Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 295 of 316
Found at i:97321916 original size:12 final size:11
Alignment explanation
Indices: 97321877--97321915 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
97321867 AGTTATATTT
97321877 CTATTTTTTTA
1 CTATTTTTTTA
97321888 GCT-TTTTTTTA
1 -CTATTTTTTTA
97321899 CTATTATTTTTA
1 CTATT-TTTTTA
97321911 CTATT
1 CTATT
97321916 ACCATTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.08
11 10 0.40
12 13 0.52
ACGTcount: A:0.18, C:0.10, G:0.03, T:0.69
Consensus pattern (11 bp):
CTATTTTTTTA
Found at i:97321968 original size:12 final size:12
Alignment explanation
Indices: 97321951--97322015 Score: 69
Period size: 12 Copynumber: 5.3 Consensus size: 12
97321941 AGTTTATTTC
*
97321951 TTTTCTTTTTCT
1 TTTTCTTTTTAT
97321963 TTTTCTTTTTAT
1 TTTTCTTTTTAT
* *
97321975 CTTTATTTTTAT
1 TTTTCTTTTTAT
*
97321987 TTTTGTTTTTAAT
1 TTTTCTTTTT-AT
97322000 TGTTT-TTTTTAT
1 T-TTTCTTTTTAT
97322012 TTTT
1 TTTT
97322016 TTAGACATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
11 3 0.07
12 32 0.70
13 8 0.17
14 3 0.07
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTTAT
Found at i:97322014 original size:6 final size:6
Alignment explanation
Indices: 97321951--97322015 Score: 60
Period size: 6 Copynumber: 10.7 Consensus size: 6
97321941 AGTTTATTTC
* * * * *
97321951 TTTTCT TTTTCT TTTTCT TTTTAT CTTTAT TTTTAT TTTTGT TTTTAAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT-AT
97322000 TGTTT-T TTTTAT TTTT
1 T-TTTAT TTTTAT TTTT
97322016 TTAGACATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
5 3 0.06
6 43 0.84
7 2 0.04
8 3 0.06
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:97326688 original size:27 final size:27
Alignment explanation
Indices: 97326637--97326688 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
97326627 AATTTAGCCA
*
97326637 TTTTTATTTTATTACATTTTGTTTTTG
1 TTTTTATTTTATTACAATTTGTTTTTG
*
97326664 TTTTTGTTTTATTACTAATTT-TTTT
1 TTTTTATTTTATTAC-AATTTGTTTT
97326689 CTTTTATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (27 bp):
TTTTTATTTTATTACAATTTGTTTTTG
Found at i:97344467 original size:16 final size:17
Alignment explanation
Indices: 97344443--97344476 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
97344433 TAATAACAAG
*
97344443 ATTCGTCTTAGGT-TTC
1 ATTCCTCTTAGGTATTC
97344459 ATTCCTCTTAGGTATTC
1 ATTCCTCTTAGGTATTC
97344476 A
1 A
97344477 GGGGATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (17 bp):
ATTCCTCTTAGGTATTC
Found at i:97353340 original size:16 final size:17
Alignment explanation
Indices: 97353316--97353349 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
97353306 TAATAACAAG
*
97353316 ATTCGTCTTAGGT-TTC
1 ATTCCTCTTAGGTATTC
97353332 ATTCCTCTTAGGTATTC
1 ATTCCTCTTAGGTATTC
97353349 A
1 A
97353350 GGGGATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (17 bp):
ATTCCTCTTAGGTATTC
Found at i:97356783 original size:9 final size:9
Alignment explanation
Indices: 97356759--97356823 Score: 58
Period size: 9 Copynumber: 6.8 Consensus size: 9
97356749 CATGGGATTC
*
97356759 TGATATCTA
1 TGATATGTA
97356768 TGATATGTA
1 TGATATGTA
*
97356777 TGATATGAAAA
1 TGATATG--TA
97356788 TGATATGTA
1 TGATATGTA
*
97356797 TGATATGCACA
1 TGATATG--TA
97356808 TGATATGTA
1 TGATATGTA
*
97356817 CGATATG
1 TGATATG
97356824 CACATGATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
9 30 0.65
11 16 0.35
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (9 bp):
TGATATGTA
Found at i:97356824 original size:20 final size:20
Alignment explanation
Indices: 97356767--97356831 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
97356757 TCTGATATCT
* *
97356767 ATGATATGTATGATATGAAA
1 ATGATATGTATGATATGCAC
97356787 ATGATATGTATGATATGCAC
1 ATGATATGTATGATATGCAC
*
97356807 ATGATATGTACGATATGCAC
1 ATGATATGTATGATATGCAC
97356827 ATGAT
1 ATGAT
97356832 GTATTCATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (20 bp):
ATGATATGTATGATATGCAC
Found at i:97356845 original size:40 final size:39
Alignment explanation
Indices: 97356767--97356845 Score: 88
Period size: 40 Copynumber: 2.0 Consensus size: 39
97356757 TCTGATATCT
* *
97356767 ATGATATGTATGATATGAAAATGATATGTATGATATGCAC
1 ATGATATGTACGATATGAAAATGA-ATGTATCATATGCAC
* *
97356807 ATGATATGTACGATATGCACATG-ATGTATTCATAATGCA
1 ATGATATGTACGATATGAAAATGAATGTA-TCAT-ATGCA
97356846 TTGGGATGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
38 5 0.15
39 3 0.09
40 25 0.76
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (39 bp):
ATGATATGTACGATATGAAAATGAATGTATCATATGCAC
Found at i:97356936 original size:25 final size:25
Alignment explanation
Indices: 97356878--97356947 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 25
97356868 GAGGAAGTGC
*
97356878 AAAAGGGCTATGCCCCAG-TTACAG
1 AAAAGGGCTTTGCCCCAGTTTACAG
97356902 AAAAGGGCTTTGCCCCAGTTTATCA-
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
*
97356927 AAAAGGGCTTTTGGCCCAGTT
1 AAAAGGGC-TTTGCCCCAGTT
97356948 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.41
25 11 0.27
26 13 0.32
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:97356949 original size:25 final size:24
Alignment explanation
Indices: 97356878--97356954 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 24
97356868 GAGGAAGTGC
*
97356878 AAAAGGGCTATGCCCCAGTTA-CA
1 AAAAGGGCTTTGCCCCAGTTATCA
97356901 GAAAAGGGCTTTGCCCCAGTTTATCA
1 -AAAAGGGCTTTGCCCCAG-TTATCA
* *
97356927 AAAAGGGCTTTTGGCCCAGTTATTA
1 AAAAGGGC-TTTGCCCCAGTTATCA
97356952 AAA
1 AAA
97356955 GAGGCTAGGC
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
24 17 0.36
25 19 0.40
26 11 0.23
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATCA
Found at i:97356960 original size:25 final size:26
Alignment explanation
Indices: 97356902--97356960 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
97356892 CCAGTTACAG
97356902 AAAAG-GGC-TTTGCCCCAGTTTATC
1 AAAAGAGGCTTTTGCCCCAGTTTATC
* *
97356926 AAAA-AGGGCTTTTGGCCCAG-TTATT
1 AAAAGA-GGCTTTTGCCCCAGTTTATC
97356951 AAAAGAGGCT
1 AAAAGAGGCT
97356961 AGGCCTCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
24 4 0.14
25 15 0.52
26 10 0.34
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGAGGCTTTTGCCCCAGTTTATC
Found at i:97357205 original size:31 final size:31
Alignment explanation
Indices: 97357167--97357250 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
97357157 TTGTTACAGT
97357167 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
97357198 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
97357229 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
97357251 CTGAGATTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:97362923 original size:20 final size:20
Alignment explanation
Indices: 97362898--97362944 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
97362888 ATTCTGATAT
97362898 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
97362918 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
97362938 ACATGAT
1 ACATGAT
97362945 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:97363068 original size:25 final size:25
Alignment explanation
Indices: 97362991--97363061 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
97362981 AAGGAAGTGC
*
97362991 AAAAGGGCTATGCCCCAG-TTA-CAGA
1 AAAAGGGCTTTGCCCCAGTTTATC--A
97363016 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
97363041 AAAAGGGCTTTTGCCCTAGTT
1 AAAAGGGC-TTTGCCCCAGTT
97363062 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
25 26 0.63
26 14 0.34
27 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:97363074 original size:25 final size:26
Alignment explanation
Indices: 97363016--97363074 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
97363006 CAGTTACAGA
97363016 AAAAG-GGC-TTTGCCCCAGTTTATC
1 AAAAGAGGCTTTTGCCCCAGTTTATC
* *
97363040 AAAA-AGGGCTTTTGCCCTAG-TTATT
1 AAAAGA-GGCTTTTGCCCCAGTTTATC
97363065 AAAAGAGGCT
1 AAAAGAGGCT
97363075 AGGCCTCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
24 4 0.14
25 15 0.52
26 10 0.34
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGAGGCTTTTGCCCCAGTTTATC
Found at i:97363319 original size:31 final size:31
Alignment explanation
Indices: 97363281--97363364 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
97363271 TTGTTACAGT
97363281 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
97363312 AAAGGCTTTGTCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
97363343 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
97363365 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:97364526 original size:6 final size:6
Alignment explanation
Indices: 97364511--97364601 Score: 157
Period size: 6 Copynumber: 15.3 Consensus size: 6
97364501 ATTGAGTCCA
* *
97364511 TTTATC TTTATT TTTATC TTTATT TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
97364559 TTTATT TTTATT TTTATT TTTA-T TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
97364602 GTCTTTATAT
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
5 5 0.06
6 76 0.94
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:97367803 original size:61 final size:58
Alignment explanation
Indices: 97367691--97367816 Score: 189
Period size: 61 Copynumber: 2.1 Consensus size: 58
97367681 ATCACTTTAA
* * *
97367691 TATTAAATTAATATAATACTTATTAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATTAAATATTAAATC
*
97367749 TATTAAATTAATAGAATATTTATCTGCAAGATAAATATTAAATTAAATTAAATATTAAATC
1 TATTAAATTAATAGAATACTTAT-T--AAGATAAATATTAAATTAAATTAAATATTAAATC
97367810 TATTAAA
1 TATTAAA
97367817 ACAATATTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
58 21 0.34
59 1 0.02
61 39 0.64
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATTAAATATTAAATC
Found at i:97369573 original size:39 final size:38
Alignment explanation
Indices: 97369517--97369616 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 38
97369507 CGAATATAAT
* * * *
97369517 AATTATAATTACCATAATTATAATAATGTTTGACCAAA
1 AATTACAATTACAATAATTATAATAATATTCGACCAAA
* **
97369555 AACTTACAATTACAATAATTATAATAATATTCGATCGTA
1 AA-TTACAATTACAATAATTATAATAATATTCGACCAAA
*
97369594 AATTATAATTACAATAATTATAA
1 AATTACAATTACAATAATTATAA
97369617 CAAGGATTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 22 0.42
39 31 0.58
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (38 bp):
AATTACAATTACAATAATTATAATAATATTCGACCAAA
Found at i:97370818 original size:5 final size:5
Alignment explanation
Indices: 97370808--97370835 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
97370798 GTAACTGTGA
97370808 AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAA
97370836 AAGCACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:97375280 original size:6 final size:5
Alignment explanation
Indices: 97375250--97375279 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
97375240 CCAATTTGTG
97375250 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
97375280 AGCACACAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:97376833 original size:11 final size:12
Alignment explanation
Indices: 97376804--97376832 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
97376794 AGCAAAATAG
97376804 GTTTTTAGCGGC
1 GTTTTTAGCGGC
97376816 GTTTTTAGCGGC
1 GTTTTTAGCGGC
97376828 GTTTT
1 GTTTT
97376833 AATAGAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.14, G:0.31, T:0.48
Consensus pattern (12 bp):
GTTTTTAGCGGC
Found at i:97377087 original size:113 final size:114
Alignment explanation
Indices: 97376877--97377097 Score: 257
Period size: 113 Copynumber: 1.9 Consensus size: 114
97376867 GCGCTTCACC
* *
97376877 AAAACGCCGCAAAAGATCAAGCATTAGCGGCATTTTAAATAAAGCACCGCTAAAAGATTCAGCAA
1 AAAACGCCACAAAAGATCAAGCATTAGCGGCATTTTAAATAAAGCACCGCTAAAAGATTAAGCAA
*** * * * *
97376942 AACGACGTCGTTTACGTTGAGTTTCCACGGAATTAGTGGCGCTTAGGGA
66 AACGACGTCGTTTAAACTAAGGTTACACGGAATTAGCGGCGCTTAGGGA
* * * * * **
97376991 AAAACGCCACAAAATATC-AGCATTAGCGGCGTTTTAAGA-AAAGCGCCGCTACAATATTAAGGT
1 AAAACGCCACAAAAGATCAAGCATTAGCGGCATTTTAA-ATAAAGCACCGCTAAAAGATTAAGCA
* *
97377054 TAACGACGTCGTTTAAACTAAGGTTACATGGAATTAGCGGCGCT
65 AAACGACGTCGTTTAAACTAAGGTTACACGGAATTAGCGGCGCT
97377098 AAAAGGAAAA
Statistics
Matches: 88, Mismatches: 18, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
113 71 0.81
114 17 0.19
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (114 bp):
AAAACGCCACAAAAGATCAAGCATTAGCGGCATTTTAAATAAAGCACCGCTAAAAGATTAAGCAA
AACGACGTCGTTTAAACTAAGGTTACACGGAATTAGCGGCGCTTAGGGA
Found at i:97377861 original size:14 final size:14
Alignment explanation
Indices: 97377825--97377927 Score: 75
Period size: 14 Copynumber: 7.2 Consensus size: 14
97377815 GGCTTATGGT
*
97377825 TTAAGGGTT-GGGG
1 TTAATGGTTAGGGG
* *
97377838 TTTAAAGGTTATGGG
1 -TTAATGGTTAGGGG
*
97377853 TTAGTGGTTAGGGG
1 TTAATGGTTAGGGG
** *
97377867 TTAGGGGTTTATGGG
1 TTAATGG-TTAGGGG
*
97377882 TT-ATGGGTTATGGG
1 TTAAT-GGTTAGGGG
97377896 TTAATGGTTTAGGGG
1 TTAATGG-TTAGGGG
*
97377911 TTAATGCTTAGGGG
1 TTAATGGTTAGGGG
97377925 TTA
1 TTA
97377928 TTATTTTGTG
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
14 46 0.63
15 27 0.37
ACGTcount: A:0.18, C:0.01, G:0.42, T:0.39
Consensus pattern (14 bp):
TTAATGGTTAGGGG
Found at i:97377867 original size:29 final size:28
Alignment explanation
Indices: 97377830--97377927 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 28
97377820 ATGGTTTAAG
97377830 GGTT-GGGGTTTAAAGG-TTATGGGTTAGT
1 GGTTAGGGG-TTAAAGGTTTATGGGTTA-T
**
97377858 GGTTAGGGGTTAGGGGTTTATGGGTTAT
1 GGTTAGGGGTTAAAGGTTTATGGGTTAT
* * *
97377886 GGGTTATGGGTTAATGGTTTAGGGGTTAAT
1 -GGTTAGGGGTTAAAGGTTTATGGGTT-AT
*
97377916 GCTTAGGGGTTA
1 GGTTAGGGGTTA
97377928 TTATTTTGTG
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
28 10 0.17
29 46 0.79
30 2 0.03
ACGTcount: A:0.17, C:0.01, G:0.43, T:0.39
Consensus pattern (28 bp):
GGTTAGGGGTTAAAGGTTTATGGGTTAT
Found at i:97377874 original size:36 final size:35
Alignment explanation
Indices: 97377811--97377904 Score: 109
Period size: 36 Copynumber: 2.7 Consensus size: 35
97377801 AGGATTATGT
*
97377811 TTATGGCTTATGGTTTAAGGGTTGGGGTTTAAAGG
1 TTATGGGTTATGGTTTAAGGGTTGGGGTTTAAAGG
* **
97377846 TTATGGGTTAGTGG-TTAGGGGTTAGGGGTTTATGGG
1 TTATGGGTTA-TGGTTTAAGGGTT-GGGGTTTAAAGG
* *
97377882 TTATGGGTTATGGGTTAATGGTT
1 TTATGGGTTATGGTTTAAGGGTT
97377905 TAGGGGTTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
35 20 0.40
36 30 0.60
ACGTcount: A:0.17, C:0.01, G:0.40, T:0.41
Consensus pattern (35 bp):
TTATGGGTTATGGTTTAAGGGTTGGGGTTTAAAGG
Found at i:97378036 original size:100 final size:100
Alignment explanation
Indices: 97377924--97378269 Score: 304
Period size: 100 Copynumber: 3.4 Consensus size: 100
97377914 ATGCTTAGGG
* * *
97377924 GTTATTATTTTGTGGTTTAA-GATTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGT
1 GTTATTATTTTGTGGTTTAAGGA-TCAAGGGATATAGTTTAGGGTACTTTAGTAGGTGATATAGT
97377988 TTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
65 TTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
* * * ** * *
97378024 GTTATTATTTTGTGGTTTAAGGATC-AGAAGATATAGTTTAGGGT--TATGATTAATTCATACA-
1 GTTATTATTTTGTGGTTTAAGGATCAAG-GGATATAGTTTAGGGTACT-TTAGTAGGTGATATAG
* *
97378085 TTT--TGGGGTTAAGGTTTAGGGGTTATTG-TT--TT-GT
64 TTTAAT-GGTTTAAGGTTTA-GAG-TATTGATTAATTAGT
* * * * *
97378119 GGT-TTATGGTTAG-GAGATATAGTTCAGGGTTTAAGGGATATAGTTTAGGGTACTTTAGTAGGT
1 GTTATTAT--TTTGTG-G---T--TT-AAGGATCAAGGGATATAGTTTAGGGTACTTTAGTAGGT
97378182 GATATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
57 GATATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
*
97378226 GTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTTAGGGT
1 GTTATTATTTTGTGGTTTAAGGATCAAGGGATATAGTTTAGGGT
97378270 TATGATTAAT
Statistics
Matches: 187, Mismatches: 32, Indels: 54
0.68 0.12 0.20
Matches are distributed among these distances:
94 4 0.02
95 5 0.03
96 7 0.04
97 12 0.06
98 8 0.04
99 15 0.08
100 59 0.32
101 6 0.03
102 19 0.10
103 17 0.09
104 8 0.04
105 12 0.06
106 6 0.03
107 5 0.03
108 4 0.02
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (100 bp):
GTTATTATTTTGTGGTTTAAGGATCAAGGGATATAGTTTAGGGTACTTTAGTAGGTGATATAGTT
TAATGGTTTAAGGTTTAGAGTATTGATTAATTAGT
Found at i:97378174 original size:202 final size:202
Alignment explanation
Indices: 97377946--97378432 Score: 782
Period size: 202 Copynumber: 2.4 Consensus size: 202
97377936 TGGTTTAAGA
97377946 TTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAGTA
1 TTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAGTA
*
97378011 TTGATTAATTAGTGTTATTATTTTGTGGTTTAAGGATC-AGAAGATATAGTTTAGGGTTATGATT
66 TTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAG-AGATATAGTTTAGGGTTATGATT
* *
97378075 AATTCATACATTTTGGGGTTAAGGTTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGAGATATA
130 AATTCATACATTTTGGGGTTAAGGCTTAGGGGTTATTGTTTTATGGTTTATGGTTAGGAGATATA
97378140 GTTCAGGG
195 GTTCAGGG
* *
97378148 TTTAAGGGATATAGTTTAGGGTACTTTAGTAGGTGATATAGTTTAATGGTTTAAGGTTTAGAGTA
1 TTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAGTA
*
97378213 TTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTTAGGGTTATGATTA
66 TTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGAGATATAGTTTAGGGTTATGATTA
* *
97378278 ATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTATGGTTTATGGTTAGGGGATATAG
131 ATTCATACATTTTGGGGTTAAGGCTTAGGGGTTATTGTTTTATGGTTTATGGTTAGGAGATATAG
*
97378343 TTTAGGG
196 TTCAGGG
* * ** *
97378350 TTTAGGGGATATACTTTAGGGT--TTAAGGTTATAAGGATATAGTTTAATGGTTTAAGGTTAAGA
1 TTTAGGGGATATAGTTTAGGGTACTTTA-G-TA-GGGGATATAGTTTAATGGTTTAAGGTTTAGA
*
97378413 GTTTTGATTAATTAGTGTTA
63 GTATTGATTAATTAGTGTTA
97378433 ATAATATTAA
Statistics
Matches: 264, Mismatches: 17, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
200 3 0.01
201 1 0.00
202 212 0.80
203 48 0.18
ACGTcount: A:0.27, C:0.02, G:0.28, T:0.44
Consensus pattern (202 bp):
TTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAGTA
TTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGAGATATAGTTTAGGGTTATGATTA
ATTCATACATTTTGGGGTTAAGGCTTAGGGGTTATTGTTTTATGGTTTATGGTTAGGAGATATAG
TTCAGGG
Found at i:97378356 original size:21 final size:21
Alignment explanation
Indices: 97378322--97378374 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
97378312 TTGTTTTATG
*
97378322 GTTTATGG-TTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
97378342 GTTTAGGGTTTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
*
97378363 CTTTAGGGTTTA
1 GTTTAGGGTTTA
97378375 AGGTTATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.23, C:0.02, G:0.34, T:0.42
Consensus pattern (21 bp):
GTTTAGGGTTTAGGGGATATA
Found at i:97381331 original size:14 final size:13
Alignment explanation
Indices: 97381308--97381337 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
97381298 ATTACTATAA
97381308 TAATTATATGAAG
1 TAATTATATGAAG
97381321 TAATATATATGAAG
1 TAAT-TATATGAAG
97381335 TAA
1 TAA
97381338 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:97382022 original size:14 final size:15
Alignment explanation
Indices: 97382003--97382112 Score: 78
Period size: 17 Copynumber: 6.5 Consensus size: 15
97381993 AATCTTCAAT
97382003 GATATG-CAATCTTA
1 GATATGACAATCTTA
97382017 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
97382034 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
*
97382052 GATATTATATGCAATCTTA
1 GATA-T-GA--CAATCTTA
97382071 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
97382088 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
97382106 GATATGA
1 GATATGA
97382113 TATGCAATCT
Statistics
Matches: 81, Mismatches: 2, Indels: 22
0.77 0.02 0.21
Matches are distributed among these distances:
14 6 0.07
15 2 0.02
17 28 0.35
18 28 0.35
19 16 0.20
20 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:97382047 original size:35 final size:36
Alignment explanation
Indices: 97382001--97382126 Score: 186
Period size: 35 Copynumber: 3.5 Consensus size: 36
97381991 ATAATCTTCA
97382001 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
97382037 ATGAT-TGCAATCTTAGATATTATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
*
97382074 ATGATA--CAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-TACAATCTTAGAT
97382109 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
97382127 AGATATGATT
Statistics
Matches: 81, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
35 35 0.43
36 19 0.23
37 27 0.33
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:97382062 original size:54 final size:54
Alignment explanation
Indices: 97382001--97382126 Score: 243
Period size: 54 Copynumber: 2.3 Consensus size: 54
97381991 ATAATCTTCA
97382001 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
*
97382055 ATTATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
97382109 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
97382127 AGATATGATT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:97382133 original size:17 final size:19
Alignment explanation
Indices: 97382001--97382126 Score: 201
Period size: 19 Copynumber: 6.9 Consensus size: 19
97381991 ATAATCTTCA
97382001 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
97382020 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
97382037 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
97382055 ATTATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
97382074 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
97382091 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
97382109 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
97382127 AGATATGATT
Statistics
Matches: 99, Mismatches: 2, Indels: 12
0.88 0.02 0.11
Matches are distributed among these distances:
17 32 0.32
18 31 0.31
19 36 0.36
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:97382152 original size:22 final size:22
Alignment explanation
Indices: 97382001--97382149 Score: 94
Period size: 19 Copynumber: 7.8 Consensus size: 22
97381991 ATAATCTTCA
97382001 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
97382020 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
97382037 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
97382055 ATTATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
97382074 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
97382091 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
97382109 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
97382131 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
97382150 GATTTAATTT
Statistics
Matches: 116, Mismatches: 4, Indels: 16
0.85 0.03 0.12
Matches are distributed among these distances:
17 32 0.28
18 31 0.27
19 33 0.28
22 8 0.07
23 12 0.10
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:97385074 original size:15 final size:15
Alignment explanation
Indices: 97385054--97385083 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97385044 TCACATAATT
*
97385054 TACATAATTTACATA
1 TACATAACTTACATA
97385069 TACATAACTTACATA
1 TACATAACTTACATA
97385084 ATTTAAAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (15 bp):
TACATAACTTACATA
Found at i:97385161 original size:64 final size:63
Alignment explanation
Indices: 97385046--97385193 Score: 201
Period size: 64 Copynumber: 2.4 Consensus size: 63
97385036 CCAGCAACTC
* * *
97385046 ACATAATTTACATAATTTACATATACATAACTTACATAATTTAAAGTTCAAATTTCATAACAT
1 ACATAATTTACATAACTTACATAGACATAACTTACATAATTTAAAGATCAAATTTCATAACAT
* * *
97385109 ACATAATTTACTTAACTTACATAAGACATGACTTACATAATTTAAAGATCAAATTTCATAACTT
1 ACATAATTTACATAACTTACAT-AGACATAACTTACATAATTTAAAGATCAAATTTCATAACAT
* *
97385173 ATATGA--TACATAACTTACATA
1 ACATAATTTACATAACTTACATA
97385194 ATTTAAAGAC
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
61 1 0.01
62 13 0.17
63 20 0.27
64 41 0.55
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.36
Consensus pattern (63 bp):
ACATAATTTACATAACTTACATAGACATAACTTACATAATTTAAAGATCAAATTTCATAACAT
Found at i:97385168 original size:21 final size:21
Alignment explanation
Indices: 97385144--97385215 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 21
97385134 ACATGACTTA
97385144 CATAATTTAAAGATCAAATTT
1 CATAATTTAAAGATCAAATTT
* * *
97385165 CATAACTTATATGATACATAACTTA
1 CATAATTTA-AAGAT-CA-AA-TTT
*
97385190 CATAATTTAAAGACCAAATTT
1 CATAATTTAAAGATCAAATTT
97385211 CATAA
1 CATAA
97385216 GTTACATAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
21 15 0.38
22 6 0.15
23 4 0.10
24 5 0.12
25 10 0.25
ACGTcount: A:0.47, C:0.14, G:0.04, T:0.35
Consensus pattern (21 bp):
CATAATTTAAAGATCAAATTT
Found at i:97385189 original size:46 final size:46
Alignment explanation
Indices: 97385121--97385292 Score: 227
Period size: 46 Copynumber: 3.6 Consensus size: 46
97385111 ATAATTTACT
* *
97385121 TAACTTACATAAGACATGACTTACATAATTTAAAGATCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* * *
97385167 TAACTTATATGATACATAACTTACATAATTTAAAGACCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* *
97385213 TAAGTTACATAATTTACATAACTTACATAATAATTTAAAGTTCAAATTTCA
1 TAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCAAATTTCA
*
97385264 TAACTTACATAATACATAACTTGCATAAT
1 TAACTTACATAATACATAACTTACATAAT
97385293 ACATAACTTA
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
46 55 0.50
48 12 0.11
49 11 0.10
51 31 0.28
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (46 bp):
TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
Found at i:97385261 original size:110 final size:113
Alignment explanation
Indices: 97385046--97385372 Score: 391
Period size: 113 Copynumber: 2.9 Consensus size: 113
97385036 CCAGCAACTC
* * *
97385046 ACATAATTTACATAATTTACATATACATAACTTACATAATTTAAAGTTCAAATTTCATAACATAC
1 ACATAATTT-CATAACTTACATATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTAC
* * * *
97385111 ATAATTTACTTAACTTACATAAGACATGACTTACATAATTT-A-AAGAT
65 ATAATTTACATAACTTACATAATACATAACTTACATAATTTCATAACAT
* * *
97385158 -CA-AATTTCATAACTTATATGATACATAACTTACATAATTTAAAGACCAAATTTCATAAGTTAC
1 ACATAATTTCATAACTTACAT-ATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTAC
* *
97385221 ATAATTTACATAACTTACATAATA-ATTTAAAGTT-CA-AATTTCATAACTT
65 ATAATTTACATAACTTACATAATACA--T-AACTTACATAATTTCATAACAT
* * * * *
97385270 ACATAA-TACATAACTTGCATAATACATAACTTACATAATTTAAAGATCAAAATTCATGATTTAC
1 ACATAATTTCATAACTTACAT-ATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTAC
97385334 ATAATTTACATAACTTACATAATACATAACTTACATAAT
65 ATAATTTACATAACTTACATAATACATAACTTACATAAT
97385373 ACATGACTTA
Statistics
Matches: 183, Mismatches: 21, Indels: 21
0.81 0.09 0.09
Matches are distributed among these distances:
109 11 0.06
110 71 0.39
111 10 0.05
112 9 0.05
113 79 0.43
114 3 0.02
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (113 bp):
ACATAATTTCATAACTTACATATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACA
TAATTTACATAACTTACATAATACATAACTTACATAATTTCATAACAT
Found at i:97385283 original size:16 final size:16
Alignment explanation
Indices: 97385262--97385387 Score: 130
Period size: 16 Copynumber: 7.9 Consensus size: 16
97385252 GTTCAAATTT
97385262 CATAACTTACATAATA
1 CATAACTTACATAATA
*
97385278 CATAACTTGCATAATA
1 CATAACTTACATAATA
*
97385294 CATAACTTACATAATT
1 CATAACTTACATAATA
* ** * *
97385310 TA-AAGAT-CAAAATT
1 CATAACTTACATAATA
* *
97385324 CATGATTTACATAATTTA
1 CATAACTTACATAA--TA
97385342 CATAACTTACATAATA
1 CATAACTTACATAATA
97385358 CATAACTTACATAATA
1 CATAACTTACATAATA
*
97385374 CATGACTTACATAA
1 CATAACTTACATAA
97385388 CTTAATTATA
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
14 7 0.08
15 5 0.06
16 65 0.72
18 13 0.14
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:97385384 original size:9 final size:9
Alignment explanation
Indices: 97385041--97385391 Score: 94
Period size: 9 Copynumber: 39.7 Consensus size: 9
97385031 GTTCACCAGC
*
97385041 AACTCACAT
1 AACTTACAT
*
97385050 AATTTACAT
1 AACTTACAT
*
97385059 AATTTACAT
1 AACTTACAT
97385068 -A--TACAT
1 AACTTACAT
97385074 AACTTACAT
1 AACTTACAT
* *
97385083 AATTTAAAGTT
1 AACTTACA--T
* *
97385094 CAAATTTCAT
1 -AACTTACAT
*
97385104 AACATACAT
1 AACTTACAT
* *
97385113 AATTTACTT
1 AACTTACAT
97385122 AACTTACAT
1 AACTTACAT
*
97385131 AA--GACAT
1 AACTTACAT
*
97385138 GACTTACAT
1 AACTTACAT
* *
97385147 AATTTAAAGAT
1 AACTT--ACAT
* *
97385158 CAAATTTCAT
1 -AACTTACAT
*
97385168 AACTTATAT
1 AACTTACAT
*
97385177 GA--TACAT
1 AACTTACAT
97385184 AACTTACAT
1 AACTTACAT
* * *
97385193 AATTTAAAGACC
1 AACTT--ACA-T
* *
97385205 AAATTTCAT
1 AACTTACAT
*
97385214 AAGTTACAT
1 AACTTACAT
*
97385223 AATTTACAT
1 AACTTACAT
97385232 AACTTACAT
1 AACTTACAT
* **
97385241 AA-TAATTT
1 AACTTACAT
*
97385249 AAAGTT-CA-
1 -AACTTACAT
*
97385257 AA-TTTCAT
1 AACTTACAT
97385265 AACTTACAT
1 AACTTACAT
97385274 AA--TACAT
1 AACTTACAT
*
97385281 AACTTGCAT
1 AACTTACAT
97385290 AA--TACAT
1 AACTTACAT
97385297 AACTTACAT
1 AACTTACAT
* *
97385306 AATTTAAAGAT
1 AACTT--ACAT
*
97385317 CAAAATT-CAT
1 --AACTTACAT
* *
97385327 GATTTACAT
1 AACTTACAT
*
97385336 AATTTACAT
1 AACTTACAT
97385345 AACTTACAT
1 AACTTACAT
97385354 AA--TACAT
1 AACTTACAT
97385361 AACTTACAT
1 AACTTACAT
97385370 AA--TACAT
1 AACTTACAT
*
97385377 GACTTACAT
1 AACTTACAT
97385386 AACTTA
1 AACTTA
97385392 ATTATACTTA
Statistics
Matches: 248, Mismatches: 60, Indels: 68
0.66 0.16 0.18
Matches are distributed among these distances:
6 7 0.03
7 41 0.17
8 9 0.04
9 158 0.64
10 7 0.03
11 9 0.04
12 13 0.05
13 4 0.02
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (9 bp):
AACTTACAT
Found at i:97387428 original size:48 final size:48
Alignment explanation
Indices: 97387348--97387440 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
97387338 AGAATTCGGT
* * *
97387348 GTGAACTTTATACTGAAGTGCTTCCGAATGGGAAATGTCTGTTACGGC
1 GTGAACTTCATACTAAAGTACTTCCGAATGGGAAATGTCTGTTACGGC
*
97387396 GTGATCTTCATACTAAAGTACTTCCGAATGGGAAATGTCTGTTAC
1 GTGAACTTCATACTAAAGTACTTCCGAATGGGAAATGTCTGTTAC
97387441 CGCCTTCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (48 bp):
GTGAACTTCATACTAAAGTACTTCCGAATGGGAAATGTCTGTTACGGC
Found at i:97392139 original size:27 final size:27
Alignment explanation
Indices: 97392056--97392160 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
97392046 AGGAAGCGTC
*
97392056 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
97392083 CTAGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
97392110 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
97392137 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
97392161 GCAGTCTCGC
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 9 0.13
27 59 0.86
28 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:97394316 original size:3 final size:3
Alignment explanation
Indices: 97394308--97394348 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
97394298 CAGACCTCCT
* * *
97394308 TTA TTA TTA TTA TCA TTA TTA TTA TTC TTC TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
97394349 TTCCTGTGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:97395151 original size:44 final size:44
Alignment explanation
Indices: 97395048--97395184 Score: 166
Period size: 44 Copynumber: 3.0 Consensus size: 44
97395038 TCACCTCGTG
* *
97395048 AAAATTAAGTTTTGAGTCTCGTACCTAATTTCAAATTCAATTAC
1 AAAAGTAAGTTTTGAGTCTCGTACCTAATTTCAAACTCAATTAC
* * **
97395092 AAAAGTTTTGTAAGTTCTGAGTCTTGTATTTAATTTCAAACTCAATTAC
1 AAAA-----GTAAGTTTTGAGTCTCGTACCTAATTTCAAACTCAATTAC
*
97395141 AAAAGTAAGTTTTGAGTCTCCTACCTAATTTCAAACTCAATTAC
1 AAAAGTAAGTTTTGAGTCTCGTACCTAATTTCAAACTCAATTAC
97395185 TTATTCTCGA
Statistics
Matches: 77, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
44 39 0.51
49 38 0.49
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (44 bp):
AAAAGTAAGTTTTGAGTCTCGTACCTAATTTCAAACTCAATTAC
Found at i:97404348 original size:17 final size:17
Alignment explanation
Indices: 97404328--97404360 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
97404318 AATTGCCACA
97404328 TGAATTAAATTAATTTT
1 TGAATTAAATTAATTTT
*
97404345 TGAATTAACTTAATTT
1 TGAATTAAATTAATTT
97404361 GATAGTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
TGAATTAAATTAATTTT
Found at i:97412438 original size:53 final size:52
Alignment explanation
Indices: 97412366--97412516 Score: 162
Period size: 52 Copynumber: 2.9 Consensus size: 52
97412356 CTTCATACTG
**
97412366 ATGCCATAGCCCATATATGGTCTTATACGGAATCACATTATCACATCACACCA
1 ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TATCACATCACACCA
* * *** *
97412419 ATGCCATAGCCCAGCTATGGTATTATACGGGAAT-ACGA-ATCATATTGTACCG
1 ATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCAC-ATATCACATCACACCA
* * *
97412471 ATGCCATAGCCCGGCTATGGTCTTATACGGAAGCATATATCACATC
1 ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATC
97412517 TTTTCCGTCT
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
51 5 0.06
52 42 0.52
53 27 0.34
54 6 0.08
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (52 bp):
ATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCACACCA
Found at i:97412576 original size:20 final size:20
Alignment explanation
Indices: 97412553--97412615 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
97412543 GTGTCACACA
*
97412553 GGCATGTTTCAGGCCACATG
1 GGCATGTTCCAGGCCACATG
*
97412573 GGCATGTCCCAGGCCACATG
1 GGCATGTTCCAGGCCACATG
*
97412593 GGCATGTTCCAGGCCACACG
1 GGCATGTTCCAGGCCACATG
97412613 GGC
1 GGC
97412616 GTGTGCCCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (20 bp):
GGCATGTTCCAGGCCACATG
Found at i:97413151 original size:10 final size:10
Alignment explanation
Indices: 97413138--97413167 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
97413128 AGTGTAGAGA
97413138 AAAACTAAAG
1 AAAACTAAAG
97413148 AAAACCTAAAG
1 AAAA-CTAAAG
97413159 AAAACTAAA
1 AAAACTAAA
97413168 CCTAAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.13, G:0.07, T:0.10
Consensus pattern (10 bp):
AAAACTAAAG
Found at i:97416012 original size:24 final size:24
Alignment explanation
Indices: 97415949--97416000 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
97415939 TTTCTAGAAG
* * *
97415949 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
97415973 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
97415997 ATTT
1 ATTT
97416001 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:97419962 original size:18 final size:18
Alignment explanation
Indices: 97419939--97419974 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
97419929 GATATGATAC
97419939 TAAAAT-TATTAAAAAAAT
1 TAAAATATA-TAAAAAAAT
97419957 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
97419975 CAGGGAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:97420263 original size:22 final size:21
Alignment explanation
Indices: 97420228--97420303 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
97420218 AAAAGGTATC
* *
97420228 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
97420249 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
97420272 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
97420291 TGC-AATCATATCT
1 TACAAATCATATCT
97420304 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:97420288 original size:19 final size:19
Alignment explanation
Indices: 97420264--97420335 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
97420254 AATCATATCT
97420264 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97420283 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
97420301 TCTAAGATTG--TATCGTA
1 TCTAAGATTGCATATCATA
97420318 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
97420336 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 15 0.31
18 16 0.33
19 17 0.35
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97420325 original size:35 final size:37
Alignment explanation
Indices: 97420257--97420335 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
97420247 ATTACAAAAT
97420257 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
*
97420293 CA-ATCATATCTAAGATTG-TATCGTATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
97420328 CATATCAT
1 CATATCAT
97420336 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:97420762 original size:45 final size:45
Alignment explanation
Indices: 97420701--97420797 Score: 131
Period size: 45 Copynumber: 2.2 Consensus size: 45
97420691 ACTATCTTTG
*
97420701 ATCTGCTCCCCATCTAATACAGAGACACCAAATCTGTTATCTTCA
1 ATCTGCTCCCCATCTAATACAGAGACACCAAATCTGTCATCTTCA
* * ** **
97420746 ATCTTCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGG
1 ATCTGCTCCCCATCTAATACAGAGACACCAAATCTGTCATCTTCA
97420791 ATCTGCT
1 ATCTGCT
97420798 TCGATGTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCCCATCTAATACAGAGACACCAAATCTGTCATCTTCA
Found at i:97421012 original size:78 final size:78
Alignment explanation
Indices: 97420811--97421104 Score: 412
Period size: 78 Copynumber: 3.8 Consensus size: 78
97420801 ATGTAAACAC
* * *
97420811 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAAAAATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
97420876 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
97420889 AT-AAAGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
97420952 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
97420966 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* **
97421031 TAGATCTATTTCA
66 TGGATCTGCTTCA
* * * * **
97421044 CTGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
97421105 TGTTTCTTTG
Statistics
Matches: 191, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
77 70 0.37
78 121 0.63
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:97422359 original size:16 final size:17
Alignment explanation
Indices: 97422338--97422369 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
97422328 CCTCTCCATT
97422338 TTTTTATTTT-TATTTC
1 TTTTTATTTTCTATTTC
97422354 TTTTTATTTTCTATTT
1 TTTTTATTTTCTATTT
97422370 TTTCGAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTATTTTCTATTTC
Found at i:97432410 original size:18 final size:19
Alignment explanation
Indices: 97432387--97432423 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
97432377 GATATGATAC
*
97432387 TAAAAT-TATAAAAGAAAT
1 TAAAATATATAAAAAAAAT
97432405 TAAAATATATAAAAAAAAT
1 TAAAATATATAAAAAAAAT
97432424 CAGGGAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (19 bp):
TAAAATATATAAAAAAAAT
Found at i:97434069 original size:22 final size:21
Alignment explanation
Indices: 97434034--97434109 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
97434024 AAAAGGTATC
* *
97434034 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
97434055 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
97434078 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
97434097 TGC-AATCATATCT
1 TACAAATCATATCT
97434110 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:97434126 original size:35 final size:37
Alignment explanation
Indices: 97434063--97434160 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
97434053 ATTACAAAAT
97434063 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
97434099 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
97434134 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
97434161 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:97434168 original size:17 final size:19
Alignment explanation
Indices: 97434070--97434160 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
97434060 AATCATATCT
97434070 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97434089 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
97434107 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
97434124 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97434143 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
97434161 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97442864 original size:25 final size:25
Alignment explanation
Indices: 97442836--97442915 Score: 94
Period size: 25 Copynumber: 3.2 Consensus size: 25
97442826 TTGATTCCAT
97442836 ATTTTTTATTTGATACTTGAACTTG
1 ATTTTTTATTTGATACTTGAACTTG
* *
97442861 A-TTTTAATGTT--TAATTCGATACTTG
1 ATTTTTTAT-TTGATACTT-GA-ACTTG
97442886 ATTTTTTATTTGATACTTGAACTTG
1 ATTTTTTATTTGATACTTGAACTTG
97442911 ATTTT
1 ATTTT
97442916 AATGTTTAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
23 4 0.09
24 8 0.18
25 21 0.47
26 8 0.18
27 4 0.09
ACGTcount: A:0.25, C:0.07, G:0.11, T:0.56
Consensus pattern (25 bp):
ATTTTTTATTTGATACTTGAACTTG
Found at i:97442911 original size:50 final size:50
Alignment explanation
Indices: 97442836--97442936 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
97442826 TTGATTCCAT
97442836 ATTTTTTATTTGATACTTGAACTTGATTTTAATGTTTAATTCGATACTTG
1 ATTTTTTATTTGATACTTGAACTTGATTTTAATGTTTAATTCGATACTTG
97442886 ATTTTTTATTTGATACTTGAACTTGATTTTAATGTTTAATTCGATACTTG
1 ATTTTTTATTTGATACTTGAACTTGATTTTAATGTTTAATTCGATACTTG
97442936 A
1 A
97442937 GTTTGACTTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.27, C:0.08, G:0.12, T:0.53
Consensus pattern (50 bp):
ATTTTTTATTTGATACTTGAACTTGATTTTAATGTTTAATTCGATACTTG
Found at i:97442934 original size:25 final size:25
Alignment explanation
Indices: 97442856--97442936 Score: 96
Period size: 25 Copynumber: 3.2 Consensus size: 25
97442846 TGATACTTGA
97442856 ACTTGATTTTAATGTTTAATTCGAT
1 ACTTGATTTTAATGTTTAATTCGAT
* *
97442881 ACTTGATTTTTTAT-TTGATACTT-GA-
1 ACTTGA-TTTTAATGTT--TAATTCGAT
97442906 ACTTGATTTTAATGTTTAATTCGAT
1 ACTTGATTTTAATGTTTAATTCGAT
97442931 ACTTGA
1 ACTTGA
97442937 GTTTGACTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
23 4 0.09
24 8 0.17
25 22 0.48
26 8 0.17
27 4 0.09
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (25 bp):
ACTTGATTTTAATGTTTAATTCGAT
Found at i:97452028 original size:27 final size:27
Alignment explanation
Indices: 97451973--97452029 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
97451963 TGGTATTCAT
* * * *
97451973 TTGGTGAACTCCTAGTTCGCTGAAGCA
1 TTGGTGAACACCTAGTTCACCGAAACA
*
97452000 TTGGTGAACACCTTGTTCACCGAAACA
1 TTGGTGAACACCTAGTTCACCGAAACA
97452027 TTG
1 TTG
97452030 ACGAATCTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
TTGGTGAACACCTAGTTCACCGAAACA
Found at i:97461523 original size:15 final size:16
Alignment explanation
Indices: 97461503--97461535 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97461493 ATTAAAACTT
*
97461503 TGAAGA-ATTTTTAAA
1 TGAAGACATTTTAAAA
97461518 TGAAGACATTTTAAAA
1 TGAAGACATTTTAAAA
97461534 TG
1 TG
97461536 CATCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.36
Consensus pattern (16 bp):
TGAAGACATTTTAAAA
Found at i:97466959 original size:194 final size:194
Alignment explanation
Indices: 97466630--97467017 Score: 749
Period size: 194 Copynumber: 2.0 Consensus size: 194
97466620 TTTCTTGTGG
97466630 GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTTCTTTGATAAAATGCTTATCTATCTTGA
1 GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTTCTTTGATAAAATGCTTATCTATCTTGA
97466695 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
66 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
97466760 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
131 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
* *
97466824 GAATGTACTCTAGTGATATATTTCTGTTTCAGTTTTTTCTTTGATAAAATGCTTATCTATCTTGA
1 GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTTCTTTGATAAAATGCTTATCTATCTTGA
*
97466889 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTTTCACAG
66 TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
97466954 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
131 CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
97467018 TTCACAGATC
Statistics
Matches: 191, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
194 191 1.00
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (194 bp):
GAATGTACTCTAGCGATATATTTCTGTTTCAATTTTTTCTTTGATAAAATGCTTATCTATCTTGA
TGTGCTTGGTTCAATCATGATGTGCAAAGCTTTTTGCTATATTGAGAATCACATGATTGTCACAG
CACACTTGTAGAGATAGTGGTTGAAACCTGTAGCTCAATTTACAATCTTTTGTAGCCAAATTCC
Found at i:97470063 original size:23 final size:22
Alignment explanation
Indices: 97470012--97470063 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
97470002 CCTCGTCTTT
*
97470012 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
97470034 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
97470057 TTCTTTT
1 TTCTTTT
97470064 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:97473924 original size:31 final size:32
Alignment explanation
Indices: 97473883--97473942 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
97473873 AATATTACTA
97473883 TAGTGACAGCAATGAAGGCTGAAACAGGACTG
1 TAGTGACAGCAATGAAGGCTGAAACAGGACTG
* *
97473915 TAGTG-CAGCAATGAAGGTTGAAATAGGA
1 TAGTGACAGCAATGAAGGCTGAAACAGGA
97473943 GGGAAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.38, C:0.12, G:0.32, T:0.18
Consensus pattern (32 bp):
TAGTGACAGCAATGAAGGCTGAAACAGGACTG
Found at i:97476420 original size:20 final size:20
Alignment explanation
Indices: 97476395--97476433 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
97476385 TGTGAAGTTT
*
97476395 ATTGATGAGTATTTTATATA
1 ATTGATGAATATTTTATATA
97476415 ATTGATGAATATTTTATAT
1 ATTGATGAATATTTTATAT
97476434 TAGAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (20 bp):
ATTGATGAATATTTTATATA
Found at i:97482871 original size:21 final size:22
Alignment explanation
Indices: 97482838--97482878 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
97482828 TTCATTTATG
*
97482838 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
97482859 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
97482879 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:97483581 original size:18 final size:19
Alignment explanation
Indices: 97483568--97483605 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
97483558 TCCTTGATTT
97483568 TCCA-CCCGATCTTGATCA
1 TCCATCCCGATCTTGATCA
*
97483586 TGCATCCCGATCTTGATCA
1 TCCATCCCGATCTTGATCA
97483605 T
1 T
97483606 GCATTAGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (19 bp):
TCCATCCCGATCTTGATCA
Found at i:97483596 original size:19 final size:19
Alignment explanation
Indices: 97483572--97483609 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
97483562 TGATTTTCCA
97483572 CCCGATCTTGATCATGCAT
1 CCCGATCTTGATCATGCAT
97483591 CCCGATCTTGATCATGCAT
1 CCCGATCTTGATCATGCAT
97483610 TAGCTGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.32
Consensus pattern (19 bp):
CCCGATCTTGATCATGCAT
Found at i:97485466 original size:3 final size:3
Alignment explanation
Indices: 97485452--97485500 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
97485442 CGATAATATA
* ** *
97485452 AAT AAC AAT AAT AAT AAT AGC AAT AAT AAC AAT AAT AAT AAT GAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
97485498 AAT
1 AAT
97485501 CTGAATTTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:97485681 original size:12 final size:12
Alignment explanation
Indices: 97485666--97485698 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
97485656 AATAAATAAA
97485666 TAAATAAAATAT
1 TAAATAAAATAT
*
97485678 TAAATGAAATAT
1 TAAATAAAATAT
97485690 TAAATAAAA
1 TAAATAAAA
97485699 AAGTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:97489670 original size:17 final size:17
Alignment explanation
Indices: 97489648--97489721 Score: 76
Period size: 17 Copynumber: 4.1 Consensus size: 17
97489638 ACTAAACCGA
97489648 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
97489665 CCACTAACTCCATCACCC
1 CCACTAACTCCATCA-CC
*
97489683 TTTGCCACTAATTCCATCACC
1 ----CCACTAACTCCATCACC
* *
97489704 CCACTAACCCCATTACC
1 CCACTAACTCCATCACC
97489721 C
1 C
97489722 TACTTGCCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
17 30 0.62
18 2 0.04
21 2 0.04
22 14 0.29
ACGTcount: A:0.27, C:0.50, G:0.01, T:0.22
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:97489691 original size:39 final size:39
Alignment explanation
Indices: 97489648--97489722 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
97489638 ACTAAACCGA
*
97489648 CCACTAACTCCATCACCCCACTAACTCCATCACCCTTTG
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCTTTG
* *
97489687 CCACTAATTCCATCACCCCACTAACCCCATTACCCT
1 CCACTAACTCCATCACCCCACTAACCCCATCACCCT
97489723 ACTTGCCTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.27, C:0.49, G:0.01, T:0.23
Consensus pattern (39 bp):
CCACTAACTCCATCACCCCACTAACCCCATCACCCTTTG
Found at i:97490277 original size:15 final size:14
Alignment explanation
Indices: 97490252--97490283 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
97490242 TTTTAAATAT
97490252 TATATTATTATTTA
1 TATATTATTATTTA
97490266 TATATATATTATTTA
1 TATAT-TATTATTTA
97490281 TAT
1 TAT
97490284 TAAGCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATATTATTATTTA
Found at i:97490281 original size:19 final size:20
Alignment explanation
Indices: 97490239--97490286 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
97490229 TTTTATAAAC
97490239 ATTT-TTTAAATATTATATT
1 ATTTATTTAAATATTATATT
*
97490258 A-TTATTTATATA-TATATT
1 ATTTATTTAAATATTATATT
97490276 ATTTATATTAA
1 ATTTAT-TTAA
97490287 GCTATTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 9 0.38
19 12 0.50
20 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTATTTAAATATTATATT
Found at i:97495782 original size:11 final size:11
Alignment explanation
Indices: 97495766--97495791 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97495756 ATTCATTTTT
97495766 ATGGAATAAAA
1 ATGGAATAAAA
97495777 ATGGAATAAAA
1 ATGGAATAAAA
97495788 ATGG
1 ATGG
97495792 CCCAACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.23, T:0.19
Consensus pattern (11 bp):
ATGGAATAAAA
Found at i:97496483 original size:21 final size:22
Alignment explanation
Indices: 97496438--97496480 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
97496428 TTTTATGAAC
97496438 ATTTTTTAAATATTATATTATT
1 ATTTTTTAAATATTATATTATT
*
97496460 ATTTTTATATATATTAT-TTAT
1 ATTTTT-TAAATATTATATTAT
97496481 ATTAAGCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
ATTTTTTAAATATTATATTATT
Found at i:97496538 original size:18 final size:17
Alignment explanation
Indices: 97496451--97496540 Score: 55
Period size: 17 Copynumber: 5.2 Consensus size: 17
97496441 TTTTAAATAT
97496451 TATATTATTATTTT-TA
1 TATATTATTATTTTGTA
*
97496467 TATA-TATTA-TTTATA
1 TATATTATTATTTTGTA
*
97496482 TTAAGCTATT-TGTATTTTGTT
1 -T-A--TATTAT-TATTTTGTA
*
97496503 TATATTATT-TATTCGTA
1 TATATTATTAT-TTTGTA
97496520 TATATATATTATTTTGTA
1 TATAT-TATTATTTTGTA
97496538 TAT
1 TAT
97496541 CATTTATACT
Statistics
Matches: 57, Mismatches: 5, Indels: 22
0.68 0.06 0.26
Matches are distributed among these distances:
14 3 0.05
15 7 0.12
16 6 0.11
17 15 0.26
18 13 0.23
19 5 0.09
20 4 0.07
21 4 0.07
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTATTATTTTGTA
Found at i:97503519 original size:64 final size:64
Alignment explanation
Indices: 97503437--97503563 Score: 209
Period size: 64 Copynumber: 2.0 Consensus size: 64
97503427 CATTCATAGT
* * *
97503437 ACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGCATC
1 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCATC
* *
97503501 ACATCTAGCTCGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTGTTTGGCATAAGCAT
1 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCAT
97503564 ATATACATGA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (64 bp):
ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAACTATTTGGCATAAGCATC
Found at i:97503964 original size:134 final size:134
Alignment explanation
Indices: 97503810--97504075 Score: 444
Period size: 134 Copynumber: 2.0 Consensus size: 134
97503800 AAAGATACAG
* *
97503810 GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAA-AAGTTACAGATCTTATCTCCATGTATTG
1 GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAA-CTACAGATCTTATCTCCATGTATCG
* * *
97503874 GCTATGGAGCATATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGC
65 GCTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGC
97503939 CACTA
130 CACTA
*
97503944 GTCTTATCTTTCTGAAGTTGTAGGAAGCAGACTGAAGAACTACAGATCTTATCTCCATGTATCGG
1 GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAACTACAGATCTTATCTCCATGTATCGG
* *
97504009 CTATGGAGCAGATAAAAAATGGCGAGTTTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCC
66 CTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
97504074 AC
131 AC
97504076 CACCCTTATC
Statistics
Matches: 123, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
134 121 0.98
135 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (134 bp):
GTCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAACTACAGATCTTATCTCCATGTATCGG
CTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
ACTA
Found at i:97504209 original size:177 final size:176
Alignment explanation
Indices: 97503943--97504375 Score: 668
Period size: 177 Copynumber: 2.4 Consensus size: 176
97503933 TTTAGCCACT
* * *
97503943 AGTCTTATCTTTCTGAAGTTGTAGGAAGCAGACTGAAGAACTACAGATCTTATCTCCATGTATCG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAA-AATTACAGATCTTATCTCCATGTATCG
* * *
97504008 GCTATGGAGCAGATAAAAAATGGCGAGTTTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGC
65 GCTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGC
* *
97504073 CACCACCCTTATCTCTCTGCGGTAGCAAGAGAGCAGGTTGAAGATAAA
130 CACCACCCTTATCTCTCTGAGGTAGCAA-AGAGCAAGTTGAAGATAAA
* *
97504121 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATATTATCTCTATGTATCGG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGG
* * *
97504186 CTATAGAGCAGATCAGAAATGGCGAGTCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCC
66 CTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCC
* * *
97504251 ACCAGCCTTATCTCTGTGAGGTAGCAAAGAGCAAGTTGAAGATACA
131 ACCACCCTTATCTCTCTGAGGTAGCAAAGAGCAAGTTGAAGATAAA
* * *
97504297 AGTCTTATATTCATGAAGTTGCAAGAAGCAGACTGAAAATTTACAGATCTTATCTCCATGTATCG
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATCG
97504362 GCTATGGAGCAGAT
65 GCTATGGAGCAGAT
97504376 TTTAGCCACC
Statistics
Matches: 232, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
176 53 0.23
177 144 0.62
178 35 0.15
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (176 bp):
AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGG
CTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCC
ACCACCCTTATCTCTCTGAGGTAGCAAAGAGCAAGTTGAAGATAAA
Found at i:97504485 original size:133 final size:132
Alignment explanation
Indices: 97504212--97504508 Score: 495
Period size: 133 Copynumber: 2.2 Consensus size: 132
97504202 AAATGGCGAG
* *
97504212 TCTTATCTCCAGGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAACA
* *
97504277 AAGAGCAAGTTGAAGATACAAGTCTTATATTCATGAAGTTGCAAGAAGCAGACTGAAAATTTACA
66 AAGAACAAGTTGAAGATACAAGTCTTATATTCATGAAGTTACAAGAAGCAGACTGAAAATTTACA
97504342 GA
131 GA
* *
97504344 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTTTGAGGTAACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAACA
* * * *
97504409 AGAGAACAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTTAC
66 A-AGAACAAGTTGAAGATACAAGTCTTATATTCATGAAGTTACAAGAAGCAGACTGAAAATTTAC
97504474 AGA
130 AGA
97504477 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
97504509 CGAAAATGGC
Statistics
Matches: 154, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
132 62 0.40
133 92 0.60
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTGTGAGGTAACA
AAGAACAAGTTGAAGATACAAGTCTTATATTCATGAAGTTACAAGAAGCAGACTGAAAATTTACA
GA
Found at i:97504514 original size:46 final size:46
Alignment explanation
Indices: 97504456--97504553 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 46
97504446 AGTTACAGGA
*
97504456 AGCAGA-CTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATGG
1 AGCAGATCTGAAAA-TGACAGATCTTATCTCCATGTATCGGCTATGG
* * *
97504502 AGCAGATC-GAAAATGGCGGGTCTTATCTCCATGTATCGGCTATGG
1 AGCAGATCTGAAAATGACAGATCTTATCTCCATGTATCGGCTATGG
97504547 AGCAGAT
1 AGCAGAT
97504554 TTTAGCCACC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
45 35 0.74
46 11 0.23
47 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (46 bp):
AGCAGATCTGAAAATGACAGATCTTATCTCCATGTATCGGCTATGG
Found at i:97504542 original size:178 final size:178
Alignment explanation
Indices: 97504344--97504686 Score: 573
Period size: 178 Copynumber: 1.9 Consensus size: 178
97504334 AATTTACAGA
* * *
97504344 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTTTGAGGTAACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAACA
* *
97504409 AGAGAACAGGTTGAAGATACA-AGTCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAA-AATTT
66 AGAGAACAGGATAAAGATACAGA-TCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAGAA-TT
97504472 ACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGGG
129 ACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGGG
*
97504522 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAACA
* **
97504587 AGAGAGCAGGATAAAGATACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAATTAC
66 AGAGAACAGGATAAAGATACAGATCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAGAATTAC
97504652 AGATCTTATCTCCATGTATCGGCTATGGAGCAGAT
131 AGATCTTATCTCCATGTATCGGCTATGGAGCAGAT
97504687 TTTAGCCACT
Statistics
Matches: 154, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
178 151 0.98
179 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (178 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAACA
AGAGAACAGGATAAAGATACAGATCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAGAATTAC
AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGGG
Found at i:97504655 original size:45 final size:45
Alignment explanation
Indices: 97504604--97504751 Score: 128
Period size: 45 Copynumber: 3.3 Consensus size: 45
97504594 AGGATAAAGA
97504604 TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
1 TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
* * * ** *
97504649 TACAGATCTTATC-TCCATGTA-TCGGCTATGG-AGCAGATTTTAG--C
1 TACAGATCTTATCTTCC-TGAAGT-TG-TA-GGAAGCAGACTGAAGAAT
* * *
97504693 CACTAG-TCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAAT
1 TAC-AGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
97504738 TACAGATCTTATCT
1 TACAGATCTTATCT
97504752 CCATGTATCG
Statistics
Matches: 76, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
42 2 0.03
43 10 0.13
44 19 0.25
45 32 0.42
46 11 0.14
47 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (45 bp):
TACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAAT
Found at i:97504723 original size:89 final size:89
Alignment explanation
Indices: 97504610--97504784 Score: 332
Period size: 89 Copynumber: 2.0 Consensus size: 89
97504600 AAGATACAGA
*
97504610 TCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
97504675 TATGGAGCAGATTTTAGCCACTAG
66 TATGGAGCAGATTTTAGCCACTAG
*
97504699 TCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
97504764 TATGGAGCAGATTTTAGCCAC
66 TATGGAGCAGATTTTAGCCAC
97504785 CGACCTTATC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (89 bp):
TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGC
TATGGAGCAGATTTTAGCCACTAG
Found at i:97504925 original size:222 final size:221
Alignment explanation
Indices: 97504522--97504928 Score: 579
Period size: 222 Copynumber: 1.8 Consensus size: 221
97504512 AAATGGCGGG
*
97504522 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTAAGGTAGCA
* * * *
97504587 AGAGAGCAGGATAAAGATACAGATCTTATCTTCCTGAAGTTGTAGGAAGCAGACTGAAGAATTAC
66 AGAGAGCAGGATAAAGATACAGATCTCATCTTCCTGAAGTTGCAAGAAGCAAACTGAAGAATTAC
* * ** *
97504652 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCTTGAAGTT
131 AGATCTTATCTCCATATATCGGCTATGGAGCAGA-TTCAGAAACAAGTCTTATCTTCTTGAAGTT
97504717 GCAGGAAGCAGACTGAAGAATTACAGA
195 GCAGGAAGCAGACTGAAGAATTACAGA
*
97504744 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC-GACCTTATCTCTCTAAGGTAGC
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-CCTCATCTCTCTAAGGTAGC
* * * *
97504808 AAGAGAGCAGGTTGAAGATAGTAG-TCTCATCTTCTTGAAGTTGCAAGAAGCAAACTGAA-AATT
65 AAGAGAGCAGGATAAAGATA-CAGATCTCATCTTCCTGAAGTTGCAAGAAGCAAACTGAAGAATT
* *
97504871 ACGGATCTTATCTCCATATATCGGTTATGGAGCAGA-TCAGAAATGGCAAGTCTTATCT
129 ACAGATCTTATCTCCATATATCGGCTATGGAGCAGATTCAGAAA---CAAGTCTTATCT
97504929 CCATGTATCG
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
219 4 0.02
221 38 0.23
222 119 0.73
223 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (221 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTCATCTCTCTAAGGTAGCA
AGAGAGCAGGATAAAGATACAGATCTCATCTTCCTGAAGTTGCAAGAAGCAAACTGAAGAATTAC
AGATCTTATCTCCATATATCGGCTATGGAGCAGATTCAGAAACAAGTCTTATCTTCTTGAAGTTG
CAGGAAGCAGACTGAAGAATTACAGA
Found at i:97504970 original size:133 final size:135
Alignment explanation
Indices: 97504436--97504985 Score: 423
Period size: 133 Copynumber: 4.1 Consensus size: 135
97504426 TACAAGTCTT
* * * *
97504436 ATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTTACAGATCTTATCTCCATGTATCGGCTATG
1 ATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATATATCGGCTATG
* * **
97504501 GAGCAGATCGAAAATGGC-GGGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA-CC
65 GAGCAGATCGAAAATGGCAAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATTG
97504564 AGCCTC
130 AGCCTC
* * *
97504570 ATC-TCTCTGAGGTAGCAAGAGAGCAGGA-T-AAAGA-TACAGATCTTATCTTCC-TGA-AGT-T
1 ATCTTCT-TGAAGTTGCAAGA-AGCA-GACTGAAA-ATTACAGATCTTATC-TCCAT-ATA-TCG
**
97504628 G-TA-GGAAGCAGA-CTGAAGAATTAC-AGATCTTATCTCCATGTATCGGCTATGGAGCAGATTT
59 GCTATGG-AGCAGATC-GAA-AATGGCAAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTT
* * *
97504689 TAGCCACT-AGTCTT
121 TAGCCATTGAGCCTC
* *
97504703 ATCTTCTTGAAGTTGCAGGAAGCAGACTGAAGAATTACAGATCTTATCTCCATGTATCGGCTATG
1 ATCTTCTTGAAGTTGCAAGAAGCAGACTGAA-AATTACAGATCTTATCTCCATATATCGGCTATG
*** * * * * * * **
97504768 GAGCAGAT--TTTA-GCCACCGACCTTATCTCTCTAAGGTA---GC-AAGAGAGCAGGTTGAAG-
65 GAGCAGATCGAAAATGGCA-AGATCTTATCTC-C--ATGTATCGGCTATG-GAGCAGATTTTAGC
* *
97504825 -ATAGTAGTCTC
125 CATTG-AGCCTC
* * *
97504836 ATCTTCTTGAAGTTGCAAGAAGCAAACTGAAAATTACGGATCTTATCTCCATATATCGGTTATGG
1 ATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATATATCGGCTATGG
97504901 AGCAGATC-AGAAATGGCAAG-TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATTG
66 AGCAGATCGA-AAATGGCAAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATTG
97504964 A-CCTC
130 AGCCTC
* *
97504969 ATCTCCCTGAAGTTGCA
1 ATCTTCTTGAAGTTGCA
97504986 GTGGAACAGG
Statistics
Matches: 323, Mismatches: 54, Indels: 79
0.71 0.12 0.17
Matches are distributed among these distances:
130 4 0.01
131 7 0.02
132 58 0.18
133 181 0.56
134 45 0.14
135 20 0.06
136 8 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (135 bp):
ATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATATATCGGCTATGG
AGCAGATCGAAAATGGCAAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATTGA
GCCTC
Found at i:97506582 original size:26 final size:26
Alignment explanation
Indices: 97506552--97506610 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
97506542 AATCAATCTC
97506552 CATTTTCAAAATAAAAATAGTTTCGA
1 CATTTTCAAAATAAAAATAGTTTCGA
97506578 CATTTTCAAAATAAAAATAGTTTCGA
1 CATTTTCAAAATAAAAATAGTTTCGA
97506604 CATTTTC
1 CATTTTC
97506611 TTTTTCCTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (26 bp):
CATTTTCAAAATAAAAATAGTTTCGA
Found at i:97508941 original size:45 final size:45
Alignment explanation
Indices: 97508886--97508972 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
97508876 CAAATTTTAA
* *
97508886 GAATTATTGACATTATTATCCATATAATA-TCATTTTATGTTTCAG
1 GAATTATTGACACTATTATCCACATAATACT-ATTTTATGTTTCAG
* *
97508931 GAATTTTTGACACTATTATCCACGTAATACTATTTTATGTTT
1 GAATTATTGACACTATTATCCACATAATACTATTTTATGTTT
97508973 GCATATCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 36 0.97
46 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (45 bp):
GAATTATTGACACTATTATCCACATAATACTATTTTATGTTTCAG
Found at i:97515491 original size:43 final size:43
Alignment explanation
Indices: 97515426--97515589 Score: 292
Period size: 43 Copynumber: 3.8 Consensus size: 43
97515416 GTTTATTGGA
* *
97515426 AAAAACGCCACTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
97515469 AAAAGCGACGCTAAAGGTCAAGGCTTTTAGCGGCGTTTTTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
97515512 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
97515555 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
97515590 CTTTTTTTGC
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 115 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:97515535 original size:86 final size:86
Alignment explanation
Indices: 97515413--97515595 Score: 312
Period size: 86 Copynumber: 2.1 Consensus size: 86
97515403 AAAAATTTGT
97515413 GGCGTTTATTGGAAAAAACGCCACTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGAC
1 GGCGTTT-TTGGAAAAAACGCCACTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGAC
97515478 GCTAAAGGTCAAGGCTTTTAGC
65 GCTAAAGGTCAAGGCTTTTAGC
* * * *
97515500 GGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCG
1 GGCGTTTTTGGAAAAAACGCCACTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGACG
97515565 CTAAAGGTCAAGGCTTTTAGC
66 CTAAAGGTCAAGGCTTTTAGC
97515586 GGCGCTTTTT
1 GGCG-TTTTT
97515596 TTGCAAGCAC
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
86 79 0.87
87 12 0.13
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.26
Consensus pattern (86 bp):
GGCGTTTTTGGAAAAAACGCCACTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGACG
CTAAAGGTCAAGGCTTTTAGC
Found at i:97521482 original size:9 final size:9
Alignment explanation
Indices: 97521468--97521618 Score: 169
Period size: 9 Copynumber: 16.9 Consensus size: 9
97521458 TGACAACATA
97521468 TAAGTTATG
1 TAAGTTATG
*
97521477 TAAGTTATA
1 TAAGTTATG
97521486 TAAGTTATG
1 TAAGTTATG
97521495 TAAGTTATG
1 TAAGTTATG
97521504 TAAGTTATG
1 TAAGTTATG
**
97521513 TAAGTTACA
1 TAAGTTATG
*
97521522 TAACTTATG
1 TAAGTTATG
97521531 TAAGTTATG
1 TAAGTTATG
* *
97521540 TATGTTATA
1 TAAGTTATG
*
97521549 TGAGTTATG
1 TAAGTTATG
*
97521558 TAAGTTATA
1 TAAGTTATG
*
97521567 TAAGTTATA
1 TAAGTTATG
* *
97521576 T-ATTTATC
1 TAAGTTATG
*
97521584 TAAGTTATA
1 TAAGTTATG
97521593 TAAGTTATG
1 TAAGTTATG
* *
97521602 TACGTTTTG
1 TAAGTTATG
97521611 TAAGTTAT
1 TAAGTTAT
97521619 ATAAATTATA
Statistics
Matches: 117, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
8 6 0.05
9 111 0.95
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:97521499 original size:27 final size:27
Alignment explanation
Indices: 97521469--97521628 Score: 196
Period size: 27 Copynumber: 6.0 Consensus size: 27
97521459 GACAACATAT
*
97521469 AAGTTATGTAAGTTATATAAGTTATGT
1 AAGTTATGTAAGTTATATAAGTTATAT
* *
97521496 AAGTTATGTAAGTTATGTAAGTTACAT
1 AAGTTATGTAAGTTATATAAGTTATAT
* * *
97521523 AACTTATGTAAGTTATGTATGTTATAT
1 AAGTTATGTAAGTTATATAAGTTATAT
*
97521550 GAGTTATGTAAGTTATATAAGTTATAT
1 AAGTTATGTAAGTTATATAAGTTATAT
* * *
97521577 -ATTTATCTAAGTTATATAAGTTATGT
1 AAGTTATGTAAGTTATATAAGTTATAT
* * *
97521603 ACGTTTTGTAAGTTATATAAATTATA
1 AAGTTATGTAAGTTATATAAGTTATA
97521629 ATATCAAATA
Statistics
Matches: 113, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 23 0.20
27 90 0.80
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.46
Consensus pattern (27 bp):
AAGTTATGTAAGTTATATAAGTTATAT
Found at i:97521753 original size:15 final size:15
Alignment explanation
Indices: 97521733--97521788 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
97521723 AAGTAGCGGG
97521733 ATTAAATAATATTTA
1 ATTAAATAATATTTA
97521748 ATTAAATAATATTT-
1 ATTAAATAATATTTA
97521762 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
97521777 ATTAAGTAATAT
1 ATTAAATAATAT
97521789 ACATGTCATT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:97524524 original size:62 final size:61
Alignment explanation
Indices: 97524366--97524546 Score: 344
Period size: 61 Copynumber: 3.0 Consensus size: 61
97524356 ACAAACTAGT
*
97524366 TTTTCCATTTCAGAACAAAAAATCCAAACAATAGACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
97524427 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
97524488 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
1 TTTTCCATTTCAGAACAAAAA-ATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
97524547 CAAATTTTGG
Statistics
Matches: 118, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
61 81 0.69
62 37 0.31
ACGTcount: A:0.55, C:0.18, G:0.08, T:0.19
Consensus pattern (61 bp):
TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
Found at i:97526911 original size:26 final size:25
Alignment explanation
Indices: 97526882--97526931 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
97526872 GAATTAATCA
97526882 TAAACCTTCAAATAC-TAGTTAACTCC
1 TAAACCTT-AAA-ACATAGTTAACTCC
*
97526908 TAAACCTTAAACCATAGTTAACTC
1 TAAACCTTAAAACATAGTTAACTC
97526932 ATAATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.59
26 8 0.36
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAACCTTAAAACATAGTTAACTCC
Found at i:97526966 original size:14 final size:14
Alignment explanation
Indices: 97526949--97526988 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
97526939 ATTAAACATG
* *
97526949 CTTAAACCATATAT
1 CTTAAACCATAAAC
97526963 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
97526977 CTTAAACTATAA
1 CTTAAACCATAA
97526989 TGATAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:97527201 original size:41 final size:41
Alignment explanation
Indices: 97527144--97527322 Score: 254
Period size: 41 Copynumber: 4.4 Consensus size: 41
97527134 GGTTATGAGA
97527144 TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTGG
* * *
97527185 TTTTTTGCGGCATTTTAGGAAAAGCG-ACGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCA-GCTAATGCTCTGG
* *
97527226 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTAG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTGG
* * *
97527267 TTTTTTGCGGCGTTTTAGGAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTGG
*
97527308 -TTTTAGCGGCATTTT
1 TTTTTAGCGGCGTTTT
97527323 TTTAGAACGC
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
40 14 0.11
41 109 0.89
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTGG
Found at i:97527238 original size:82 final size:82
Alignment explanation
Indices: 97527144--97527322 Score: 306
Period size: 82 Copynumber: 2.2 Consensus size: 82
97527134 GGTTATGAGA
*
97527144 TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTGGTTTTTTGCGGCATTTTAGGAAAAG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTAGTTTTTTGCGGCATTTTAGGAAAAG
97527209 CGACGCTAATGCTCTGG
66 CGACGCTAATGCTCTGG
* *
97527226 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTAGTTTTTTGCGGCGTTTTAGGAAAAG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTAGTTTTTTGCGGCATTTTAGGAAAAG
*
97527291 CGCCGCTAATGCTCTGG
66 CGACGCTAATGCTCTGG
*
97527308 -TTTTAGCGGCATTTT
1 TTTTTAGCGGCGTTTT
97527323 TTTAGAACGC
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
81 14 0.15
82 78 0.85
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (82 bp):
TTTTTAGCGGCGTTTTACGAAAAGCGCAGCTAATGCTCTAGTTTTTTGCGGCATTTTAGGAAAAG
CGACGCTAATGCTCTGG
Found at i:97530130 original size:25 final size:25
Alignment explanation
Indices: 97530075--97530141 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
97530065 GCAACCAACT
* * *
97530075 ACAAAACGCCCCGTTT-ATTAAAAG
1 ACAAAACGCACCATTTAACTAAAAG
** *
97530099 ATTAAACTCACCATTTAACTAAAAG
1 ACAAAACGCACCATTTAACTAAAAG
97530124 ACAAAACGCACCATTTAA
1 ACAAAACGCACCATTTAA
97530142 ACAACCTATT
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
24 11 0.33
25 22 0.67
ACGTcount: A:0.46, C:0.24, G:0.07, T:0.22
Consensus pattern (25 bp):
ACAAAACGCACCATTTAACTAAAAG
Found at i:97535668 original size:22 final size:22
Alignment explanation
Indices: 97535641--97535683 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
97535631 TCCCACCATT
97535641 AGGGACAGCTTCCCAACAGTTC
1 AGGGACAGCTTCCCAACAGTTC
97535663 AGGGACAGCTTCCCAACAGTT
1 AGGGACAGCTTCCCAACAGTT
97535684 ATTGAGAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.19
Consensus pattern (22 bp):
AGGGACAGCTTCCCAACAGTTC
Found at i:97541597 original size:16 final size:16
Alignment explanation
Indices: 97541578--97541620 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
97541568 CTTTAGCCAT
97541578 ATTTACTTTTAGTGTA
1 ATTTACTTTTAGTGTA
* *
97541594 ATTTATTTTTAGTTTA
1 ATTTACTTTTAGTGTA
97541610 ATTTCACTTTT
1 ATTT-ACTTTT
97541621 CTAATTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.63
Consensus pattern (16 bp):
ATTTACTTTTAGTGTA
Found at i:97554152 original size:47 final size:43
Alignment explanation
Indices: 97554076--97554208 Score: 140
Period size: 47 Copynumber: 2.9 Consensus size: 43
97554066 GTAACCCGTC
*
97554076 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA
1 CATAACTGAACTCGGACTCAACTCAACGAGCTCGGATGCC-A--TA
** * * *
97554122 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
1 CATAACT-GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CATA
*
97554169 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
1 CATAACTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
97554209 CAAATATCCT
Statistics
Matches: 72, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.04
46 31 0.43
47 32 0.44
49 4 0.06
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (43 bp):
CATAACTGAACTCGGACTCAACTCAACGAGCTCGGATGCCATA
Found at i:97554197 original size:46 final size:46
Alignment explanation
Indices: 97554073--97554208 Score: 154
Period size: 46 Copynumber: 3.0 Consensus size: 46
97554063 CATGTAACCC
97554073 GTCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGCCTA
1 GTCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATGCCTA
* *** * *
97554118 GTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A
1 G-TCCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGA-ATGC-CTA
97554167 -TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGCC
1 GTCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATGCC
97554209 CAAATATCCT
Statistics
Matches: 74, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.04
45 1 0.01
46 32 0.43
47 32 0.43
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
GTCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATGCCTA
Found at i:97554223 original size:46 final size:44
Alignment explanation
Indices: 97554080--97554223 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
97554070 CCCGTCCATA
*
97554080 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA---A-ATC-CT
* * * *
97554129 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCAAATCC-T
97554172 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCC-AA-ATCCT
97554219 AGTGA
1 AGTGA
97554224 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.42
47 28 0.37
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATCCT
Found at i:97556767 original size:30 final size:30
Alignment explanation
Indices: 97556723--97556791 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
97556713 CAAAGATAAC
*
97556723 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* * *
97556752 GAGAAACCCAGAATAAAGAGATCCAGGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
97556782 AAGAAACCCA
1 AAGAAACCCA
97556792 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:97556796 original size:15 final size:15
Alignment explanation
Indices: 97556734--97556796 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
97556724 AGAAAACCGA
*
97556734 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
97556749 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
97556763 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
97556779 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
97556794 ATA
1 ATA
97556797 CGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:97559798 original size:46 final size:45
Alignment explanation
Indices: 97559731--97559905 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
97559721 TGTAACCCGC
*
97559731 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
97559777 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * * *
97559823 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
97559870 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
97559906 ATGCCCAAAT
Statistics
Matches: 100, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.66
47 31 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:97559846 original size:93 final size:93
Alignment explanation
Indices: 97559738--97559910 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
97559728 CGCCCATAAG
* * * *
97559738 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
97559803 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
97559831 CGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97559896 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
97559911 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:97575025 original size:47 final size:47
Alignment explanation
Indices: 97574971--97575138 Score: 264
Period size: 47 Copynumber: 3.6 Consensus size: 47
97574961 TATTTGAATA
97574971 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
97575018 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
97575065 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
97575112 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
97575139 TCCCGAAGGG
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:97584632 original size:30 final size:30
Alignment explanation
Indices: 97584596--97584700 Score: 156
Period size: 30 Copynumber: 3.5 Consensus size: 30
97584586 CATGACTATC
97584596 ACACACGGGCATGTGGTCTACCCGTATGTT
1 ACACACGGGCATGTGGTCTACCCGTATGTT
* * *
97584626 ACACACGGGCGTGTAGTCTTCCCGTATGTT
1 ACACACGGGCATGTGGTCTACCCGTATGTT
* *
97584656 ACACACGGGCATGTGGTCTACCCGTGTGTC
1 ACACACGGGCATGTGGTCTACCCGTATGTT
*
97584686 ACACACGAGCATGTG
1 ACACACGGGCATGTG
97584701 AATCACTCGT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.25
Consensus pattern (30 bp):
ACACACGGGCATGTGGTCTACCCGTATGTT
Found at i:97590926 original size:48 final size:47
Alignment explanation
Indices: 97590705--97590949 Score: 228
Period size: 43 Copynumber: 5.4 Consensus size: 47
97590695 TATATTGTAC
* *
97590705 ATTGGCACTAAGTGTGGGAGACTGAGATAGCTTCGGCTA-A-AT-AT
1 ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATAAT
* ** * *
97590749 ATTGGCAGTAAGTGTGCGAGA-CCAAATAGCTTCGGCTA-A-AT-AC
1 ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATAAT
* * * *
97590792 ATTGGCACTAAGTGTGCGAGA-TCAGATAACTTCGGTTATATACATAT
1 ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATA-AT
* * *
97590839 ATTGGCACTTAGTGTGC-ATGATTGAGATAGCTCCAGCTATATATACAT
1 ATTGGCACTAAGTGTGCGA-GATTGAGATAGCTTCGGCTATATATA-AT
* *
97590887 ATTGGCACTTAGTGTGCGAGATTGATATAGCTTCGGCTAT-T-T-AT
1 ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATAAT
97590931 -TTGGCACTAAGTGTGCGAG
1 ATTGGCACTAAGTGTGCGAG
97590950 TTTCTAGGTA
Statistics
Matches: 169, Mismatches: 25, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
43 69 0.41
44 22 0.13
45 1 0.01
46 2 0.01
47 20 0.12
48 54 0.32
49 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (47 bp):
ATTGGCACTAAGTGTGCGAGATTGAGATAGCTTCGGCTATATATAAT
Found at i:97592719 original size:35 final size:35
Alignment explanation
Indices: 97592592--97592722 Score: 129
Period size: 35 Copynumber: 3.6 Consensus size: 35
97592582 CCTCATTGAA
* * * *
97592592 ATACCATACCTGCATTTTACAACTCGGTATGGGA-A
1 ATACCATACCTACATTTCACAACTCAGTAT-GGATG
* **
97592627 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
*
97592664 ATAATACCATACTTACATTTCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
97592702 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
97592723 CTTTTCCATG
Statistics
Matches: 78, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
34 3 0.04
35 44 0.56
38 2 0.03
40 29 0.37
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Done.