Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 297 of 316
Found at i:97918178 original size:15 final size:15
Alignment explanation
Indices: 97918136--97918243 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
97918126 CCAATATCTC
*
97918136 GATACCCATATCTTT
1 GATACCCATATATTT
**
97918151 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
97918166 GATACCCATATATTT
1 GATACCCATATATTT
**
97918181 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
97918196 GATACCCATATCTTT
1 GATACCCATATATTT
** *
97918211 GACTTTCTAT-TATTT
1 GA-TACCCATATATTT
*
97918226 GATACCCATATCTTT
1 GATACCCATATATTT
97918241 GAT
1 GAT
97918244 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 12 0.17
15 45 0.65
16 12 0.17
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:97922863 original size:30 final size:30
Alignment explanation
Indices: 97922819--97922939 Score: 165
Period size: 30 Copynumber: 4.0 Consensus size: 30
97922809 TTTATTATGC
*
97922819 CAATATCTCGATACCCATATCTTTGACTTTT
1 CAATAT-TTGATACCCATATCTTTGACTTTT
* *
97922850 CAATATTTGATACCCATATATTTGACTTTC
1 CAATATTTGATACCCATATCTTTGACTTTT
97922880 CAATATTTGATACCCATATCTTTGAC-TTT
1 CAATATTTGATACCCATATCTTTGACTTTT
* *
97922909 CTATTATTTGATACCAATATCTTTGA-TTTT
1 C-AATATTTGATACCCATATCTTTGACTTTT
97922939 C
1 C
97922940 CATAAATATG
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
29 3 0.04
30 72 0.89
31 6 0.07
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.45
Consensus pattern (30 bp):
CAATATTTGATACCCATATCTTTGACTTTT
Found at i:97922870 original size:15 final size:15
Alignment explanation
Indices: 97922852--97922935 Score: 64
Period size: 15 Copynumber: 5.6 Consensus size: 15
97922842 TGACTTTTCA
97922852 ATATTTGATACCCAT
1 ATATTTGATACCCAT
**
97922867 ATATTTGACTTTCCA-
1 ATATTTGA-TACCCAT
97922882 ATATTTGATACCCAT
1 ATATTTGATACCCAT
* ** *
97922897 ATCTTTGACTTTCTAT
1 ATATTTGA-TACCCAT
*
97922913 -TATTTGATACCAAT
1 ATATTTGATACCCAT
*
97922927 ATCTTTGAT
1 ATATTTGAT
97922936 TTTCCATAAA
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
14 8 0.15
15 36 0.69
16 8 0.15
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.46
Consensus pattern (15 bp):
ATATTTGATACCCAT
Found at i:97927517 original size:31 final size:32
Alignment explanation
Indices: 97927479--97927549 Score: 108
Period size: 31 Copynumber: 2.2 Consensus size: 32
97927469 CTTCCTGCAT
97927479 AAAAACAGCAAATATAACAT-AAAATACAACC
1 AAAAACAGCAAATATAACATAAAAATACAACC
* *
97927510 AAAAACAGCAAATTTAGCATAAAAAATACAACC
1 AAAAACAGCAAATATAACAT-AAAAATACAACC
97927543 AAAAACA
1 AAAAACA
97927550 TTAATTCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 18 0.50
33 18 0.50
ACGTcount: A:0.65, C:0.18, G:0.04, T:0.13
Consensus pattern (32 bp):
AAAAACAGCAAATATAACATAAAAATACAACC
Found at i:97927796 original size:21 final size:20
Alignment explanation
Indices: 97927767--97927832 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 20
97927757 ACTTTCTACT
97927767 CTGCTCTG-CTGCCATCGCTG
1 CTGCTCTGCCT-CCATCGCTG
*
97927787 CTGCTTCTGCCTCCCTCGCTG
1 CTGC-TCTGCCTCCATCGCTG
* * * *
97927808 CTACCGCTGCCTCCCTCTCTG
1 CT-GCTCTGCCTCCATCGCTG
97927829 CTGC
1 CTGC
97927833 CTCCGCTCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 5 0.13
21 30 0.79
22 3 0.08
ACGTcount: A:0.03, C:0.47, G:0.20, T:0.30
Consensus pattern (20 bp):
CTGCTCTGCCTCCATCGCTG
Found at i:97928271 original size:13 final size:14
Alignment explanation
Indices: 97928245--97928273 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
97928235 ACTAATGACG
97928245 AATTAAACCATTAT
1 AATTAAACCATTAT
97928259 AATTAAA-CATTAT
1 AATTAAACCATTAT
97928272 AA
1 AA
97928274 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:97929309 original size:25 final size:25
Alignment explanation
Indices: 97929276--97929323 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
97929266 GTAAAATATC
* *
97929276 GAATTAGTAGAATCGAACTATTATG
1 GAATAAGTAGAATCAAACTATTATG
* *
97929301 GAATAAGTATAATCAAATTATTA
1 GAATAAGTAGAATCAAACTATTA
97929324 CAACACAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (25 bp):
GAATAAGTAGAATCAAACTATTATG
Found at i:97931858 original size:40 final size:40
Alignment explanation
Indices: 97931765--97931875 Score: 107
Period size: 40 Copynumber: 2.8 Consensus size: 40
97931755 CAATTAAACA
** *
97931765 TTTAGTGGCG-TTTTACAAAAGCATCGCTAAATCTCAATC
1 TTTAGTGGCGTTTTTACAAAAGCGCCGCTAATTCTCAATC
* * ** *
97931804 TTTTGCGGTATTTTTACAAAAGCGCCGCTAATTCTCTATC
1 TTTAGTGGCGTTTTTACAAAAGCGCCGCTAATTCTCAATC
* * **
97931844 TTTAGTAGCGTTTTTAGAAAAATGCCGCTAAT
1 TTTAGTGGCGTTTTTACAAAAGCGCCGCTAAT
97931876 GCCTCTGGAG
Statistics
Matches: 55, Mismatches: 16, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
39 6 0.11
40 49 0.89
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (40 bp):
TTTAGTGGCGTTTTTACAAAAGCGCCGCTAATTCTCAATC
Found at i:97933014 original size:36 final size:37
Alignment explanation
Indices: 97932972--97933051 Score: 126
Period size: 38 Copynumber: 2.2 Consensus size: 37
97932962 CCCGGCCCAT
97932972 ACCATAAACTT-AACATACTATACCATTGAACCCTAA
1 ACCATAAACTTAAACATACTATACCATTGAACCCTAA
* *
97933008 ACCATAAACTTAAAATATATTATACCATTGAACCCTAA
1 ACCATAAACTT-AAACATACTATACCATTGAACCCTAA
97933046 ACCATA
1 ACCATA
97933052 CGCCTTAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
36 11 0.28
38 29 0.73
ACGTcount: A:0.46, C:0.25, G:0.03, T:0.26
Consensus pattern (37 bp):
ACCATAAACTTAAACATACTATACCATTGAACCCTAA
Found at i:97933895 original size:25 final size:25
Alignment explanation
Indices: 97933854--97933901 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
97933844 AAGGTTTATG
97933854 GGTTTAGGGATTATGGTTTAAGGGT
1 GGTTTAGGGATTATGGTTTAAGGGT
*
97933879 GGTTTAAGGG-TTGTGGTTTAAGG
1 GGTTT-AGGGATTATGGTTTAAGG
97933902 TTTAAGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.40
Consensus pattern (25 bp):
GGTTTAGGGATTATGGTTTAAGGGT
Found at i:97933903 original size:21 final size:22
Alignment explanation
Indices: 97933879--97933941 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
97933869 GTTTAAGGGT
*
97933879 GGTTTAAGGGTT-GTGGTTTAA
1 GGTTTAAGGGTTAGGGGTTTAA
*
97933900 GGTTTAAGTGTTAGGGGTTT-A
1 GGTTTAAGGGTTAGGGGTTTAA
* *
97933921 GGGTTAGGGGTTCA-GGGTTTA
1 GGTTTAAGGGTT-AGGGGTTTA
97933942 GATTAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
21 27 0.79
22 7 0.21
ACGTcount: A:0.17, C:0.02, G:0.41, T:0.40
Consensus pattern (22 bp):
GGTTTAAGGGTTAGGGGTTTAA
Found at i:97933928 original size:14 final size:14
Alignment explanation
Indices: 97933909--97933939 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
97933899 AGGTTTAAGT
*
97933909 GTTAGGGGTTTAGG
1 GTTAGGGGTTCAGG
97933923 GTTAGGGGTTCAGG
1 GTTAGGGGTTCAGG
97933937 GTT
1 GTT
97933940 TAGATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.03, G:0.48, T:0.35
Consensus pattern (14 bp):
GTTAGGGGTTCAGG
Found at i:97934098 original size:22 final size:21
Alignment explanation
Indices: 97934073--97934122 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
97934063 GAGTTACTAT
*
97934073 TTTAAGGTTTATGAATTATGAG
1 TTTAAGGATTATGAATTATG-G
* *
97934095 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGAATTATGG
97934116 TTTAAGG
1 TTTAAGG
97934123 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGAATTATGG
Found at i:97934131 original size:14 final size:15
Alignment explanation
Indices: 97934114--97934146 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
97934104 TATGATTTAT
*
97934114 GGTTTAAGGGTT-GG
1 GGTTTAAGGCTTAGG
97934128 GGTTTAAGGCTTAGG
1 GGTTTAAGGCTTAGG
97934143 GGTT
1 GGTT
97934147 AGGGGTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.03, G:0.45, T:0.36
Consensus pattern (15 bp):
GGTTTAAGGCTTAGG
Found at i:97934968 original size:37 final size:37
Alignment explanation
Indices: 97934927--97935004 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
97934917 ATGGGTATCC
*
97934927 TCAAAACACCCCCAATCTCACCCCTCCGTTGCTCTTT
1 TCAAAACACCCCCAATCTCACCCCTCCATTGCTCTTT
*
97934964 TCAAAACACCCCCAATCTCATCCCTCCATTGCTCTTT
1 TCAAAACACCCCCAATCTCACCCCTCCATTGCTCTTT
97935001 TCAA
1 TCAA
97935005 TCAAGAAACT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.44, G:0.04, T:0.28
Consensus pattern (37 bp):
TCAAAACACCCCCAATCTCACCCCTCCATTGCTCTTT
Found at i:97937454 original size:18 final size:18
Alignment explanation
Indices: 97937431--97937467 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
97937421 TCTGATTTTA
97937431 ACATTCGTGAATTCCATG
1 ACATTCGTGAATTCCATG
97937449 ACATTCGTGAATTCCATG
1 ACATTCGTGAATTCCATG
97937467 A
1 A
97937468 ATTAAGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (18 bp):
ACATTCGTGAATTCCATG
Found at i:97939694 original size:21 final size:18
Alignment explanation
Indices: 97939651--97939719 Score: 63
Period size: 18 Copynumber: 3.8 Consensus size: 18
97939641 AAATGATAAT
97939651 AATAT-ATAG-ATAAAAA
1 AATATAATAGTATAAAAA
97939667 AATATAATAGTATAAAAA
1 AATATAATAGTATAAAAA
*
97939685 AATGGCATAATAATATAAAATA
1 AAT---ATAATAGTATAAAA-A
*
97939707 ATTATAATA-TATA
1 AATATAATAGTATA
97939720 TAATAGGAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
16 5 0.11
17 4 0.09
18 14 0.31
19 6 0.13
21 13 0.29
22 3 0.07
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.30
Consensus pattern (18 bp):
AATATAATAGTATAAAAA
Found at i:97939720 original size:20 final size:20
Alignment explanation
Indices: 97939691--97939908 Score: 77
Period size: 20 Copynumber: 10.9 Consensus size: 20
97939681 AAAAAATGGC
97939691 ATAATA-ATATAAAATAATT
1 ATAATATATATAAAATAATT
** *
97939710 ATAATATATATAATAGGAA-A
1 ATAATATATATAA-AATAATT
* *
97939730 ATACATATGTA-AAAATAATAC
1 ATA-ATATATATAAAATAAT-T
97939751 ATAATATATAT-AAATAATT
1 ATAATATATATAAAATAATT
* * *
97939770 AATAA-ATATATAACACAAGT
1 -ATAATATATATAAAATAATT
97939790 A-AA-A-ATATAATAATAATAT
1 ATAATATATATAA-AATAAT-T
* *
97939809 ATAAATAATGATGTAAAATAATA
1 AT-AAT-AT-ATATAAAATAATT
* *
97939832 ATAATTTGTGA-AAAATAATAT
1 ATAATATAT-ATAAAATAAT-T
*
97939853 ATAATA-A-ATAATAATAA-C
1 ATAATATATATAA-AATAATT
*
97939871 ATAAATAATATATAAAGTAATT
1 AT-AAT-ATATATAAAATAATT
*
97939893 AT-ATA-ATATAATATAA
1 ATAATATATATAAAATAA
97939909 AAATAAGGTT
Statistics
Matches: 146, Mismatches: 28, Indels: 51
0.65 0.12 0.23
Matches are distributed among these distances:
17 6 0.04
18 18 0.12
19 24 0.16
20 50 0.34
21 25 0.17
22 9 0.06
23 3 0.02
24 6 0.04
25 5 0.03
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (20 bp):
ATAATATATATAAAATAATT
Found at i:97939914 original size:29 final size:26
Alignment explanation
Indices: 97939846--97939914 Score: 61
Period size: 29 Copynumber: 2.6 Consensus size: 26
97939836 TTTGTGAAAA
*
97939846 ATAATAT-ATAATAAATAATAATAAC
1 ATAATATAAAAATAAATAATAATAAC
* *
97939871 ATAA-ATAATATATAAAGTAATTATATAAT
1 ATAATATAA-AAATAAA-TAA-TA-ATAAC
97939900 ATAATATAAAAATAA
1 ATAATATAAAAATAA
97939915 GGTTAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
24 2 0.06
25 5 0.15
26 5 0.15
27 3 0.09
28 2 0.06
29 13 0.38
30 4 0.12
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (26 bp):
ATAATATAAAAATAAATAATAATAAC
Found at i:97941936 original size:205 final size:205
Alignment explanation
Indices: 97941583--97942165 Score: 941
Period size: 205 Copynumber: 2.8 Consensus size: 205
97941573 AAATCTGCTT
* * * *
97941583 CTTCGATTTGTTCTCTAACAATACAAAGATGCCAAATCATCTTAGATTTGCTCCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * *
97941648 GCGAAAACCAAATCAGCTATGTCTTTGATTTGCTCCTTTTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATGCCAAACCATCTT
*
97941713 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTAG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCATCGAAGTAG
97941778 AGATGCCAGA
196 AGATGCCAGA
* *
97941788 TTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* *
97941853 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCATTATAAGCACAAGGATGCCAAACCATATT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATGCCAAACCATCTT
* *
97941918 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTACTATGTGTCTGCCCTCCATCGAAGTGG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCATCGAAGTAG
*
97941983 AGATGCTAGA
196 AGATGCCAGA
* * * *
97941993 CTTCAATTTGTTCTCTGACAATACAGAGATGTCAAATCATCTTAGATTTGCTTCAATGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* *
97942058 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATGCCAAACCATCTT
* * *
97942123 GGATCTACTTCAGTATAAACATCTGAAGGCTAGATTTGCTATG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATG
97942166 CTGCAGCCTA
Statistics
Matches: 348, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
205 348 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCATCGAAGTAG
AGATGCCAGA
Found at i:97948543 original size:19 final size:19
Alignment explanation
Indices: 97948520--97948566 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
97948510 ATTTAATCTA
*
97948520 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
97948538 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
97948558 ATTTTTATT
1 ATTTTTATT
97948567 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:97950506 original size:27 final size:26
Alignment explanation
Indices: 97950476--97950652 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 26
97950466 AAATTGTACA
* *
97950476 GCACTAAGTATGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
97950503 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
97950530 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
*
97950557 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* * *
97950585 GCACTAAGTGTGCAATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
97950612 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
97950639 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
97950653 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:97950590 original size:82 final size:81
Alignment explanation
Indices: 97950476--97950631 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 81
97950466 AAATTGTACA
* * *
97950476 GCACTAAGTATGCGATTCGACTATGTTGCACTAAGTGTGCGAA-ATGAATATGAT-GCACTAAGT
1 GCACTAAGTATGCGAGTCGACTATGTAGCACTAAGTGTGC-AATATGAATACG-TGGCACTAAGT
97950539 GTGCGAATTGACCATGCG
64 GTGCGAATTGACCATGCG
* * *
97950557 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCAATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTATGCGAGTC-GACTATGTAGCACTAAGTGTGCAATATGAATACGTGGCACTAAGTG
*
97950622 TGCGAGTTGA
65 TGCGAATTGA
97950632 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
81 19 0.29
82 46 0.71
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTATGCGAGTCGACTATGTAGCACTAAGTGTGCAATATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97950643 original size:82 final size:81
Alignment explanation
Indices: 97950472--97950652 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
97950462 GATTAAATTG
* * * *
97950472 TACAGCACTAAGTATGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
97950537 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
97950553 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGC-AATTTGATTACG-TGGCAC
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAA-ATGAATACGAT-GCAC
* **
97950616 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
97950635 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97950653 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97952135 original size:43 final size:43
Alignment explanation
Indices: 97952065--97952172 Score: 157
Period size: 43 Copynumber: 2.6 Consensus size: 43
97952055 AATAATTTTT
* *
97952065 TAAAGGTTAT-TTTTTTAGC-GCGTTTGTGGTAAAAGCGCCGC
1 TAAAGGTTATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
97952106 TAAAGGTTATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTTATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* **
97952149 TAAAGGTCATGACCTTTAGCGGCG
1 TAAAGGTTATGATTTTTAGCGGCG
97952173 CTTTTCCCAC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 10 0.17
42 8 0.13
43 42 0.70
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (43 bp):
TAAAGGTTATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:97952190 original size:43 final size:43
Alignment explanation
Indices: 97952078--97952191 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 43
97952068 AGGTTATTTT
*** * **
97952078 TTTAGC-GCGTTTGTGGTAAAAGCGCCGCTAAAGGTTATGATT
1 TTTAGCGGCGTTTGTCCCAAAAGCGCCGCTAAAGGTCATGACC
***
97952120 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACC
1 TTTAGCGGCGTTTGTCCCAAAAGCGCCGCTAAAGGTCATGACC
97952163 TTTAGCGGCGCTTT-TCCCACAAA-CGCCGC
1 TTTAGCGGCG-TTTGTCCCA-AAAGCGCCGC
97952192 AAATTTTAGC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 6 0.10
43 50 0.81
44 6 0.10
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTCCCAAAAGCGCCGCTAAAGGTCATGACC
Found at i:97952431 original size:21 final size:21
Alignment explanation
Indices: 97952407--97952457 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 21
97952397 AGTTTATGGA
* *
97952407 TTAGTGTTTATGGTTTATGTT
1 TTAGTGTTTAGGGTTTATGGT
**
97952428 TTAGAATTTAGGGTTTA-GGT
1 TTAGTGTTTAGGGTTTATGGT
*
97952448 TTAATGTTTA
1 TTAGTGTTTA
97952458 AGACTTAAGG
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.55
Consensus pattern (21 bp):
TTAGTGTTTAGGGTTTATGGT
Found at i:97952468 original size:28 final size:28
Alignment explanation
Indices: 97952412--97952472 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
97952402 ATGGATTAGT
* *
97952412 GTTTATGGTTTATGTTTTAGAATTTAGG
1 GTTTATGGTTTATGTTTAAGAATTAAGG
*
97952440 GTTTA-GGTTTAATGTTTAAGACTTAAGG
1 GTTTATGGTTT-ATGTTTAAGAATTAAGG
97952468 GTTTA
1 GTTTA
97952473 CAGAAAGCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.49
Consensus pattern (28 bp):
GTTTATGGTTTATGTTTAAGAATTAAGG
Found at i:97953014 original size:41 final size:40
Alignment explanation
Indices: 97952761--97953011 Score: 286
Period size: 41 Copynumber: 6.2 Consensus size: 40
97952751 AACTTTTTGC
* *
97952761 GGCGTTTGGACCAAAAACGCCGCTGTTGCTCAGTTTTTAGT
1 GGCGTTTGG-CCAAAAACGCCGCTATTGATCAGTTTTTAGT
* ** * * *
97952802 GGTGTTTTACATAAAAACACTGCTATTGATCAGTTTTTAGT
1 GGCGTTTGGC-CAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
97952843 GGCGTTTGGGCCAAAAATGCCGTTATTGATTAGTTTTTAGT
1 GGCGTTT-GGCCAAAAACGCCGCTATTGATCAGTTTTTAGT
* *
97952884 GGCGTTTGGGCCAAAAATGCCGCTATTGATAAGTTTTTAGT
1 GGCGTTT-GGCCAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
97952925 GGCGTTTGGCCGAAAACGCTGCTATTGATCAATTTTTAGT
1 GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * *
97952965 GGCGTTTTGCCAAAAACGCCGCTATTGTTCAGTTTTTTGC
1 GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGT
97953005 GGCGTTT
1 GGCGTTT
97953012 TTGTAAAATA
Statistics
Matches: 177, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
40 69 0.39
41 107 0.60
42 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.37
Consensus pattern (40 bp):
GGCGTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGT
Found at i:97956463 original size:3 final size:3
Alignment explanation
Indices: 97956455--97956504 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
97956445 CCAACCGCAA
97956455 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
97956503 AA
1 AA
97956505 TTTATAAGAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:97968344 original size:30 final size:30
Alignment explanation
Indices: 97968258--97968344 Score: 86
Period size: 33 Copynumber: 2.8 Consensus size: 30
97968248 AAATCGCTAC
* *
97968258 ACCAACCACTA-CACCTACTCAACCTGAATT
1 ACCAACCACCACCACC-ACTCAACCTGAATA
* *
97968288 ACCAACCCTGCCCACCTCCACTCAACCTGAATA
1 ACCAA-CC--ACCACCACCACTCAACCTGAATA
*
97968321 ACCAACCACCACCACCACACAACC
1 ACCAACCACCACCACCACTCAACC
97968345 ACCTTTACCC
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
30 19 0.41
31 2 0.04
32 2 0.04
33 20 0.43
34 3 0.07
ACGTcount: A:0.36, C:0.48, G:0.03, T:0.13
Consensus pattern (30 bp):
ACCAACCACCACCACCACTCAACCTGAATA
Found at i:97991221 original size:111 final size:111
Alignment explanation
Indices: 97991053--97991329 Score: 410
Period size: 111 Copynumber: 2.5 Consensus size: 111
97991043 AGCATTTTGC
* * * * *
97991053 GTGTTATCAGTTGGATTAGATCTTATGAGCATTTGGTGTGTTATTGGTTGGATTAGCTCTTATGA
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGAGTGTTTTTGGTTGGATTAGCTCTGATGA
** *
97991118 GCATTTGGCATGTTTTCGATTGGATCAGCTCTTATGAACATTTGGT
66 GCATTTGGCATGTTAGCGATTGGATCAGCTCTTATGAACATGTGGT
*
97991164 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGAATGTTTTTGGTTGGATTAGCTCTGATGA
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGAGTGTTTTTGGTTGGATTAGCTCTGATGA
* * * * *
97991229 GCATTTGGCGTGTTAGCGGTTGGATTAGCTGTTATGAGCATGTGGT
66 GCATTTGGCATGTTAGCGATTGGATCAGCTCTTATGAACATGTGGT
* *
97991275 GTGTTTTCAGTTGGATTAGCTCTTATAAGCATTTGGCGTGTTTTTGGTTGGATTA
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGAGTGTTTTTGGTTGGATTA
97991330 CTTGTGTACT
Statistics
Matches: 149, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
111 149 1.00
ACGTcount: A:0.18, C:0.10, G:0.29, T:0.43
Consensus pattern (111 bp):
GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGAGTGTTTTTGGTTGGATTAGCTCTGATGA
GCATTTGGCATGTTAGCGATTGGATCAGCTCTTATGAACATGTGGT
Found at i:97991317 original size:37 final size:37
Alignment explanation
Indices: 97991016--97991329 Score: 353
Period size: 37 Copynumber: 8.5 Consensus size: 37
97991006 GTGCCGTGGT
* * * * *
97991016 GTGTTATCAGATGGATTAGTTCTTGTGAGCATTTTGC
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGC
* * *
97991053 GTGTTATCAGTTGGATTAGATCTTATGAGCATTTGGT
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGC
*
97991090 GTGTTATT-GGTTGGATTAGCTCTTATGAGCATTTGGC
1 GTGTT-TTCAGTTGGATTAGCTCTTATGAGCATTTGGC
* * * *
97991127 ATGTTTTC-GATTGGATCAGCTCTTATGAACATTTGGT
1 GTGTTTTCAG-TTGGATTAGCTCTTATGAGCATTTGGC
*
97991164 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGA
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGC
* ** *
97991201 ATGTTTTTGGTTGGATTAGCTCTGATGAGCATTTGGC
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGC
** * * * *
97991238 GTGTTAGCGGTTGGATTAGCTGTTATGAGCATGTGGT
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGC
*
97991275 GTGTTTTCAGTTGGATTAGCTCTTATAAGCATTTGGC
1 GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGC
**
97991312 GTGTTTTTGGTTGGATTA
1 GTGTTTTCAGTTGGATTA
97991330 CTTGTGTACT
Statistics
Matches: 234, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
36 3 0.01
37 229 0.98
38 2 0.01
ACGTcount: A:0.18, C:0.10, G:0.28, T:0.43
Consensus pattern (37 bp):
GTGTTTTCAGTTGGATTAGCTCTTATGAGCATTTGGC
Found at i:97995073 original size:46 final size:46
Alignment explanation
Indices: 97995023--97995198 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
97995013 TGGTTGAACA
97995023 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
97995069 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GA-GG-TG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAA-T--G
* * **
97995114 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
97995162 CCCGAGCTCGTTGAGTTGAGTCTGATTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97995199 GCAGGTTACT
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.58
47 28 0.26
48 2 0.02
49 2 0.02
50 2 0.02
51 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:98000368 original size:26 final size:26
Alignment explanation
Indices: 98000337--98000444 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
98000327 TGAAATGCCC
*
98000337 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
98000363 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
98000389 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
98000415 ATCATGGAACATTTACCTAACCCGTT
1 ATCATGGAACATTTACCTAACCCATT
98000441 ATCA
1 ATCA
98000445 ATTTGTATTA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:98005338 original size:12 final size:12
Alignment explanation
Indices: 98005321--98005351 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
98005311 AGTACTACCT
98005321 CGGCCTCGACCA
1 CGGCCTCGACCA
98005333 CGGCCTCGACCA
1 CGGCCTCGACCA
98005345 CGGCCTC
1 CGGCCTC
98005352 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:98008592 original size:26 final size:26
Alignment explanation
Indices: 98008485--98008584 Score: 164
Period size: 26 Copynumber: 3.8 Consensus size: 26
98008475 TGAAATGTCC
* *
98008485 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAATATTTACCTAATCCATT
*
98008511 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATT
*
98008537 AGCATGGAATATTTACCTAATCCATT
1 ATCATGGAATATTTACCTAATCCATT
98008563 ATCATGGAATATTTACCTAATC
1 ATCATGGAATATTTACCTAATC
98008585 TGTTATCAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (26 bp):
ATCATGGAATATTTACCTAATCCATT
Found at i:98021102 original size:40 final size:40
Alignment explanation
Indices: 98021065--98021289 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
98021055 GCTACTCGTT
* *
98021065 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
98021105 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
98021145 CAAATGCCTTCGGTACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
98021185 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
98021224 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
98021265 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
98021290 CATCATTCGA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 115 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:98021249 original size:119 final size:120
Alignment explanation
Indices: 98021067--98021282 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
98021057 TACTCGTTCA
*
98021067 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
98021132 TTAGTAAC-TCGCACAAATGCCTTCGGTACTTAACCTGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
* * **
98021187 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
98021249 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
98021283 GCCCGGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 59 0.71
120 20 0.24
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
Found at i:98021273 original size:79 final size:79
Alignment explanation
Indices: 98021065--98021289 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 79
98021055 GCTACTCGTT
* * * * * * *
98021065 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGTACTTAACCTGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
98021130 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
98021145 CAAATGCCTTCGGTACTTAACCTGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGTACTTAACCTGGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
98021209 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * *
98021224 CAAATGCCTTCGG-ATCTTAGTCC-GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGTA-CTTA-ACCTGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCC
98021287 GGA
63 GGA
98021290 CATCATTCGA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.48
80 60 0.48
81 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGTACTTAACCTGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:98022483 original size:56 final size:56
Alignment explanation
Indices: 98022421--98022530 Score: 211
Period size: 56 Copynumber: 2.0 Consensus size: 56
98022411 TTTATTGCCA
98022421 TGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCTG
1 TGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCTG
*
98022477 TGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTTGCC
1 TGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCC
98022531 CATCATCCCT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.47
Consensus pattern (56 bp):
TGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCTG
Found at i:98025060 original size:37 final size:37
Alignment explanation
Indices: 98025001--98025133 Score: 158
Period size: 37 Copynumber: 3.6 Consensus size: 37
98024991 CTTAGTGACA
* * *
98025001 TGGCATGTTATCAGCTGGATTAGCTCTTGTGAGCATT
1 TGGCATGTTATCGGTTGGATTAGCTCTTATGAGCATT
* *
98025038 TGGCATGTTATCGGTTGAATTAGATCTTATGAGCATT
1 TGGCATGTTATCGGTTGGATTAGCTCTTATGAGCATT
* * *
98025075 TGGCGTGTTATCGATTGGATTAACTCTTATGAGCATT
1 TGGCATGTTATCGGTTGGATTAGCTCTTATGAGCATT
* * * *
98025112 TTGTATGTTTTCAGTTGGATTA
1 TGGCATGTTATCGGTTGGATTA
98025134 CTTATGTACT
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.42
Consensus pattern (37 bp):
TGGCATGTTATCGGTTGGATTAGCTCTTATGAGCATT
Found at i:98026999 original size:65 final size:66
Alignment explanation
Indices: 98026872--98026999 Score: 161
Period size: 65 Copynumber: 1.9 Consensus size: 66
98026862 TACTATGTGT
* * * * * *
98026872 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAACTACGAGATAAATG-AGCTAGGTCACATGGGTGGTACCAAGTGAA
98026937 GG
65 GG
*
98026939 ACACCATG-AGACAAGAGAACTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAACTACGAGATAAA-TGAGCTAGGTCACATGGGTGGTACCAAGTG
98027000 TTAACCATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 23 0.43
66 20 0.38
67 10 0.19
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (66 bp):
ACACCATGTAGACAAGAGAACTACGAGATAAATGAGCTAGGTCACATGGGTGGTACCAAGTGAAG
G
Found at i:98030532 original size:16 final size:15
Alignment explanation
Indices: 98030508--98030537 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
98030498 TTCCAACAGC
98030508 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
98030523 AAAAAGAAAGAAAAA
1 AAAAA-AAAGAAAAA
98030538 CAATTTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:98030695 original size:15 final size:15
Alignment explanation
Indices: 98030675--98030703 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
98030665 TTTAACCCTT
98030675 TTAATTAAATTTATG
1 TTAATTAAATTTATG
98030690 TTAATTAAATTTAT
1 TTAATTAAATTTAT
98030704 AAAGGTTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TTAATTAAATTTATG
Found at i:98031249 original size:43 final size:43
Alignment explanation
Indices: 98031189--98031394 Score: 342
Period size: 43 Copynumber: 4.8 Consensus size: 43
98031179 TTTATTGGAA
* *
98031189 AAAAACGCCGCTAAAGGTTAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
98031232 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGG-GTTTTTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
98031274 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
98031317 AAAAGCGCCGCTATAGGTCAAGGCTTTTAGCGGCGTTTGTGGA
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
98031360 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
98031395 CTTTTTTTAC
Statistics
Matches: 153, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
42 41 0.27
43 112 0.73
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:98031337 original size:85 final size:86
Alignment explanation
Indices: 98031188--98031394 Score: 344
Period size: 85 Copynumber: 2.4 Consensus size: 86
98031178 GTTTATTGGA
* *
98031188 AAAAAACGCCGCTAAAGGTTAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAA
1 AAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAA
*
98031253 GGCTTTTAGCGG-GTTTTTGG
66 GGCTTTTAGCGGCGTTTGTGG
* * *
98031273 GAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTATAGGTCAA
1 AAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAA
98031338 GGCTTTTAGCGGCGTTTGTGG
66 GGCTTTTAGCGGCGTTTGTGG
*
98031359 AAAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCG
1 AAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
98031395 CTTTTTTTAC
Statistics
Matches: 113, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
85 72 0.64
86 41 0.36
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (86 bp):
AAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAA
GGCTTTTAGCGGCGTTTGTGG
Found at i:98031412 original size:43 final size:42
Alignment explanation
Indices: 98031175--98031417 Score: 310
Period size: 43 Copynumber: 5.6 Consensus size: 42
98031165 AAAATTTTGT
* *
98031175 GGCGTTTATTGGAAAAAAACGCCGCTAAAGGTTAAGGCTTTTAGC
1 GGCGTTT-TTGG--AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
*
98031220 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTT-TTGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
98031263 GG-GTTTTTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTTT-GGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* *
98031305 GGCGTTTGTGGTAAAAGCGCCGCTATAGGTCAAGGCTTTTAGC
1 GGCGTTTTTGG-AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* *
98031348 GGCGTTTGTGGAAAAAGCGCCGCTAAACGTCAAGGCTTTTAGC
1 GGCGTTTTTGG-AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
**
98031391 GGCGCTTTTTTTACAAA-CGCCGCTAAA
1 GGCG-TTTTTGGA-AAAGCGCCGCTAAA
98031418 TTTTGCAGAT
Statistics
Matches: 180, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
41 1 0.01
42 41 0.23
43 121 0.67
44 7 0.04
45 10 0.06
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (42 bp):
GGCGTTTTTGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:98031503 original size:31 final size:31
Alignment explanation
Indices: 98031468--98031548 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 31
98031458 CTTCCTGCAT
* *
98031468 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * *
98031499 TAAAATGCAGCCAAAAACAACAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
98031530 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
98031549 TATTAATTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 27 0.66
33 14 0.34
ACGTcount: A:0.63, C:0.19, G:0.02, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:98037496 original size:9 final size:9
Alignment explanation
Indices: 98037482--98037707 Score: 152
Period size: 9 Copynumber: 24.6 Consensus size: 9
98037472 TATTTAAGTA
98037482 TTATGTAAG
1 TTATGTAAG
*
98037491 TTATGTAAT
1 TTATGTAAG
*
98037500 TTATGATATG
1 TTATG-TAAG
* * *
98037510 ATATAT-AT
1 TTATGTAAG
*
98037518 TTATGTAAA
1 TTATGTAAG
* *
98037527 TTATAT-AT
1 TTATGTAAG
*
98037535 TTATCTAAG
1 TTATGTAAG
*
98037544 TTATATAAG
1 TTATGTAAG
98037553 TTATGTAAG
1 TTATGTAAG
*
98037562 TTATGTAAA
1 TTATGTAAG
*
98037571 TTATGATATAAAA
1 TTATG---T-AAG
*
98037584 TATATTTAAG
1 T-TATGTAAG
98037594 TATTATGTAAG
1 --TTATGTAAG
98037605 TTATGTAAG
1 TTATGTAAG
*
98037614 TTATGT-AT
1 TTATGTAAG
*
98037622 TTATCTAAG
1 TTATGTAAG
*
98037631 TTATATAAG
1 TTATGTAAG
*
98037640 TTATATAAG
1 TTATGTAAG
*
98037649 TTATGTAGG
1 TTATGTAAG
*
98037658 TTATATAAG
1 TTATGTAAG
98037667 TTATGTAAG
1 TTATGTAAG
* *
98037676 TTATATATG
1 TTATGTAAG
*
98037685 TTATATAAG
1 TTATGTAAG
*
98037694 TTATGTAAA
1 TTATGTAAG
98037703 TTATG
1 TTATG
98037708 ATATCAAATA
Statistics
Matches: 172, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
8 16 0.09
9 132 0.77
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:98037561 original size:18 final size:18
Alignment explanation
Indices: 98037482--98037707 Score: 170
Period size: 18 Copynumber: 12.3 Consensus size: 18
98037472 TATTTAAGTA
* *
98037482 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
98037500 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
98037518 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
98037535 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
98037553 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
98037571 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
98037594 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* *
98037614 TTATGT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
98037631 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
98037649 TTATGTAGGTTATATAAG
1 TTATGTAAGTTATATAAG
*
98037667 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
98037685 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
98037703 TTATG
1 TTATG
98037708 ATATCAAATA
Statistics
Matches: 167, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
17 36 0.22
18 98 0.59
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.04
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:98037574 original size:27 final size:27
Alignment explanation
Indices: 98037535--98037707 Score: 168
Period size: 27 Copynumber: 6.2 Consensus size: 27
98037525 AATTATATAT
*
98037535 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
98037562 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* *
98037594 TATTATGTAAGTTATGTAAGTTATGT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
98037622 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
*
98037649 TTATGTAGGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
98037676 TTATATATGTTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAGTTATGTAAG
98037703 TTATG
1 TTATG
98037708 ATATCAAATA
Statistics
Matches: 118, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
26 21 0.18
27 58 0.49
28 4 0.03
29 5 0.04
30 7 0.06
31 6 0.05
32 8 0.07
33 3 0.03
34 6 0.05
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.46
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:98037592 original size:114 final size:114
Alignment explanation
Indices: 98037458--98037679 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
98037448 ACTAGTTATG
* * * *
98037458 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATG-ATATGATATATATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGTATAT-ATATA-AGTTAT
* *
98037522 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
98037572 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGTATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGTATATATATAAGTTATAT
* * *
98037637 AAGTTATATAAGTTATGTAGGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
98037680 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
113 14 0.15
114 78 0.82
115 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGTATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:98037831 original size:15 final size:15
Alignment explanation
Indices: 98037811--98037866 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
98037801 TAAGTAGCGG
98037811 AATTAAATAATATTT
1 AATTAAATAATATTT
98037826 AATTAAATAATATTT
1 AATTAAATAATATTT
98037841 -A-TAAA-AATTATTTT
1 AATTAAATAA-TA-TTT
98037855 AATTAAATAATA
1 AATTAAATAATA
98037867 GACATGTCGT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTAAATAATATTT
Found at i:98038072 original size:24 final size:24
Alignment explanation
Indices: 98038044--98038111 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
98038034 ACTTAAATGG
98038044 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
98038068 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
98038092 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
98038112 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:98039050 original size:373 final size:372
Alignment explanation
Indices: 98038199--98039112 Score: 1783
Period size: 373 Copynumber: 2.5 Consensus size: 372
98038189 AATTGAAACA
98038199 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
98038264 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
98038329 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
98038394 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
98038459 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
261 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
*
98038524 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTTTT
326 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
98038571 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
98038636 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
98038701 AATAAGGTTGGAGAGAAAGTCAGTTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
98038766 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATA
98038831 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
260 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
98038896 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
325 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
98038944 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
*
98039009 CAGCTCGATATAAGGCAACCCGTTAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
98039074 AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
98039113 AATGGACAAG
Statistics
Matches: 536, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
372 237 0.44
373 299 0.56
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (372 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATAT
AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
Found at i:98042349 original size:134 final size:133
Alignment explanation
Indices: 98042179--98042431 Score: 479
Period size: 134 Copynumber: 1.9 Consensus size: 133
98042169 GAATTCAACA
98042179 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
98042244 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
66 TAAGTTGGATAGAAACATG-AAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
98042309 TATT
130 TATT
*
98042313 ATATAAAACGTGGGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
*
98042378 TAAGTTGGATAGAAACATGAAAACAGACCAAAATAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
98042432 GGAATCACCA
Statistics
Matches: 117, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
133 34 0.29
134 83 0.71
ACGTcount: A:0.51, C:0.19, G:0.10, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:98045185 original size:10 final size:11
Alignment explanation
Indices: 98045169--98045214 Score: 56
Period size: 12 Copynumber: 3.9 Consensus size: 11
98045159 ACCACTTTCC
98045169 ATATATATATTT
1 ATATATAT-TTT
98045181 ATATATATTTT
1 ATATATATTTT
*
98045192 AAAATAATATTTT
1 -ATAT-ATATTTT
98045205 ATATATATTT
1 ATATATATTT
98045215 ATCTTATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 9 0.30
12 14 0.47
13 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATATATATTTT
Found at i:98045223 original size:15 final size:15
Alignment explanation
Indices: 98045203--98045234 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
98045193 AAATAATATT
*
98045203 TTATATATATTTATC
1 TTATATACATTTATC
98045218 TTATATACATTTATC
1 TTATATACATTTATC
98045233 TT
1 TT
98045235 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:98046115 original size:14 final size:13
Alignment explanation
Indices: 98046096--98046129 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
98046086 ATTGAACCTG
98046096 CTTAAACCATATAT
1 CTTAAACCATA-AT
98046110 CTTAAACCATAAT
1 CTTAAACCATAAT
98046123 CATTAAA
1 C-TTAAA
98046130 ATATAATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.16
14 16 0.84
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (13 bp):
CTTAAACCATAAT
Found at i:98046346 original size:40 final size:40
Alignment explanation
Indices: 98046292--98046430 Score: 183
Period size: 40 Copynumber: 3.4 Consensus size: 40
98046282 GGGTTATGGG
98046292 GTTTTTAGCGGCGTTTTACCTAAAGCGCCGC-AATGCTCT
1 GTTTTTAGCGGCGTTTTACCTAAAGCGCCGCGAATGCTCT
* *
98046331 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCACTAATGCTCT
1 -GTTTTTAGCGGCGTTTTACCTAAAGCGCCGCGAATGCTCT
* *
98046372 GTTTTTAGCGGCGTTTTA-GTAAAAAAACGCCGCGAATGCTCT
1 GTTTTTAGCGGCGTTTTACCT---AAAGCGCCGCGAATGCTCT
*
98046414 GTTTTTACCGGCGTTTT
1 GTTTTTAGCGGCGTTTT
98046431 TTTGGAACGC
Statistics
Matches: 89, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 48 0.54
41 8 0.09
42 32 0.36
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.35
Consensus pattern (40 bp):
GTTTTTAGCGGCGTTTTACCTAAAGCGCCGCGAATGCTCT
Found at i:98053745 original size:35 final size:35
Alignment explanation
Indices: 98053706--98053975 Score: 278
Period size: 35 Copynumber: 7.7 Consensus size: 35
98053696 ATGGCAAAGT
* **
98053706 TATGACACGTAGGTATGGTATTGTCCATATTGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACCGAGC
* * * *
98053741 TATGACACATAGGTATGGTATTATCCATATCGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACCGAGC
*
98053776 TAT-AATACGTAGGTATGGTATT-TCTCATACCGAGT
1 TATGAA-ACGTAGGTATGGTATTGTC-CATACCGAGC
* * *
98053811 TGTGAAACGTAAGTATGGTATTGTCCATACTGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACCGAGC
* *
98053846 TATGAAACGTAGGTATGGTATTATCCAAACCGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACCGAGC
* *
98053881 TAT-AATATGTAGGTATGGTATT-TCACATACCGAGT
1 TATGAA-ACGTAGGTATGGTATTGTC-CATACCGAGC
* * **
98053916 TGTGAAACGTAGGTATCGTATTGTCCATACTAAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACCGAGC
* *
98053951 GATGAAACGTAGATATGGTAGTTGT
1 TATGAAACGTAGGTATGGTA-TTGT
98053976 AACGGCCCAA
Statistics
Matches: 197, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
34 7 0.04
35 178 0.90
36 12 0.06
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (35 bp):
TATGAAACGTAGGTATGGTATTGTCCATACCGAGC
Found at i:98053867 original size:105 final size:105
Alignment explanation
Indices: 98053703--98053970 Score: 410
Period size: 105 Copynumber: 2.6 Consensus size: 105
98053693 TCCATGGCAA
* * * * *
98053703 AGTTATGACACGTAGGTATGGTATTGTCCATATTGAGCTATGACACATAGGTATGGTATTATCCA
1 AGTTGTGAAACGTAGGTATGGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTATCCA
* * *
98053768 TATCGAGCTATAATACGTAGGTATGGTATTTCTCATACCG
66 AACCGAGCTATAATACGTAGGTATGGTATTTCACATACCG
*
98053808 AGTTGTGAAACGTAAGTATGGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTATCCA
1 AGTTGTGAAACGTAGGTATGGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTATCCA
*
98053873 AACCGAGCTATAATATGTAGGTATGGTATTTCACATACCG
66 AACCGAGCTATAATACGTAGGTATGGTATTTCACATACCG
* * * *
98053913 AGTTGTGAAACGTAGGTATCGTATTGTCCATACTAAGCGATGAAACGTAGATATGGTA
1 AGTTGTGAAACGTAGGTATGGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTA
98053971 GTTGTAACGG
Statistics
Matches: 148, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
105 148 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (105 bp):
AGTTGTGAAACGTAGGTATGGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTATCCA
AACCGAGCTATAATACGTAGGTATGGTATTTCACATACCG
Found at i:98071687 original size:20 final size:20
Alignment explanation
Indices: 98071647--98071688 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
98071637 CTCGATTAGC
*
98071647 ATTAACATTGTTGTCAATAT
1 ATTAACATTGTTGCCAATAT
*
98071667 ATTAACATTGTTGCCAGTAT
1 ATTAACATTGTTGCCAATAT
98071687 AT
1 AT
98071689 GAGGATGGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (20 bp):
ATTAACATTGTTGCCAATAT
Found at i:98073832 original size:46 final size:47
Alignment explanation
Indices: 98073772--98073945 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 47
98073762 TTTGACGTGA
* * * * *
98073772 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
**
98073818 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* *
98073864 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* *
98073910 TGCCATGGTATCTTTCAAACATAGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
98073946 CATATCAGGT
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
45 5 0.04
46 107 0.94
47 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
Found at i:98090310 original size:27 final size:27
Alignment explanation
Indices: 98090280--98090331 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
98090270 AAATTTATTA
98090280 ATTTTTT-TCTA-ATTTAGTCTCTAAATT
1 ATTTTTTATCTATA-TTAGTC-CTAAATT
98090307 ATTTTTTATCTATATTAGTCCTAAA
1 ATTTTTTATCTATATTAGTCCTAAA
98090332 CTTGGGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 12 0.52
28 10 0.43
29 1 0.04
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.56
Consensus pattern (27 bp):
ATTTTTTATCTATATTAGTCCTAAATT
Found at i:98090313 original size:28 final size:27
Alignment explanation
Indices: 98090276--98090331 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
98090266 CTTTAAATTT
*
98090276 ATTAATTTTTTTCTA-ATTTAGTCTCTAA
1 ATTAATTTTTATCTATA-TTAGTC-CTAA
*
98090304 ATTATTTTTTATCTATATTAGTCCTAA
1 ATTAATTTTTATCTATATTAGTCCTAA
98090331 A
1 A
98090332 CTTGGGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.20
28 19 0.76
29 1 0.04
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.55
Consensus pattern (27 bp):
ATTAATTTTTATCTATATTAGTCCTAA
Found at i:98096927 original size:3 final size:3
Alignment explanation
Indices: 98096919--98096945 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
98096909 AGTACAAAAC
98096919 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
98096946 TATTGTATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:98104720 original size:42 final size:42
Alignment explanation
Indices: 98104673--98104752 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
98104663 CTTAATAATT
* *
98104673 AGGGGTTAATTCAATTGATAGAGTTTACCCATGTGCTTCAAA
1 AGGGGTTAATTCAATGGATAGAGTTTACCCATGAGCTTCAAA
*
98104715 AGGGGTTAATTCAATGGATAGAGTTTATCCATGAGCTT
1 AGGGGTTAATTCAATGGATAGAGTTTACCCATGAGCTT
98104753 GAAAGCGACT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (42 bp):
AGGGGTTAATTCAATGGATAGAGTTTACCCATGAGCTTCAAA
Found at i:98105809 original size:90 final size:89
Alignment explanation
Indices: 98105680--98105863 Score: 235
Period size: 90 Copynumber: 2.1 Consensus size: 89
98105670 AATTTTTTAT
* * * * *
98105680 AAAAAAGCAATTAAGCCCCTCCTTTTTTTTTCACTCAATTA-AGTATTTGAACTTTTAAAATGCA
1 AAAAAAGCAATTAAGCCCCTCCTTTTCTTTCCACTCAATTAGA-TACTTGAACTTTCAAAATGAA
* * *
98105744 CCAAAAAGGCCCTTAAACTTCTTCA
65 CCAAAAAGACCCTCAAAATTCTTCA
*
98105769 AAAAAAGCAATTAAGCCCCTACCTTTTCTTTCCACTCAATTGGATACTTGAACTTTCAAAATGAA
1 AAAAAAGCAATTAAGCCCCT-CCTTTTCTTTCCACTCAATTAGATACTTGAACTTTCAAAATGAA
** *
98105834 TTAAAAAGACCCTCAAAATTTTTCA
65 CCAAAAAGACCCTCAAAATTCTTCA
98105859 AAAAA
1 AAAAA
98105864 GACCCTCAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
89 20 0.25
90 60 0.74
91 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.32
Consensus pattern (89 bp):
AAAAAAGCAATTAAGCCCCTCCTTTTCTTTCCACTCAATTAGATACTTGAACTTTCAAAATGAAC
CAAAAAGACCCTCAAAATTCTTCA
Found at i:98105852 original size:22 final size:22
Alignment explanation
Indices: 98105824--98105875 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
98105814 ACTTGAACTT
98105824 TCAAAATGAATT-AAAAAGACCC
1 TCAAAAT-AATTAAAAAAGACCC
**
98105846 TCAAAATTTTTCAAAAAAGACCC
1 TCAAAATAATT-AAAAAAGACCC
98105869 TCAAAAT
1 TCAAAAT
98105876 TTTTCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.08
22 7 0.27
23 17 0.65
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.23
Consensus pattern (22 bp):
TCAAAATAATTAAAAAAGACCC
Found at i:98105878 original size:22 final size:23
Alignment explanation
Indices: 98105836--98105886 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
98105826 AAAATGAATT
98105836 AAAAAGACCCTCAAAATTTTTCA
1 AAAAAGACCCTCAAAATTTTTCA
98105859 AAAAAGACCCTCAAAATTTTTCA
1 AAAAAGACCCTCAAAATTTTTCA
98105882 AAAAA
1 AAAAA
98105887 TCAATAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.53, C:0.20, G:0.04, T:0.24
Consensus pattern (23 bp):
AAAAAGACCCTCAAAATTTTTCA
Found at i:98106056 original size:18 final size:17
Alignment explanation
Indices: 98106031--98106069 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
98106021 ATTTTGCAAC
98106031 TTTTTATTTTTT-TACAT
1 TTTTTATTTTTTCTA-AT
98106048 TTTTCTATTTTTTCTAAT
1 TTTT-TATTTTTTCTAAT
98106066 TTTT
1 TTTT
98106070 AATATTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 14 0.70
19 2 0.10
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTATTTTTTCTAAT
Found at i:98109274 original size:8 final size:8
Alignment explanation
Indices: 98109261--98109289 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
98109251 AACATTTAAA
98109261 AAATTATT
1 AAATTATT
98109269 AAATTATT
1 AAATTATT
98109277 AAATTATT
1 AAATTATT
98109285 AAATT
1 AAATT
98109290 TTATTACAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AAATTATT
Found at i:98125402 original size:16 final size:15
Alignment explanation
Indices: 98125373--98125415 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
98125363 TAATGATGAA
98125373 ATAATAAT-AATAAT
1 ATAATAATAAATAAT
98125387 AGTGAA-AATAAATAAT
1 A-T-AATAATAAATAAT
98125403 ATAATAATAAATA
1 ATAATAATAAATA
98125416 TAATAGTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.12
15 13 0.52
16 9 0.36
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
ATAATAATAAATAAT
Found at i:98126670 original size:13 final size:13
Alignment explanation
Indices: 98126652--98126676 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98126642 ACTACAGCAA
98126652 TAATATATATTTT
1 TAATATATATTTT
98126665 TAATATATATTT
1 TAATATATATTT
98126677 AATATGTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATATATATTTT
Found at i:98132319 original size:5 final size:5
Alignment explanation
Indices: 98132308--98132342 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
98132298 AAATATGTGT
*
98132308 TTTTCA TTTCA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
98132343 CACATATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 24 0.89
6 3 0.11
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:98132336 original size:15 final size:16
Alignment explanation
Indices: 98132308--98132344 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
98132298 AAATATGTGT
98132308 TTTTCATTTCATTTTA
1 TTTTCATTTCATTTTA
*
98132324 TTTT-ATTTTATTTTA
1 TTTTCATTTCATTTTA
98132339 TTTTCA
1 TTTTCA
98132345 CATATAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTCATTTCATTTTA
Found at i:98136156 original size:3 final size:3
Alignment explanation
Indices: 98136150--98136177 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
98136140 AATATTAATG
98136150 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
98136178 GAATTTAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:98136363 original size:22 final size:21
Alignment explanation
Indices: 98136324--98136368 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
98136314 TTATAAAAAT
*
98136324 TATTTTATATTGATATTTTATA
1 TATTTTATATTGA-AATTTATA
98136346 TATTTTATAATT-AAATTTATA
1 TATTTTAT-ATTGAAATTTATA
98136367 TA
1 TA
98136369 AAAATATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 9 0.43
23 3 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTTTATATTGAAATTTATA
Found at i:98150606 original size:22 final size:22
Alignment explanation
Indices: 98150576--98150627 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
98150566 AATAATATAG
* *
98150576 AAAAGCACTTACAACTTGAAAT
1 AAAAACACTTACAAATTGAAAT
98150598 AAAAACACTTACAAATTGAAAT
1 AAAAACACTTACAAATTGAAAT
98150620 AAAAACAC
1 AAAAACAC
98150628 ATCCATATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.58, C:0.17, G:0.06, T:0.19
Consensus pattern (22 bp):
AAAAACACTTACAAATTGAAAT
Found at i:98155217 original size:24 final size:24
Alignment explanation
Indices: 98155185--98155230 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
98155175 ATTACAAAAG
* *
98155185 ATAAAAGAAGGTTTTTTTTTTTTT
1 ATAAAAGAAGGGTTTTTCTTTTTT
98155209 ATAAAAGAAGGGTTTTTCTTTT
1 ATAAAAGAAGGGTTTTTCTTTT
98155231 CCCTTTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.52
Consensus pattern (24 bp):
ATAAAAGAAGGGTTTTTCTTTTTT
Found at i:98159505 original size:92 final size:89
Alignment explanation
Indices: 98159409--98159633 Score: 283
Period size: 91 Copynumber: 2.5 Consensus size: 89
98159399 TTAAAGGTGT
* * * *
98159409 AAAAAGCCCTCAAATTTTTCAAAAAAAAAAGCAATTAAGCCCCTCCTTTTTTTTTATACTCAATT
1 AAAAAACCCTCAAATTTTTC--AAAAAAAAGCAATTAAGCCCCTACTTTTGTTTT-CACTCAATT
98159474 GAGCACTTGAACTTTCAAAATACATAAA
63 GAGCACTTGAACTTTCAAAATACAT-AA
* *
98159502 AAAAAATCCCTCAAACTTCTT-AAAAAAAAGCAATTAAACCCCTACTTTTGTTTTCACTCAATTG
1 AAAAAA-CCCTCAAA-TTTTTCAAAAAAAAGCAATTAAGCCCCTACTTTTGTTTTCACTCAATTG
* * * *
98159566 AGTATTTGAACTTTCAAAATGCATCA
64 AGCACTTGAACTTTCAAAATACATAA
98159592 AAAAAACCCTCAAAATTTTTC-AAAAAAAGCAATTAAGCCCCT
1 AAAAAACCCTC-AAATTTTTCAAAAAAAAGCAATTAAGCCCCT
98159634 GATCTTATTA
Statistics
Matches: 116, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
89 29 0.25
90 10 0.09
91 30 0.26
92 30 0.26
93 5 0.04
94 8 0.07
95 4 0.03
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (89 bp):
AAAAAACCCTCAAATTTTTCAAAAAAAAGCAATTAAGCCCCTACTTTTGTTTTCACTCAATTGAG
CACTTGAACTTTCAAAATACATAA
Found at i:98159578 original size:91 final size:90
Alignment explanation
Indices: 98159431--98159633 Score: 282
Period size: 89 Copynumber: 2.2 Consensus size: 90
98159421 AATTTTTCAA
* * *
98159431 AAAAAAAAGCAATTAAGCCCCTCCTTTTTTTTTATACTCAATTGAGCACTTGAACTTTCAAAATA
1 AAAAAAAAGCAATTAAGCCCCTACTTTTGTTTTACACTCAATTGAGCACTTGAACTTTCAAAATA
*
98159496 CATAAAAAAAAATCCCTCAAACTTCTT
66 CAT-AAAAAAAA-CCCTCAAAATTCTT
* * * *
98159523 AAAAAAAAGCAATTAAACCCCTACTTTTGTTTT-CACTCAATTGAGTATTTGAACTTTCAAAATG
1 AAAAAAAAGCAATTAAGCCCCTACTTTTGTTTTACACTCAATTGAGCACTTGAACTTTCAAAATA
* *
98159587 CATCAAAAAAACCCTCAAAATTTTT
66 CATAAAAAAAACCCTCAAAATTCTT
*
98159612 CAAAAAAAGCAATTAAGCCCCT
1 AAAAAAAAGCAATTAAGCCCCT
98159634 GATCTTATTA
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
89 32 0.32
90 7 0.07
91 30 0.30
92 30 0.30
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.30
Consensus pattern (90 bp):
AAAAAAAAGCAATTAAGCCCCTACTTTTGTTTTACACTCAATTGAGCACTTGAACTTTCAAAATA
CATAAAAAAAACCCTCAAAATTCTT
Found at i:98159713 original size:19 final size:19
Alignment explanation
Indices: 98159652--98159715 Score: 53
Period size: 19 Copynumber: 3.5 Consensus size: 19
98159642 TAAAAATTAG
*
98159652 AAAAAAATATAAT--AAAT
1 AAAAAATTATAATAAAAAT
* *
98159669 AATAAATT-TTATAAAAATT
1 AAAAAATTATAATAAAAA-T
**
98159688 ATTAAATTATAATAAAAAT
1 AAAAAATTATAATAAAAAT
98159707 AAAAAATTA
1 AAAAAATTA
98159716 AAATTTATTA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
16 3 0.08
17 6 0.17
18 3 0.08
19 16 0.44
20 8 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAAATTATAATAAAAAT
Found at i:98159996 original size:10 final size:9
Alignment explanation
Indices: 98159981--98160053 Score: 56
Period size: 9 Copynumber: 7.7 Consensus size: 9
98159971 TTATTACGAC
98159981 TTTATAAAAT
1 TTTAT-AAAT
98159991 TTTATAAAT
1 TTTATAAAT
* *
98160000 TTTTTATAT
1 TTTATAAAT
*
98160009 TTCTATATAT
1 TT-TATAAAT
98160019 TTTATAAAT
1 TTTATAAAT
***
98160028 CTTTATGTTT
1 -TTTATAAAT
98160038 TTTATAAAAT
1 TTTAT-AAAT
98160048 TTTATA
1 TTTATA
98160054 GTTTTACAAT
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
9 25 0.50
10 25 0.50
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTATAAAT
Found at i:98160040 original size:19 final size:20
Alignment explanation
Indices: 98160018--98160058 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
98160008 TTTCTATATA
98160018 TTTTAT-AAATCTTTAT-GTT
1 TTTTATAAAAT-TTTATAGTT
98160037 TTTTATAAAATTTTATAGTT
1 TTTTATAAAATTTTATAGTT
98160057 TT
1 TT
98160059 ACAATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTATAAAATTTTATAGTT
Found at i:98160043 original size:28 final size:29
Alignment explanation
Indices: 98159983--98160053 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 29
98159973 ATTACGACTT
*
98159983 TATAAAATTTTATAAATTTTTTATATTTC
1 TATAAAATTTTATAAATTCTTTATATTTC
* * *
98160012 TAT-ATATTTTATAAA-TCTTTATGTTTTT
1 TATAAAATTTTATAAATTCTTTAT-ATTTC
98160040 TATAAAATTTTATA
1 TATAAAATTTTATA
98160054 GTTTTACAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 6 0.17
28 17 0.49
29 12 0.34
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (29 bp):
TATAAAATTTTATAAATTCTTTATATTTC
Found at i:98161301 original size:42 final size:42
Alignment explanation
Indices: 98161250--98161623 Score: 439
Period size: 42 Copynumber: 8.9 Consensus size: 42
98161240 GTTTACAAAC
* *
98161250 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
98161292 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
98161334 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
98161376 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AA
* * * *
98161418 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
98161460 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-ATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* * * ****
98161502 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-CTTAGAA
** * * * ****
98161545 CTAATCGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* * *
98161586 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
98161624 TTATACAAAA
Statistics
Matches: 293, Mismatches: 33, Indels: 12
0.87 0.10 0.04
Matches are distributed among these distances:
41 39 0.13
42 220 0.75
43 34 0.12
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:98161715 original size:14 final size:14
Alignment explanation
Indices: 98161692--98161725 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
98161682 GCCCTCCTGT
*
98161692 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
98161706 AGCAACATTTCAAA
1 AGCAACATTTCAAA
98161720 AGCAAC
1 AGCAAC
98161726 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:98162017 original size:21 final size:21
Alignment explanation
Indices: 98161949--98162019 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
98161939 TTTTGCTCTG
* *
98161949 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
98161970 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
98161991 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
98162012 CTCTGCTT
1 CTCTGCTT
98162020 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:98167493 original size:18 final size:18
Alignment explanation
Indices: 98167470--98167634 Score: 69
Period size: 18 Copynumber: 9.5 Consensus size: 18
98167460 AATTGCAATG
98167470 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
98167488 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
98167506 GTAAGTTAAATGTAAG-T-T
1 GTAAGTT--ATGTAAGTTAT
*
98167524 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
98167543 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
*
98167561 GT-A-TTGTGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
98167575 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
98167593 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
98167609 -TATGTATTATGTAAG-T-T
1 GTAAG--TTATGTAAGTTAT
98167626 GTAAGTTAT
1 GTAAGTTAT
98167635 TATGTATTGT
Statistics
Matches: 116, Mismatches: 5, Indels: 54
0.66 0.03 0.31
Matches are distributed among these distances:
14 6 0.05
15 8 0.07
16 14 0.12
17 8 0.07
18 61 0.53
19 15 0.13
20 4 0.03
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:98167518 original size:11 final size:9
Alignment explanation
Indices: 98167470--98167634 Score: 69
Period size: 7 Copynumber: 19.0 Consensus size: 9
98167460 AATTGCAATG
98167470 GTAAGTTAT
1 GTAAGTTAT
98167479 GTAAGTTAT
1 GTAAGTTAT
98167488 GTAAGTTAAAT
1 GTAAGTT--AT
98167499 GT-A-TTAT
1 GTAAGTTAT
98167506 GTAAGTTAAAT
1 GTAAGTT--AT
98167517 GTAAG-T-T
1 GTAAGTTAT
98167524 GTAAGTTAT
1 GTAAGTTAT
*
98167533 -TATGTATTAT
1 GTAAG--TTAT
98167543 GTAAG-T-T
1 GTAAGTTAT
98167550 GTAAGTTAAAT
1 GTAAGTT--AT
*
98167561 GT-A-TTGT
1 GTAAGTTAT
98167568 GTAAG-T-T
1 GTAAGTTAT
98167575 GTAAGTTAAAT
1 GTAAGTT--AT
98167586 GT-A-TTAT
1 GTAAGTTAT
98167593 GTAAG-T-T
1 GTAAGTTAT
98167600 GTAAGTTAT
1 GTAAGTTAT
*
98167609 -TATGTATTAT
1 GTAAG--TTAT
98167619 GTAAG-T-T
1 GTAAGTTAT
98167626 GTAAGTTAT
1 GTAAGTTAT
98167635 TATGTATTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 60
0.65 0.03 0.32
Matches are distributed among these distances:
7 41 0.34
8 18 0.15
9 27 0.22
10 12 0.10
11 23 0.19
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:98167545 original size:19 final size:19
Alignment explanation
Indices: 98167484--98167780 Score: 78
Period size: 19 Copynumber: 15.6 Consensus size: 19
98167474 GTTATGTAAG
*
98167484 TTATGTAAGTTA-AATGTA
1 TTATGTAAGTTATTATGTA
*
98167502 TTATGTAAGTTA-AATGTAA
1 TTATGTAAGTTATTATGT-A
*
98167521 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
98167539 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
*
98167564 TTGTGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* *
98167589 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
98167605 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
98167623 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
98167641 TTGTGTAAGTTGCAAGTTAAATGTA
1 TTATGTAAGTT---A-TT--ATGTA
* *
98167666 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
98167682 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
98167700 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
* * *
98167718 TTGTGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
98167734 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
98167752 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
98167770 TTGTGTAAGTT
1 TTATGTAAGTT
98167781 GTAAGTTAAA
Statistics
Matches: 212, Mismatches: 31, Indels: 71
0.68 0.10 0.23
Matches are distributed among these distances:
14 3 0.01
15 18 0.08
16 11 0.05
17 3 0.01
18 53 0.25
19 60 0.28
20 3 0.01
21 1 0.00
22 2 0.01
23 5 0.02
24 1 0.00
25 52 0.25
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (19 bp):
TTATGTAAGTTATTATGTA
Found at i:98167549 original size:26 final size:26
Alignment explanation
Indices: 98167515--98167896 Score: 531
Period size: 26 Copynumber: 15.2 Consensus size: 26
98167505 TGTAAGTTAA
98167515 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
98167541 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
98167566 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
98167591 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
98167617 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* * *
98167643 GTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
98167668 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
98167694 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
98167720 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
98167746 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
98167772 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
98167797 ATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
98167815 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
98167840 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
98167866 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATTATGTATT
98167893 ATGT
1 ATGT
98167897 CGACAAGATT
Statistics
Matches: 323, Mismatches: 21, Indels: 23
0.88 0.06 0.06
Matches are distributed among these distances:
18 12 0.04
19 1 0.00
21 3 0.01
22 3 0.01
24 1 0.00
25 104 0.32
26 179 0.55
27 11 0.03
28 9 0.03
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:98167820 original size:43 final size:46
Alignment explanation
Indices: 98167515--98167897 Score: 277
Period size: 51 Copynumber: 7.7 Consensus size: 46
98167505 TGTAAGTTAA
* * *
98167515 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TATATGTATT
* *
98167566 GTGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCA--TGTAA--TA-TATGTATT
* * * * *
98167617 ATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGCAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TATATGTATT
* *
98167668 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TA-TATGTATT
* * *
98167720 GTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TA-TATGTATT
* *
98167772 GTGTAAGTTGTAAGTTAAATGTATTATGTCA-GTCA-A-ATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCATGTAATATATGTATT
*
98167815 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCA--TGTAA--TA-TATGTATT
98167866 ATGTAAGTAATGTAAGTTAAATGTATTATGTC
1 ATGTAAGT--TGTAAGTTAAATGTATTATGTC
98167898 GACAAGATTT
Statistics
Matches: 300, Mismatches: 19, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
43 36 0.12
45 1 0.00
46 3 0.01
48 3 0.01
49 1 0.00
50 24 0.08
51 114 0.38
52 97 0.32
53 21 0.07
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.46
Consensus pattern (46 bp):
ATGTAAGTTGTAAGTTAAATGTATTATGTCATGTAATATATGTATT
Found at i:98167848 original size:18 final size:18
Alignment explanation
Indices: 98167780--98167823 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
98167770 TTGTGTAAGT
98167780 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
* *
98167798 TGTCAGTCAAATGTATTA
1 TGTAAGTTAAATGTATTA
98167816 TGTAAGTT
1 TGTAAGTT
98167824 GTAAGTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:98170176 original size:7 final size:7
Alignment explanation
Indices: 98170123--98170198 Score: 64
Period size: 7 Copynumber: 10.9 Consensus size: 7
98170113 ACCTTAATCA
*
98170123 CTAAACT
1 CTAAACC
98170130 CTCAAACC
1 CT-AAACC
98170138 CTAAACC
1 CTAAACC
** *
98170145 AAAAACA
1 CTAAACC
98170152 CTAAA-C
1 CTAAACC
* *
98170158 CTACATC
1 CTAAACC
*
98170165 GTAAACC
1 CTAAACC
98170172 CTAAACC
1 CTAAACC
*
98170179 CTAAACT
1 CTAAACC
98170186 CTAAACC
1 CTAAACC
98170193 CTAAAC
1 CTAAAC
98170199 TAGAATTCAA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
6 4 0.08
7 43 0.81
8 6 0.11
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:98170261 original size:17 final size:17
Alignment explanation
Indices: 98170239--98170288 Score: 84
Period size: 17 Copynumber: 3.0 Consensus size: 17
98170229 TATCCTATTT
98170239 CCTACATTATATAATAA
1 CCTACATTATATAATAA
98170256 CCTACATTATATAATAA
1 CCTACATTATATAATAA
*
98170273 ACTACA-TATATAATAA
1 CCTACATTATATAATAA
98170289 TCTAGCGGCG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 10 0.31
17 22 0.69
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (17 bp):
CCTACATTATATAATAA
Found at i:98170491 original size:113 final size:111
Alignment explanation
Indices: 98170310--98170660 Score: 411
Period size: 113 Copynumber: 3.1 Consensus size: 111
98170300 TTCCCACAAC
* * * *
98170310 GCGCCGCTAATAATATGTTTTACCGGCGTTTTACCATAAGCGCCAC-AACTGGTAGTATACATCA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTA-AATAAGCGCCACTAA-T-GTAGTATACATCA
98170374 AGACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
63 AGACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
* * *
98170423 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCGCCACTAATCGTAATGTACCTCAA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTT-AAATAAGCGCCACTAAT-GTAGTATACATCAA
* * * * *
98170488 GACCAAA-CTCTGCGTTTTGGTTAA-GAAATATTGCGGCGCTTTTCACTAC
64 GACCAAAGCGCTGCGTTTTGGTTAATG---TTTTGCGGCGCTTTACAATAA
* * * *
98170537 TCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATAAGCGCCACTACTGCTAGTATACATCAA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTAA-ATAAGCGCCACTAATG-TAGTATACATCAA
* * *
98170602 GACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGTTTTCCAATAA
64 GACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
*
98170650 GCGCCACTAAT
1 GCGCCGCTAAT
98170661 CCTAATATAC
Statistics
Matches: 200, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
111 1 0.00
112 16 0.08
113 87 0.44
114 80 0.40
115 16 0.08
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (111 bp):
GCGCCGCTAATACTATGCTTTAGCGGCGTTTTAAATAAGCGCCACTAATGTAGTATACATCAAGA
CCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
Found at i:98170762 original size:188 final size:188
Alignment explanation
Indices: 98170445--98170842 Score: 688
Period size: 188 Copynumber: 2.1 Consensus size: 188
98170435 CTATGCTTTA
* * * *
98170445 GCGGCGTTTTCAAATAAGCGCCACTAATCGTAATGTACCTCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
98170510 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
66 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
98170575 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
131 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
98170633 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
* * *
98170698 AAGAAATCTTGCGGCGCTTTTCACTACTCGCTGCTAATACTATTCTTTAGTAGCGTTTTAATATA
66 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
* *
98170763 AGTGCCACTACTGGTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
131 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
* * *
98170821 GCGACGCTTTACAATAAGCGCC
1 GCGGCGTTTTCCAATAAGCGCC
98170843 GCTACTACTA
Statistics
Matches: 198, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
188 198 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (188 bp):
GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
Found at i:98170883 original size:113 final size:114
Alignment explanation
Indices: 98170633--98171058 Score: 464
Period size: 114 Copynumber: 3.7 Consensus size: 114
98170623 TTAATATTTT
* ** *
98170633 GCGGCGTTTTCCA-ATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCGTTTT-AATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGT
* * * *
98170697 TAAGAAATCTTGCGGCGCTTTTCACTACTCGCTGCTAATACTATTCTTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
** * * ** *
98170747 GTAGCGTTTTAATATAAGTGCCACTACTGGTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGT
1 GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAA-CGCTGCGTTTTGGT
* * * * ** * * *
98170812 T-A-ATATTTTGCGACGCTTTACAATAAGCGCCGCTACTACTATGCGTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
* * *
98170860 GCGGCGTTTTTAA-ATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCG-TTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGT
*
98170924 TAAGAAATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
* ** * *
98170974 GCGGCGTTTGAATATAAGCGCCACTAAGGCTACTATACATCAAGACCAAAGCGCTGCGTTTTGGA
1 GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAA-CGCTGCGTTTTGGT
** *
98171039 TAAGAGCTTTTGCGGCGCTT
65 TAAGAAATATTGCGGCGCTT
98171059 GGTAGTAAAC
Statistics
Matches: 252, Mismatches: 53, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
112 14 0.06
113 76 0.30
114 119 0.47
115 43 0.17
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (114 bp):
GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGTT
AAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
Found at i:98181860 original size:21 final size:21
Alignment explanation
Indices: 98181831--98181875 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
98181821 TAAATTGCAA
*
98181831 TTATTTAAAGGGCCAAAACGG
1 TTATCTAAAGGGCCAAAACGG
*
98181852 TTATCTAAAGGGCCAAAATGG
1 TTATCTAAAGGGCCAAAACGG
98181873 TTA
1 TTA
98181876 ATAAACCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (21 bp):
TTATCTAAAGGGCCAAAACGG
Found at i:98183231 original size:14 final size:13
Alignment explanation
Indices: 98183212--98183248 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
98183202 TTTTAATTTC
98183212 AATTATATTAGGAT
1 AATTAT-TTAGGAT
*
98183226 AATTATTAAGGAT
1 AATTATTTAGGAT
98183239 AATTATTTAG
1 AATTATTTAG
98183249 ATTTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (13 bp):
AATTATTTAGGAT
Found at i:98186232 original size:24 final size:24
Alignment explanation
Indices: 98186205--98186267 Score: 108
Period size: 24 Copynumber: 2.6 Consensus size: 24
98186195 ATTTCAATTT
98186205 ATCAACCTAAAGTCAATTGTATTA
1 ATCAACCTAAAGTCAATTGTATTA
* *
98186229 ATCAACTTAAAGTCATTTGTATTA
1 ATCAACCTAAAGTCAATTGTATTA
98186253 ATCAACCTAAAGTCA
1 ATCAACCTAAAGTCA
98186268 GCTGTTCTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.33
Consensus pattern (24 bp):
ATCAACCTAAAGTCAATTGTATTA
Found at i:98188866 original size:23 final size:23
Alignment explanation
Indices: 98188840--98188937 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
98188830 ATAAGTGCCA
98188840 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
98188863 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
98188886 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
98188908 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
98188931 CACTGAT
1 CACTGAT
98188938 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:98188905 original size:45 final size:45
Alignment explanation
Indices: 98188847--98188935 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
98188837 CCACACTGAT
* *
98188847 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
98188892 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
98188936 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:98208721 original size:22 final size:22
Alignment explanation
Indices: 98208677--98208722 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
98208667 TTAATCATTA
* **
98208677 TTATTCAGTATCAGTCATTTAT
1 TTATTCAGTAACAGTCAAATAT
98208699 TTATTCAGTAACAGTCAAATAT
1 TTATTCAGTAACAGTCAAATAT
98208721 TT
1 TT
98208723 GGTAGCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.46
Consensus pattern (22 bp):
TTATTCAGTAACAGTCAAATAT
Found at i:98209189 original size:30 final size:30
Alignment explanation
Indices: 98209155--98209214 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
98209145 TTTGATTTAT
98209155 TTCAATAATCATAAAACACAAAAATGCTTA
1 TTCAATAATCATAAAACACAAAAATGCTTA
*
98209185 TTCAATAATCATAAAACACAAAAGTGCTTA
1 TTCAATAATCATAAAACACAAAAATGCTTA
98209215 CCTTAATTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.52, C:0.17, G:0.05, T:0.27
Consensus pattern (30 bp):
TTCAATAATCATAAAACACAAAAATGCTTA
Found at i:98209484 original size:17 final size:17
Alignment explanation
Indices: 98209462--98209494 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
98209452 AATTTTCTCT
*
98209462 TTTCTTCTTTTCTTTTC
1 TTTCTTCCTTTCTTTTC
98209479 TTTCTTCCTTTCTTTT
1 TTTCTTCCTTTCTTTT
98209495 TCTCCCTTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCTTCCTTTCTTTTC
Found at i:98217725 original size:26 final size:26
Alignment explanation
Indices: 98217689--98217798 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
98217679 TGATACAAAT
98217689 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
98217715 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
98217741 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
98217767 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
98217793 TGATAA
1 TGATAA
98217799 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:98219273 original size:28 final size:26
Alignment explanation
Indices: 98219231--98219305 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
98219221 AAAAGTAGCT
* *
98219231 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGGA
* *
98219259 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGGA
*
98219285 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
98219306 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGGA
Found at i:98219450 original size:27 final size:27
Alignment explanation
Indices: 98219409--98219547 Score: 172
Period size: 27 Copynumber: 5.1 Consensus size: 27
98219399 GAGGAAGCGT
*
98219409 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
98219436 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
98219463 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
98219490 TCTGGTGGCCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
98219518 TCTGGTGACTCTGTCA-AATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
98219544 TCTG
1 TCTG
98219548 ACAGCCATGC
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.04
27 81 0.83
28 13 0.13
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:98223191 original size:18 final size:17
Alignment explanation
Indices: 98223158--98223196 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
98223148 TTGTATAAAT
98223158 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
98223176 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
98223193 TGTG
1 TGTG
98223197 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:98223449 original size:23 final size:23
Alignment explanation
Indices: 98223422--98223519 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
98223412 AGTGTTATTG
98223422 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
98223445 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
98223468 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
98223490 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
98223513 ATCAGTG
1 ATCAGTG
98223520 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:98223488 original size:45 final size:45
Alignment explanation
Indices: 98223424--98223512 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
98223414 TGTTATTGAT
* *
98223424 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
98223469 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
98223513 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:98242438 original size:16 final size:16
Alignment explanation
Indices: 98242416--98242453 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
98242406 TCGGCAAATC
*
98242416 CCGAAATGTCGAAAAG
1 CCGAAATGCCGAAAAG
*
98242432 TCGAAATGCCGAAAAG
1 CCGAAATGCCGAAAAG
98242448 CCGAAA
1 CCGAAA
98242454 GTCTGGCTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.11
Consensus pattern (16 bp):
CCGAAATGCCGAAAAG
Found at i:98242712 original size:29 final size:29
Alignment explanation
Indices: 98242680--98242754 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
98242670 AATTGATTCA
* *
98242680 GGCCGGATGGGCCATATGAATGTGATTTG
1 GGCCGAATGGGCCATATGAATGAGATTTG
*
98242709 GGCCTAATGGGCCATATGAATGAGA-TTG
1 GGCCGAATGGGCCATATGAATGAGATTTG
* * *
98242737 AGCCTAGTGGGCCATATG
1 GGCCGAATGGGCCATATG
98242755 CATGTAAGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 19 0.46
29 22 0.54
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (29 bp):
GGCCGAATGGGCCATATGAATGAGATTTG
Found at i:98242750 original size:28 final size:29
Alignment explanation
Indices: 98242686--98242754 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
98242676 TTCAGGCCGG
* *
98242686 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGAGCCTA
98242715 ATGGGCCATATGAATGAGA-TTGAGCCTA
1 ATGGGCCATATGAATGAGATTTGAGCCTA
*
98242743 GTGGGCCATATG
1 ATGGGCCATATG
98242755 CATGTAAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGAGCCTA
Found at i:98248127 original size:16 final size:16
Alignment explanation
Indices: 98248106--98248139 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
98248096 AACCTTCAAC
98248106 ATAGGATATATTGCCG
1 ATAGGATATATTGCCG
98248122 ATAGGATATATTGCCG
1 ATAGGATATATTGCCG
98248138 AT
1 AT
98248140 GCCATGTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (16 bp):
ATAGGATATATTGCCG
Done.