAGCGGCGTTTGTGAAAAAA
1 TTTAGCGGCGTTTG-TATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTG-GAAAAAA
* *
95554597 GCGCCGCGAAAGGTCATGGTC
64 GCGCCGCTAAAGGTCATGGTA
* * *
95554618 TTTAGCGGCGTTT-TTTAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTGCGAAAAAAG
1 TTTAGCGGCGTTTGTATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTG-GAAAAAAG
*
95554682 CGCCGTTAAAGGTCATGGTA
65 CGCCGCTAAAGGTCATGGTA
95554702 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
95554715 TTTCAAAAAA
Statistics
Matches: 164, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
84 74 0.45
85 52 0.32
86 38 0.23
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (84 bp):
TTTAGCGGCGTTTGTATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGGAAAAAAGC
GCCGCTAAAGGTCATGGTA
Found at i:95554786 original size:16 final size:16
Alignment explanation
Indices: 95554762--95554792 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95554752 ATAGCGACGT
*
95554762 TTTTTGCGGCGCTTAC
1 TTTTAGCGGCGCTTAC
95554778 TTTTAGCGGCGCTTA
1 TTTTAGCGGCGCTTA
95554793 AAAACGCCGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.26, T:0.42
Consensus pattern (16 bp):
TTTTAGCGGCGCTTAC
Found at i:95562033 original size:13 final size:13
Alignment explanation
Indices: 95562015--95562039 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95562005 GAATAAACTG
95562015 TATTTAATGGCTA
1 TATTTAATGGCTA
95562028 TATTTAATGGCT
1 TATTTAATGGCT
95562040 GAACGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (13 bp):
TATTTAATGGCTA
Found at i:95562410 original size:21 final size:21
Alignment explanation
Indices: 95562351--95562411 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
95562341 GATTATATGA
* * *
95562351 ATTGGATTGAATATTGATTAT
1 ATTGAATTGATTATTGAATAT
95562372 ATTGAATTGATT-TATGAATAT
1 ATTGAATTGATTAT-TGAATAT
95562393 ATGTGAATTG-TTATTGAAT
1 AT-TGAATTGATTATTGAAT
95562412 TGAAATTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.03
21 25 0.74
22 8 0.24
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (21 bp):
ATTGAATTGATTATTGAATAT
Found at i:95563401 original size:45 final size:45
Alignment explanation
Indices: 95563226--95563402 Score: 286
Period size: 45 Copynumber: 3.9 Consensus size: 45
95563216 TACTACTACT
* *
95563226 GTTACCAATTCGGCACTTTGTGTGTCGAATATTGTTACTGCTA-C
1 GTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTATC
95563270 TGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTATC
1 -GTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTATC
95563316 GTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTATC
1 GTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTATC
* *
95563361 GTTACCGATTCAGCACTTTGTGTG-CTGAATACTGTTACTGTT
1 GTTACCGATTCGGCACTTTGTGTGTC-GAATATTGTTACTGTT
95563403 CCGGATTTGT
Statistics
Matches: 126, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
44 1 0.01
45 124 0.98
46 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (45 bp):
GTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTATC
Found at i:95563607 original size:18 final size:18
Alignment explanation
Indices: 95563586--95563856 Score: 149
Period size: 18 Copynumber: 14.6 Consensus size: 18
95563576 TAACTGATTA
95563586 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
95563604 TTACTGGATAATTGACTA
1 TTACTGAATAATTGACTG
*
95563622 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
95563640 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
95563658 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
95563676 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
* * *
95563694 TCACTGAATGAA-CGAATG
1 TTACTGAAT-AATTGACTG
* *
95563712 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
95563731 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
95563748 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
95563766 TTACTGGATAACCGATCAATTGATTG
1 TTACT-G---A---AT-AATTGACTG
* * ** *
95563792 ATACTGAATAACTGGTTA
1 TTACTGAATAATTGACTG
* *
95563810 TTATTGAATAATTGATTG
1 TTACTGAATAATTGACTG
* *
95563828 TTACCGAATAACTGACTG
1 TTACTGAATAATTGACTG
95563846 TTACTGAATAA
1 TTACTGAATAA
95563857 ATAATTGTTC
Statistics
Matches: 199, Mismatches: 34, Indels: 40
0.73 0.12 0.15
Matches are distributed among these distances:
17 19 0.10
18 145 0.73
19 18 0.09
22 2 0.01
25 3 0.02
26 12 0.06
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:95563639 original size:36 final size:36
Alignment explanation
Indices: 95563574--95563856 Score: 180
Period size: 36 Copynumber: 7.6 Consensus size: 36
95563564 AAAGGTATGA
*
95563574 AATAACTGATTATTACTGAATAATTGACTGTTACTG
1 AATAACTGAATATTACTGAATAATTGACTGTTACTG
* * * *
95563610 GATAATTGACTATTACTGGAT-ATTAGACTGTTACTG
1 AATAACTGAATATTACTGAATAATT-GACTGTTACTG
*
95563646 AATAACTGAATATTACTGAATAATTGA-TCATTACTG
1 AATAACTGAATATTACTGAATAATTGACT-GTTACTG
* * * * * *
95563682 AATAACTGATTGTCACTGAATGAA-CGAATGCTACTG
1 AATAACTGAATATTACTGAAT-AATTGACTGTTACTG
* *
95563718 AATAACTTAATAGTTACTGAAT-ATCTGA-TTTTACTG
1 AATAACTGAATA-TTACTGAATAAT-TGACTGTTACTG
* * * * *
95563754 AATAATTGACTGTTACTGGATAACCGATCAATTGATTGATACTG
1 AATAACTGAATATTACT-G---A---AT-AATTGACTGTTACTG
** * * *
95563798 AATAACTGGTTATTATTGAATAATTGATTGTTACCG
1 AATAACTGAATATTACTGAATAATTGACTGTTACTG
* *
95563834 AATAACTGACTGTTACTGAATAA
1 AATAACTGAATATTACTGAATAA
95563857 ATAATTGTTC
Statistics
Matches: 190, Mismatches: 39, Indels: 36
0.72 0.15 0.14
Matches are distributed among these distances:
35 10 0.05
36 134 0.71
37 18 0.09
39 1 0.01
40 1 0.01
42 2 0.01
43 4 0.02
44 20 0.11
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (36 bp):
AATAACTGAATATTACTGAATAATTGACTGTTACTG
Found at i:95563650 original size:54 final size:51
Alignment explanation
Indices: 95563586--95563776 Score: 168
Period size: 54 Copynumber: 3.6 Consensus size: 51
95563576 TAACTGATTA
* * *
95563586 TTACTGAATAATTGACTGTTACTGGATAATTGACTATTACTGGATATTAGACTG
1 TTACTGAATAATTGAATGTTACTGAATAATTGA-TATTACTGAATATT-GA-TG
* * *
95563640 TTACTGAATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTG
1 TTACTGAATAATTGAATGTTACTGAATAATTGAT-ATTACTGAAT-ATTGA-TG
* * * * *
95563694 TCACTGAATGAA-CGAATGCTACTGAATAACTTAATAGTTACTGAATATCTGATT
1 TTACTGAAT-AATTGAATGTTACTGAATAA-TTGATA-TTACTGAATAT-TGATG
* *
95563748 TTACTGAATAATTGACTGTTACTGGATAA
1 TTACTGAATAATTGAATGTTACTGAATAA
95563777 CCGATCAATT
Statistics
Matches: 111, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
53 3 0.03
54 88 0.79
55 20 0.18
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (51 bp):
TTACTGAATAATTGAATGTTACTGAATAATTGATATTACTGAATATTGATG
Found at i:95567420 original size:46 final size:46
Alignment explanation
Indices: 95567370--95567728 Score: 513
Period size: 46 Copynumber: 7.8 Consensus size: 46
95567360 CTCTCTGATG
* *
95567370 TGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATA
1 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACA
*
95567416 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATA
1 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACA
*
95567462 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATA
1 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACA
* *
95567508 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACG
1 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACA
* ** * *
95567554 GGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACG
1 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACA
* ** * *
95567600 GGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGACA
1 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACA
* *
95567646 TGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACATGACA
1 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACA
* * * *
95567692 -GAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
95567729 TCATGTCAAA
Statistics
Matches: 292, Mismatches: 21, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
45 32 0.11
46 260 0.89
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACA
Found at i:95568034 original size:16 final size:17
Alignment explanation
Indices: 95568013--95568045 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
95568003 ATGATGGTGC
95568013 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
95568029 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
95568046 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:95575882 original size:20 final size:20
Alignment explanation
Indices: 95575813--95575875 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
95575803 TGTCAAAATA
95575813 ACACGGGCGTGCGCCTGTAT
1 ACACGGGCGTGCGCCTGTAT
95575833 ACACGGGCGTGCGCCTGTAT
1 ACACGGGCGTGCGCCTGTAT
*
95575853 ACACGGGCGTACGCCTGTAT
1 ACACGGGCGTGCGCCTGTAT
95575873 ACA
1 ACA
95575876 TAGGCGTGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (20 bp):
ACACGGGCGTGCGCCTGTAT
Found at i:95580760 original size:20 final size:20
Alignment explanation
Indices: 95580733--95580779 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
95580723 TAAATATAAG
*
95580733 ATAATAAAC-AAATAAAAAC
1 ATAATAAACAAAAGAAAAAC
95580752 ATGAATAAACTAAAAGAAAAAC
1 AT-AATAAAC-AAAAGAAAAAC
95580774 ATAATA
1 ATAATA
95580780 CATGCAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 4 0.17
22 11 0.46
ACGTcount: A:0.70, C:0.09, G:0.04, T:0.17
Consensus pattern (20 bp):
ATAATAAACAAAAGAAAAAC
Found at i:95581446 original size:19 final size:19
Alignment explanation
Indices: 95581404--95581464 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
95581394 CATATCATAT
95581404 CATATCATATCTAAGATT-
1 CATATCATATCTAAGATTG
95581422 -ATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
95581440 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
95581459 CATATC
1 CATATC
95581465 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.41
19 24 0.59
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:95583352 original size:30 final size:31
Alignment explanation
Indices: 95583240--95583353 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
95583230 TTAGTCTTGA
*
95583240 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
95583270 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
95583301 CATGTCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
95583332 CATATCACTGGG-CAAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
95583354 ACTGTAAACG
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
30 14 0.18
31 65 0.82
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:95583424 original size:42 final size:42
Alignment explanation
Indices: 95583377--95583468 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
95583367 TGACCCTTAG
* *
95583377 GCCCATTTCAATGTCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
95583419 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
95583461 GCCCATTT
1 GCCCATTT
95583469 AGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:95583644 original size:25 final size:25
Alignment explanation
Indices: 95583616--95583685 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
95583606 CTCTTTTAAT
*
95583616 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
95583641 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
95583666 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
95583686 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:95584517 original size:27 final size:27
Alignment explanation
Indices: 95584487--95584551 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
95584477 GGGCATATTC
95584487 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
95584514 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
95584541 GTCTTTTTACC
1 GTCATTTTACC
95584552 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:95584635 original size:27 final size:27
Alignment explanation
Indices: 95584605--95584810 Score: 126
Period size: 27 Copynumber: 7.6 Consensus size: 27
95584595 GTAAATCTAC
*
95584605 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCAATAATTTTAT
* * *
95584632 AAACCAATGGTATTTCTATAATTTTTAG
1 AAACCAAGGGTATTTCAATAA-TTTTAT
* * * *
95584660 AAAGTCAAAGGTATTTCTATAATTTTGT
1 AAA-CCAAGGGTATTTCAATAATTTTAT
* * * * *
95584688 AAATCAGGGGTATTTTAGTAATTTTAC
1 AAACCAAGGGTATTTCAATAATTTTAT
*** ** *
95584715 AAATTGAGGGTATTTCGGTAATTTTAC
1 AAACCAAGGGTATTTCAATAATTTTAT
*
95584742 AAACC-AGTGGTATTTCAATAATTTTAC
1 AAACCAAG-GGTATTTCAATAATTTTAT
* * *** *
95584769 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAATAATTTTAT
* *
95584796 AAACTAGGGGTATTT
1 AAACCAAGGGTATTT
95584811 TGGTAATTCT
Statistics
Matches: 146, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.01
27 113 0.77
28 15 0.10
29 16 0.11
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAATAATTTTAT
Found at i:95584754 original size:54 final size:53
Alignment explanation
Indices: 95584611--95584818 Score: 166
Period size: 54 Copynumber: 3.8 Consensus size: 53
95584601 CTACAAACCA
* ** ** * *
95584611 AGGGTATTTCAATAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTCA
1 AGGGTATTTCGATAATTTTACAAACCAGGGGTATTT-TAGTAA-TTTTACAAA-T-T
* * ** *
95584667 AAGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTAGTAATTTTACAAATT
1 AGGGTATTTCGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATT
* * * * *
95584720 GAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTCAATAATTTTACAAACT
1 -AGGGTATTTCGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATT
* * * *
95584774 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 A-GGGTATTTCGATAATTTTACAAACCAGGGGTATTTTAGTAATT
95584819 CTATCCTACA
Statistics
Matches: 126, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
53 1 0.01
54 81 0.64
55 10 0.08
56 34 0.27
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATT
Found at i:95584790 original size:81 final size:81
Alignment explanation
Indices: 95584669--95584818 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
95584659 GAAAGTCAAA
* ** *
95584669 GGTATTTCTATAATTTTGTAAATCAGGGGTATTTTAGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCAATAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACTAG-GGGTATTTCGG
95584733 TAATTTTACAAACCAGT
65 TAATTTTACAAACCAGT
* *
95584750 GGTATTTCAATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCAATAATTTTACAAATC-AGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGG
95584814 TAATT
65 TAATT
95584819 CTATCCTACA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 1 0.02
81 58 0.95
82 2 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (81 bp):
GGTATTTCAATAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTTACAAACCAGT
Found at i:95584811 original size:27 final size:27
Alignment explanation
Indices: 95584693--95584818 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
95584683 TTTGTAAATC
*
95584693 AGGGGTATTTTAGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
95584719 TGAGGGTATTTCGGTAATTTTACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
* ***
95584747 AGTGGTATTTCAATAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
95584774 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
95584801 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
95584819 CTATCCTACA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 83 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:95584835 original size:54 final size:54
Alignment explanation
Indices: 95584668--95584851 Score: 147
Period size: 54 Copynumber: 3.4 Consensus size: 54
95584658 AGAAAGTCAA
** ** * * * * *
95584668 AGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTAGTAATTTTACAAA-TTG
1 AGGTATTTCGGTAATTTTACAAACCAGGGGTATTTCAATAATTCTACAAACTAG
* *
95584721 AGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTCAATAATTTTACAAACTAG
1 A-GGTATTTCGGTAATTTTACAAACCAGGGGTATTTCAATAATTCTACAAACTAG
* * * *** **
95584776 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTAC-AG
1 AGGTATTTCGGTAATTTTACAAACCAGGGGTATTTCAATAATTCTA-CAAACTAG
* *
95584830 AGGTATTTCAGTAATTTCACAA
1 AGGTATTTCGGTAATTTTACAA
95584852 TCGAGGGTAA
Statistics
Matches: 105, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
53 1 0.01
54 99 0.94
55 5 0.05
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (54 bp):
AGGTATTTCGGTAATTTTACAAACCAGGGGTATTTCAATAATTCTACAAACTAG
Found at i:95584835 original size:81 final size:81
Alignment explanation
Indices: 95584668--95584851 Score: 212
Period size: 81 Copynumber: 2.3 Consensus size: 81
95584658 AGAAAGTCAA
* ** *
95584668 AGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGG
1 AGGTATTTCAATAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATAGAGGGTATTTCGG
*
95584733 TAATTTTACAAACCAG
66 TAATTCTACAAACCAG
* * *
95584749 TGGTATTTCAATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 AGGTATTTCAATAATTTTACAAATC-AGGGGTATTTTAGTAATTTTACAAA-TAGAGGGTATTTC
**
95584812 GGTAATTCTATCCTA-CAG
64 GGTAATTCTA-CAAACCAG
* *
95584830 AGGTATTTCAGTAATTTCACAA
1 AGGTATTTCAATAATTTTACAA
95584852 TCGAGGGTAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 1 0.01
81 82 0.94
82 4 0.05
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (81 bp):
AGGTATTTCAATAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATAGAGGGTATTTCGG
TAATTCTACAAACCAG
Found at i:95584887 original size:27 final size:27
Alignment explanation
Indices: 95584850--95584992 Score: 182
Period size: 27 Copynumber: 5.3 Consensus size: 27
95584840 GTAATTTCAC
95584850 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
95584877 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* *
95584904 AATTGAGGGTAAAACGGTAATTTTTTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
95584931 AATCGAGGGTGAAACGGT-ATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* **
95584957 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
95584984 AATCGAGGG
1 AATCGAGGG
95584993 CATTTCAATA
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 23 0.23
27 78 0.77
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:95587120 original size:22 final size:23
Alignment explanation
Indices: 95587090--95587156 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 23
95587080 TGCACTATTG
*
95587090 AACAGAGAGCACTAAA-GTGCTA
1 AACAAAGAGCACTAAATGTGCTA
*
95587112 TACAAAGAGCAC-AAATGTGCTA
1 AACAAAGAGCACTAAATGTGCTA
** *
95587134 AACGGAGAGCACT-AATGAGCTA
1 AACAAAGAGCACTAAATGTGCTA
95587156 A
1 A
95587157 TAATCAGAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 3 0.08
22 34 0.92
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (23 bp):
AACAAAGAGCACTAAATGTGCTA
Found at i:95595116 original size:12 final size:12
Alignment explanation
Indices: 95595099--95595128 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
95595089 CCTACTTGAT
95595099 GATGAATTCGAC
1 GATGAATTCGAC
95595111 GATGAATTCGAC
1 GATGAATTCGAC
95595123 GATGAA
1 GATGAA
95595129 GAGTTGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (12 bp):
GATGAATTCGAC
Found at i:95597207 original size:15 final size:15
Alignment explanation
Indices: 95597189--95597236 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
95597179 TTTAAAACAC
*
95597189 ATTAAAATGAAATAA
1 ATTAAAATGAAAAAA
*
95597204 ATTACAATGAGAGAAAA
1 ATTAAAATGA-A-AAAA
*
95597221 ATTAATATGAAAAAA
1 ATTAAAATGAAAAAA
95597236 A
1 A
95597237 CGTAAATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
15 14 0.52
16 2 0.07
17 11 0.41
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.23
Consensus pattern (15 bp):
ATTAAAATGAAAAAA
Found at i:95597269 original size:75 final size:75
Alignment explanation
Indices: 95597209--95597360 Score: 216
Period size: 75 Copynumber: 2.0 Consensus size: 75
95597199 AATAAATTAC
* *
95597209 AATGAGAGAAAAATTAATATGA-AAAAAACGTAAATTAAAATGGAAAGAAAGATAATTTAAATGA
1 AATGAAAGAAAAATGAA-ATGAGAAAAAA-GTAAATTAAAATGGAAAGAAAGATAATTTAAATGA
95597273 AATGAGAAAAAA
64 AATGAGAAAAAA
* *** *
95597285 AATTAAATTTAAATGAAATGAGAAAAAATTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAA
1 AATGAAAGAAAAATGAAATGAGAAAAAAGTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAA
95597350 TGAGAAAAAA
66 TGAGAAAAAA
95597360 A
1 A
95597361 TTAAATTAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
75 51 0.75
76 17 0.25
ACGTcount: A:0.63, C:0.01, G:0.14, T:0.22
Consensus pattern (75 bp):
AATGAAAGAAAAATGAAATGAGAAAAAAGTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAA
TGAGAAAAAA
Found at i:95597313 original size:21 final size:22
Alignment explanation
Indices: 95597289--95597427 Score: 110
Period size: 21 Copynumber: 6.1 Consensus size: 22
95597279 AAAAAAAATT
95597289 AAATTTAAA-TGAAATGAGAAA
1 AAATTTAAATTGAAATGAGAAA
*
95597310 AAA-TTAAATTAAAATGGAAAGAAA
1 AAATTTAAATTGAAAT-G--AGAAA
95597334 GATAATTTAAA-TGAAATGAGAAA
1 -A-AATTTAAATTGAAATGAGAAA
* *
95597357 AAAATTAAATTAAAATAGGAAGAAA
1 AAATTTAAATTGAAAT--G-AGAAA
95597382 GATAATTTAAA-TGAAATGAGAAA
1 -A-AATTTAAATTGAAATGAGAAA
*
95597405 AAA-TTAAATTTAAATG-GAAA
1 AAATTTAAATTGAAATGAGAAA
95597425 AAA
1 AAA
95597428 GAATAATTTA
Statistics
Matches: 97, Mismatches: 7, Indels: 29
0.73 0.05 0.22
Matches are distributed among these distances:
20 17 0.18
21 23 0.24
22 8 0.08
23 10 0.10
24 7 0.07
25 7 0.07
26 13 0.13
27 12 0.12
ACGTcount: A:0.63, C:0.00, G:0.14, T:0.24
Consensus pattern (22 bp):
AAATTTAAATTGAAATGAGAAA
Found at i:95597362 original size:48 final size:47
Alignment explanation
Indices: 95597272--95597496 Score: 305
Period size: 48 Copynumber: 4.7 Consensus size: 47
95597262 AATTTAAATG
*
95597272 AAATGAGAAAAAAAATTAAATTTAAATGAAATGAG-AAAAAATTAAATTA
1 AAATG-GAAAAAAGA-T-AATTTAAATGAAATGAGAAAAAAATTAAATTA
95597321 AAATGGAAAGAAAGATAATTTAAATGAAATGAGAAAAAAATTAAATTA
1 AAATGGAAA-AAAGATAATTTAAATGAAATGAGAAAAAAATTAAATTA
* *
95597369 AAATAGGAAGAAAGATAATTTAAATGAAATGAG-AAAAAATTAAATTT
1 AAAT-GGAAAAAAGATAATTTAAATGAAATGAGAAAAAAATTAAATTA
* * *
95597416 AAATGGAAAAAAGAATAATTTAAATAAAATGAGAAAAAAAATAAATTT
1 AAATGGAAAAAAG-ATAATTTAAATGAAATGAGAAAAAAATTAAATTA
*
95597464 AAAT-GAAAAAAGATAATTTAAATAAAATG-GAAA
1 AAATGGAAAAAAGATAATTTAAATGAAATGAGAAA
95597497 TGGAAATGAA
Statistics
Matches: 165, Mismatches: 6, Indels: 14
0.89 0.03 0.08
Matches are distributed among these distances:
45 4 0.02
46 25 0.15
47 60 0.36
48 63 0.38
49 13 0.08
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (47 bp):
AAATGGAAAAAAGATAATTTAAATGAAATGAGAAAAAAATTAAATTA
Found at i:95597403 original size:95 final size:93
Alignment explanation
Indices: 95597290--95597496 Score: 319
Period size: 95 Copynumber: 2.2 Consensus size: 93
95597280 AAAAAAATTA
*
95597290 AATTTAAATGAAATGAGAAAAAATTAAATTAAAATGGAAAGAAAG-ATAATTTAAATGAAATGAG
1 AATTTAAATGAAATGAGAAAAAATTAAATTAAAATGGAAA-AAAGAATAATTTAAATAAAATGAG
* *
95597354 AAAAAAATTAAATTAAAATAGGAAGAAAGAT
65 AAAAAAAATAAATTAAAAT--GAAAAAAGAT
*
95597385 AATTTAAATGAAATGAGAAAAAATTAAATTTAAATGGAAAAAAGAATAATTTAAATAAAATGAGA
1 AATTTAAATGAAATGAGAAAAAATTAAATTAAAATGGAAAAAAGAATAATTTAAATAAAATGAGA
*
95597450 AAAAAAATAAATTTAAATGAAAAAAGAT
66 AAAAAAATAAATTAAAATGAAAAAAGAT
*
95597478 AATTTAAATAAAATG-GAAA
1 AATTTAAATGAAATGAGAAA
95597497 TGGAAATGAA
Statistics
Matches: 105, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
92 4 0.04
93 23 0.22
94 4 0.04
95 74 0.70
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.24
Consensus pattern (93 bp):
AATTTAAATGAAATGAGAAAAAATTAAATTAAAATGGAAAAAAGAATAATTTAAATAAAATGAGA
AAAAAAATAAATTAAAATGAAAAAAGAT
Found at i:95597435 original size:21 final size:21
Alignment explanation
Indices: 95597411--95597486 Score: 68
Period size: 26 Copynumber: 3.4 Consensus size: 21
95597401 GAAAAAATTA
95597411 AATTTAAATGGAAAAAAGAAT
1 AATTTAAATGGAAAAAAGAAT
95597432 AATTTAAATAAAATGAGAAAAAA-AAT
1 AA-TT---T-AAATG-GAAAAAAGAAT
95597458 AAATTTAAAT-GAAAAAAG-AT
1 -AATTTAAATGGAAAAAAGAAT
95597478 AATTTAAAT
1 AATTTAAAT
95597487 AAAATGGAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 18
0.72 0.00 0.28
Matches are distributed among these distances:
19 9 0.19
20 9 0.19
21 2 0.04
22 6 0.13
23 1 0.02
25 1 0.02
26 10 0.21
27 9 0.19
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.26
Consensus pattern (21 bp):
AATTTAAATGGAAAAAAGAAT
Found at i:95597474 original size:19 final size:18
Alignment explanation
Indices: 95597449--95597490 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
95597439 ATAAAATGAG
*
95597449 AAAAAAAATAAATTTAAAT
1 AAAAAAGAT-AATTTAAAT
95597468 GAAAAAAGATAATTTAAAT
1 -AAAAAAGATAATTTAAAT
95597487 AAAA
1 AAAA
95597491 TGGAAATGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 9 0.43
20 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (18 bp):
AAAAAAGATAATTTAAAT
Found at i:95597520 original size:47 final size:46
Alignment explanation
Indices: 95597272--95597523 Score: 276
Period size: 47 Copynumber: 5.3 Consensus size: 46
95597262 AATTTAAATG
*
95597272 AAATGAGAAAAAAAATTAAATTTAAATGAAATGAGAAAAAATTAAATTA
1 AAATGA-AAAAAAGA-T-AATTTAAATGAAATGAGAAAAAATTAAATTA
*
95597321 AAATGGAAAGAAAGATAATTTAAATGAAATGAGAAAAAAATTAAATTA
1 AAAT-GAAAAAAAGATAATTTAAATGAAATGAG-AAAAAATTAAATTA
* * *
95597369 AAATAGGAAGAAAGATAATTTAAATGAAATGAGAAAAAATTAAATTT
1 AAAT-GAAAAAAAGATAATTTAAATGAAATGAGAAAAAATTAAATTA
* * * *
95597416 AAATGGAAAAAAGAATAATTTAAATAAAATGAGAAAAAAAATAAATTT
1 AAATGAAAAAAAG-ATAATTTAAATGAAATGAG-AAAAAATTAAATTA
* * *
95597464 AAATG-AAAAAAGATAATTTAAATAAAATG-GAAATGGAAATGAAA-TG
1 AAATGAAAAAAAGATAATTTAAATGAAATGAGAAA---AAATTAAATTA
95597510 AAATGAAAAAAAGA
1 AAATGAAAAAAAGA
95597524 AAAAAGAAAA
Statistics
Matches: 184, Mismatches: 11, Indels: 18
0.86 0.05 0.08
Matches are distributed among these distances:
44 3 0.02
45 1 0.01
46 31 0.17
47 73 0.40
48 64 0.35
49 10 0.05
50 2 0.01
ACGTcount: A:0.64, C:0.00, G:0.13, T:0.23
Consensus pattern (46 bp):
AAATGAAAAAAAGATAATTTAAATGAAATGAGAAAAAATTAAATTA
Found at i:95597521 original size:95 final size:93
Alignment explanation
Indices: 95597272--95597523 Score: 285
Period size: 95 Copynumber: 2.6 Consensus size: 93
95597262 AATTTAAATG
* * * * *
95597272 AAATGAGAAAAAAAATTAAATTTAAATGAAATGAGAAAAAATTAAATTAAAATGGAAAGAAAGAT
1 AAAT-AGAAAAAAGA-T-AATTTAAATAAAATGAGAAAAAATGAAATTGAAAT-GAAAAAAAGAT
* *
95597337 AATTTAAATGAAATGAGAAAAAAATTAAATTA
62 AATTTAAATAAAATGAGAAAAAAAATAAATTA
* * * * *
95597369 AAATAGGAAGAAAGATAATTTAAATGAAATGAGAAAAAATTAAATTTAAATGGAAAAAAGAATAA
1 AAATA-GAAAAAAGATAATTTAAATAAAATGAGAAAAAATGAAATTGAAATGAAAAAAAG-ATAA
*
95597434 TTTAAATAAAATGAGAAAAAAAATAAATTT
64 TTTAAATAAAATGAGAAAAAAAATAAATTA
95597464 AAAT-GAAAAAAGATAATTTAAATAAAATG-GAAATGGAAATGAAA-TGAAATGAAAAAAAGA
1 AAATAGAAAAAAGATAATTTAAATAAAATGAGAAA---AAATGAAATTGAAATGAAAAAAAGA
95597524 AAAAAGAAAA
Statistics
Matches: 137, Mismatches: 13, Indels: 14
0.84 0.08 0.09
Matches are distributed among these distances:
92 4 0.03
93 24 0.18
94 20 0.15
95 76 0.55
96 2 0.01
97 11 0.08
ACGTcount: A:0.64, C:0.00, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATAGAAAAAAGATAATTTAAATAAAATGAGAAAAAATGAAATTGAAATGAAAAAAAGATAATT
TAAATAAAATGAGAAAAAAAATAAATTA
Found at i:95597863 original size:18 final size:19
Alignment explanation
Indices: 95597827--95597867 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
95597817 CGTATATTAG
*
95597827 GAAAAAAATAAATTTAAAT
1 GAAAAAAATAAATTGAAAT
*
95597846 GAAAAAAATTAA-TGAAAT
1 GAAAAAAATAAATTGAAAT
95597864 GAAA
1 GAAA
95597868 TGTTAAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.22
Consensus pattern (19 bp):
GAAAAAAATAAATTGAAAT
Found at i:95597866 original size:5 final size:5
Alignment explanation
Indices: 95597856--95597956 Score: 67
Period size: 5 Copynumber: 18.0 Consensus size: 5
95597846 GAAAAAAATT
* *
95597856 AATGA AATGA AATGTTA AATGAA ATATGA ATATGA AATGA AATGTA ATTTGT
1 AATGA AATGA AATG--A AATG-A A-ATGA A-ATGA AATGA AATG-A A-ATGA
* *
95597908 AATGA ATAAGA AATGA AATGA AATGTTA AATGA ATATAA AATGA AATGA
1 AATGA A-ATGA AATGA AATGA AATG--A AATGA A-ATGA AATGA AATGA
95597957 TGATTATGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
5 42 0.54
6 21 0.27
7 15 0.19
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (5 bp):
AATGA
Found at i:95597877 original size:12 final size:12
Alignment explanation
Indices: 95597858--95597969 Score: 50
Period size: 12 Copynumber: 9.0 Consensus size: 12
95597848 AAAAAATTAA
95597858 TGAAATGAAATG
1 TGAAATGAAATG
* *
95597870 TTAAATGAAATA
1 TGAAATGAAATG
95597882 TGAATATGAAA--
1 TGAA-ATGAAATG
* *
95597893 TGAAATGTAATT
1 TGAAATGAAATG
* *
95597905 TGTAATGAATAAG
1 TGAAATGAA-ATG
95597918 AAATGAAATGAAATG
1 ---TGAAATGAAATG
* *
95597933 TTAAATG-AATA
1 TGAAATGAAATG
*
95597944 TAAAATGAAATG
1 TGAAATGAAATG
*
95597956 ATGATTATGAAATG
1 -TGA-AATGAAATG
95597970 GAATGGAAGT
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
10 5 0.07
11 13 0.18
12 29 0.39
13 9 0.12
14 8 0.11
15 2 0.03
16 8 0.11
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (12 bp):
TGAAATGAAATG
Found at i:95597921 original size:28 final size:28
Alignment explanation
Indices: 95597860--95597956 Score: 97
Period size: 28 Copynumber: 3.2 Consensus size: 28
95597850 AAAATTAATG
*
95597860 AAATGAAATGTTAAATGAAATATGAATATG
1 AAATGAAATGTTAAATG-AATAAGAA-ATG
*
95597890 AAATGAAATGTAATTTGTAATGAATAAGAAATG
1 AAATGAAATG----TT-AAATGAATAAGAAATG
95597923 AAATGAAATGTTAAATGAATATA-AAATG
1 AAATGAAATGTTAAATGAATA-AGAAATG
95597951 AAATGA
1 AAATGA
95597957 TGATTATGAA
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
28 19 0.33
29 3 0.05
30 10 0.17
33 13 0.22
34 9 0.16
35 4 0.07
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (28 bp):
AAATGAAATGTTAAATGAATAAGAAATG
Found at i:95598078 original size:25 final size:25
Alignment explanation
Indices: 95598050--95598097 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
95598040 TTGAAATAAG
*
95598050 AAATAA-TTAAATTTAAATGGAAAAA
1 AAATAATTTAAA-TGAAATGGAAAAA
95598075 AAATAATTTAAATGAAATGGAAA
1 AAATAATTTAAATGAAATGGAAA
95598098 TGTAAATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.27
Consensus pattern (25 bp):
AAATAATTTAAATGAAATGGAAAAA
Found at i:95598120 original size:11 final size:11
Alignment explanation
Indices: 95598084--95598171 Score: 63
Period size: 11 Copynumber: 7.7 Consensus size: 11
95598074 AAAATAATTT
*
95598084 AAATGAAATGG
1 AAATGAAATGA
95598095 AAATGTAAATG-
1 AAATG-AAATGA
95598106 AAATGAAATGA
1 AAATGAAATGA
* *
95598117 AAATACAAATAA
1 AAAT-GAAATGA
95598129 AAATGAAATGGA
1 AAATGAAAT-GA
*
95598141 AATATAAATATG-
1 AA-ATGAA-ATGA
**
95598153 AAATGAAAAAA
1 AAATGAAATGA
95598164 AAATGAAA
1 AAATGAAA
95598172 GGACTTGTTA
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
10 6 0.10
11 30 0.48
12 19 0.31
13 5 0.08
14 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.15, T:0.19
Consensus pattern (11 bp):
AAATGAAATGA
Found at i:95598160 original size:5 final size:5
Alignment explanation
Indices: 95598084--95598118 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
95598074 AAAATAATTT
95598084 AAATG AAATGG AAATG TAAATG AAATG AAATG AAA
1 AAATG AAAT-G AAATG -AAATG AAATG AAATG AAA
95598119 ATACAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 18 0.64
6 10 0.36
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AAATG
Found at i:95598519 original size:17 final size:18
Alignment explanation
Indices: 95598485--95598523 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
95598475 TGTATATTAG
*
95598485 GAAAAAATAAATTTAAAT
1 GAAAAAATAAATTCAAAT
*
95598503 GAAAAAATTAA-TCAAAT
1 GAAAAAATAAATTCAAAT
95598520 GAAA
1 GAAA
95598524 TGTTAAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.23
Consensus pattern (18 bp):
GAAAAAATAAATTCAAAT
Found at i:95598676 original size:17 final size:17
Alignment explanation
Indices: 95598654--95598687 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
95598644 AAACAAAAAC
95598654 TGAAATCAGAAATAAAT
1 TGAAATCAGAAATAAAT
*
95598671 TGAAATGAGAAATAAAT
1 TGAAATCAGAAATAAAT
95598688 AAATTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.15, T:0.24
Consensus pattern (17 bp):
TGAAATCAGAAATAAAT
Found at i:95598688 original size:21 final size:20
Alignment explanation
Indices: 95598663--95598703 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
95598653 CTGAAATCAG
95598663 AAATAAATTGAAATGAGAAAT
1 AAATAAATTGAAATG-GAAAT
*
95598684 AAATAAATTTAAATGGAAAT
1 AAATAAATTGAAATGGAAAT
95598704 TTTTTTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (20 bp):
AAATAAATTGAAATGGAAAT
Found at i:95598720 original size:5 final size:5
Alignment explanation
Indices: 95598710--95598772 Score: 51
Period size: 5 Copynumber: 12.4 Consensus size: 5
95598700 AAATTTTTTT
* *
95598710 AATGA AATGA AGATGAA AATGA AATGA AATGA GAA--A AA-AA AAGGGA
1 AATGA AATGA A-ATG-A AATGA AATGA AATGA -AATGA AATGA AA-TGA
95598756 AATGA AATGA AATGA AA
1 AATGA AATGA AATGA AA
95598773 AAACAAAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
3 2 0.04
4 4 0.08
5 31 0.62
6 11 0.22
7 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.14
Consensus pattern (5 bp):
AATGA
Found at i:95598732 original size:17 final size:16
Alignment explanation
Indices: 95598710--95598773 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 16
95598700 AAATTTTTTT
95598710 AATGAAATGAAGATGAA
1 AATGAAATGAA-ATGAA
95598727 AATGAAATGAAATGAGA
1 AATGAAATGAAATGA-A
* *
95598744 AA--AAA--AAAGGGA
1 AATGAAATGAAATGAA
95598756 AATGAAATGAAATGAA
1 AATGAAATGAAATGAA
95598772 AA
1 AA
95598774 AACAAAATGT
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
12 3 0.08
13 4 0.11
14 3 0.08
15 3 0.08
16 11 0.29
17 14 0.37
ACGTcount: A:0.64, C:0.00, G:0.22, T:0.14
Consensus pattern (16 bp):
AATGAAATGAAATGAA
Found at i:95601462 original size:90 final size:90
Alignment explanation
Indices: 95601368--95601687 Score: 500
Period size: 90 Copynumber: 3.6 Consensus size: 90
95601358 TACGGATTAA
* * *
95601368 ATTAAATTTGCAGATACAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAA
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
95601433 GAAACCTTAAATCCTAAACAACTAC
66 GAAACCTTAAATCCTAAACAACTAC
* * * *
95601458 ATTAAATTTATAGATGTAAAAAAATACAAACATTCTAAGAAATTAATATACAAAAATATAAAAAT
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
*
95601523 GAAATCTTAAATCCTAAACAACTAC
66 GAAACCTTAAATCCTAAACAACTAC
* *
95601548 ATTAAATTTAAAAATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATA-AAAAAT
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
95601612 GAAACCTTAAATCCTAAACAACTAC
66 GAAACCTTAAATCCTAAACAACTAC
* *
95601637 ATTAAATTTACAGGTGTAAAAAAAATACAAACATTCTAAAGAAA-TAATACA
1 ATTAAATTTACAGATAT-AAAAAAATACAAACATTCT-AAGAAATTAATACA
95601688 ATTATTTTGA
Statistics
Matches: 210, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
89 43 0.20
90 161 0.77
91 6 0.03
ACGTcount: A:0.57, C:0.13, G:0.05, T:0.25
Consensus pattern (90 bp):
ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
GAAACCTTAAATCCTAAACAACTAC
Found at i:95602286 original size:74 final size:74
Alignment explanation
Indices: 95602190--95602328 Score: 235
Period size: 74 Copynumber: 1.9 Consensus size: 74
95602180 CCCGAAAAAG
*
95602190 GTGGTGCCAGCCATCAGTGTCCCAAAGT-AAAAAAAATGCATTGGGAGGCAAAAAATGTACTTGG
1 GTGGTGCCAACCATCAGTGTCCCAAAGTAAAAAAAAATGCATTGGGAGGC-AAAAATGTACTTGG
95602254 TGTCGGTCAT
65 TGTCGGTCAT
* *
95602264 GTGGTGCCAACCATCAGTGTCCCAAAGTAAAAAAAAATGCATTTGGAGGCGAAAATGTACTTGGT
1 GTGGTGCCAACCATCAGTGTCCCAAAGTAAAAAAAAATGCATTGGGAGGCAAAAATGTACTTGGT
95602329 ACCGGCCATT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
74 41 0.67
75 20 0.33
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (74 bp):
GTGGTGCCAACCATCAGTGTCCCAAAGTAAAAAAAAATGCATTGGGAGGCAAAAATGTACTTGGT
GTCGGTCAT
Found at i:95602609 original size:73 final size:72
Alignment explanation
Indices: 95602484--95602637 Score: 188
Period size: 75 Copynumber: 2.1 Consensus size: 72
95602474 AATTTATATG
* *
95602484 CACTGGTGCCAGCAATCAGTGTTCCAAAAAAATTTGCATTGGGAGCCTAAATTGTACTTAAATTT
1 CACTGGTGCCAGCAATCAGTGCTCCAAAAAAA-TTGCATTGGGAGCCAAAATTGTAC---AATTT
95602549 TTTTT-AAATA
62 TTTTTAAAATA
* * *
95602559 CACTGGTGCCGATC-ATTAGTGCTCCAAAAAAA-TGCATTGGGAGCCAAAATTTTACAATTTTTT
1 CACTGGTGCC-AGCAATCAGTGCTCCAAAAAAATTGCATTGGGAGCCAAAATTGTACAATTTTTT
95602622 TTAAAATA
65 TTAAAATA
*
95602630 CATTGGTG
1 CACTGGTG
95602638 TCGACCATCA
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
70 10 0.14
71 12 0.17
73 21 0.30
75 26 0.37
76 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (72 bp):
CACTGGTGCCAGCAATCAGTGCTCCAAAAAAATTGCATTGGGAGCCAAAATTGTACAATTTTTTT
TAAAATA
Found at i:95607196 original size:132 final size:132
Alignment explanation
Indices: 95606957--95607217 Score: 387
Period size: 132 Copynumber: 2.0 Consensus size: 132
95606947 TAAGTATCCA
* *
95606957 TTTAAAAATTCTTTAAAACGAAGGTGAAATCCGATATTTGGCAATTCGCGGAATAGTGCCCTAAC
1 TTTAAAAATTCTTTAAAACGAAGGTGAAATCCGATATTTAGAAATTCGCGGAATAGTGCCCTAAC
* * * * *
95607022 GTGTTGGGTTGTAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAGATTTCACTCATGC
66 GTGCTGGGTTGCAATTTCGCGGTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCACTCATGC
95607087 CT
131 CT
** * *
95607089 TTTAAAAATTCTTTAAAACGAAGGTGACGTGCGATATTTAGAAATTCGCGGAATCGTGCCCTAAC
1 TTTAAAAATTCTTTAAAACGAAGGTGAAATCCGATATTTAGAAATTCGCGGAATAGTGCCCTAAC
* * * *
95607154 GTGCTGGGTTGCAATTTCTCGGTTGCTTAAAATAATCAAATATTCCTTCAAAATTTCATTCATG
66 GTGCTGGGTTGCAATTTCGCGGTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCACTCATG
95607218 TCTTCTAATT
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 114 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (132 bp):
TTTAAAAATTCTTTAAAACGAAGGTGAAATCCGATATTTAGAAATTCGCGGAATAGTGCCCTAAC
GTGCTGGGTTGCAATTTCGCGGTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCACTCATGC
CT
Found at i:95607603 original size:132 final size:132
Alignment explanation
Indices: 95606988--95607619 Score: 429
Period size: 132 Copynumber: 4.8 Consensus size: 132
95606978 AGGTGAAATC
* * * * * *
95606988 CGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTGTTGGGTTGTAATTTCGCGTTTGCTCAAA
1 CGATATTTGGCAATTCGAGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
* * * ** * * ** *
95607053 ATAATCGAATATCCCTTCAAGATTTCACTCATGCCTTT-TAAAAATTCTTTAAAACGAAGGTGAC
66 ATAATCGAATATCTCTTTAAAATTTCACTCAT-ATTTTCTAAAAACTCTTTAAAACGAAAGCAAT
*
95607117 GTG
130 GTT
* * * * * *
95607120 CGATATTTAGAAATTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGGTTGCTT-AA
1 CGATATTTGGCAATTCGAGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTG-TTCAA
* * * * * **** *
95607184 AATAATCAAATAT-TCCTTCAAAATTTCATTCATGTCTTCTAATTTTTTTTTAAAACGAAAGCAA
65 AATAATCGAATATCT-CTTTAAAATTTCACTCATATTTTCTAAAAACTCTTTAAAACGAAAGCAA
*
95607248 TATT
129 TGTT
*** * * * ** *
95607252 CGGCGTTTGACAATTC-AAGAATCA-TGCGCTATCGTGCTGGGTTGTGATCTCTCGTTT-TCTCA
1 CGATATTTGGCAATTCGAGGAAT-AGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGT-TCA
* * * * * *
95607314 AAACAATTGAATATTTCTTT-ATATTCTCACTCATGTTTAT-TAAAAACACTTTAAAACG-AAGA
64 AAATAATCGAATATCTCTTTAAAATT-TCACTCATATTT-TCTAAAAACTCTTTAAAACGAAAG-
*
95607376 CGATGTT
126 CAATGTT
* * * * * * * ** * * * *
95607383 CAATGTTTGGCGATTTGA-GAATCGTGCCCTATCGCGGTGGGTTGCGCTTTTTCATTAGTTCGAA
1 CGATATTTGGCAATTCGAGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
* * * * * * * * * *
95607447 ACAATTGAAGATCCCTTCAGAATTTCACTCACATTTTCTAAAGACTCTTAAAAATGAAAGCAATG
66 ATAATCGAATATCTCTTTAAAATTTCACTCATATTTTCTAAAAACTCTTTAAAACGAAAGCAATG
95607512 TT
131 TT
* *
95607514 CGATATTTGGCAATTCGAGGAATAGTGCCCTATTGTGCTGGGTTGCAATCTCTCGTTTGTTCAAA
1 CGATATTTGGCAATTCGAGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
**
95607579 ATAATCGAATATCTCTTTGGAATTTCACTCATATTTTCTAA
66 ATAATCGAATATCTCTTTAAAATTTCACTCATATTTTCTAA
95607620 GGCGAGGCAA
Statistics
Matches: 376, Mismatches: 107, Indels: 34
0.73 0.21 0.07
Matches are distributed among these distances:
129 1 0.00
130 9 0.02
131 175 0.47
132 190 0.51
133 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (132 bp):
CGATATTTGGCAATTCGAGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
ATAATCGAATATCTCTTTAAAATTTCACTCATATTTTCTAAAAACTCTTTAAAACGAAAGCAATG
TT
Found at i:95619208 original size:44 final size:44
Alignment explanation
Indices: 95619145--95619914 Score: 709
Period size: 44 Copynumber: 17.1 Consensus size: 44
95619135 CGAATCCTGT
** *
95619145 AGATTTGGCGTCTCTGTATTTTCAGAGGGCAGATCGAAGATAGA
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
** *
95619189 AGATTTGGCGTCTCTGTATTGGTGGAGGGCAGATCGAATATAGC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* * * * *
95619233 AGATTCGGCGTCTCTGTATTGGTAGAGAGCAGATCAAAGATAGT
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* * * * *
95619277 ATATTTGGCGTCTCTGTGTTGACAGAGAGCAGATCGAAGATAAC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* *
95619321 AAATTTGGCGTCTCTATATTGGCAGAGGGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
95619365 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* * * ** * * ** **
95619409 AGATTTGGCATCTCTGTATTGGCCGCGTCTCTGTATTGGCGGAGGGC
1 AGATTTGGCGTCTCTGTATTGGCAGAG-GGCAG-A-TCGAAGATAGC
* ** ** * * * ** *
95619456 AGA-TCGAAGATAGCAG-ATTTGGCGTCTCTATATTGGCAGAGGGCAGATCGAAGATAGC
1 AGATTTGGCG-TCTCTGTA-TT-G-G---C-AGA-GGGCAGATCGAAGAT---AG----C
* * * *
95619514 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATTGAAGATAAC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* *
95619558 AGATTTGGCATCTCTGTATTGTCAGAGGGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* *
95619602 AGATTTGGCGTCTCTGTATTGGCGGAGGGCAGATCAAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* *
95619646 AGATTTGGCGTCTCTGTATTGGCGGAGGGTAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* * **
95619690 AGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAAT
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* * *
95619734 AGATTTGGCATCTTTGTATTGTCAGAGGGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* ** *
95619778 AGATTTGACGTCTCTGTATTGGTGGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
* * * * *
95619822 AGATTTGGCATCTCTGTGTTGACAGAGAGCAAATCGAAGAT-GAC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAG-C
* * * *
95619866 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAAATAAC
1 AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
95619910 AGATT
1 AGATT
95619915 GGTGTTCCCG
Statistics
Matches: 592, Mismatches: 111, Indels: 46
0.79 0.15 0.06
Matches are distributed among these distances:
43 1 0.00
44 531 0.90
45 2 0.00
46 4 0.01
47 14 0.02
48 2 0.00
49 1 0.00
51 15 0.03
52 4 0.01
53 3 0.01
54 1 0.00
56 1 0.00
57 1 0.00
58 9 0.02
59 3 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (44 bp):
AGATTTGGCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
Found at i:95619445 original size:61 final size:61
Alignment explanation
Indices: 95619372--95619492 Score: 215
Period size: 61 Copynumber: 2.0 Consensus size: 61
95619362 AGCAGATTTG
*
95619372 GCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCC
1 GCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTGGCC
* *
95619433 GCGTCTCTGTATTGGCGGAGGGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGGC
1 GCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTGGC
95619493 AGAGGGCAGA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (61 bp):
GCGTCTCTGTATTGGCAGAGGGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTGGCC
Found at i:95619458 original size:105 final size:105
Alignment explanation
Indices: 95619328--95619536 Score: 391
Period size: 105 Copynumber: 2.0 Consensus size: 105
95619318 AACAAATTTG
*
95619328 GCGTCTCTATATTGGCAGAGGGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAGG
1 GCGTCTCTATATTGGCAGAGGGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGGCAGAGG
95619393 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCC
66 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCC
* *
95619433 GCGTCTCTGTATTGGCGGAGGGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGGCAGAGG
1 GCGTCTCTATATTGGCAGAGGGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGGCAGAGG
95619498 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGC
66 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGC
95619537 AGAGAGCAGA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 101 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (105 bp):
GCGTCTCTATATTGGCAGAGGGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGGCAGAGG
GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCC
Found at i:95621869 original size:24 final size:24
Alignment explanation
Indices: 95621825--95621875 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
95621815 TTAAAATACC
* *
95621825 TTTCTTTGTGATTTATCAAAT-AT
1 TTTCTTTATGATATATCAAATAAT
*
95621848 TTTCTTTATGTATATATGAAATAAT
1 TTTCTTTATG-ATATATCAAATAAT
95621873 TTT
1 TTT
95621876 AGAAACTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 9 0.39
24 9 0.39
25 5 0.22
ACGTcount: A:0.29, C:0.06, G:0.08, T:0.57
Consensus pattern (24 bp):
TTTCTTTATGATATATCAAATAAT
Found at i:95623283 original size:132 final size:130
Alignment explanation
Indices: 95622664--95623294 Score: 429
Period size: 132 Copynumber: 4.8 Consensus size: 130
95622654 AGGCGGAATC
* * *
95622664 CGATATTTGGCAATTCGCG-GAATAGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAA
1 CGATATTTGGCAATTCG-GAGAATAGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGTTCAA
* * * * **
95622728 AATAATCGAATATCCCTTCAAGATTTCACTCATGCCTTTT-AAAAATTCTTTAAAACGAAGGTGA
65 AATAATCGAATATCTCTTCAA-ATTTCACTCAT--ATTTTCTAAAATTCTTTAAAACGAAAGAAA
* *
95622792 CGTG
127 TGTT
* ** *
95622796 CGATATTTAGCAATTCACAGAATCA-TGCCCTAACGTGCTGGGTTGCAATTTCTCGGTTGCTT-A
1 CGATATTTGGCAATTCGGAGAAT-AGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTG-TTCA
* * * * ** * * *
95622859 AAATAATCAAATAT-TCCTTCAAAATTTCATTCATGTCTTCTAATTTTTTTTAAAACGAAGGCAA
64 AAATAATCGAATATCT-CTTC-AAATTTCACTCATATTTTCTAAAATTCTTTAAAACGAAAGAAA
*
95622923 TATT
127 TGTT
*** * * * ** * *
95622927 CGGCGTTTGACAATTC-GAGAATCA-TGCCCTATCGTGTTGGGTTGTGATCTCTCGTTTGCTCAA
1 CGATATTTGGCAATTCGGAGAAT-AGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGTTCAA
* * * * * *
95622990 AACAATCAAATAT-TCCTTTATATTCTCACTCATGTTTAT-TAAAAATACTTTAAAACG-AAGAC
65 AATAATCGAATATCT-CTTCAAATT-TCACTCATATTT-TCT-AAAATTCTTTAAAACGAAAGA-
*
95623052 GATGTT
125 AATGTT
* * * * * * * * ** * * * *
95623058 CAATGTTTGGCGATT-TGAGAATCGTGCCCTACCGCGCTAGGTTGCGCTTTTTCATTAGTTCGAA
1 CGATATTTGGCAATTCGGAGAATAGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
* * * * * * *
95623122 ACAATTGAAGATCCCTTCAGAATTTCACTCACATTTTCTAAAGACTCTTAAAAACGAAAGAAATG
66 ATAATCGAATATCTCTTCA-AATTTCACTCATATTTTCTAAA-ATTCTTTAAAACGAAAGAAATG
95623187 TT
129 TT
* * *
95623189 CGATATTTGGCAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTGCAATCTCTCGTTTGTTCAAA
1 CGATATTTGGCAATTCGGAGAATAGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
*
95623254 ATAATCGAATATCTCTTCGGAATTTCACTCATATTTTCTAA
66 ATAATCGAATATCTCTTC-AAATTTCACTCATATTTTCTAA
95623295 GGCGAGGCAA
Statistics
Matches: 380, Mismatches: 99, Indels: 40
0.73 0.19 0.08
Matches are distributed among these distances:
129 5 0.01
130 74 0.19
131 142 0.37
132 155 0.41
133 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (130 bp):
CGATATTTGGCAATTCGGAGAATAGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
ATAATCGAATATCTCTTCAAATTTCACTCATATTTTCTAAAATTCTTTAAAACGAAAGAAATGTT
Found at i:95623975 original size:31 final size:31
Alignment explanation
Indices: 95623888--95623975 Score: 87
Period size: 31 Copynumber: 3.0 Consensus size: 31
95623878 AATGTACAAT
* *
95623888 TATATACAT-AAATTTTAA-TTTAATGT-AA
1 TATATACATGAAATTTTAATTTTGATTTAAA
* *
95623916 T-TATACGTGAAATTTTAATTGTCG-TTTAAA
1 TATATACATGAAATTTTAATT-TTGATTTAAA
*
95623946 TATATACTTGAAATTTTAATTTTGATTTAA
1 TATATACATGAAATTTTAATTTTGATTTAA
95623976 TCTAACACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
27 6 0.12
28 10 0.21
29 3 0.06
30 6 0.12
31 23 0.48
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.49
Consensus pattern (31 bp):
TATATACATGAAATTTTAATTTTGATTTAAA
Found at i:95629130 original size:19 final size:20
Alignment explanation
Indices: 95629087--95629140 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
95629077 TAAACTTTAA
* *
95629087 TAAAAAATATTAAAAATTAG
1 TAAAAAATATAAAAAAATAG
*
95629107 GAAAAAATATAAAAAAAT-G
1 TAAAAAATATAAAAAAATAG
**
95629126 TAAAATTTATAAAAA
1 TAAAAAATATAAAAA
95629141 CTTATAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (20 bp):
TAAAAAATATAAAAAAATAG
Found at i:95629146 original size:29 final size:29
Alignment explanation
Indices: 95629067--95629149 Score: 73
Period size: 29 Copynumber: 2.8 Consensus size: 29
95629057 ATAAGATTTA
*
95629067 TAAAATTTAT-TAAACTTTAATAAAAAATAT
1 TAAAATTTATAAAAAC-TT-ATAAAAAATAT
* * *
95629097 TAAAAATTAGGAAAAA-ATATAAAAAA-AT
1 TAAAATTTA-TAAAAACTTATAAAAAATAT
95629125 GTAAAATTTATAAAAACTTATAAAA
1 -TAAAATTTATAAAAACTTATAAAA
95629150 TGCATCAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
28 7 0.17
29 23 0.55
30 9 0.21
32 3 0.07
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (29 bp):
TAAAATTTATAAAAACTTATAAAAAATAT
Found at i:95629375 original size:38 final size:38
Alignment explanation
Indices: 95629333--95629427 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 38
95629323 TTGGTACGAT
* ****
95629333 AATTTTTATAATTTTTTTATGAATTTTATATTTCTTTA-
1 AATTTTTATAATTTTTTTACG-ATTTTATAAAAATTTAC
*
95629371 AATTTATTATAATTTTCTTACGATTTTATAAAAATTTAC
1 AATTT-TTATAATTTTTTTACGATTTTATAAAAATTTAC
*
95629410 AATTTTTATATTTTTTTT
1 AATTTTTATAATTTTTTT
95629428 TCTAATTTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
38 28 0.60
39 19 0.40
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (38 bp):
AATTTTTATAATTTTTTTACGATTTTATAAAAATTTAC
Found at i:95629389 original size:21 final size:21
Alignment explanation
Indices: 95629333--95629389 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 21
95629323 TTGGTACGAT
95629333 AATTTTTATAATTTT-TTTATG
1 AATTTTTATAATTTTCTTTA-G
95629354 AA-TTTTAT-A-TTTCTTTA-
1 AATTTTTATAATTTTCTTTAG
95629371 AATTTATTATAATTTTCTT
1 AATTT-TTATAATTTTCTT
95629390 ACGATTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
17 2 0.06
18 5 0.16
19 9 0.29
20 7 0.23
21 8 0.26
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (21 bp):
AATTTTTATAATTTTCTTTAG
Found at i:95629823 original size:14 final size:13
Alignment explanation
Indices: 95629799--95629836 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
95629789 TCAAGTACCC
95629799 AATTAAATAAAAA
1 AATTAAATAAAAA
*
95629812 AACTTAATTAAAAA
1 AA-TTAAATAAAAA
95629826 AATTAAA-AAAA
1 AATTAAATAAAA
95629837 TTCACCTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 4 0.18
13 6 0.27
14 12 0.55
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
AATTAAATAAAAA
Found at i:95630411 original size:51 final size:51
Alignment explanation
Indices: 95630348--95630473 Score: 171
Period size: 51 Copynumber: 2.5 Consensus size: 51
95630338 CAATCAAATC
* * * *
95630348 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* ** * *
95630399 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
95630450 TCTAAGATTATAAAATCATATCTT
1 TCTAAGATTATAAAATCATATCTT
95630474 TCAAGATCAT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:95634814 original size:41 final size:41
Alignment explanation
Indices: 95634659--95634804 Score: 226
Period size: 41 Copynumber: 3.6 Consensus size: 41
95634649 TGATTCAGTA
95634659 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTAT
95634700 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
* *
95634741 CACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TACTT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA--T
95634782 CACCGGCATTAAGCCTGCTAGAC
1 CACCGGCATTAAGCCTGCTAGAC
95634805 GAAACGTCTG
Statistics
Matches: 100, Mismatches: 2, Indels: 6
0.93 0.02 0.06
Matches are distributed among these distances:
39 2 0.02
40 5 0.05
41 93 0.93
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
Found at i:95647216 original size:7 final size:7
Alignment explanation
Indices: 95647204--95647231 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
95647194 AATGATACCA
95647204 TTTTTAT
1 TTTTTAT
95647211 TTTTTAT
1 TTTTTAT
95647218 TTTTTAT
1 TTTTTAT
95647225 TTTTTAT
1 TTTTTAT
95647232 AGCAATCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTAT
Found at i:95652391 original size:42 final size:43
Alignment explanation
Indices: 95652340--95652445 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
95652330 CCTGATCAGT
* *
95652340 ATACGACACATAAAGTGCCTAAAATGACACACGAGGTGGCTG-
1 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGA
** * * *
95652382 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG-A
95652426 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
95652446 GATCAGTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 35 0.67
44 17 0.33
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.16
Consensus pattern (43 bp):
ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGA
Found at i:95652392 original size:23 final size:21
Alignment explanation
Indices: 95652365--95652435 Score: 115
Period size: 21 Copynumber: 3.3 Consensus size: 21
95652355 TGCCTAAAAT
*
95652365 GACACACGAGGTGGCTGATAC
1 GACACACGAGGTGCCTGATAC
95652386 GACACACGAGGTGCCTGATAC
1 GACACACGAGGTGCCTGATAC
95652407 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG--ATAC
95652430 GACACA
1 GACACA
95652436 TAAAGTGCCT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
21 37 0.79
23 10 0.21
ACGTcount: A:0.32, C:0.27, G:0.28, T:0.13
Consensus pattern (21 bp):
GACACACGAGGTGCCTGATAC
Found at i:95653918 original size:12 final size:11
Alignment explanation
Indices: 95653866--95653914 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
95653856 TAATTCTCCC
95653866 TTTTTCTTTTCT
1 TTTTTC-TTTCT
*
95653878 TTCTTCTTTCT
1 TTTTTCTTTCT
*
95653889 TTGTTCTTTACT
1 TTTTTCTTT-CT
95653901 TTATTTCTTTCT
1 TT-TTTCTTTCT
95653913 TT
1 TT
95653915 ATTTGTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 13 0.41
12 13 0.41
13 6 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTTTCTTTCT
Found at i:95654327 original size:22 final size:23
Alignment explanation
Indices: 95654295--95654356 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 23
95654285 TTATGCACTA
*
95654295 TTAAACAGAGAGCACTAAA-GTG
1 TTAAACAGAGAGCACTAAATATG
*
95654317 TTATACAGAGAGCA-TAAATATG
1 TTAAACAGAGAGCACTAAATATG
95654339 TTAAACAGAGAGCACTAA
1 TTAAACAGAGAGCACTAA
95654357 TGTACTAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 4 0.11
22 28 0.80
23 3 0.09
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (23 bp):
TTAAACAGAGAGCACTAAATATG
Found at i:95663370 original size:22 final size:23
Alignment explanation
Indices: 95663345--95663390 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
95663335 CAACCAAACC
95663345 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
95663367 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
95663390 A
1 A
95663391 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:95663396 original size:23 final size:23
Alignment explanation
Indices: 95663352--95663396 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
95663342 ACCAATTCAA
*
95663352 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
95663375 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
95663397 CACATACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:95671141 original size:22 final size:23
Alignment explanation
Indices: 95671116--95671161 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
95671106 CAACCAAACC
95671116 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
95671138 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
95671161 A
1 A
95671162 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:95671167 original size:23 final size:23
Alignment explanation
Indices: 95671123--95671167 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
95671113 ACCAATTCAA
*
95671123 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
95671146 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
95671168 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:95672795 original size:14 final size:14
Alignment explanation
Indices: 95672772--95672870 Score: 58
Period size: 14 Copynumber: 6.8 Consensus size: 14
95672762 AAAAAAGGAT
*
95672772 ATATACATAATAAA
1 ATATATATAATAAA
*
95672786 ATATATATAA-AAG
1 ATATATATAATAAA
*
95672799 A-ATATATAAGAAA
1 ATATATATAATAAA
* *
95672812 ATAAATATTATAAGGA
1 ATATATATAATAA--A
*
95672828 ATGTTATATAATAAGA
1 AT-ATATATAATAA-A
*
95672844 TATAGTATGTAATAAA
1 -ATA-TATATAATAAA
*
95672860 ATATAAATAAT
1 ATATATATAAT
95672871 TATAATGAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
12 8 0.12
13 6 0.09
14 23 0.35
15 3 0.05
16 6 0.09
17 19 0.29
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (14 bp):
ATATATATAATAAA
Found at i:95673271 original size:21 final size:22
Alignment explanation
Indices: 95673241--95673283 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
95673231 CATTAAAGCT
95673241 AAATTAAAAAATA-AATAAAATG
1 AAATTAAAAAATATAA-AAAATG
95673263 AAATT-AAAAATATAAAAAATG
1 AAATTAAAAAATATAAAAAATG
95673284 CAAGAAGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (22 bp):
AAATTAAAAAATATAAAAAATG
Found at i:95686479 original size:14 final size:15
Alignment explanation
Indices: 95686456--95686589 Score: 64
Period size: 14 Copynumber: 8.9 Consensus size: 15
95686446 AAAAAGATAT
*
95686456 ATATACATAATAA-A
1 ATATATATAATAAGA
95686470 ATATATATAA-AAGA
1 ATATATATAATAAGA
95686484 ATATATA-AGA-AA-A
1 ATATATATA-ATAAGA
* *
95686497 ATAAATATTATAAGGA
1 ATATATATAATAA-GA
*
95686513 ATGTTATATAATAAGA
1 AT-ATATATAATAAGA
*
95686529 TATAGTATGTAATAA-A
1 -ATA-TATATAATAAGA
* * *
95686545 ATATAAATAATTATA
1 ATATATATAATAAGA
* * *
95686560 ATGAAATATAATATGGT
1 AT-ATATATAATA-AGA
95686577 ATATATATAATAA
1 ATATATATAATAA
95686590 TAGTAATAAT
Statistics
Matches: 89, Mismatches: 19, Indels: 23
0.68 0.15 0.18
Matches are distributed among these distances:
13 11 0.12
14 29 0.33
15 6 0.07
16 22 0.25
17 21 0.24
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.34
Consensus pattern (15 bp):
ATATATATAATAAGA
Found at i:95686954 original size:21 final size:22
Alignment explanation
Indices: 95686924--95686966 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
95686914 CATTAAAGCT
95686924 AAATTAAAAAATA-AATAAAATG
1 AAATTAAAAAATATAA-AAAATG
95686946 AAATT-AAAAATATAAAAAATG
1 AAATTAAAAAATATAAAAAATG
95686967 CAAGAGGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (22 bp):
AAATTAAAAAATATAAAAAATG
Found at i:95689556 original size:20 final size:20
Alignment explanation
Indices: 95689528--95689566 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
95689518 AAAATATTTT
95689528 TATTCAAAT-TTAATTATAAA
1 TATTCAAATATTAA-TATAAA
*
95689548 TATTTAAATATTAATATAA
1 TATTCAAATATTAATATAA
95689567 TTTTTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
TATTCAAATATTAATATAAA
Found at i:95690862 original size:8 final size:8
Alignment explanation
Indices: 95690835--95690878 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
95690825 TATCTAATTA
95690835 TAAATATT
1 TAAATATT
*
95690843 TAATTA-T
1 TAAATATT
95690850 T--ATATT
1 TAAATATT
95690856 TAAATATT
1 TAAATATT
95690864 TAAATATT
1 TAAATATT
95690872 TAAATAT
1 TAAATAT
95690879 AGTTTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 2 0.06
6 2 0.06
7 2 0.06
8 25 0.81
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TAAATATT
Found at i:95691172 original size:13 final size:13
Alignment explanation
Indices: 95691156--95691195 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
95691146 TCAAAAATAT
95691156 TTTTTCAAAA-CA
1 TTTTTCAAAAGCA
*
95691168 CTTTTCAAAAGCA
1 TTTTTCAAAAGCA
95691181 TTTTTCAAAAGCA
1 TTTTTCAAAAGCA
95691194 TT
1 TT
95691196 GCCAAATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (13 bp):
TTTTTCAAAAGCA
Found at i:95696605 original size:17 final size:17
Alignment explanation
Indices: 95696585--95696683 Score: 135
Period size: 17 Copynumber: 5.6 Consensus size: 17
95696575 CAATGATATG
95696585 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
95696602 CAATCTTAAATATGATTG
1 CAATCTTAGATATGA-TA
95696620 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
95696637 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
95696655 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
95696674 CAATCTTAGA
1 CAATCTTAGA
95696684 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 30 0.42
18 30 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:95696623 original size:35 final size:35
Alignment explanation
Indices: 95696577--95696681 Score: 174
Period size: 35 Copynumber: 2.9 Consensus size: 35
95696567 ATAATCTTCA
95696577 ATGATATGCAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
95696613 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
95696648 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTA
95696682 GAAGATATGA
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.76
36 5 0.08
37 11 0.17
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:95696625 original size:18 final size:18
Alignment explanation
Indices: 95696585--95696683 Score: 148
Period size: 18 Copynumber: 5.6 Consensus size: 18
95696575 CAATGATATG
95696585 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
* *
95696602 CAATCTTAAATATGATTG
1 CAATCTTAGATATGATTA
95696620 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
95696637 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
95696655 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
95696674 CAATCTTAGA
1 CAATCTTAGA
95696684 AGATATGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 30 0.41
18 32 0.44
19 11 0.15
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:95697225 original size:24 final size:23
Alignment explanation
Indices: 95697185--95697229 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
95697175 TTTTATATAA
95697185 TTATTATTCTTATAATTATATTTT
1 TTATTATTCTTATAATT-TATTTT
*
95697209 TTATTATATTTTA-AATTTATT
1 TTATTAT-TCTTATAATTTATT
95697230 ATTAAATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 11 0.58
25 4 0.21
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
TTATTATTCTTATAATTTATTTT
Found at i:95705793 original size:29 final size:29
Alignment explanation
Indices: 95705754--95705852 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 29
95705744 GAAGAACTCT
95705754 CACACACAGTGCCTCAATTACCGATCTCG
1 CACACACAGTGCCTCAATTACCGATCTCG
* ** **
95705783 CACACATAGTG-CTCGGTTAAAGGAAT-TCG
1 CACACACAGTGCCTCAATT-ACCG-ATCTCG
*
95705812 CACACACAGTGCCTCAATTACTGATCTCG
1 CACACACAGTGCCTCAATTACCGATCTCG
*
95705841 CACACATAGTGC
1 CACACACAGTGC
95705853 TCGGTTAAAG
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
28 7 0.13
29 41 0.75
30 7 0.13
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.22
Consensus pattern (29 bp):
CACACACAGTGCCTCAATTACCGATCTCG
Found at i:95705832 original size:58 final size:58
Alignment explanation
Indices: 95705718--95705884 Score: 273
Period size: 58 Copynumber: 2.9 Consensus size: 58
95705708 GCCCACTGAT
* * * *
95705718 CGATCTCGCACACATAGTGCTTGGTTGAA-GAACTCTCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC
95705775 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC
* *
95705833 TGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
95705885 TAATCATTCG
Statistics
Matches: 103, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 27 0.26
58 76 0.74
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC
Found at i:95705872 original size:29 final size:29
Alignment explanation
Indices: 95705780--95705881 Score: 109
Period size: 29 Copynumber: 3.5 Consensus size: 29
95705770 ATTACCGATC
*
95705780 TCGCACACATAGTGCTCGGTTAAAGGAAT
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
95705809 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
95705837 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
95705867 TTGCACACACAGTGC
1 TCGCACACACAGTGC
95705882 CTCTAATCAT
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
28 7 0.12
29 43 0.75
30 7 0.12
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:95706432 original size:43 final size:43
Alignment explanation
Indices: 95706038--95706431 Score: 590
Period size: 43 Copynumber: 9.2 Consensus size: 43
95706028 CCTTGCTCGA
** **
95706038 ATCACCGGCATTAAGCCTGCTAGGCACGAAAACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
95706081 ATCACCGGCATGAAGCCTGCTAGGCACGAAAGCCTGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
95706124 ATCACCGACACGAAGCCTACTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
95706167 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
95706210 ATTATCGGCACGAAGCCTACTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
95706253 ATCATCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
95706296 ATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
95706339 ATTATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
95706382 ATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
95706425 ATCACCG
1 ATCACCG
95706432 AGATTCATGC
Statistics
Matches: 318, Mismatches: 33, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 318 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:95720946 original size:27 final size:26
Alignment explanation
Indices: 95720906--95721010 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 26
95720896 AGGAAGCGTC
*
95720906 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
95720933 CTGGTGGCCCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
95720960 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* **
95720988 CTGGTGACTCTATCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
95721011 ATTCTGGCAG
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.04
27 47 0.70
28 16 0.24
29 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:95721010 original size:54 final size:54
Alignment explanation
Indices: 95720906--95721017 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
95720896 AGGAAGCGTC
* *
95720906 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCCCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACCCTACCACATATATCTATT
* * * *
95720960 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACCCTACCACATATATCTATT
95721014 CTGG
1 CTGG
95721018 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 35 0.69
55 16 0.31
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACCCTACCACATATATCTATT
Found at i:95725162 original size:14 final size:14
Alignment explanation
Indices: 95725140--95725173 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
95725130 GTTTAAAGAC
95725140 TTTTA-TTTATTAT
1 TTTTATTTTATTAT
95725153 TTTTATTTTATTAT
1 TTTTATTTTATTAT
95725167 TTTTATT
1 TTTTATT
95725174 GTTTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTATTTTATTAT
Found at i:95730959 original size:141 final size:138
Alignment explanation
Indices: 95730729--95731143 Score: 597
Period size: 141 Copynumber: 3.0 Consensus size: 138
95730719 TATCTCCCTG
* * * *
95730729 AGATAGCAGTAGAGCAGATCGAAGACGGCAAATCTTATCTTCCCGAGATAGTAGGGGAGCAGATT
1 AGATAGCAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATT
* *
95730794 TAAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAACAGACTGAAGATTGTAGATCTTATCTC
66 TGAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAGCAG-CTGAAGATTGTAGATCTTATCTC
95730859 CCTGAGATA
130 CCTGAGATA
*
95730868 GCAGATAGCAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTGCCGAGGTAGCAGGGGAGCAGA
1 --AGATAGCAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGA
* *
95730933 TTTGAGCCACCGGCCTTATCTCCTTGAGATAGCAAAGGAGCAGGCTAAAGATTGTAGATCTTATC
64 TTTGAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAGCA-GCTGAAGATTGTAGATCTTATC
*
95730998 TCTCTGAGAT-
128 TCCCTGAGATA
* ** **
95731008 AG--A--AGTGGAGCAGATCAAAGATAGTAAATCTTATCTTTTCGAGGTAGCAGGGGAGCAGATT
1 AGATAGCAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATT
* *
95731069 TGAGCCATCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCATGCTGAAGATTGTAGATCTTATCTC
66 TGAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAGCA-GCTGAAGATTGTAGATCTTATCTC
95731134 CCTGAGATA
130 CCTGAGATA
95731143 A
1 A
95731144 CAATGGAGTA
Statistics
Matches: 251, Mismatches: 21, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
134 120 0.48
135 1 0.00
136 1 0.00
138 2 0.01
141 126 0.50
142 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (138 bp):
AGATAGCAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATT
TGAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAGCAGCTGAAGATTGTAGATCTTATCTCC
CTGAGATA
Found at i:95731006 original size:45 final size:44
Alignment explanation
Indices: 95730947--95731151 Score: 114
Period size: 45 Copynumber: 4.6 Consensus size: 44
95730937 AGCCACCGGC
95730947 CTTATCTCCTTGAGATAGCAAAGGAGCAGGCTAAAGATTGTAGAT
1 CTTATCTCC-TGAGATAGCAAAGGAGCAGGCTAAAGATTGTAGAT
* * * *
95730992 CTTATCTCTCTGAGATAG-AAGTGGAGCA-GATCAAAGATAGTAAAT
1 CTTATCTC-CTGAGATAGCAA-AGGAGCAGGCT-AAAGATTGTAGAT
** * ** ** ** * *
95731037 CTTATCTTTTCGAGGTAGCAGGGGAGCAGATTTGAGCCA-T-CAG-C
1 CTTATCTCCT-GAGATAGCAAAGGAGCAGGCTAAAG--ATTGTAGAT
* * *
95731081 CTTATCTCCTTGAGGTAGCAAAGGAGCATGCTGAAGATTGTAGAT
1 CTTATCTCC-TGAGATAGCAAAGGAGCAGGCTAAAGATTGTAGAT
* *
95731126 CTTATCTCCCTGAGATAACAATGGAG
1 CTTATCT-CCTGAGATAGCAAAGGAG
95731152 TAAATCGGAG
Statistics
Matches: 116, Mismatches: 31, Indels: 26
0.67 0.18 0.15
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 32 0.28
45 76 0.66
46 5 0.04
47 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (44 bp):
CTTATCTCCTGAGATAGCAAAGGAGCAGGCTAAAGATTGTAGAT
Found at i:95731083 original size:134 final size:135
Alignment explanation
Indices: 95730712--95731177 Score: 641
Period size: 134 Copynumber: 3.4 Consensus size: 135
95730702 GGTGAATTCA
* *
95730712 TAGATCTTATCTCCCTGAGATAG-CAGTAGAGCAGATCGAAGACGGCAAATCTTATCTTCCCGAG
1 TAGATCTTATCTCCCTGAGATAGACAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCGAG
* * * * *
95730776 ATAGTAGGGGAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAACAGACTGAA
66 GTAGCAGGGGAGCAGATTTGAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAGCAGGCTGAA
95730841 GATTG
131 GATTG
95730846 TAGATCTTATCTCCCTGAGATAGCAGATAGCAGTGGAGCAGATCGAAGACGGTAAATCTTATCTT
1 TAGATCTTATCTCCCTGAGAT---AG--A-CAGTGGAGCAGATCGAAGACGGTAAATCTTATCTT
* *
95730911 GCCGAGGTAGCAGGGGAGCAGATTTGAGCCACCGGCCTTATCTCCTTGAGATAGCAAAGGAGCAG
60 CCCGAGGTAGCAGGGGAGCAGATTTGAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAGCAG
*
95730976 GCTAAAGATTG
125 GCTGAAGATTG
* * ** **
95730987 TAGATCTTATCTCTCTGAGATAGA-AGTGGAGCAGATCAAAGATAGTAAATCTTATCTTTTCGAG
1 TAGATCTTATCTCCCTGAGATAGACAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCGAG
* * *
95731051 GTAGCAGGGGAGCAGATTTGAGCCATCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCATGCTGAA
66 GTAGCAGGGGAGCAGATTTGAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAGCAGGCTGAA
95731116 GATTG
131 GATTG
* * * * *
95731121 TAGATCTTATCTCCCTGAGATA-ACAATGGAGTAAATCGGAGATGGTAAATCTTATCT
1 TAGATCTTATCTCCCTGAGATAGACAGTGGAGCAGATCGAAGACGGTAAATCTTATCT
95731178 CTATGAAGCA
Statistics
Matches: 296, Mismatches: 28, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
133 1 0.00
134 169 0.57
136 1 0.00
137 2 0.01
138 2 0.01
141 121 0.41
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (135 bp):
TAGATCTTATCTCCCTGAGATAGACAGTGGAGCAGATCGAAGACGGTAAATCTTATCTTCCCGAG
GTAGCAGGGGAGCAGATTTGAGCCACCAGCCTTATCTCCTTGAGATAGCAAAGGAGCAGGCTGAA
GATTG
Found at i:95731528 original size:44 final size:45
Alignment explanation
Indices: 95731480--95731598 Score: 143
Period size: 44 Copynumber: 2.7 Consensus size: 45
95731470 AGTCACCAGC
* ** * *
95731480 CTTATCTTCCTAAAGTTGAAGTGGAGCAGGTTGAAGTTA-CTAAT
1 CTTATCTTCCTAAAGTTGTAGTGGAGCAGACTGAAGATAGCAAAT
*
95731524 CTTATC-TCTCTAAGGTTGTAGTGGAGCAGACTGAAGATAGCAAAT
1 CTTATCTTC-CTAAAGTTGTAGTGGAGCAGACTGAAGATAGCAAAT
* *
95731569 CTTATCTCCCTGAAGTTGTAGTGGAGCAGA
1 CTTATCTTCCTAAAGTTGTAGTGGAGCAGA
95731599 TTAAAGCTAC
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
43 2 0.03
44 31 0.49
45 29 0.46
46 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (45 bp):
CTTATCTTCCTAAAGTTGTAGTGGAGCAGACTGAAGATAGCAAAT
Found at i:95731587 original size:45 final size:43
Alignment explanation
Indices: 95731480--95731613 Score: 142
Period size: 44 Copynumber: 3.0 Consensus size: 43
95731470 AGTCACCAGC
* * ** * *
95731480 CTTATCTTCCTAAAGTTGAAGTGGAGCAGGTTGAAGTTACTAAT
1 CTTATCTCCCT-AAGTTGTAGTGGAGCAGACTGAAGATACAAAT
*
95731524 CTTATCTCTCTAAGGTTGTAGTGGAGCAGACTGAAGATAGCAAAT
1 CTTATCTCCCTAA-GTTGTAGTGGAGCAGACTGAAGATA-CAAAT
* * *
95731569 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTACAAAT
1 CTTATCTCCCT-AAGTTGTAGTGGAGCAGACTGAAGATACAAAT
95731613 C
1 C
95731614 ACAAACCTTA
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
43 2 0.03
44 36 0.47
45 36 0.47
46 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (43 bp):
CTTATCTCCCTAAGTTGTAGTGGAGCAGACTGAAGATACAAAT
Done.