Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 30 of 316
Found at i:8655123 original size:175 final size:176
Alignment explanation
Indices: 8654825--8655312 Score: 719
Period size: 175 Copynumber: 2.8 Consensus size: 176
8654815 ATTGAAGGCA
* * *
8654825 AATCTTATCTCCATGTATCGGCAATGGAGAAGATTTAAGCC-CTAAAGCCTTATTTCTCTGAGGT
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCACT--AGCCTTATCTCTCTGAGGT
*
8654889 AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
63 AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAA
* * *
8654954 CTGAAGATCTTATCTCCTTAAACAGTAGCGGAACATATCAAAGATGGCG
128 TTGAAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCG
*
8655003 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCTTTGAGGTAGC
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGC
* ** *
8655068 AAGAAAGCAGGTTGAAGAACG-AGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAAATTG
66 AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTG
* * * * * *
8655132 AAGATTTTATATCTTTAAACAGTAGGGGAGCAGATCGAAGATGGTG
131 AAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCG
* * * *
8655178 AATCTTATCTCCATATATCGGCAATGGAGCTGATTTTACCACCAACCTTATCTCTCTGAGGTAGC
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGC
* *
8655243 AAGAGAGCAGGTTGAAGATTGAAGTCTTACCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTG
66 AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTG
8655308 AAGAT
131 AAGAT
8655313 TGTAAAAGGC
Statistics
Matches: 279, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
175 156 0.56
176 83 0.30
177 2 0.01
178 38 0.14
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (176 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGC
AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTG
AAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCG
Found at i:8655444 original size:147 final size:147
Alignment explanation
Indices: 8655178--8655604 Score: 621
Period size: 147 Copynumber: 2.9 Consensus size: 147
8655168 GAAGATGGTG
* *
8655178 AATCTTATCTCCATATATCGGCAATGGAGCTGATTTTA-CCACCAA-CCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCC-CCAAGCCTTATCTCTCTGAGGTA
** * *
8655241 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTACCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAAT
65 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAAGAT
*
8655306 TGAAGATTGTAAA-AGGCA
130 TGAAGA-TGGAAAGAGGCA
8655324 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
* * *
8655389 CAAGAAAACAGGTTGAAAATTGAAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
*
8655454 GAAGATGGAAAGAGGCG
131 GAAGATGGAAAGAGGCA
* * * *
8655471 AATCTTATCTCCATATACCGACAATGGAGCAGGTTTAAGCCTCAAGGCCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAA-GCCTTATCTCTCTGAGGTA
* * *
8655536 GCAAGAGAGTAGGTTGAAGATTG-AGTCTTATCTTT-CTGAGGTAGTAAGAAAGCAGACTGAAGA
65 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTAT-TTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
8655599 TTGAAG
129 TTGAAG
8655605 GTCATATCTC
Statistics
Matches: 255, Mismatches: 21, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
146 45 0.18
147 169 0.66
148 41 0.16
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (147 bp):
AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
GAAGATGGAAAGAGGCA
Found at i:8655574 original size:43 final size:43
Alignment explanation
Indices: 8655519--8655602 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
8655509 GCCTCAAGGC
* * **
8655519 CTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGT
* *
8655562 CTTATCTTTCTGAGGTAGTAAGAAAGCAGACTGAAGATTGA
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
8655603 AGGTCATATC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGT
Found at i:8655768 original size:177 final size:175
Alignment explanation
Indices: 8655463--8655870 Score: 489
Period size: 177 Copynumber: 2.3 Consensus size: 175
8655453 TGAAGATGGA
* * * *
8655463 AAGA-GGCGAATCTTATCTCCATATACCGACAATGGAGCAGGTTTAAGCCTCAAGGCCTTATCTC
1 AAGATGGCGAATCTTATCTCCATGTACCG-CAATGGAGCAGATTTAAGCCACTA-GCCTTATCTC
* * *
8655527 TCTGAGGTAGCAAGAGAGTAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGTAAGAAAGCAGA
64 TCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGA
** * *
8655592 CTGAAGATTGAAGGTCATATCTCCCT-AAGCAGTAGTGGAGCAGATCG
129 CTGAAGATTGAAAATC-TATCTCCCTAAAGCAGTAGCGGAGCAAATCG
* *
8655639 AAGATGGCAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCT
1 AAGATGGCGAATCTTATCTCCATGTACC-GCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCT
** *
8655704 CTGAGGTAGCAAGAGAGCAGGTTGGCGATTTTG-GTCTTATCTTCCTGAGGTAGCAAGGAAGCAG
65 CTGAGGTAGCAAGAGAGCAGGTTGAAGA--TTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAG
* * *
8655768 ACTGAAGATTGAAAATCTATTTCCCTAAAGCAGTTGCGGAGCAAATTG
128 ACTGAAGATTGAAAATCTATCTCCCTAAAGCAGTAGCGGAGCAAATCG
* * * * * * * *
8655816 AGGATGACGAATCTTGTCTCTATGTATCGGTAATAGAGCAGATTTAAGTCACTAG
1 AAGATGGCGAATCTTATCTCCATGTA-CCGCAATGGAGCAGATTTAAGCCACTAG
8655871 TCCTATTTCC
Statistics
Matches: 197, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
176 48 0.24
177 144 0.73
178 5 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (175 bp):
AAGATGGCGAATCTTATCTCCATGTACCGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCTC
TGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACT
GAAGATTGAAAATCTATCTCCCTAAAGCAGTAGCGGAGCAAATCG
Found at i:8662186 original size:21 final size:21
Alignment explanation
Indices: 8662161--8662229 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
8662151 AACCCCATTT
8662161 TTATTTTATTTTACTTTATTA
1 TTATTTTATTTTACTTTATTA
*
8662182 TTA--TTATTTT--TATATTA
1 TTATTTTATTTTACTTTATTA
* *
8662199 TTTATTATTATTTTACTATTTTTT
1 -TTATT-TTATTTTACT-TTATTA
8662223 TTATTTT
1 TTATTTT
8662230 TTATTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
17 6 0.16
18 3 0.08
19 7 0.19
21 10 0.27
22 2 0.05
23 6 0.16
24 3 0.08
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (21 bp):
TTATTTTATTTTACTTTATTA
Found at i:8662190 original size:24 final size:24
Alignment explanation
Indices: 8662164--8662210 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
8662154 CCCATTTTTA
*
8662164 TTTTATTTTACTTTATTATTATTAT
1 TTTTATATTA-TTTATTATTATTAT
8662189 TTTTATATTATTTATTATTATT
1 TTTTATATTATTTATTATTATT
8662211 TTACTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTATATTATTTATTATTATTAT
Found at i:8662226 original size:27 final size:27
Alignment explanation
Indices: 8662157--8662241 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
8662147 AAGCAACCCC
8662157 ATTTT-TATTTTATTTTACTTTATTATT
1 ATTTTATATTTTATTTTA-TTTATTATT
*
8662184 A--TTAT-TTTTATATTATTTATTATT
1 ATTTTATATTTTATTTTATTTATTATT
*
8662208 ATTTTACTATTTT-TTTTATTTTTTATT
1 ATTTTA-TATTTTATTTTATTTATTATT
*
8662235 TTTTTAT
1 ATTTTAT
8662242 TCTTATGCTT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
24 10 0.20
25 11 0.22
26 5 0.10
27 19 0.39
28 4 0.08
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.75
Consensus pattern (27 bp):
ATTTTATATTTTATTTTATTTATTATT
Found at i:8662232 original size:59 final size:55
Alignment explanation
Indices: 8662169--8662279 Score: 123
Period size: 59 Copynumber: 1.9 Consensus size: 55
8662159 TTTTATTTTA
** * *
8662169 TTTTACTTTATTATTATTATTTTTATATTATTTATTATTATTTTACTATTTTTTTTATT
1 TTTTACTTTATTATTATTATGCTTATATT-TTAAAT-TTATTTTA--ATTTTTTTTATT
* * *
8662228 TTTTATTTTTTTATTCTTATGCTTATATTTTAAATTTATTTTAATTTTTTTT
1 TTTTACTTTATTATTATTATGCTTATATTTTAAATTTATTTTAATTTTTTTT
8662280 GCTATATCTA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
55 9 0.20
57 8 0.18
58 4 0.09
59 24 0.53
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.73
Consensus pattern (55 bp):
TTTTACTTTATTATTATTATGCTTATATTTTAAATTTATTTTAATTTTTTTTATT
Found at i:8663411 original size:23 final size:23
Alignment explanation
Indices: 8663381--8663425 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8663371 TTATTGTTCA
*
8663381 AAAAAAAATAAAATCAAAAAATC
1 AAAAAAAATAAAATAAAAAAATC
*
8663404 AAAAAAAATATAATAAAAAAAT
1 AAAAAAAATAAAATAAAAAAAT
8663426 ATTGATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (23 bp):
AAAAAAAATAAAATAAAAAAATC
Found at i:8665133 original size:14 final size:14
Alignment explanation
Indices: 8665114--8665143 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8665104 ATTGCGTTCA
*
8665114 TAGTTATATTAGAT
1 TAGTTAAATTAGAT
8665128 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
8665142 TA
1 TA
8665144 AAAACAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:8666827 original size:27 final size:27
Alignment explanation
Indices: 8666784--8666847 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
8666774 TTTAATCGTA
8666784 TTTA-AATTATACCTATAA-CATTAAT
1 TTTATAATTATACCTATAAGCATTAAT
* *
8666809 TTTATAATTTTACTCTATAAGCATTTAT
1 TTTATAATTATAC-CTATAAGCATTAAT
8666837 TTTACTAATTA
1 TTTA-TAATTA
8666848 AAATTAACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 4 0.12
26 7 0.22
27 6 0.19
28 10 0.31
29 5 0.16
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.50
Consensus pattern (27 bp):
TTTATAATTATACCTATAAGCATTAAT
Found at i:8668233 original size:23 final size:22
Alignment explanation
Indices: 8668186--8668233 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
8668176 CAATTTAATC
8668186 CTAACTAAATTCACTTACTTTT
1 CTAACTAAATTCACTTACTTTT
*
8668208 CTAACTCAATTCATACTT-CTTTT
1 CTAACTAAATTC--ACTTACTTTT
8668231 CTA
1 CTA
8668234 CTTAATTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 11 0.48
23 8 0.35
24 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.46
Consensus pattern (22 bp):
CTAACTAAATTCACTTACTTTT
Found at i:8670917 original size:21 final size:20
Alignment explanation
Indices: 8670885--8670923 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8670875 AGCATTGAAT
*
8670885 TTGGTAATGATGATGAGGAG
1 TTGGTAATGATGAAGAGGAG
8670905 TTGGTATATGATGAAGAGG
1 TTGGTA-ATGATGAAGAGG
8670924 GTAATGATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (20 bp):
TTGGTAATGATGAAGAGGAG
Found at i:8678063 original size:22 final size:22
Alignment explanation
Indices: 8678038--8678080 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8678028 TAATTAAGAA
*
8678038 ACTTTAATTCATTCAATGTAAT
1 ACTTTAATTAATTCAATGTAAT
* *
8678060 ACTTTTATTAATTGAATGTAA
1 ACTTTAATTAATTCAATGTAA
8678081 AGGAGCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (22 bp):
ACTTTAATTAATTCAATGTAAT
Found at i:8681082 original size:131 final size:130
Alignment explanation
Indices: 8680872--8681260 Score: 562
Period size: 131 Copynumber: 3.0 Consensus size: 130
8680862 TAATTATTCA
* * * *
8680872 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATCCGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAATCGGGGAATCGTGCCCTATCG
* ** * *
8680937 TGCTGGGTCGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTCTGGAATTTCACTCATATC
66 TGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATATC
** * *
8681002 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTCAGCAAGTCGGGGAATCGTGCCTTATC
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAA-TCGGGGAATCGTGCCCTATC
* * * *
8681067 GTGCTGGGTTGCGATTTCCTATTTATTCAAAATAATCGAATAGTCCTTTGGAATGTCACTCATGT
65 GTGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATAT
8681132 C
130 C
* *
8681133 TTAAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAA-TCGGGGAATCGTGCCCTATC
* * *
8681198 GTGCTGGGTTGCGATTTCCTATTTGTTCGAAATAACCGAATATTCCTTTAGAATTTCACTCAT
65 GTGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCAT
8681261 GTTCTCTAAA
Statistics
Matches: 228, Mismatches: 30, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
130 38 0.17
131 190 0.83
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (130 bp):
TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAATCGGGGAATCGTGCCCTATCG
TGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATATC
Found at i:8692053 original size:18 final size:17
Alignment explanation
Indices: 8692025--8692059 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8692015 ATTATTAAGA
*
8692025 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8692042 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8692060 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8692197 original size:18 final size:17
Alignment explanation
Indices: 8692169--8692203 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8692159 ATTATTAACC
*
8692169 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8692186 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8692204 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8692414 original size:44 final size:45
Alignment explanation
Indices: 8692365--8692459 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
8692355 TTACACCTCT
* *
8692365 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
8692409 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
8692454 ATTACA
1 ATTACA
8692460 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:8692459 original size:16 final size:16
Alignment explanation
Indices: 8692438--8692470 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8692428 TTGATTTGCT
*
8692438 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
8692454 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
8692470 A
1 A
8692471 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:8692480 original size:21 final size:21
Alignment explanation
Indices: 8692451--8692493 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8692441 ACACCTCTAT
*
8692451 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
8692472 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
8692493 T
1 T
8692494 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:8693508 original size:19 final size:21
Alignment explanation
Indices: 8693481--8693520 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8693471 TTATTCCCAA
*
8693481 AAACTTTTTA-TTTTCCCCCT
1 AAACTTTTTACTTTTCACCCT
8693501 AAAC-TTTTACTTTTCACCCT
1 AAACTTTTTACTTTTCACCCT
8693521 TTACTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (21 bp):
AAACTTTTTACTTTTCACCCT
Found at i:8693780 original size:86 final size:86
Alignment explanation
Indices: 8693685--8693858 Score: 321
Period size: 86 Copynumber: 2.0 Consensus size: 86
8693675 ATTAAAATTG
*
8693685 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATCAATTTCACATTTTA
1 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
8693750 TCTTTAAAATAAATTTTATTA
66 TCTTTAAAATAAATTTTATTA
*
8693771 AATTATTAATTATGCTATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
1 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
*
8693836 TCTTTAAAATAACTTTTATTA
66 TCTTTAAAATAAATTTTATTA
8693857 AA
1 AA
8693859 AAATCACATT
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (86 bp):
AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
TCTTTAAAATAAATTTTATTA
Found at i:8698136 original size:16 final size:16
Alignment explanation
Indices: 8698099--8698140 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
8698089 AAGACTTGTT
*
8698099 TTTTATT-TTAATTTA
1 TTTTATTATTTATTTA
* *
8698114 ATGTATTATTTATTTA
1 TTTTATTATTTATTTA
8698130 TTTTATTATTT
1 TTTTATTATTT
8698141 TTCACATGTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTATTATTTATTTA
Found at i:8698696 original size:8 final size:9
Alignment explanation
Indices: 8698667--8698699 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
8698657 TTTAAACGGA
8698667 TTTAAATAT
1 TTTAAATAT
8698676 TTTAAATAT
1 TTTAAATAT
8698685 TTTAAATA-
1 TTTAAATAT
8698693 TTTAAAT
1 TTTAAAT
8698700 TTAAATCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
TTTAAATAT
Found at i:8699790 original size:7 final size:8
Alignment explanation
Indices: 8699774--8699798 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8699764 GGAAAGAGAT
8699774 AAAATAAA
1 AAAATAAA
8699782 AAAATAAA
1 AAAATAAA
8699790 AAAATAAA
1 AAAATAAA
8699798 A
1 A
8699799 GATGAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:8700046 original size:15 final size:16
Alignment explanation
Indices: 8700026--8700055 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8700016 ATCAATCTAA
8700026 AATATTTTA-TAAATT
1 AATATTTTATTAAATT
8700041 AATATTTTATTAAAT
1 AATATTTTATTAAAT
8700056 GAATGAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATATTTTATTAAATT
Found at i:8711592 original size:40 final size:40
Alignment explanation
Indices: 8711537--8711619 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
8711527 GGACACTATC
8711537 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
1 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
8711577 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
1 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
8711617 ATC
1 ATC
8711620 CTATGCTATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (40 bp):
ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
Found at i:8711931 original size:21 final size:21
Alignment explanation
Indices: 8711902--8711941 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8711892 GAAGAATTGC
* *
8711902 ATTCGGAATCAAAGTCAGACT
1 ATTCAGAATCAAAGGCAGACT
*
8711923 ATTCAGAATCCAAGGCAGA
1 ATTCAGAATCAAAGGCAGA
8711942 AGCAACGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (21 bp):
ATTCAGAATCAAAGGCAGACT
Found at i:8712718 original size:22 final size:23
Alignment explanation
Indices: 8712674--8712718 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
8712664 TTTATACTTT
* *
8712674 TATTTTTAGAAATTTAATCATTC
1 TATTTTTACAAATTTAATAATTC
*
8712697 TATTTTT-CAAATTTCATAATTC
1 TATTTTTACAAATTTAATAATTC
8712719 AAATTCAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.53
Consensus pattern (23 bp):
TATTTTTACAAATTTAATAATTC
Found at i:8713503 original size:11 final size:11
Alignment explanation
Indices: 8713489--8713532 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
8713479 AATTTTCTTT
*
8713489 ATTTTTTTAGA
1 ATTTTTTTAAA
8713500 ATTTTTTTAAA
1 ATTTTTTTAAA
8713511 A--TTTTTAAA
1 ATTTTTTTAAA
*
8713520 ATTTTTTAAAA
1 ATTTTTTTAAA
8713531 AT
1 AT
8713533 ATAAAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 9 0.31
11 20 0.69
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (11 bp):
ATTTTTTTAAA
Found at i:8713515 original size:20 final size:20
Alignment explanation
Indices: 8713492--8713532 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8713482 TTTCTTTATT
* *
8713492 TTTTTAGAATTTTTTTAAAA
1 TTTTTAAAATTTTTTAAAAA
8713512 TTTTTAAAATTTTTTAAAAA
1 TTTTTAAAATTTTTTAAAAA
8713532 T
1 T
8713533 ATAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTTTAAAATTTTTTAAAAA
Found at i:8713530 original size:10 final size:10
Alignment explanation
Indices: 8713491--8713530 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
8713481 TTTTCTTTAT
*
8713491 TTTTTTAGAAT
1 TTTTTTA-AAA
8713502 TTTTTTAAAA
1 TTTTTTAAAA
8713512 -TTTTTAAAA
1 TTTTTTAAAA
8713521 TTTTTTAAAA
1 TTTTTTAAAA
8713531 ATATAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 9 0.33
10 11 0.41
11 7 0.26
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:8713537 original size:18 final size:19
Alignment explanation
Indices: 8713502--8713541 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8713492 TTTTTAGAAT
* *
8713502 TTTTTTAAAATTTTTAAAA
1 TTTTTTAAAATATATAAAA
8713521 TTTTTTAAAA-ATATAAAA
1 TTTTTTAAAATATATAAAA
8713539 TTT
1 TTT
8713542 AGAATTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTTTAAAATATATAAAA
Found at i:8717311 original size:38 final size:38
Alignment explanation
Indices: 8717269--8717346 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
8717259 TTGGAATAAT
8717269 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
1 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
* *
8717307 TTGAGTTTAAATCATCATTGTATCCTAAAAAATAGCAC
1 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
8717345 TT
1 TT
8717347 ATGGTATGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (38 bp):
TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
Found at i:8717804 original size:29 final size:28
Alignment explanation
Indices: 8717733--8717808 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 28
8717723 ATTGTATTTT
*
8717733 ATTTTTTTATTTAAAAAAAAGGTAAATTA
1 ATTTTTCTA-TTAAAAAAAAGGTAAATTA
8717762 ATCTTTGTAC-ATTAAAAAAAA-GTACAAATTA
1 AT-TTT-T-CTATTAAAAAAAAGGT--AAATTA
8717793 ATTTTTCTATTAAAAA
1 ATTTTTCTATTAAAAA
8717809 TTTCATCTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
28 1 0.03
29 13 0.32
30 16 0.40
31 10 0.25
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (28 bp):
ATTTTTCTATTAAAAAAAAGGTAAATTA
Found at i:8718621 original size:32 final size:32
Alignment explanation
Indices: 8718585--8718647 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
8718575 TTAATCATTA
8718585 TTTATAAACTATTATAATT-CTTAATAATTTTT
1 TTTAT-AACTATTATAATTACTTAATAATTTTT
* * *
8718617 TTTATAATTTTTATAATTATTTAATAATTTT
1 TTTATAACTATTATAATTACTTAATAATTTT
8718648 GAGAAACTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (32 bp):
TTTATAACTATTATAATTACTTAATAATTTTT
Found at i:8718722 original size:10 final size:10
Alignment explanation
Indices: 8718707--8718758 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
8718697 AAAAACATTG
8718707 TTTTTAATAA
1 TTTTTAATAA
*
8718717 TTTTTAGT-A
1 TTTTTAATAA
**
8718726 TTTTTTTTAA
1 TTTTTAATAA
8718736 TTTTT-ATAA
1 TTTTTAATAA
*
8718745 TTCTTAATAA
1 TTTTTAATAA
8718755 TTTT
1 TTTT
8718759 AAACAGTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 14 0.41
10 20 0.59
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:8718755 original size:19 final size:19
Alignment explanation
Indices: 8718710--8718758 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
8718700 AACATTGTTT
*
8718710 TTAATAATTTTTAGTATTT
1 TTAATAATTTTTAGTATTC
**
8718729 TTTTTAATTTTTA-TAATTC
1 TTAATAATTTTTAGT-ATTC
8718748 TTAATAATTTT
1 TTAATAATTTT
8718759 AAACAGTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
TTAATAATTTTTAGTATTC
Found at i:8720500 original size:17 final size:18
Alignment explanation
Indices: 8720466--8720504 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8720456 GCTAGCATTT
*
8720466 AATATATAAATAATATAA
1 AATATAAAAATAATATAA
8720484 AATATAAAAAT-ATATAA
1 AATATAAAAATAATATAA
8720501 AATA
1 AATA
8720505 ATGTAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATAAAAATAATATAA
Found at i:8720779 original size:5 final size:5
Alignment explanation
Indices: 8720765--8720836 Score: 55
Period size: 5 Copynumber: 15.0 Consensus size: 5
8720755 ATACATCTAC
* * * *
8720765 AATAT AATAT CATAT AATAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
8720813 AATA- AATAAT AATA- AATAT AATAT
1 AATAT AAT-AT AATAT AATAT AATAT
8720837 GATGGATAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
3 2 0.04
4 10 0.19
5 37 0.69
6 5 0.09
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:8722930 original size:206 final size:206
Alignment explanation
Indices: 8722557--8723310 Score: 1226
Period size: 206 Copynumber: 3.7 Consensus size: 206
8722547 AAATCTGCTT
* * * * *
8722557 CTTCGATTTGTTTTCTGACAATACAGAGATACCAAATCATCTTAGATTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
8722622 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
* * ** *
8722687 GGATCTACTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATA
131 AGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATATA
*
8722752 GAGACACCAAA
196 GAGACGCCAAA
* *
8722763 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCACCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
8722828 GTAAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
8722892 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATAT
130 TAGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATAT
8722957 AGAGACGCCAAA
195 AGAGACGCCAAA
*
8722969 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
8723034 GTGAAAGTCAAATCATCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
8723098 TAGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTTTCCGTCGAATAT
130 TAGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATAT
8723163 AGAGACGCCAAA
195 AGAGACGCCAAA
* * *
8723175 CTTCTATTTATTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
8723240 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA-CTATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATC-ATCT
*
8723304 TGGATCT
130 TAGATCT
8723311 TGCTTCAGCC
Statistics
Matches: 513, Mismatches: 32, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
205 3 0.01
206 508 0.99
207 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
AGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATATA
GAGACGCCAAA
Found at i:8735160 original size:4 final size:4
Alignment explanation
Indices: 8735131--8735305 Score: 71
Period size: 4 Copynumber: 44.5 Consensus size: 4
8735121 TACAATTTTA
* * * * * * *
8735131 AAAT ACAT AAAT ATAT ATAA- AGAT AAAT AAAT AAAA AAAA AAAA AAAA
1 AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * * * * *
8735179 AAAA AAAA AAAA AAAA AAAA AAAA AAAA AAAT -AAT AAA- AAAA AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
8735225 AAA- ATAAT TAAT AAAT AAAT -AAT ACAAT ATAA- AAAT AAAT AAA- AAAT
1 AAAT A-AAT AAAT AAAT AAAT AAAT A-AAT A-AAT AAAT AAAT AAAT AAAT
* *
8735272 TAAT ACAAT AAA- AAAA AAAT AAAT ATAA- AAAT AA
1 AAAT A-AAT AAAT AAAT AAAT AAAT A-AAT AAAT AA
8735306 TATCATATAA
Statistics
Matches: 142, Mismatches: 15, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
3 21 0.15
4 108 0.76
5 13 0.09
ACGTcount: A:0.80, C:0.02, G:0.01, T:0.18
Consensus pattern (4 bp):
AAAT
Found at i:8735169 original size:1 final size:1
Alignment explanation
Indices: 8735163--8735228 Score: 105
Period size: 1 Copynumber: 66.0 Consensus size: 1
8735153 ATAAATAAAT
* * *
8735163 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAAAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8735228 A
1 A
8735229 TAATTAATAA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 59 1.00
ACGTcount: A:0.95, C:0.00, G:0.00, T:0.05
Consensus pattern (1 bp):
A
Found at i:8735230 original size:16 final size:16
Alignment explanation
Indices: 8735159--8735302 Score: 116
Period size: 16 Copynumber: 8.9 Consensus size: 16
8735149 AAAGATAAAT
8735159 AAATAAAA-AAAAAAA
1 AAATAAAATAAAAAAA
8735174 AAA-AAAA-AAAAAAA
1 AAATAAAATAAAAAAA
* *
8735188 AAAAAAAAAAAAAAAA
1 AAATAAAATAAAAAAA
*
8735204 AAAAAATAATAAAAAAA
1 AAATAA-AATAAAAAAA
8735221 AAATAAAATAATTAATAAA
1 AAATAAAATAA--AA-AAA
* * * *
8735240 TAAATAATACAATATAA
1 -AAATAAAATAAAAAAA
*
8735257 AAAT-AAATAAAAAAT
1 AAATAAAATAAAAAAA
* *
8735272 TAATACAATAAAAAAA
1 AAATAAAATAAAAAAA
8735288 AAATAAATATAAAAA
1 AAATAAA-ATAAAAA
8735303 TAATATCATA
Statistics
Matches: 104, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
14 14 0.13
15 16 0.15
16 36 0.35
17 23 0.22
18 3 0.03
19 3 0.03
20 9 0.09
ACGTcount: A:0.83, C:0.01, G:0.00, T:0.15
Consensus pattern (16 bp):
AAATAAAATAAAAAAA
Found at i:8735237 original size:12 final size:12
Alignment explanation
Indices: 8735155--8735352 Score: 77
Period size: 12 Copynumber: 16.3 Consensus size: 12
8735145 ATATAAAGAT
*
8735155 AAATAAATAAAA
1 AAATAAATAATA
* * *
8735167 AAAAAAAAAAAA
1 AAATAAATAATA
* * *
8735179 AAAAAAAAAAAA
1 AAATAAATAATA
* * *
8735191 AAAAAAAAAAAA
1 AAATAAATAATA
*
8735203 AAAAAAATAATA
1 AAATAAATAATA
*
8735215 AAA-AAAAAATA
1 AAATAAATAATA
*
8735226 AAATAATTAAT-
1 AAATAAATAATA
8735237 AAATAAATAATA
1 AAATAAATAATA
8735249 CAATATAAAAATAAATA
1 -AA-AT--AAAT-AATA
*
8735266 AAA-AATTAATA
1 AAATAAATAATA
* *
8735277 CAATAAA-AAAA
1 AAATAAATAATA
8735288 AAATAAAT-ATAA
1 AAATAAATAAT-A
*
8735300 AAATAATATCATA
1 AAATAA-ATAATA
* *
8735313 TAATATATAA-A
1 AAATAAATAATA
*
8735324 AATATAAA-ATATT
1 AA-ATAAATA-ATA
*
8735337 AAATAAATATTA
1 AAATAAATAATA
8735349 AAAT
1 AAAT
8735353 TAAAANNNNN
Statistics
Matches: 148, Mismatches: 22, Indels: 32
0.73 0.11 0.16
Matches are distributed among these distances:
11 39 0.26
12 82 0.55
13 12 0.08
14 4 0.03
15 1 0.01
16 6 0.04
17 4 0.03
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.21
Consensus pattern (12 bp):
AAATAAATAATA
Found at i:8735240 original size:11 final size:11
Alignment explanation
Indices: 8735207--8735350 Score: 82
Period size: 11 Copynumber: 12.9 Consensus size: 11
8735197 AAAAAAAAAA
*
8735207 AAATAATAAAA
1 AAATAATAAAT
*
8735218 AAAAAATAAAAT
1 AAATAAT-AAAT
*
8735230 AATTAATAAAT
1 AAATAATAAAT
8735241 AAATAATACAAT
1 AAATAATA-AAT
*
8735253 ATAAAAATAAAT
1 A-AATAATAAAT
* *
8735265 AAAAAATTAAT
1 AAATAATAAAT
8735276 ACAATAA-AAA-
1 A-AATAATAAAT
8735286 AAA-AATAAAT
1 AAATAATAAAT
*
8735296 ATAAAAATAATAT
1 A-AATAATAA-AT
* *
8735309 CATATAATATAT
1 -AAATAATAAAT
*
8735321 AAA-AATATA-
1 AAATAATAAAT
*
8735330 AAATATTAAAT
1 AAATAATAAAT
*
8735341 AAATATTAAA
1 AAATAATAAA
8735351 ATTAAAANNN
Statistics
Matches: 106, Mismatches: 15, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
8 2 0.02
9 8 0.08
10 12 0.11
11 43 0.41
12 27 0.25
13 13 0.12
14 1 0.01
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (11 bp):
AAATAATAAAT
Found at i:8735244 original size:20 final size:20
Alignment explanation
Indices: 8735206--8735345 Score: 85
Period size: 20 Copynumber: 7.0 Consensus size: 20
8735196 AAAAAAAAAA
* *
8735206 AAAATAA-TAAAAAAAAAAT
1 AAAATAATTAATAAATAAAT
8735225 AAAATAATTAATAAATAAAT
1 AAAATAATTAATAAATAAAT
* *
8735245 AATACAATATAA-AAATAAAT
1 AAAATAAT-TAATAAATAAAT
8735265 AAAA-AATTAATACAATAAA-
1 AAAATAATTAATA-AATAAAT
* *
8735284 AAAAAAATAAATATAA-AAAT
1 AAAATAATTAATA-AATAAAT
* * *
8735304 AATATCATATAATATATAAA-
1 AAAATAAT-TAATAAATAAAT
* * *
8735324 AATATAAAATATTAAATAAAT
1 AAAAT-AATTAATAAATAAAT
8735345 A
1 A
8735346 TTAAAATTAA
Statistics
Matches: 95, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
18 3 0.03
19 18 0.19
20 62 0.65
21 12 0.13
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAATAATTAATAAATAAAT
Found at i:8753375 original size:17 final size:18
Alignment explanation
Indices: 8753341--8753379 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8753331 GCTAGCATTT
*
8753341 AATATATAAATAATATAA
1 AATATAAAAATAATATAA
8753359 AATATAAAAAT-ATATAA
1 AATATAAAAATAATATAA
8753376 AATA
1 AATA
8753380 ATGTAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATAAAAATAATATAA
Found at i:8753656 original size:5 final size:5
Alignment explanation
Indices: 8753642--8753703 Score: 51
Period size: 5 Copynumber: 13.0 Consensus size: 5
8753632 ATACATCTTC
* * * *
8753642 AATAT AATAT CATAT AATAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
8753690 AATA- AATAT AATAT
1 AATAT AATAT AATAT
8753704 GATGGATAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
3 2 0.04
4 7 0.15
5 35 0.76
6 2 0.04
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:8759057 original size:12 final size:12
Alignment explanation
Indices: 8759040--8759067 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8759030 AACCCAGCAT
8759040 CAACTTATCTTA
1 CAACTTATCTTA
8759052 CAACTTATCTTA
1 CAACTTATCTTA
8759064 CAAC
1 CAAC
8759068 CACCCAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (12 bp):
CAACTTATCTTA
Found at i:8760929 original size:3 final size:3
Alignment explanation
Indices: 8760921--8760950 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8760911 AAATGAGTCA
*
8760921 TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8760951 ACGGATGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:8763022 original size:53 final size:56
Alignment explanation
Indices: 8762920--8763031 Score: 135
Period size: 53 Copynumber: 2.1 Consensus size: 56
8762910 ATTAAACACG
* * *
8762920 AATTAGAAAACTTAAACTTTCTAAAAATAATTAAAATAAAAGTATATTTAGAAAA-A
1 AATTAAAAAACTTAAACTTCCTAAAAATAATTAAAATAAAACTATATTTA-AAAATA
*
8762976 AATTAAAAAAC-TAAA-TTCCTTAAAA-AATTAAAATAAAATCTA-ATTTAAAAATA
1 AATTAAAAAACTTAAACTTCCTAAAAATAATTAAAATAAAA-CTATATTTAAAAATA
8763029 AAT
1 AAT
8763032 ACTTAAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
52 4 0.08
53 22 0.44
54 10 0.20
55 4 0.08
56 10 0.20
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (56 bp):
AATTAAAAAACTTAAACTTCCTAAAAATAATTAAAATAAAACTATATTTAAAAATA
Found at i:8764912 original size:26 final size:26
Alignment explanation
Indices: 8764865--8764923 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
8764855 CTTTATACAT
* *
8764865 AATAGATTTTAAAAATTATATATAAA
1 AATAGATTTAAAAAAATATATATAAA
8764891 AATAGATTTAAAAGAAATTATATATATAA
1 AATAGATTTAAAA-AAA-TATATATA-AA
8764920 AATA
1 AATA
8764924 ACATGGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 12 0.43
27 2 0.07
28 8 0.29
29 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (26 bp):
AATAGATTTAAAAAAATATATATAAA
Found at i:8768055 original size:50 final size:50
Alignment explanation
Indices: 8767980--8768156 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
8767970 CCATGGCAAT
* *
8767980 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
8768030 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
8768080 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
8768131 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
8768157 CTGATCAATG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 95 0.81
51 23 0.19
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:8768174 original size:31 final size:31
Alignment explanation
Indices: 8768136--8768194 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
8768126 ATGGCAAGTA
*
8768136 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGACTACCTGATCAATG
8768167 AAAAGTGGTAGCTTCGACTACCTGATCA
1 AAAAGTGGTAGCTTCGACTACCTGATCA
8768195 TCAGCTACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGACTACCTGATCAATG
Found at i:8768244 original size:31 final size:31
Alignment explanation
Indices: 8768198--8768264 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
8768188 CTGATCATCA
* * *
8768198 GCTACTTGATTAGTGAAAAATGGTAGCTCCG
1 GCTACCTGATCAGTGAAAAATGATAGCTCCG
* * *
8768229 GCTACCTGATCAGTGAATAGTGATAGCTTCG
1 GCTACCTGATCAGTGAAAAATGATAGCTCCG
8768260 GCTAC
1 GCTAC
8768265 AAGTGACAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (31 bp):
GCTACCTGATCAGTGAAAAATGATAGCTCCG
Found at i:8779899 original size:46 final size:46
Alignment explanation
Indices: 8779847--8780206 Score: 497
Period size: 46 Copynumber: 7.8 Consensus size: 46
8779837 AGTGTGCTCT
*
8779847 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8779893 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8779939 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8779985 GTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
8780031 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8780077 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
8780123 ATGACGGGAAAATGAATAATACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
8780170 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC
8780207 TATGACATCA
Statistics
Matches: 292, Mismatches: 21, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 251 0.86
47 41 0.14
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8787365 original size:111 final size:111
Alignment explanation
Indices: 8787166--8787365 Score: 258
Period size: 111 Copynumber: 1.8 Consensus size: 111
8787156 AAAGTATAGA
* * * * *
8787166 TAATATTAAATTTAAATGTTTAAAAAGCAGAATAATAATAAATAAATAAATGGACAAAACAAATA
1 TAATATTAAATTTAAATATTTAAAAAGCAAAAGAATAATAAATAAATAAATAGACAAAACAAAAA
** **
8787231 ATATTGAATTTAAGTATTTAAAAAAGGTAAAAGAAAAAGAAACAAG
66 ATATAAAATTTAAGTATAAAAAAAAGGTAAAAGAAAAAGAAACAAG
* * * * *
8787277 TAATATTAAATTTAATTATTT-AAAAGTAAAAGAATAAATAAATAAATAGATAGATAAGACAAAA
1 TAATATTAAATTTAAATATTTAAAAAGCAAAAGAAT-AATAAATAAATAAATAGACAAAACAAAA
8787341 AATATAAAATTTAAGTATAAAAAAA
65 AATATAAAATTTAAGTATAAAAAAA
8787366 TAAATGAATA
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
110 11 0.15
111 63 0.85
ACGTcount: A:0.61, C:0.03, G:0.09, T:0.28
Consensus pattern (111 bp):
TAATATTAAATTTAAATATTTAAAAAGCAAAAGAATAATAAATAAATAAATAGACAAAACAAAAA
ATATAAAATTTAAGTATAAAAAAAAGGTAAAAGAAAAAGAAACAAG
Found at i:8787377 original size:63 final size:63
Alignment explanation
Indices: 8787278--8787461 Score: 181
Period size: 63 Copynumber: 2.8 Consensus size: 63
8787268 AGAAACAAGT
* * ** * *
8787278 AATATTAAATTTAATTATTTAAAAGTAAAAGAATAAATAAATAAATAGATAGATAAGACAAAA
1 AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATAAATAAATAAATAGATAAGACAAAA
* *
8787341 AATATAAAATTTAAGTATAAAAAAATAAATGAATAAATAACTAAATAAATAGATAAGACAACTAT
1 AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATAAATAAATAAATAGATAAGAC-A--A-
8787406 GAA
62 -AA
* * * *
8787409 TAATATCAAATTTAAATATTAAAAAAGGTAAAATAAT-AATAAATAAATAAATA
1 -AATATAAAATTTAAGTA-TAAAAAA-ATAAAAGAATAAATAAATAAATAAATA
8787462 AAATTCTTCA
Statistics
Matches: 99, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
63 51 0.52
64 1 0.01
66 1 0.01
68 2 0.02
69 15 0.15
70 22 0.22
71 7 0.07
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.28
Consensus pattern (63 bp):
AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATAAATAAATAAATAGATAAGACAAAA
Found at i:8788763 original size:15 final size:16
Alignment explanation
Indices: 8788743--8788787 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
8788733 GGACTATTTT
8788743 TTTTA-TTTTATTATC
1 TTTTATTTTTATTATC
*
8788758 TTTTATTTTTATTATT
1 TTTTATTTTTATTATC
8788774 TGGTTTATTTTTAT
1 T--TTTATTTTTAT
8788788 CCTGGCCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 5 0.19
16 10 0.38
18 11 0.42
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (16 bp):
TTTTATTTTTATTATC
Found at i:8789245 original size:51 final size:51
Alignment explanation
Indices: 8789177--8789403 Score: 183
Period size: 51 Copynumber: 4.6 Consensus size: 51
8789167 TTCAGTCTGC
*
8789177 TCCAC-GCAACTTCAGGGAGATAAGATTTGTAGCTTGTAGCTTTAGTCTAT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
* * * * *
8789227 TCCATTGCAACTTCAGGGAGATAAGACTTGTTA--TAGTAGA-TTTAATCCGA-
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTGTA-ACTTTAGT-CTAT
* * * * * * *
8789277 CCCACTGCAACTTCAAAGG-TATAAGACTTGTTGCTT-CAAC-CT-G--T-T
1 TCCACTGCAACTTC-AGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
*
8789322 T-CACTGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
* *
8789372 TCCACTGCAACTTCAGAGAGATAGGATTTGTA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTA
8789404 TCTTCAATCC
Statistics
Matches: 135, Mismatches: 25, Indels: 33
0.70 0.13 0.17
Matches are distributed among these distances:
43 4 0.03
44 26 0.19
45 3 0.02
46 1 0.01
47 1 0.01
49 4 0.03
50 38 0.28
51 56 0.41
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (51 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
Found at i:8789381 original size:145 final size:144
Alignment explanation
Indices: 8789020--8789394 Score: 527
Period size: 144 Copynumber: 2.6 Consensus size: 144
8789010 AATATTAGTA
* *
8789020 GCTTCAATCTGCTTT-ACCGCAACTTCAAGGAGATAAGATTTGTAACATGTAACTTTAGTCTATT
1 GCTTCAATCTG-TTTCA-CGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATT
* * * * *
8789084 CCACTGGAACTTCAGAGAGATAAGACTTGCTATGGTAGATTTAATCTGACCAACTGTAACTTCAG
64 CCACTGCAACTTCAGAGAGATAAGACTTGCTATAGTAGATTTAATCCGACCAACTGCAACTTCAA
*
8789149 AGCTATAGGACTTGCC
129 AGCTATAAGACTTGCC
* * * * *
8789165 GCTTCAGTCTGCTCCACGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAGCTTTAGTCTATTCC
1 GCTTCAATCTGTTTCACGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATTCC
* * * *
8789230 ATTGCAACTTCAGGGAGATAAGACTTGTTATAGTAGATTTAATCCGACCCACTGCAACTTCAAAG
66 ACTGCAACTTCAGAGAGATAAGACTTGCTATAGTAGATTTAATCCGACCAACTGCAACTTCAAAG
* **
8789295 GTATAAGACTTGTT
131 CTATAAGACTTGCC
*
8789309 GCTTCAACCTGTTTCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATTC
1 GCTTCAATCTGTTTCAC-GCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATTC
8789374 CACTGCAACTTCAGAGAGATA
65 CACTGCAACTTCAGAGAGATA
8789395 GGATTTGTAT
Statistics
Matches: 200, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
144 125 0.62
145 75 0.38
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (144 bp):
GCTTCAATCTGTTTCACGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATTCC
ACTGCAACTTCAGAGAGATAAGACTTGCTATAGTAGATTTAATCCGACCAACTGCAACTTCAAAG
CTATAAGACTTGCC
Found at i:8789410 original size:95 final size:95
Alignment explanation
Indices: 8789278--8789451 Score: 210
Period size: 95 Copynumber: 1.8 Consensus size: 95
8789268 TTAATCCGAC
** *
8789278 CCACTGCAACTTCAAAGGTATAAGACTTGTTGCTTCAA-CCTGTTTCACTGCAACTTCAAGGAGA
1 CCACTGCAACTTCAAAGGTATAAGACTTGTTGCTTCAATCC-ACTCCACTGCAACTTCAAGGAGA
*
8789342 TAAGATTTGTAGCTTGTAACTTTAGTCTATT
65 TAAGATTTATAGCTTGTAACTTTAGTCTATT
* * * * *
8789373 CCACTGCAACTTCAGAGAG-ATAGGATTTGTAT-CTTCAATCCACTCCACTGCAACTTTAGGGAG
1 CCACTGCAACTTCAAAG-GTATAAGACTTGT-TGCTTCAATCCACTCCACTGCAACTTCAAGGAG
*
8789436 ATGAGATTTATAGCTT
64 ATAAGATTTATAGCTT
8789452 CAACCCGTTC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
95 62 0.94
96 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (95 bp):
CCACTGCAACTTCAAAGGTATAAGACTTGTTGCTTCAATCCACTCCACTGCAACTTCAAGGAGAT
AAGATTTATAGCTTGTAACTTTAGTCTATT
Found at i:8789422 original size:44 final size:45
Alignment explanation
Indices: 8789372--8789495 Score: 146
Period size: 44 Copynumber: 2.8 Consensus size: 45
8789362 TTTAGTCTAT
* * *
8789372 TCCACTGCAACTTCAGAGAGATAG-GATTTGTATCTTCAATCCAC
1 TCCACTGCAACTTCAGAGAGATAGAGATTTATAGCTTCAACCCAC
* * **
8789416 TCCACTGCAACTTTAGGGAGAT-GAGATTTATAGCTTCAACCCGT
1 TCCACTGCAACTTCAGAGAGATAGAGATTTATAGCTTCAACCCAC
* *
8789460 TCCACTGCAAGTTCAGAGAGATA-AGGTTTATAGCTT
1 TCCACTGCAACTTCAGAGAGATAGAGATTTATAGCTT
8789496 TAATCTGCTC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.01
44 66 0.99
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
TCCACTGCAACTTCAGAGAGATAGAGATTTATAGCTTCAACCCAC
Found at i:8792662 original size:44 final size:45
Alignment explanation
Indices: 8792556--8792664 Score: 123
Period size: 44 Copynumber: 2.4 Consensus size: 45
8792546 ATGTTACAAC
* * *
8792556 TGCAACTTCAAAGAGATAAGATTTGCTAACTTCAATCTACTCCAT
1 TGCAACTTCAAGGAGATAAGACTTGCTAACTTCAACCTACTCCAT
* * * *
8792601 TGCAACTT-TAGGTAGATAAGACTTG-TGACTTCAACCTGCTCTAT
1 TGCAACTTCAAGG-AGATAAGACTTGCTAACTTCAACCTACTCCAT
*
8792645 TGTAACTTCAAGGAGATAAG
1 TGCAACTTCAAGGAGATAAG
8792665 GATTATAGCT
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
44 31 0.58
45 22 0.42
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (45 bp):
TGCAACTTCAAGGAGATAAGACTTGCTAACTTCAACCTACTCCAT
Found at i:8795983 original size:50 final size:50
Alignment explanation
Indices: 8795859--8796107 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
8795849 GATAATAACA
* * ** * *
8795859 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
8795910 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
8795960 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
8796010 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
8796065 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
8796108 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:8796037 original size:100 final size:104
Alignment explanation
Indices: 8795858--8796107 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
8795848 TGATAATAAC
**
8795858 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
8795923 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
8795960 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
8796023 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
8796065 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8796108 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:8796223 original size:13 final size:13
Alignment explanation
Indices: 8796202--8796232 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8796192 GCTTGGATCA
*
8796202 TCATCAAATAAAT
1 TCATAAAATAAAT
8796215 TCATAAAATAAAT
1 TCATAAAATAAAT
8796228 TCATA
1 TCATA
8796233 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:8796480 original size:30 final size:29
Alignment explanation
Indices: 8796445--8796501 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
8796435 CCTCGACTCT
*
8796445 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
* *
8796475 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
8796502 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.42
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:8801775 original size:16 final size:16
Alignment explanation
Indices: 8801754--8801788 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
8801744 AAGCCAAATC
8801754 ACATGGCTTAGCTTAA
1 ACATGGCTTAGCTTAA
8801770 ACATGGCTTAGCTTAA
1 ACATGGCTTAGCTTAA
8801786 ACA
1 ACA
8801789 CAAAAATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (16 bp):
ACATGGCTTAGCTTAA
Found at i:8802835 original size:45 final size:45
Alignment explanation
Indices: 8802764--8802856 Score: 107
Period size: 45 Copynumber: 2.1 Consensus size: 45
8802754 CCTGAGCTGA
* * **
8802764 TGAATAGTAAGCTCTATTGAGCTGAAACGATAAACTCTTTCGAGC
1 TGAACAGTAAGCTCTATCGAGCTGAAACGATAAACTCTCACGAGC
* * *
8802809 TGAACAGTAAGCTC-ATACGAGTTGAAACGGTAAGCTCTCACGAGC
1 TGAACAGTAAGCTCTAT-CGAGCTGAAACGATAAACTCTCACGAGC
8802854 TGA
1 TGA
8802857 TATATCGGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATCGAGCTGAAACGATAAACTCTCACGAGC
Found at i:8802845 original size:23 final size:27
Alignment explanation
Indices: 8802815--8802873 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 27
8802805 GAGCTGAACA
*
8802815 GTAAGCTCAT-ACGAGTTGA-A-A-CG
1 GTAAGCTCATCACGAGCTGATATATCG
8802838 GTAAGCTC-TCACGAGCTGATATATCG
1 GTAAGCTCATCACGAGCTGATATATCG
8802864 GTAAGCTCAT
1 GTAAGCTCAT
8802874 GTGAGCTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 1 0.03
23 16 0.53
24 1 0.03
25 1 0.03
26 10 0.33
27 1 0.03
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (27 bp):
GTAAGCTCATCACGAGCTGATATATCG
Found at i:8807566 original size:23 final size:23
Alignment explanation
Indices: 8807535--8807624 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
8807525 ATACACAAAT
* * *
8807535 TCCAACCAAACACACTAGAATGA
1 TCCATCCAAACACACCAGAATAA
* *
8807558 TCCATCCAAACACACCAAAACAA
1 TCCATCCAAACACACCAGAATAA
*
8807581 TCC-TCCCAAACACACTAGAATAA
1 TCCAT-CCAAACACACCAGAATAA
* *
8807604 TCCACCCAAACAAACCAGAAT
1 TCCATCCAAACACACCAGAAT
8807625 GGCACTAAGT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
22 1 0.02
23 53 0.98
ACGTcount: A:0.48, C:0.36, G:0.04, T:0.12
Consensus pattern (23 bp):
TCCATCCAAACACACCAGAATAA
Found at i:8808212 original size:25 final size:26
Alignment explanation
Indices: 8808178--8808226 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
8808168 CACTCTCTGT
8808178 TTCTTTTTATGCT-TTGTTT-CTTTTA
1 TTCTTTTTATG-TGTTGTTTACTTTTA
8808203 TTCTTTTTATGTGTTGTTTACTTT
1 TTCTTTTTATGTGTTGTTTACTTT
8808227 ATTAGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 1 0.05
25 17 0.77
26 4 0.18
ACGTcount: A:0.08, C:0.10, G:0.10, T:0.71
Consensus pattern (26 bp):
TTCTTTTTATGTGTTGTTTACTTTTA
Found at i:8808235 original size:25 final size:25
Alignment explanation
Indices: 8808182--8808237 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
8808172 CTCTGTTTCT
**
8808182 TTTTATGCTTTGTTTCTTTTATTCT
1 TTTTATGCTTTGTTTCTTTTATTAG
8808207 TTTTATG-TGTTGTTTAC-TTTATTAG
1 TTTTATGCT-TTGTTT-CTTTTATTAG
8808232 TTTTAT
1 TTTTAT
8808238 AATAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 25 0.93
26 1 0.04
ACGTcount: A:0.12, C:0.07, G:0.11, T:0.70
Consensus pattern (25 bp):
TTTTATGCTTTGTTTCTTTTATTAG
Found at i:8808419 original size:30 final size:28
Alignment explanation
Indices: 8808376--8808431 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
8808366 CATAATTTAG
* *
8808376 TTTATTTTTATAATATAATATTTATAATAA
1 TTTAATTTAATAATAT-AT-TTTATAATAA
8808406 TTTAATTTAATAATATATTTTATAAT
1 TTTAATTTAATAATATATTTTATAAT
8808432 TAAATCATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 14 0.58
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTAATTTAATAATATATTTTATAATAA
Found at i:8811908 original size:13 final size:14
Alignment explanation
Indices: 8811890--8811919 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
8811880 TTGTCTCTAA
8811890 CCCACCACTT-AGG
1 CCCACCACTTCAGG
8811903 CCCACCACTTCAGG
1 CCCACCACTTCAGG
8811917 CCC
1 CCC
8811920 TTCAGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.20, C:0.53, G:0.13, T:0.13
Consensus pattern (14 bp):
CCCACCACTTCAGG
Found at i:8813537 original size:24 final size:24
Alignment explanation
Indices: 8813510--8813561 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8813500 TTAGTAAGTC
*
8813510 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8813534 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8813558 AAAT
1 AAAT
8813562 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8815508 original size:24 final size:24
Alignment explanation
Indices: 8815481--8815532 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8815471 TTAGTAAGTC
*
8815481 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8815505 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8815529 AAAT
1 AAAT
8815533 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8817464 original size:28 final size:27
Alignment explanation
Indices: 8817419--8817519 Score: 85
Period size: 28 Copynumber: 3.6 Consensus size: 27
8817409 AATTTTAATT
* * *
8817419 AAAAATTTTAAATATTAAAAATTAGAA
1 AAAAATGTAAAATATTAAAAAATAGAA
* *
8817446 AAAAATGTAGAAATGTTAAAAAATATATA
1 AAAAATGTA-AAATATTAAAAAATAGA-A
* *
8817475 AAAATTGTAAAATTTTATAAAAATAGTAA
1 AAAAATGTAAAATATTA-AAAAATAG-AA
*
8817504 AAAAATTATAAAATAT
1 AAAAA-TGTAAAATAT
8817520 ATAGAAATAT
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
27 7 0.12
28 21 0.36
29 21 0.36
30 9 0.16
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (27 bp):
AAAAATGTAAAATATTAAAAAATAGAA
Found at i:8817467 original size:29 final size:29
Alignment explanation
Indices: 8817434--8817509 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 29
8817424 TTTTAAATAT
8817434 TAAAAATTAGAAAAAAATGTAGAAATGTTA
1 TAAAAATTAGAAAAAAATGTA-AAATGTTA
* * *
8817464 -AAAAATATA-TAAAAATTGTAAAATTTTA
1 TAAAAAT-TAGAAAAAAATGTAAAATGTTA
8817492 TAAAAA-TAGTAAAAAAAT
1 TAAAAATTAG-AAAAAAAT
8817510 TATAAAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
27 2 0.05
28 7 0.19
29 26 0.70
30 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (29 bp):
TAAAAATTAGAAAAAAATGTAAAATGTTA
Found at i:8817478 original size:11 final size:10
Alignment explanation
Indices: 8817464--8817530 Score: 59
Period size: 10 Copynumber: 6.9 Consensus size: 10
8817454 AGAAATGTTA
8817464 AAAAATATAT
1 AAAAATATAT
*
8817474 AAAAAT-TGT
1 AAAAATATAT
* *
8817483 AAAATTTTAT
1 AAAAATATAT
*
8817493 AAAAATAGTAA
1 AAAAATA-TAT
8817504 AAAAAT-TAT
1 AAAAATATAT
8817513 -AAAATATAT
1 AAAAATATAT
*
8817522 AGAAATATA
1 AAAAATATA
8817531 AAATTTTATA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
8 5 0.11
9 12 0.27
10 20 0.44
11 8 0.18
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (10 bp):
AAAAATATAT
Found at i:8817479 original size:20 final size:19
Alignment explanation
Indices: 8817456--8817516 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
8817446 AAAAATGTAG
8817456 AAATGTTAAAAAATATATAA
1 AAATGTTAAAAAAT-TATAA
**
8817476 AAAT-TGTAAAATTTTATAA
1 AAATGT-TAAAAAATTATAA
*
8817495 AAATAGTAAAAAAATTATAA
1 AAAT-GTTAAAAAATTATAA
8817515 AA
1 AA
8817517 TATATAGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
19 10 0.30
20 22 0.67
21 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
AAATGTTAAAAAATTATAA
Found at i:8817486 original size:19 final size:19
Alignment explanation
Indices: 8817464--8817530 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 19
8817454 AGAAATGTTA
*
8817464 AAAAATATATAAAAATTGT
1 AAAAATATATAAAAATAGT
* *
8817483 AAAATTTTATAAAAATAGT
1 AAAAATATATAAAAATAGT
*
8817502 AAAAAAATTATAAAATATA-T
1 AAAAATA-TATAAAA-ATAGT
*
8817522 AGAAATATA
1 AAAAATATA
8817531 AAATTTTATA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 22 0.58
20 13 0.34
21 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAAATATATAAAAATAGT
Found at i:8817522 original size:29 final size:27
Alignment explanation
Indices: 8817419--8817533 Score: 81
Period size: 28 Copynumber: 4.1 Consensus size: 27
8817409 AATTTTAATT
* *
8817419 AAAAATT-TTAAATATTAAAAATTAGAA
1 AAAAATTATAAAATATTAAAAA-TATAA
* * *
8817446 AAAAATGTA-GAAATGTTAAAAAATATAT
1 AAAAAT-TATAAAATATT-AAAAATATAA
* *
8817474 AAAAATTGTAAAATTTTATAAAAATAGTAA
1 AAAAATTATAAAA-TAT-TAAAAATA-TAA
*
8817504 AAAAATTATAAAATATATAGAAATATAA
1 AAAAATTATAAAATAT-TAAAAATATAA
8817532 AA
1 AA
8817534 TTTTATAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
27 7 0.10
28 24 0.34
29 24 0.34
30 15 0.21
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.30
Consensus pattern (27 bp):
AAAAATTATAAAATATTAAAAATATAA
Found at i:8817540 original size:10 final size:10
Alignment explanation
Indices: 8817527--8817552 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8817517 TATATAGAAA
8817527 TATAAAATTT
1 TATAAAATTT
8817537 TATAAAATTT
1 TATAAAATTT
8817547 TATAAA
1 TATAAA
8817553 GTCGCAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TATAAAATTT
Found at i:8817584 original size:58 final size:56
Alignment explanation
Indices: 8817456--8817611 Score: 154
Period size: 58 Copynumber: 2.7 Consensus size: 56
8817446 AAAAATGTAG
** *
8817456 AAATGTTAAA-AAATATATAAAAATTGTAAAATTTTATAAAAATAGTAAAAAAATTATA
1 AAATG-TAAAGAAATATA-AAATTTTGTAAAATTTTAT-AAAATAGCAAAAAAATTATA
* * * * * *
8817514 AAATATATAGAAATATAAAATTTTATAAAATTTTATAAAGTCGCAAGAAAATTATACA
1 AAATGTAAAGAAATATAAAATTTTGTAAAATTTTATAAAATAGCAAAAAAATTAT--A
*
8817572 AAATGTAAAGAAATAT-AAATTTTGTAAATTTTTTATAAAA
1 AAATGTAAAGAAATATAAAATTTTGTAAA-ATTTTATAAAA
8817612 ATTATCGTAC
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
56 15 0.19
57 30 0.38
58 35 0.44
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (56 bp):
AAATGTAAAGAAATATAAAATTTTGTAAAATTTTATAAAATAGCAAAAAAATTATA
Found at i:8818053 original size:87 final size:89
Alignment explanation
Indices: 8817890--8818054 Score: 239
Period size: 88 Copynumber: 1.9 Consensus size: 89
8817880 TTTTATTTTC
8817890 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAAATAGGGGCTTA
1 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAAATAGGGGCTTA
*
8817955 ATTTCTTTTTTTTGAAGAAGTTTG
66 ATTTCTATTTTTTGAAGAAGTTTG
* * * *
8817979 AGGGT-TTTTTTATGCATTTTAAAAGTTCAAGT-GCTAATTGAGTGCGAAAAAAAA-GGGGGCTT
1 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTG-GAAAAAAAATAGGGGCTT
8818041 AATTGT-TATTTTTT
65 AATT-TCTATTTTTT
8818055 TAAAGTTTGA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
87 28 0.41
88 36 0.52
89 5 0.07
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (89 bp):
AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAAATAGGGGCTTA
ATTTCTATTTTTTGAAGAAGTTTG
Found at i:8820070 original size:468 final size:468
Alignment explanation
Indices: 8819289--8820177 Score: 1494
Period size: 468 Copynumber: 1.9 Consensus size: 468
8819279 AACTTTTTGC
8819289 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
1 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
* * *
8819354 GACTTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGTTATATGAACTTATCACTTCAAGT
66 GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
* * ** *
8819419 GTGGCATTTGTTTTACCTTTGGTTCCTATCTCGTTAGATAGTGGGTCAAGGTTTATTTGTTGTCT
131 GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
* *
8819484 TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCTACATTGTTGGT
196 TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCACACTGTTGGT
* *
8819549 TCATCCTTTGCTTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
261 TCAGCCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
8819614 CCTATCTTCTA-CTCGTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCG
326 CCTATCTTCTACCT-GTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCG
*
8819678 GGCACACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACT
390 GGCAAACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACT
8819743 CATATTTTTTTCTT
455 CATATTTTTTTCTT
8819757 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
1 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
* * *
8819822 GAATTATCAAGTTAGGCTTGTGGCGTCATTTCCTTCCTTTGCTATCCGAACTTATCACTTCAAGT
66 GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
* *
8819887 GTGGCGTTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAATGTTTATTTGTTGT-T
131 GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
* * *
8819951 TCCTAAATTAAATTATCCAACTAAGTGCTTTTAAGACTTGGGTCAACAATCATCCATACTGTTGG
196 T-CTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCACACTGTTGG
* *
8820016 TTCAGCCTTTGCCTTAGCCAAACCTATCTATCCATTTCTTAAACATTCTTTGAACCTCTGTTTGA
260 TTCAGCCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGA
** * *
8820081 GCCTATCTTCTACCTGTTTTCAGCCTTTCTTGAAACGACTCACAACTTACTCAATTTCTCGATTG
325 GCCTATCTTCTACCTGTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCG
*
8820146 GGCAAACACATACGACTCGAAACTACATCAAC
390 GGCAAACACATACGACTCAAAACTACATCAAC
8820178 TGATTTCATA
Statistics
Matches: 391, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
467 2 0.01
468 387 0.99
469 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (468 bp):
CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCACACTGTTGGT
TCAGCCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
CCTATCTTCTACCTGTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCGG
GCAAACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACTC
ATATTTTTTTCTT
Found at i:8820289 original size:23 final size:24
Alignment explanation
Indices: 8820259--8820305 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
8820249 GTGATTTTAT
*
8820259 AAAAAAAAGATTCG-AAAAAAATA
1 AAAAAAAAAATTCGCAAAAAAATA
8820282 AAAAAAAAAATTCGTCAAAAAAAT
1 AAAAAAAAAATTCG-CAAAAAAAT
8820306 TTCAACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.62
25 8 0.38
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.15
Consensus pattern (24 bp):
AAAAAAAAAATTCGCAAAAAAATA
Found at i:8827582 original size:38 final size:38
Alignment explanation
Indices: 8827540--8827617 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
8827530 CTAATTTCAC
8827540 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
1 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
*
8827578 ATCAACAACTATTAAATCATGATATTCCTTTAATGACA
1 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
8827616 AT
1 AT
8827618 GTTAAAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.33
Consensus pattern (38 bp):
ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
Found at i:8828242 original size:18 final size:18
Alignment explanation
Indices: 8828210--8828259 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
8828200 AGATTAGAGT
**
8828210 TTGATATTTTGATTTAAA
1 TTGATATTTAAATTTAAA
*
8828228 TTGATATTTAAATTTAAT
1 TTGATATTTAAATTTAAA
**
8828246 TTTTTATTTAAATT
1 TTGATATTTAAATT
8828260 AGTATTTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TTGATATTTAAATTTAAA
Found at i:8829663 original size:20 final size:19
Alignment explanation
Indices: 8829640--8829710 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 19
8829630 TTTTATTAAT
8829640 TTAATATTAAAGTGATTATA
1 TTAATATTAAAGT-ATTATA
*
8829660 TTAATATTAAATTTAATCTAATA
1 TTAATATTAAA-GT-AT-T-ATA
*
8829683 TTTATATTGATAAGTATTATA
1 TTAATATT-A-AAGTATTATA
8829704 TTAATAT
1 TTAATAT
8829711 AATATTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 11 0.27
21 12 0.29
22 2 0.05
23 12 0.29
24 2 0.05
25 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (19 bp):
TTAATATTAAAGTATTATA
Found at i:8830510 original size:20 final size:20
Alignment explanation
Indices: 8830485--8830536 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
8830475 GGGCACACGA
* *
8830485 CCGTGTGGCCTGGGATATGC
1 CCGTGTGGCCTAGGACATGC
*
8830505 CCGTGTGGTCTAGGACATGC
1 CCGTGTGGCCTAGGACATGC
*
8830525 CCGTTTGGCCTA
1 CCGTGTGGCCTA
8830537 CTTGTGGGCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.27, G:0.35, T:0.27
Consensus pattern (20 bp):
CCGTGTGGCCTAGGACATGC
Found at i:8831354 original size:46 final size:50
Alignment explanation
Indices: 8831304--8831411 Score: 125
Period size: 53 Copynumber: 2.2 Consensus size: 50
8831294 TAGCCCTGCC
* *
8831304 ATGGTCTTACACG-GATCACA-TA-ACAT-ACCGATGCCATATCCCAAAT
1 ATGGTCTTACACGAAATCACATTACACATCACCGATGCCATAGCCCAAAT
* *
8831350 ATGGTCTTATACGAAATCACATTATCACATCACACCGATGCCATAGCCCAACT
1 ATGGTCTTACACGAAATCACATTA-CACAT--CACCGATGCCATAGCCCAAAT
8831403 ATGGTCTTA
1 ATGGTCTTA
8831412 TATGGAAGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
46 12 0.24
47 6 0.12
48 2 0.04
50 4 0.08
53 27 0.53
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACACGAAATCACATTACACATCACCGATGCCATAGCCCAAAT
Found at i:8833328 original size:49 final size:49
Alignment explanation
Indices: 8833212--8833352 Score: 115
Period size: 49 Copynumber: 2.9 Consensus size: 49
8833202 CATGAAACTG
* * * *
8833212 GAACTCGAGACCGTATAACCACCGTCAATTGGGGGCCTAAGTTATATTT
1 GAACTCGTGACCGTATAACCACCGTCAACTGGGAGCCCAAGTTATATTT
*** ** *
8833261 GAAC-CTGTGACTACATAACCATTGTTAACTGGGAGCCCAAGTTATACTTT
1 GAACTC-GTGACCGTATAACCACCGTCAACTGGGAGCCCAAGTTATA-TTT
* * * * *
8833311 -AACTCGTGACCGTATAACTACCGTGAAATGAGATCCCAAGTT
1 GAACTCGTGACCGTATAACCACCGTCAACTGGGAGCCCAAGTT
8833353 GCAATGTGAC
Statistics
Matches: 69, Mismatches: 20, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
48 1 0.01
49 64 0.93
50 4 0.06
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (49 bp):
GAACTCGTGACCGTATAACCACCGTCAACTGGGAGCCCAAGTTATATTT
Found at i:8835799 original size:23 final size:22
Alignment explanation
Indices: 8835764--8835809 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
8835754 CCGAACGTGG
* *
8835764 TTCGGGAAGTGGACATCTCGATT
1 TTCGCGAAATGGACAT-TCGATT
*
8835787 TTCGCGAAATGGAGATTCGATT
1 TTCGCGAAATGGACATTCGATT
8835809 T
1 T
8835810 CTTCGAACTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (22 bp):
TTCGCGAAATGGACATTCGATT
Found at i:8838195 original size:25 final size:25
Alignment explanation
Indices: 8838160--8838209 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8838150 AAATATAATT
8838160 AAATAAGTAATATAATTTTCTTCTC
1 AAATAAGTAATATAATTTTCTTCTC
*
8838185 AAATAATTAATATAATTTTCTTCTC
1 AAATAAGTAATATAATTTTCTTCTC
8838210 TTGAATTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (25 bp):
AAATAAGTAATATAATTTTCTTCTC
Found at i:8838550 original size:29 final size:30
Alignment explanation
Indices: 8838518--8838581 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
8838508 TGTTTATCGG
*
8838518 TAAAATTTTACTTTAA-TTTTTAAAAATAA
1 TAAAATTTTAATTTAATTTTTTAAAAATAA
*
8838547 TAAAATTTTAATTTAATTTTTTAAAAATTA
1 TAAAATTTTAATTTAATTTTTTAAAAATAA
8838577 TAAAA
1 TAAAA
8838582 GTATAAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (30 bp):
TAAAATTTTAATTTAATTTTTTAAAAATAA
Found at i:8838591 original size:15 final size:17
Alignment explanation
Indices: 8838570--8838610 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
8838560 TAATTTTTTA
*
8838570 AAAATTATAAAAGT-AT
1 AAAATTATAAAAATAAT
8838586 -AAATTATAAAAATAAT
1 AAAATTATAAAAATAAT
8838602 AAAATTATA
1 AAAATTATA
8838611 TTTTTACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 12 0.55
16 2 0.09
17 8 0.36
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATTATAAAAATAAT
Found at i:8846166 original size:15 final size:15
Alignment explanation
Indices: 8846146--8846186 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
8846136 AATTGGACAG
8846146 TGGATACATCACTAA
1 TGGATACATCACTAA
*
8846161 TGGATACATCACTAG
1 TGGATACATCACTAA
8846176 TGGATACATCA
1 TGGATACATCA
8846187 TTGTTTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (15 bp):
TGGATACATCACTAA
Found at i:8851393 original size:357 final size:358
Alignment explanation
Indices: 8850731--8852137 Score: 2442
Period size: 357 Copynumber: 3.9 Consensus size: 358
8850721 AAGAAATGAT
8850731 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
8850796 CATAAGAACAACAATCGGGGACCCATGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGC
66 CATAAGAACAACAATCGGGGACCCATGA-CCAT------GAGTGCAGTTTGAAAGACAGTCTAGC
*
8850861 AAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATC
124 AAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATC
* * *
8850926 TATGTCCCTTTCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAA
189 TATGTCCCTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAA
*
8850991 TAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
254 TAACCAACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
8851056 CAGGGAACTAAAAGC-AATGCCAAACCATGTTTAATTGCA
319 CAGGGAACTAAAAGCAAATGCCAAACCATGTTTAATTGCA
*
8851095 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTTACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* *
8851160 CATAAGAGCAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
* *
8851225 GTAACGATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGGTCTATGTCC
131 GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
8851290 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
196 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
* *
8851355 CAATGGTTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAA
261 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
* *
8851420 CTAAAAGCAAATACCAAACCATGTTCAATTGCA
326 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
*
8851453 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* *
8851518 CATAAGGACAACAATCGGGGACCCATGACCA-GAGTGCAGTTTGAAAGATAGTCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
*
8851582 ATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
131 GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
* * * *
8851647 CGATCAAGAGCGATTCAAATGACAACATTCAAATATCAACCAACTAGTAATCACGAAATAACCAA
196 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
8851712 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
261 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
8851777 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
326 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
* *
8851810 ATAACATACAACTTTTACCTTATGAAGTCAAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* ** *
8851875 CAGAAGAACAACAATCGGGGACCCATGACTGTGGGTGCAGTTTG-AAGACAGTCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
8851939 GTAACTATGTTACAAATTATATCAACAGCATAACAAATTTTCTTGATGACTAATTGATCTATGTC
131 GTAACTATGTTACAAATTATATCAACAGCATAAC-AATTTTCTTGATGACTAATTGATCTATGTC
*
8852004 CCTACCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCA
195 CCTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCA
* *
8852069 ACAATGGTTTCGGAACATTATTTCCAGTGGCAAATGTGATTTTGATTGTAAGCTCTGAACAGGGA
260 ACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGA
8852134 ACTA
325 ACTA
8852138 TTGTGATTGT
Statistics
Matches: 992, Mismatches: 48, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
357 615 0.62
358 282 0.28
363 4 0.00
364 91 0.09
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (358 bp):
ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
Found at i:8852136 original size:715 final size:717
Alignment explanation
Indices: 8850731--8852137 Score: 2498
Period size: 715 Copynumber: 2.0 Consensus size: 717
8850721 AAGAAATGAT
*
8850731 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
8850796 CATAAGAACAACAATCGGGGACCCATGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGC
66 CATAAGAACAACAATCGGGG---C--GACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGC
* *
8850861 AAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATC
126 AAATCAGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATC
**
8850926 TATGTCCCTTTCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAA
191 TATGTCCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAA
8850991 TAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
256 TAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
*
8851056 CAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAG
321 CAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAA
* * * *
8851121 GTCGAAACGGCAGTTCATCTCAGTTTACATTCCGCATCACATAAGAGCAACAATCGGGGACCCAT
386 GTCAAAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCAT
8851186 GACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAAC
451 GACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAAC
* *
8851251 AGCATAACAATTTTCTTGATGACTAATTGGTCTATGTCCCTATCAAGAGAGATTCAAAAGACAAC
516 AGCATAACAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAAC
8851316 ATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAG
581 ATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAG
8851381 TGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTTC
646 TGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTTC
8851446 AATTGCA
711 AATTGCA
8851453 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* *
8851518 CATAAGGACAACAATC-GGG-GACCCATGACCA-GAGTGCAGTTTGAAAGATAGTCTAGCAAATC
66 CATAAGAACAACAATCGGGGCGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGCAAATC
8851580 AGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGT
131 AGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGT
* * *
8851645 CCCGATCAAGAGCGATTCAAATGACAACATTCAAATATCAACCAACTAGTAATCACGAAATAACC
196 CCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACC
*
8851710 AACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGG
261 AACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGG
8851775 AACTAAAAGCAAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTCA
326 AACTAAAAGC-AATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTCA
*
8851840 AAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGACT
390 AAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGACC
* * * *
8851905 GTGGGTGCAGTTTG-AAGACAGTCTAGCAAATCAGGTAACTATGTTACAAATTATATCAACAGCA
455 ATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAACAGCA
8851969 TAACAAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACATT
520 TAAC-AATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACATT
8852034 CAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTGG
584 CAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTGG
* *
8852099 CAAATGTGATTTTGATTGTAAGCTCTGAACAGGGAACTA
649 CAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTA
8852138 TTGTGATTGT
Statistics
Matches: 658, Mismatches: 25, Indels: 11
0.95 0.04 0.02
Matches are distributed among these distances:
714 279 0.42
715 297 0.45
721 3 0.00
722 79 0.12
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (717 bp):
ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
CATAAGAACAACAATCGGGGCGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGCAAATC
AGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGT
CCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACC
AACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGG
AACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTCAA
AACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGACCA
TGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAACAGCAT
AACAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACATTCA
AATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTGGCA
AATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTTCAATTG
CA
Found at i:8861136 original size:56 final size:56
Alignment explanation
Indices: 8861036--8861147 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 56
8861026 CCCATATGAA
* * * * *
8861036 TATACTGACTTGGGACACACGGCCAAACCACACGCTTGTGTGCTAAGCTGTGTGAG
1 TATACTGACTTAGGACACACCGCCAAACCACACGCTCGTATGCTAAGCCGTGTGAG
* * *
8861092 TATACTGACTTAGGTCACACCGCCAAACCATACG-TCCGTATGCTAGGCCGTGTGAG
1 TATACTGACTTAGGACACACCGCCAAACCACACGCT-CGTATGCTAAGCCGTGTGAG
8861148 CAATTTGAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
55 1 0.02
56 46 0.98
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (56 bp):
TATACTGACTTAGGACACACCGCCAAACCACACGCTCGTATGCTAAGCCGTGTGAG
Found at i:8864135 original size:3 final size:3
Alignment explanation
Indices: 8864114--8864172 Score: 95
Period size: 3 Copynumber: 20.0 Consensus size: 3
8864104 TTATCTCAAT
8864114 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8864158 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
8864173 GTAAATATCT
Statistics
Matches: 53, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.08
3 46 0.87
4 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8866917 original size:46 final size:46
Alignment explanation
Indices: 8866865--8867132 Score: 367
Period size: 46 Copynumber: 5.8 Consensus size: 46
8866855 AGTGTGCTCT
* *
8866865 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8866911 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8866957 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8867003 CTGACATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
8867049 ATGACATAAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATAT-GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
8867096 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
8867133 TATGACATCA
Statistics
Matches: 203, Mismatches: 17, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
46 161 0.79
47 42 0.21
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8868523 original size:25 final size:25
Alignment explanation
Indices: 8868478--8868542 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
8868468 TGAGCATGTA
* *
8868478 AACGAGAAGCTCTTCCAAGCTATAT
1 AACGAGAAGCTCATGCAAGCTATAT
* *
8868503 AACGAGAAGCTCATGCGAGCTGTAT
1 AACGAGAAGCTCATGCAAGCTATAT
* *
8868528 ATCGGGAAGCTCATG
1 AACGAGAAGCTCATG
8868543 AGAGTTGTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (25 bp):
AACGAGAAGCTCATGCAAGCTATAT
Found at i:8872493 original size:13 final size:13
Alignment explanation
Indices: 8872475--8872499 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8872465 GAAAACGTAA
8872475 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
8872488 AAAAAAGAAAAA
1 AAAAAAGAAAAA
8872500 AAACCCATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:8873869 original size:15 final size:15
Alignment explanation
Indices: 8873849--8873889 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8873839 TAAGAGAGTG
8873849 TAATTACTACTTTAA
1 TAATTACTACTTTAA
* *
8873864 TAATTATTACTCTAA
1 TAATTACTACTTTAA
8873879 TAATTAC-ACTT
1 TAATTACTACTT
8873890 CTATTCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (15 bp):
TAATTACTACTTTAA
Found at i:8882362 original size:31 final size:32
Alignment explanation
Indices: 8882308--8882370 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
8882298 TTAATTTTTT
*
8882308 ATAATATCTACTTTACCCCTATTAACT-TTAA
1 ATAATACCTACTTTACCCCTATTAACTCTTAA
***
8882339 ATAATACCTACTTTACGTTTATTAACTCTTAA
1 ATAATACCTACTTTACCCCTATTAACTCTTAA
8882371 TAACTCCTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.43
Consensus pattern (32 bp):
ATAATACCTACTTTACCCCTATTAACTCTTAA
Found at i:8882373 original size:31 final size:31
Alignment explanation
Indices: 8882293--8882354 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
8882283 ATAAAATTGT
* ** *
8882293 CCCTATTAATTTTTTATAATATCTACTTTAC
1 CCCTATTAACTTTAAATAATACCTACTTTAC
8882324 CCCTATTAACTTTAAATAATACCTACTTTAC
1 CCCTATTAACTTTAAATAATACCTACTTTAC
8882355 GTTTATTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (31 bp):
CCCTATTAACTTTAAATAATACCTACTTTAC
Found at i:8883776 original size:17 final size:19
Alignment explanation
Indices: 8883753--8883790 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
8883743 CATGTGTGCA
8883753 AATAATATACATATGTATAT
1 AATAATA-ACATATGTATAT
*
8883773 AATAATAATATATGTATA
1 AATAATAACATATGTATA
8883791 CTTAAACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (19 bp):
AATAATAACATATGTATAT
Found at i:8883808 original size:5 final size:5
Alignment explanation
Indices: 8883798--8883845 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
8883788 ATACTTAAAC
8883798 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
8883846 GTATAATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:8883938 original size:13 final size:13
Alignment explanation
Indices: 8883907--8883952 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 13
8883897 AAATTGAAAC
* *
8883907 GAAACAGAGGGAA
1 GAAAGAGAGAGAA
8883920 -AAAGAGAGAGAA
1 GAAAGAGAGAGAA
8883932 GAAAGAGAGA-AA
1 GAAAGAGAGAGAA
8883944 GAAAG-GAGA
1 GAAAGAGAGA
8883953 AGAGTTAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 4 0.13
12 17 0.57
13 9 0.30
ACGTcount: A:0.61, C:0.02, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAAGAGAGAGAA
Found at i:8891193 original size:2 final size:2
Alignment explanation
Indices: 8891186--8891210 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8891176 TCTTTTATTT
8891186 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8891211 TATTCCCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8892376 original size:22 final size:22
Alignment explanation
Indices: 8892351--8892393 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8892341 AATTTAGTTG
8892351 TAAAACAAAAAT-TATTATTTTA
1 TAAAA-AAAAATATATTATTTTA
*
8892373 TAAAATAAAATATATTATTTT
1 TAAAAAAAAATATATTATTTT
8892394 GAATGTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
TAAAAAAAAATATATTATTTTA
Found at i:8893960 original size:24 final size:27
Alignment explanation
Indices: 8893927--8893977 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
8893917 GTGAGGGGAA
8893927 ATTATATTATGGATT-TTTTT-ATTAT
1 ATTATATTATGGATTATTTTTAATTAT
8893952 ATTAT-TTATGGATTATTTTTAATTAT
1 ATTATATTATGGATTATTTTTAATTAT
8893978 TTAATGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 9 0.38
25 10 0.42
26 5 0.21
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (27 bp):
ATTATATTATGGATTATTTTTAATTAT
Found at i:8893978 original size:24 final size:25
Alignment explanation
Indices: 8893927--8893978 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
8893917 GTGAGGGGAA
*
8893927 ATTATATTATGGATTTTTTTATTAT
1 ATTATATTATGGATTTTTTTAATAT
8893952 ATTAT-TTATGGATTATTTTTAAT-T
1 ATTATATTATGGATT-TTTTTAATAT
8893976 ATT
1 ATT
8893979 TAATGATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (25 bp):
ATTATATTATGGATTTTTTTAATAT
Found at i:8894116 original size:20 final size:20
Alignment explanation
Indices: 8894093--8894130 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8894083 TCCTAAATCA
*
8894093 TGAACTTGAACCCTAAACTT
1 TGAACCTGAACCCTAAACTT
*
8894113 TGAACCTGAACTCTAAAC
1 TGAACCTGAACCCTAAAC
8894131 CTTAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (20 bp):
TGAACCTGAACCCTAAACTT
Found at i:8894433 original size:18 final size:19
Alignment explanation
Indices: 8894405--8894444 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
8894395 TGTAATTTAA
**
8894405 ATTTGTAGTTTTTTTTCAT
1 ATTTGTAGTTTAATTTCAT
8894424 ATTT-TAGTTTAATTTCAT
1 ATTTGTAGTTTAATTTCAT
8894442 ATT
1 ATT
8894445 ACCATTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (19 bp):
ATTTGTAGTTTAATTTCAT
Done.