Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 306 of 316
Found at i:100594677 original size:77 final size:75
Alignment explanation
Indices: 100594498--100595157 Score: 477
Period size: 72 Copynumber: 8.5 Consensus size: 75
100594488 CAGTGTGTAA
* * *
100594498 TCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTAAAAACAGAAATTGAAAAT
1 TCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTTGAAAACAGAAATTGAAAAT
*
100594563 ACCTCAGCATGTG
65 ACCTCA--ACGTG
* *
100594576 AACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAA
1 -TCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTTGAAAACAGAAATTGAAAA
100594641 TACCTCAACGTG
64 TACCTCAACGTG
** ** *
100594653 TCTTGAGGCTCAACTCATTTCTCGCAATATAA---G-TTTAATTTTGAAAACAGAAATTGAAATT
1 TC-TGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAAT
*
100594714 ACCTCAGCGTG
65 ACCTCAACGTG
* * *
100594725 TCCTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTTTT-ACGAACAGAAATTGAAGA
1 T-CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGA-AAACAGAAATTG-A-A
* ** * *
100594789 ACAGAAATTGAAAAGACCTCAG
62 A-A-TACCT---CA-ACGT--G
* * * * ** ** * **
100594811 -CATGTGAGC-CGAGGCTCAACTCAC-CTCTCGCAA-TATGAGTTAATTTTTGACAAACAGAAAT
1 TC-TGAG-GCTC-A-ACTCACCTCTCGCAAT-ATAAGT-TGATTTTTTTTT-GA-AAACAGAAAT
* *
100594872 TGAAATTACCTCAGCGTG
58 TGAAAATACCTCAACGTG
*
100594890 TGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTTGAAAACAGAAATTGA
1 T---CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTTTGAAAACAGAAATTGA
100594955 AAATACCTCAACGTG
61 AAATACCTCAACGTG
** * *
100594970 TCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATT
1 TC-TGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAAT
*
100595031 ACCTCAGCGTG
65 ACCTCAACGTG
** * *
100595042 TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTT-AACAACAGAAATTGAAAT
1 T-CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAA-AACAGAAATTGAAAA
*
100595105 TACCTCAGCGTG
64 TACCTCAACGTG
* * *
100595117 TCCTGAAGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 T-CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
100595158 GAAAAACAAA
Statistics
Matches: 465, Mismatches: 75, Indels: 85
0.74 0.12 0.14
Matches are distributed among these distances:
72 127 0.27
73 2 0.00
74 3 0.01
75 66 0.14
76 22 0.05
77 32 0.07
78 33 0.07
79 67 0.14
80 42 0.09
81 10 0.02
82 10 0.02
83 2 0.00
84 3 0.01
85 6 0.01
86 7 0.02
87 19 0.04
88 1 0.00
89 13 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
TCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATA
CCTCAACGTG
Found at i:100594792 original size:14 final size:14
Alignment explanation
Indices: 100594773--100594800 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100594763 TTTTTTTTAC
100594773 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100594787 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100594801 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:100594808 original size:90 final size:90
Alignment explanation
Indices: 100594693--100594858 Score: 246
Period size: 92 Copynumber: 1.8 Consensus size: 90
100594683 AAGTTTAATT
** * *
100594693 TTGAAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCGCCTCTCGCAATATG
1 TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATG
*
100594756 AGTTGATTTTTTTTTACGAACAGAAA
65 AGTTAATTTTTTTTTACGAACAGAAA
100594782 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAA-AACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
100594847 GAGTTAATTTTT
64 GAGTTAATTTTT
100594859 GACAAACAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
89 5 0.07
90 22 0.32
92 39 0.57
93 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (90 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTTTTTTTTACGAACAGAAA
Found at i:100594911 original size:75 final size:72
Alignment explanation
Indices: 100594782--100595171 Score: 419
Period size: 75 Copynumber: 5.2 Consensus size: 72
100594772 CGAACAGAAA
** *
100594782 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAA-AACAGAAATTGAAATTACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATAT
100594847 GAGTT-AATTT
62 GAGTTGAATTT
100594857 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGA-AAACAGAAATTGAAATTACCTCAGCGTGT---CCGAGGCTCAACTCACCTCTCGCAATAT
* *
100594922 AAGTTGATTTTTTTTT
62 GAGTTGA-----ATTT
* * * ** *
100594938 TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAG
100595003 TTGAA-TT
65 TTGAATTT
**
100595010 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAG
*
100595075 TTGATTTTT
65 TTGA-ATTT
* * *
100595084 TTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTAGCAATATGA
1 TTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGA
100595149 GTTG-A-TT
64 GTTGAATTT
*
100595156 TTGAAAAACAAAAATT
1 TTG-AAAACAGAAATT
100595172 AAAAGGCTTA
Statistics
Matches: 275, Mismatches: 24, Indels: 35
0.82 0.07 0.10
Matches are distributed among these distances:
72 79 0.29
73 5 0.02
74 6 0.02
75 117 0.43
76 2 0.01
77 1 0.00
78 31 0.11
80 27 0.10
81 7 0.03
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGAATTT
Found at i:100595322 original size:70 final size:70
Alignment explanation
Indices: 100595175--100595349 Score: 212
Period size: 70 Copynumber: 2.5 Consensus size: 70
100595165 AAAAATTAAA
* * * * * **
100595175 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
100595239 CCCCG
66 CCCCG
*
100595244 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA-AAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
100595308 GTCTTG
65 GCCCCG
100595314 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
100595350 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
69 27 0.29
70 61 0.66
71 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:100611051 original size:30 final size:30
Alignment explanation
Indices: 100611010--100611173 Score: 283
Period size: 30 Copynumber: 5.5 Consensus size: 30
100611000 NNNNNNNGAG
*
100611010 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAA
1 AAGGAGTGGCTAGTGGAGTTGGTGGTGGAA
*
100611040 AAAGAGTGGCTAGTGGAGTTGGTGGTGGAA
1 AAGGAGTGGCTAGTGGAGTTGGTGGTGGAA
*
100611070 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAA
1 AAGGAGTGGCTAGTGGAGTTGGTGGTGGAA
*
100611100 AAAGAGTGGCTAGTGGAGTTGGTGGTGGAA
1 AAGGAGTGGCTAGTGGAGTTGGTGGTGGAA
*
100611130 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAA
1 AAGGAGTGGCTAGTGGAGTTGGTGGTGGAA
100611160 AAGGAGTGGCTAGT
1 AAGGAGTGGCTAGT
100611174 TGAGAAAGTT
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 125 1.00
ACGTcount: A:0.23, C:0.04, G:0.48, T:0.25
Consensus pattern (30 bp):
AAGGAGTGGCTAGTGGAGTTGGTGGTGGAA
Found at i:100611103 original size:60 final size:60
Alignment explanation
Indices: 100611010--100611173 Score: 319
Period size: 60 Copynumber: 2.7 Consensus size: 60
100611000 NNNNNNNGAG
100611010 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAA
1 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAA
100611070 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAA
1 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAA
*
100611130 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
100611174 TGAGAAAGTT
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 103 1.00
ACGTcount: A:0.23, C:0.04, G:0.48, T:0.25
Consensus pattern (60 bp):
AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAA
Found at i:100617646 original size:12 final size:12
Alignment explanation
Indices: 100617612--100617646 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
100617602 AAAAAAAAAC
100617612 TATTTTATTTAA
1 TATTTTATTTAA
* *
100617624 TATTCTGTTTAA
1 TATTTTATTTAA
100617636 TATTTTATTTA
1 TATTTTATTTA
100617647 TTTAATTTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (12 bp):
TATTTTATTTAA
Found at i:100622220 original size:15 final size:16
Alignment explanation
Indices: 100622202--100622239 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
100622192 ATTTATGTAA
*
100622202 TTTTATATATA-AAAT
1 TTTTATATAAACAAAT
*
100622217 TTTTATTTAAACAAAT
1 TTTTATATAAACAAAT
100622233 TTTTATA
1 TTTTATA
100622240 AATTATTATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTATATAAACAAAT
Found at i:100624196 original size:19 final size:18
Alignment explanation
Indices: 100624157--100624207 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
100624147 CACGTTCTCC
*
100624157 TTTTGTTATT-TCTTTCT
1 TTTTGTTATTATTTTTCT
100624174 TTTTGTTATTATTTTTCCT
1 TTTTGTTATTATTTTT-CT
* *
100624193 TTTTATTTTTATTTT
1 TTTTGTTATTATTTT
100624208 ATTTCTTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 10 0.34
18 4 0.14
19 15 0.52
ACGTcount: A:0.10, C:0.08, G:0.04, T:0.78
Consensus pattern (18 bp):
TTTTGTTATTATTTTTCT
Found at i:100630575 original size:15 final size:15
Alignment explanation
Indices: 100630555--100630606 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
100630545 ACTACAAAAC
100630555 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
100630570 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
100630589 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
100630604 ATT
1 ATT
100630607 AACATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:100630670 original size:16 final size:16
Alignment explanation
Indices: 100630639--100630675 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
100630629 ATGCTAATAA
100630639 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
100630655 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
100630671 TATTA
1 TATTA
100630676 AAATAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:100643589 original size:46 final size:46
Alignment explanation
Indices: 100643529--100643848 Score: 448
Period size: 46 Copynumber: 7.0 Consensus size: 46
100643519 TTTGACATGA
* * * * * *
100643529 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* * * *
100643575 TGCCATGGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** * *
100643621 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATTACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
100643667 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG-T
100643714 T-CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
100643759 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
100643805 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
100643849 AGAGCACACT
Statistics
Matches: 257, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
45 6 0.02
46 249 0.97
47 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:100646005 original size:14 final size:13
Alignment explanation
Indices: 100645982--100646014 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
100645972 TTTTATACTA
100645982 AATAAATAATAAT
1 AATAAATAATAAT
100645995 AATATAATAATAAT
1 AATA-AATAATAAT
100646009 AATAAA
1 AATAAA
100646015 CATCTCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AATAAATAATAAT
Found at i:100650162 original size:27 final size:27
Alignment explanation
Indices: 100650132--100650191 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
100650122 ACATGCTTGG
*
100650132 CATCGAAGAAACCACCAACCACATTGA
1 CATCAAAGAAACCACCAACCACATTGA
100650159 CATCAAAGAAACCACCAACCACATTGA
1 CATCAAAGAAACCACCAACCACATTGA
100650186 CATCAA
1 CATCAA
100650192 GGATCTTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.47, C:0.33, G:0.08, T:0.12
Consensus pattern (27 bp):
CATCAAAGAAACCACCAACCACATTGA
Found at i:100650663 original size:51 final size:51
Alignment explanation
Indices: 100650587--100650691 Score: 140
Period size: 51 Copynumber: 2.1 Consensus size: 51
100650577 ATTTTAAGGA
* *
100650587 CTCCCAACTGAATTGCTTAAAGTGATTGGATAAGTATGAAAGGCTTATTAT
1 CTCCCAACTGAATTGCTTAAAGTGATTAGATAAGCATGAAAGGCTTATTAT
* * * *
100650638 CTCCCAATTGAATTGC-TAGAGGTGATTAGATAAGCATGAAAGTCTTCTTAT
1 CTCCCAACTGAATTGCTTA-AAGTGATTAGATAAGCATGAAAGGCTTATTAT
100650689 CTC
1 CTC
100650692 TTAGTAATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 2 0.04
51 45 0.96
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (51 bp):
CTCCCAACTGAATTGCTTAAAGTGATTAGATAAGCATGAAAGGCTTATTAT
Found at i:100652853 original size:28 final size:27
Alignment explanation
Indices: 100652821--100652873 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
100652811 GTATTATATA
100652821 ATAATGAAAATAGTTAATAATAATAGTT
1 ATAATGAAAATAGTT-ATAATAATAGTT
*
100652849 ATAATGATAATAGTTATAATAATAG
1 ATAATGAAAATAGTTATAATAATAG
100652874 AATAGTAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (27 bp):
ATAATGAAAATAGTTATAATAATAGTT
Found at i:100652858 original size:15 final size:15
Alignment explanation
Indices: 100652821--100652868 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
100652811 GTATTATATA
*
100652821 ATAATGAAAATAG-T
1 ATAATGATAATAGTT
*
100652835 -TAATAATAATAGTT
1 ATAATGATAATAGTT
100652849 ATAATGATAATAGTT
1 ATAATGATAATAGTT
100652864 ATAAT
1 ATAAT
100652869 AATAGAATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 10 0.34
14 1 0.03
15 18 0.62
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (15 bp):
ATAATGATAATAGTT
Found at i:100652936 original size:14 final size:14
Alignment explanation
Indices: 100652906--100652949 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 14
100652896 AATTAAATAG
100652906 AAAAAGAAGAAAGAAA
1 AAAAAGAA-AAA-AAA
100652922 AAAAAGAAAAAAAA
1 AAAAAGAAAAAAAA
*
100652936 AAGAAGAAAGAAAA
1 AAAAAGAAA-AAAA
100652950 TAAGGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 11 0.42
15 7 0.27
16 8 0.31
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAA
Found at i:100652958 original size:26 final size:26
Alignment explanation
Indices: 100652906--100652981 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
100652896 AATTAAATAG
*
100652906 AAAAAGAAGAAAGAAAAAAAAGAAAAA
1 AAAAAGAAGAAAG-AAAAAAAGGAAAA
*
100652933 AAAAAGAAGAAAGAAAATAAGGAAAA
1 AAAAAGAAGAAAGAAAAAAAGGAAAA
* *
100652959 ATAAAGAAGAAAGAAAAGAAGGA
1 AAAAAGAAGAAAGAAAAAAAGGA
100652982 GAACGCACGG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 32 0.71
27 13 0.29
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.03
Consensus pattern (26 bp):
AAAAAGAAGAAAGAAAAAAAGGAAAA
Found at i:100657753 original size:30 final size:30
Alignment explanation
Indices: 100657717--100657779 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
100657707 ACTTATTTTA
*
100657717 TTGTTAATTTTCTTATTATTTTAAAGGCAT
1 TTGTTAATTTTCTTATTACTTTAAAGGCAT
* * *
100657747 TTGTTAATTTTTTTATTACTTTAGAGTCAT
1 TTGTTAATTTTCTTATTACTTTAAAGGCAT
100657777 TTG
1 TTG
100657780 CTTGGTAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.06, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTACTTTAAAGGCAT
Found at i:100660142 original size:13 final size:13
Alignment explanation
Indices: 100660124--100660163 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
100660114 AGAGTAATCG
100660124 CACACAGGCGTGT
1 CACACAGGCGTGT
100660137 CACACAGGCGTGT
1 CACACAGGCGTGT
100660150 CACACAGGCGTGT
1 CACACAGGCGTGT
100660163 C
1 C
100660164 CCTACCGAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.23, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACAGGCGTGT
Found at i:100663706 original size:15 final size:13
Alignment explanation
Indices: 100663697--100663752 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 13
100663687 AATATTATTA
100663697 AATTATATATTTT
1 AATTATATATTTT
100663710 AATTATAATATATTT
1 AATTAT-ATAT-TTT
* *
100663725 AATAATAATTATGTT
1 AATTAT-A-TATTTT
100663740 AATT-TATATTTT
1 AATTATATATTTT
100663752 A
1 A
100663753 TAGTATCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
12 6 0.17
13 7 0.19
14 5 0.14
15 15 0.42
16 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
AATTATATATTTT
Found at i:100663722 original size:16 final size:16
Alignment explanation
Indices: 100663701--100663743 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
100663691 TTATTAAATT
100663701 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
100663717 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
100663732 AT-TATGTTAATT
1 ATATATTTTAATT
100663744 TATATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 16 0.70
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:100663783 original size:120 final size:120
Alignment explanation
Indices: 100663638--100663859 Score: 426
Period size: 120 Copynumber: 1.9 Consensus size: 120
100663628 GCAATAACAG
*
100663638 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATATTATTAAATTAT
1 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATATTATTAAATTAT
100663703 ATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
66 ATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
*
100663758 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTAT
1 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATATTATTAAATTAT
100663823 ATATTTTAATTATAATATATTTAATAATAATTATGTT
66 ATATTTTAATTATAATATATTTAATAATAATTATGTT
100663860 TAAATATGAT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATATTATTAAATTAT
ATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
Found at i:100663825 original size:61 final size:60
Alignment explanation
Indices: 100663640--100663827 Score: 188
Period size: 61 Copynumber: 3.1 Consensus size: 60
100663630 AATAACAGTC
*
100663640 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATATTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAA-AATTTTATTAAATT
* * * * * * * * * *
100663701 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTATATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAAATTTTATTA-AATT
100663760 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAA-AATTTTATTAAATT
100663821 ATATATT
1 ATATATT
100663828 TTAATTATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 28 0.29
60 26 0.27
61 36 0.38
62 3 0.03
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (60 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAAATTTTATTAAATT
Found at i:100663842 original size:16 final size:16
Alignment explanation
Indices: 100663821--100663862 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
100663811 TTATTAAATT
*
100663821 ATATATTTTAATTATA
1 ATATATTTTAATAATA
100663837 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
100663852 AT-TATGTTTAA
1 ATATAT-TTTAA
100663863 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:100663847 original size:15 final size:15
Alignment explanation
Indices: 100663812--100663853 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
100663802 TTAAGAATTT
*
100663812 TATTAAATTAT-ATA
1 TATTTAATTATAATA
100663826 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
100663840 TATTTAATAATAAT
1 TATTTAATTATAAT
100663854 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:100664063 original size:44 final size:45
Alignment explanation
Indices: 100664000--100664097 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
100663990 CTATTACACC
* *
100664000 TCTATTCCATTCAACCAAACACAAGA-TTACTATTACGCCTCTAT
1 TCTATTACATTCAACCAAACACAAGATTTACTATTACACCTCTAT
*** *
100664044 TCTATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTAT
1 TCTATTACATTCAACCAAACACAAGATTTACTATTACACCTCTAT
*
100664089 TCCATTACA
1 TCTATTACA
100664098 CCTCTAATCC
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 22 0.48
45 24 0.52
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.35
Consensus pattern (45 bp):
TCTATTACATTCAACCAAACACAAGATTTACTATTACACCTCTAT
Found at i:100664096 original size:45 final size:44
Alignment explanation
Indices: 100663988--100664097 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 44
100663978 TTTTCCATTA
100663988 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * * ***
100664027 TACTATTACGCCTCTATTCTATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
100664072 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
100664098 CCTCTAATCC
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
39 16 0.29
44 16 0.29
45 24 0.43
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:100664097 original size:16 final size:16
Alignment explanation
Indices: 100664076--100664145 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
100664066 TTGATTTGCT
*
100664076 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
100664092 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
100664108 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
* *
100664124 AATACAGCTCTAATCC
1 ATTACACCTCTAATCC
*
100664140 AATACA
1 ATTACA
100664146 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.34, C:0.34, G:0.01, T:0.30
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:100668877 original size:18 final size:18
Alignment explanation
Indices: 100668854--100668890 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
100668844 TGTTCATTTG
100668854 ACTGAATTAACCAAATTA
1 ACTGAATTAACCAAATTA
100668872 ACTGAATTAACCAAATTA
1 ACTGAATTAACCAAATTA
100668890 A
1 A
100668891 AACCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.27
Consensus pattern (18 bp):
ACTGAATTAACCAAATTA
Found at i:100679146 original size:30 final size:31
Alignment explanation
Indices: 100679112--100679169 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
100679102 TCTTCAAGGT
100679112 TAAAATTTGCA-A-TTAATCCCTATACTTTGA
1 TAAAATTTG-ATACTTAATCCCTATACTTTGA
*
100679142 TAAAATTTGATACTTAATCTCTATACTT
1 TAAAATTTGATACTTAATCCCTATACTT
100679170 AAAAAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 1 0.04
30 10 0.40
31 14 0.56
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (31 bp):
TAAAATTTGATACTTAATCCCTATACTTTGA
Found at i:100686794 original size:31 final size:31
Alignment explanation
Indices: 100686731--100686795 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
100686721 TCATTAAACC
* *
100686731 ATTCGAAAGTTTTCATTTAAGCCCTTGAGCT
1 ATTCGAAAGTTTTCATATAAGCCATTGAGCT
* *
100686762 ATTCGAAAG-TTTCTATATAAGTCATTGGGCT
1 ATTCGAAAGTTTTC-ATATAAGCCATTGAGCT
100686793 ATT
1 ATT
100686796 AAATTTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 4 0.14
31 25 0.86
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (31 bp):
ATTCGAAAGTTTTCATATAAGCCATTGAGCT
Found at i:100689909 original size:27 final size:26
Alignment explanation
Indices: 100689866--100689933 Score: 120
Period size: 26 Copynumber: 2.6 Consensus size: 26
100689856 ATAAAGCATA
100689866 TTGCATTTTTAAGAAAAAGATTCGAGT
1 TTGC-TTTTTAAGAAAAAGATTCGAGT
100689893 TTGCTTTTTAAGAAAAAGATTCGAGT
1 TTGCTTTTTAAGAAAAAGATTCGAGT
100689919 TTGCTTTTTAA-AAAA
1 TTGCTTTTTAAGAAAA
100689934 CGATATTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 4 0.10
26 33 0.80
27 4 0.10
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (26 bp):
TTGCTTTTTAAGAAAAAGATTCGAGT
Found at i:100699692 original size:10 final size:10
Alignment explanation
Indices: 100699677--100699706 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
100699667 CTATTTATGT
100699677 TTTTAAAATA
1 TTTTAAAATA
100699687 TTTTAAAATA
1 TTTTAAAATA
100699697 TTTTAAAATA
1 TTTTAAAATA
100699707 ATAAATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTTTAAAATA
Found at i:100700048 original size:6 final size:6
Alignment explanation
Indices: 100700037--100700075 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
100700027 TCTGTTTTTT
* *
100700037 TAATTA TAATTA TAATTA TAATTAA TTATTA TATTTA TA
1 TAATTA TAATTA TAATTA TAATT-A TAATTA TAATTA TA
100700076 TATTCATTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TAATTA
Found at i:100701178 original size:27 final size:28
Alignment explanation
Indices: 100701139--100701192 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
100701129 TTTTATTTTA
* *
100701139 ATTTTTATAATTAAAT-TTAAATAAAAT
1 ATTTTAATAATTAAATAATAAATAAAAT
*
100701166 ATTTTAATCATTAAATAATAAATAAAA
1 ATTTTAATAATTAAATAATAAATAAAA
100701193 ATATAAGCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (28 bp):
ATTTTAATAATTAAATAATAAATAAAAT
Found at i:100703169 original size:17 final size:17
Alignment explanation
Indices: 100703147--100703180 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
100703137 TAAATCTAAT
*
100703147 GTACAAAAATTATTTTA
1 GTACAAAAATTAATTTA
100703164 GTACAAAAATTAATTTA
1 GTACAAAAATTAATTTA
100703181 TTCATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (17 bp):
GTACAAAAATTAATTTA
Found at i:100707142 original size:69 final size:69
Alignment explanation
Indices: 100707031--100707169 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
100707021 TTAATAAGAG
100707031 ATAAGGTTCTTATAATTACCAACACTACCTTCCCTAATCAATTAGCTTCCTAATCCTACCACATA
1 ATAAGGTTCTTATAATTACCAACACTACCTTCCCTAATCAATTAGCTTCCTAATCCTACCACATA
100707096 TTTC
66 TTTC
100707100 ATAAGGTTCTTATAATTACCAACACTACCTTCCCTAATCAATTAGCTTCCTAATCCTACCACATA
1 ATAAGGTTCTTATAATTACCAACACTACCTTCCCTAATCAATTAGCTTCCTAATCCTACCACATA
100707165 TTTC
66 TTTC
100707169 A
1 A
100707170 GCATTCACTA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.32, C:0.29, G:0.04, T:0.35
Consensus pattern (69 bp):
ATAAGGTTCTTATAATTACCAACACTACCTTCCCTAATCAATTAGCTTCCTAATCCTACCACATA
TTTC
Found at i:100712274 original size:15 final size:15
Alignment explanation
Indices: 100712254--100712283 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
100712244 TATTTTTTTT
*
100712254 ATATTAGGATAATTA
1 ATATTAAGATAATTA
100712269 ATATTAAGATAATTA
1 ATATTAAGATAATTA
100712284 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:100712327 original size:10 final size:10
Alignment explanation
Indices: 100712312--100712339 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
100712302 AGGATTTAAT
100712312 TTTAATTATC
1 TTTAATTATC
100712322 TTTAATTATC
1 TTTAATTATC
100712332 TTTAATTA
1 TTTAATTA
100712340 AATGTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTAATTATC
Found at i:100721184 original size:38 final size:38
Alignment explanation
Indices: 100721133--100721210 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 38
100721123 AAAACGATAA
* *
100721133 CTCTTTTCACTTCACGGGCTACTATGGTAATGCTGACC
1 CTCTTTTCACTTCACGGGCTACTATGGGAATACTGACC
**
100721171 CTCTTTTCACTTCACGGGCTTTTATGGGAATACTGACC
1 CTCTTTTCACTTCACGGGCTACTATGGGAATACTGACC
100721209 CT
1 CT
100721211 AATAAAAGAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (38 bp):
CTCTTTTCACTTCACGGGCTACTATGGGAATACTGACC
Found at i:100727570 original size:83 final size:83
Alignment explanation
Indices: 100727450--100728051 Score: 956
Period size: 83 Copynumber: 7.2 Consensus size: 83
100727440 TCGATTTGTG
* * * *
100727450 AGGATGCCAAAATCAGT-TTGAGTTTGTTTTGAGAACATTCGAGAGTCATATCTACTACT-TCCT
1 AGGATGCC-AAATCA-TCTTGAGTCTG-TTTGAGAACATTTGAGAGTCATATCTGC-AATATCCT
100727513 CGATTTGTTCCTTGTAAGCACA
62 CGATTTGTTCCTTGTAAGCACA
*
100727535 AGGATGCCAAATTATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
1 AGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
100727600 TTGTTCCTTGTAAGCACA
66 TTGTTCCTTGTAAGCACA
*
100727618 AGGATGCCAAATTATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
1 AGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
100727683 TTGTTCCTTGTAAGCACA
66 TTGTTCCTTGTAAGCACA
* *
100727701 AGGATGCCAAATCATTTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGAT
1 AGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
100727766 TTGTTCCTTGTAAGCACA
66 TTGTTCCTTGTAAGCACA
* * *
100727784 AGGATGCCAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGAT
1 AGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
*
100727849 TTGTTCCTTTTAAGCACA
66 TTGTTCCTTGTAAGCACA
* * * *
100727867 AGGATACCAAACCATCTTGAGTCTGTTTGAGAATATTTGAGAGTTATATCTGCAATATCCTCGAT
1 AGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
100727932 TTGTTCCTTGTAAGCACA
66 TTGTTCCTTGTAAGCACA
* * *
100727950 GGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCTTCGAT
1 AGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
*
100728015 TTGTTCCTTGTAAACACA
66 TTGTTCCTTGTAAGCACA
* *
100728033 AGAATACCAAATCATCTTG
1 AGGATGCCAAATCATCTTG
100728052 GATCTGCTTC
Statistics
Matches: 486, Mismatches: 29, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
82 2 0.00
83 463 0.95
84 13 0.03
85 8 0.02
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (83 bp):
AGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGAT
TTGTTCCTTGTAAGCACA
Found at i:100739480 original size:21 final size:21
Alignment explanation
Indices: 100739455--100739495 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
100739445 TACTAGGTAG
100739455 ATAAAAAATGAATAC-TACGAT
1 ATAAAAAAT-AATACATACGAT
*
100739476 ATAAAGAATAATACATACGA
1 ATAAAAAATAATACATACGA
100739496 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAAAAAATAATACATACGAT
Found at i:100740274 original size:22 final size:19
Alignment explanation
Indices: 100740231--100740377 Score: 58
Period size: 19 Copynumber: 7.6 Consensus size: 19
100740221 ATTTAAGGAA
*
100740231 AATAATATATATAATAAGT
1 AATAATATATATAATAAAT
*
100740250 AATAATAATATATAATTAA-
1 AATAAT-ATATATAATAAAT
*
100740269 AATAATACT-CATAATAAAAT
1 AATAATA-TATATAAT-AAAT
*
100740289 AATTTTATAATATATAATATAA-
1 AA--TAAT-ATATATAATA-AAT
* * *
100740311 AAGTAAAAT-TAAAATAAACA
1 AA-TAATATATATAATAAA-T
*
100740331 AATAATA-ATAT-ATAGAT
1 AATAATATATATAATAAAT
*
100740348 AA-ATATATATAGAATAATAT
1 AATA-ATATATATAATAA-AT
100740368 AATAA-ATATA
1 AATAATATATA
100740378 GGACTAAATT
Statistics
Matches: 95, Mismatches: 16, Indels: 34
0.66 0.11 0.23
Matches are distributed among these distances:
16 1 0.01
17 5 0.05
18 15 0.16
19 35 0.37
20 21 0.22
21 3 0.03
22 7 0.07
23 8 0.08
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (19 bp):
AATAATATATATAATAAAT
Found at i:100740288 original size:17 final size:16
Alignment explanation
Indices: 100740234--100740291 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 16
100740224 TAAGGAAAAT
*
100740234 AATATATATAATAAGTAA
1 AATA-ATAT-ATAATTAA
100740252 TAATAATATATAATTAA
1 -AATAATATATAATTAA
100740269 AATAATACTCATAA-TAA
1 AATAATA-T-ATAATTAA
100740286 AATAAT
1 AATAAT
100740292 TTTATAATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
16 7 0.19
17 17 0.47
18 8 0.22
19 4 0.11
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (16 bp):
AATAATATATAATTAA
Found at i:100740349 original size:14 final size:16
Alignment explanation
Indices: 100740331--100740368 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
100740321 AAAATAAACA
100740331 AATAATA-ATATATAG
1 AATAATATATATATAG
100740346 -ATAA-ATATATATAG
1 AATAATATATATATAG
100740360 AATAATATA
1 AATAATATA
100740369 ATAAATATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
13 1 0.05
14 12 0.60
15 4 0.20
16 3 0.15
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (16 bp):
AATAATATATATATAG
Found at i:100740354 original size:12 final size:11
Alignment explanation
Indices: 100740332--100740377 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
100740322 AAATAAACAA
100740332 ATAAT-AATAT
1 ATAATAAATAT
100740342 ATAGATAAATAT
1 ATA-ATAAATAT
100740354 AT-ATAGAATAAT
1 ATAATA-AAT-AT
100740366 ATAATAAATAT
1 ATAATAAATAT
100740377 A
1 A
100740378 GGACTAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
10 6 0.19
11 8 0.26
12 14 0.45
13 3 0.10
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (11 bp):
ATAATAAATAT
Found at i:100743132 original size:51 final size:51
Alignment explanation
Indices: 100743060--100743351 Score: 324
Period size: 50 Copynumber: 5.7 Consensus size: 51
100743050 ACATGCCAAA
**
100743060 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATAGGTGCCCAT
* * *
100743111 GCCATGTCCCAGACATGGTCTTATA-GGGACCTCTCGT-CTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATAGGTGCCCAT
* * *
100743160 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGA---T-AGG-TGCCCAT
**
100743216 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATAGGTGCCCAT
* * * * * * *
100743267 GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCAT-CTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATAGGTGCCCAT
*
100743317 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
100743352 TTACCCAAAT
Statistics
Matches: 206, Mismatches: 25, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
48 1 0.00
49 40 0.19
50 59 0.29
51 58 0.28
52 2 0.01
54 2 0.01
55 2 0.01
56 35 0.17
57 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.27
Consensus pattern (51 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATAGGTGCCCAT
Found at i:100743276 original size:107 final size:102
Alignment explanation
Indices: 100743060--100743348 Score: 358
Period size: 107 Copynumber: 2.8 Consensus size: 102
100743050 ACATGCCAAA
* ** *
100743060 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGA--TGGTGCCCATGCCATGTCCCAG
1 GCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTC-TGATCTGGTGCCAATGCCATGTCCCAG
* *
100743123 ACATGGTCTTATA-GGGA-CCTCTCGTCTCGGTGCCCAT
64 ACATGGTCTTACATGGGATCCTCTCGTATCGGTGCCCAT
100743160 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGCCAATGCCATGTCC
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC-TGATC-T--GG-TGCCAATGCCATGTCC
**
100743225 CAGACATGGTCTTACATGGGATGTTCTCGTGAT-GGTGCCCAT
61 CAGACATGGTCTTACATGGGATCCTCTCGT-ATCGGTGCCCAT
* *
100743267 GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTC--ATCTCGGTGCCAACGCCATGTCCCAGA
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCTGATCT-GGTGCCAATGCCATGTCCCAGA
100743330 CATGGTCTTACATGGGATC
65 CATGGTCTTACATGGGATC
100743349 TCTTTACCCA
Statistics
Matches: 167, Mismatches: 13, Indels: 17
0.85 0.07 0.09
Matches are distributed among these distances:
99 7 0.04
100 29 0.17
101 37 0.22
102 3 0.02
103 1 0.01
104 5 0.03
105 30 0.18
106 4 0.02
107 50 0.30
108 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.27
Consensus pattern (102 bp):
GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCTGATCTGGTGCCAATGCCATGTCCCAGAC
ATGGTCTTACATGGGATCCTCTCGTATCGGTGCCCAT
Found at i:100743467 original size:13 final size:13
Alignment explanation
Indices: 100743446--100743477 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
100743436 GCTTGGATCA
*
100743446 TCATCAAATAAAT
1 TCATAAAATAAAT
100743459 TCATAAAATAAAT
1 TCATAAAATAAAT
100743472 TCATAA
1 TCATAA
100743478 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:100744526 original size:40 final size:39
Alignment explanation
Indices: 100744453--100744546 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 39
100744443 TCTTTCTTTC
* *
100744453 TTTCTTTCCTTCCTTCCTTCTCTGTTTCGTTTGCTCTCTG
1 TTTCTTT-CTTTCTCCCTTCTCTGTTTCGTTTGCTCTCTG
*
100744493 TTTCTTTCTTTCTCCCTTCTCTGTTTTGTTTTGCTCTCTG
1 TTTCTTTCTTTCTCCCTTCTCTGTTTCG-TTTGCTCTCTG
100744533 TTTCTTTTCTTTCT
1 TTTC-TTTCTTTCT
100744547 TTCTTTGTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
39 18 0.37
40 22 0.45
41 9 0.18
ACGTcount: A:0.00, C:0.29, G:0.09, T:0.63
Consensus pattern (39 bp):
TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTGCTCTCTG
Found at i:100748902 original size:32 final size:32
Alignment explanation
Indices: 100748866--100748932 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
100748856 ATTGTAAAAG
*
100748866 TAAAATTATGGAAAAATATAAAATTTTTATGA
1 TAAAATTATGAAAAAATATAAAATTTTTATGA
*
100748898 TAAAATTATGAAAAAATATGAAATTTTTATGA
1 TAAAATTATGAAAAAATATAAAATTTTTATGA
100748930 TAA
1 TAA
100748933 CAATGACTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (32 bp):
TAAAATTATGAAAAAATATAAAATTTTTATGA
Found at i:100762739 original size:21 final size:23
Alignment explanation
Indices: 100762692--100762745 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
100762682 CATTCAAGAT
**
100762692 AAAATAATATATAAAACCCTTTA
1 AAAATAATATATAAAACCAATTA
*
100762715 AAAATAATATAT-AAA-CAATTC
1 AAAATAATATATAAAACCAATTA
100762736 AAAAT-ATATA
1 AAAATAATATA
100762746 ATGTGTGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 8 0.29
22 3 0.11
23 12 0.43
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (23 bp):
AAAATAATATATAAAACCAATTA
Found at i:100762739 original size:22 final size:23
Alignment explanation
Indices: 100762692--100762739 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
100762682 CATTCAAGAT
** *
100762692 AAAATAATATATAAAACCCTTTA
1 AAAATAATATATAAAACAATTCA
100762715 AAAATAATATAT-AAACAATTCA
1 AAAATAATATATAAAACAATTCA
100762737 AAA
1 AAA
100762740 TATATAATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAATAATATATAAAACAATTCA
Found at i:100762979 original size:15 final size:15
Alignment explanation
Indices: 100762955--100763000 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
100762945 ATATAAATAG
*
100762955 AAATAAAAATATAAT
1 AAATAGAAATATAAT
100762970 AAATAGAAATATAAT
1 AAATAGAAATATAAT
100762985 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
100763001 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:100763003 original size:44 final size:44
Alignment explanation
Indices: 100762949--100763035 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
100762939 ATTTGTATAT
100762949 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
100762993 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
100763036 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:100763020 original size:15 final size:14
Alignment explanation
Indices: 100762947--100763033 Score: 61
Period size: 15 Copynumber: 6.0 Consensus size: 14
100762937 ATATTTGTAT
*
100762947 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
100762960 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
100762976 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
100762990 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
100763005 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
100763020 ATAAATAATAATAG
1 ATAAATAAAAATAG
100763034 TATTAGAATA
Statistics
Matches: 60, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
13 3 0.05
14 20 0.33
15 34 0.57
16 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:100764762 original size:19 final size:19
Alignment explanation
Indices: 100764717--100764764 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
100764707 ATTTAATCAT
**
100764717 GATTTTAAAAAATTTTAAA
1 GATTTTAAAAAATCCTAAA
* * *
100764736 AATATTAAAAAATCCTATA
1 GATTTTAAAAAATCCTAAA
100764755 GATTTTAAAA
1 GATTTTAAAA
100764765 TTCGAATTTA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (19 bp):
GATTTTAAAAAATCCTAAA
Found at i:100770356 original size:31 final size:31
Alignment explanation
Indices: 100770319--100770379 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
100770309 ATTTGGTTAA
* *
100770319 TAAACTATTCGAAAGTTTTTGTTTAAGTCAC
1 TAAACTATTCAAAAGTTTTTATTTAAGTCAC
*
100770350 TAAACTATTTAAAAGTTTTTATTTAAGTCA
1 TAAACTATTCAAAAGTTTTTATTTAAGTCA
100770380 TTTGTTGTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (31 bp):
TAAACTATTCAAAAGTTTTTATTTAAGTCAC
Found at i:100770924 original size:2 final size:2
Alignment explanation
Indices: 100770917--100770949 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
100770907 TTACCTGAAT
*
100770917 TA TA TA TA TA AA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100770950 AAAGTAGACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:100772084 original size:29 final size:29
Alignment explanation
Indices: 100772042--100772099 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
100772032 GTGGCTCGAG
100772042 TGCTAAAAGCTAAATATTTTGCAAACAAA
1 TGCTAAAAGCTAAATATTTTGCAAACAAA
100772071 TGCTAAAAGCTAAATATTTTGCAAACAAA
1 TGCTAAAAGCTAAATATTTTGCAAACAAA
100772100 GATTTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (29 bp):
TGCTAAAAGCTAAATATTTTGCAAACAAA
Found at i:100779196 original size:16 final size:17
Alignment explanation
Indices: 100779175--100779210 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
100779165 TTTGGTACTG
100779175 TTCTGATTT-TTTTTAT
1 TTCTGATTTGTTTTTAT
100779191 TTCTGATTTGTTTTTAT
1 TTCTGATTTGTTTTTAT
100779208 TTC
1 TTC
100779211 ACTTTTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.11, C:0.08, G:0.08, T:0.72
Consensus pattern (17 bp):
TTCTGATTTGTTTTTAT
Found at i:100780569 original size:6 final size:6
Alignment explanation
Indices: 100780558--100780595 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
100780548 AGTTTATTTG
* *
100780558 TTTTAT TTTTA- TTTTAT TTTTAT GTTTAT TGTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
100780596 CTTAGACTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:100780580 original size:17 final size:18
Alignment explanation
Indices: 100780558--100780595 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
100780548 AGTTTATTTG
*
100780558 TTTTATTTTTATT-TTAT
1 TTTTATGTTTATTGTTAT
100780575 TTTTATGTTTATTGTTAT
1 TTTTATGTTTATTGTTAT
100780593 TTT
1 TTT
100780596 CTTAGACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTATGTTTATTGTTAT
Found at i:100780585 original size:12 final size:11
Alignment explanation
Indices: 100780558--100780595 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
100780548 AGTTTATTTG
100780558 TTTTATTTTTA
1 TTTTATTTTTA
100780569 TTTTATTTTTA
1 TTTTATTTTTA
*
100780580 TGTTTATTGTTA
1 T-TTTATTTTTA
100780592 TTTT
1 TTTT
100780596 CTTAGACTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:100780640 original size:25 final size:25
Alignment explanation
Indices: 100780577--100780640 Score: 60
Period size: 25 Copynumber: 2.5 Consensus size: 25
100780567 TATTTTATTT
* * *
100780577 TTATGTTTATTGTTATTTTCTTAGAC
1 TTATTTTTATT-TTATCTTCTTACAC
100780603 TTATTTCTT-TTTTATCTT-TTACAC
1 TTATTT-TTATTTTATCTTCTTACAC
100780627 TATATTTTTATTTT
1 T-TATTTTTATTTT
100780641 TTATGGTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 8 0.25
25 15 0.47
26 7 0.22
27 2 0.06
ACGTcount: A:0.19, C:0.09, G:0.05, T:0.67
Consensus pattern (25 bp):
TTATTTTTATTTTATCTTCTTACAC
Found at i:100783163 original size:29 final size:29
Alignment explanation
Indices: 100783121--100783181 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
100783111 GAAAGAGATT
*
100783121 TTAATTAATCAACCTAAAGTTAGTTGTTC
1 TTAATTAATCAACCTAAAGTCAGTTGTTC
*
100783150 TTAATTAATCAACCTAGAGTCAGTTGTTC
1 TTAATTAATCAACCTAAAGTCAGTTGTTC
100783179 TTA
1 TTA
100783182 CACTTGAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (29 bp):
TTAATTAATCAACCTAAAGTCAGTTGTTC
Found at i:100785674 original size:29 final size:30
Alignment explanation
Indices: 100785628--100785684 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
100785618 GCAATGTTAT
100785628 ACATGAACTTTAATTTTG-TGCAATTTTGA
1 ACATGAACTTTAATTTTGATGCAATTTTGA
* *
100785657 ACATGATACTTTGA-TTTGATTCAATTTT
1 ACATGA-ACTTTAATTTTGATGCAATTTT
100785685 TTTGATCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (30 bp):
ACATGAACTTTAATTTTGATGCAATTTTGA
Found at i:100788803 original size:17 final size:16
Alignment explanation
Indices: 100788759--100788803 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
100788749 TAAACAAATT
100788759 ATTAGTAAGATATTTGA
1 ATTAGTAA-ATATTTGA
* *
100788776 ATCATTAAATATTTGA
1 ATTAGTAAATATTTGA
100788792 ATTTAGTAAATA
1 A-TTAGTAAATA
100788804 AAATAAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.42
Consensus pattern (16 bp):
ATTAGTAAATATTTGA
Found at i:100798710 original size:9 final size:9
Alignment explanation
Indices: 100798696--100798720 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
100798686 TTTTAAAAAT
100798696 TTAAAATCA
1 TTAAAATCA
100798705 TTAAAATCA
1 TTAAAATCA
100798714 TTAAAAT
1 TTAAAAT
100798721 TTCTAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (9 bp):
TTAAAATCA
Found at i:100805583 original size:4 final size:4
Alignment explanation
Indices: 100805576--100805606 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
100805566 TCTTTTTATT
100805576 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
100805607 TTATTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:100806783 original size:118 final size:118
Alignment explanation
Indices: 100806575--100806805 Score: 372
Period size: 118 Copynumber: 2.0 Consensus size: 118
100806565 TGTTTTCCAT
* *
100806575 GGTTATGAGTACAGCTTATATCGTAACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTAACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
* *
100806640 CTACTTCTTGTCAAAAGGTTGTGTGACGTGATAAGTAAAATTCCGCTAGTCGA
66 CTACTTCGTGTCAAAAGGTTGTGTGACGTGATAAGTAAAACTCCGCTAGTCGA
** *
100806693 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTAACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
* **
100806758 CTACTTCGTGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTA
66 CTACTTCGTGTCAAAAGGTTGTGTGACGTGATAAGTAAAACTCCGCTA
100806806 ACCGAAAATA
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
118 103 1.00
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.32
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTAACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGTGTCAAAAGGTTGTGTGACGTGATAAGTAAAACTCCGCTAGTCGA
Found at i:100806938 original size:21 final size:20
Alignment explanation
Indices: 100806909--100806948 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
100806899 TATTCCTAAG
* *
100806909 TAAATAAATAATAATAAAATT
1 TAAAAAAATAA-AAAAAAATT
100806930 TAAAAAAATAAAAAAAAAT
1 TAAAAAAATAAAAAAAAAT
100806949 CAAAAAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (20 bp):
TAAAAAAATAAAAAAAAATT
Found at i:100809848 original size:29 final size:29
Alignment explanation
Indices: 100809787--100809849 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
100809777 CTTTTACTTT
* * * *
100809787 TTTTTTTTTACTTTTTATTAACTTTTGTC
1 TTTTTCTTTAATTTTTATTAACTTTTATA
* *
100809816 TTTTTCTTTAATTTTTTTTAAGTTTTATA
1 TTTTTCTTTAATTTTTATTAACTTTTATA
100809845 TTTTT
1 TTTTT
100809850 TCTTATTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.75
Consensus pattern (29 bp):
TTTTTCTTTAATTTTTATTAACTTTTATA
Found at i:100809863 original size:29 final size:30
Alignment explanation
Indices: 100809816--100809893 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 30
100809806 AACTTTTGTC
100809816 TTTTTCTTTAATTTT-TTTTAAGTTT-TATAT
1 TTTTTC-TT-ATTTTATTTTAAGTTTATATAT
*
100809846 TTTTTCTTATTTTATTTT--GTTTATTTAT
1 TTTTTCTTATTTTATTTTAAGTTTATATAT
*
100809874 TTTATTCTTA-TTAATTTTAA
1 TTT-TTCTTATTTTATTTTAA
100809894 AAAATTTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
27 4 0.10
28 19 0.46
29 12 0.29
30 6 0.15
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.73
Consensus pattern (30 bp):
TTTTTCTTATTTTATTTTAAGTTTATATAT
Found at i:100809970 original size:23 final size:24
Alignment explanation
Indices: 100809920--100809963 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
100809910 ATTTGAAATG
100809920 TTTTATAATATATATTTTTTAAAA
1 TTTTATAATATATATTTTTTAAAA
100809944 TTTTA-AATAT-TATTTTTTAA
1 TTTTATAATATATATTTTTTAA
100809964 TTATTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 5 0.25
24 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTATAATATATATTTTTTAAAA
Found at i:100809977 original size:32 final size:33
Alignment explanation
Indices: 100809932--100809993 Score: 108
Period size: 32 Copynumber: 1.9 Consensus size: 33
100809922 TTATAATATA
100809932 TATTTTTTAAAATTTTAAATATTATTTTTTAAT
1 TATTTTTTAAAATTTTAAATATTATTTTTTAAT
*
100809965 TATTTTTT-AAATTTTGAATATTATTTTTT
1 TATTTTTTAAAATTTTAAATATTATTTTTT
100809994 TAAATATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 20 0.71
33 8 0.29
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (33 bp):
TATTTTTTAAAATTTTAAATATTATTTTTTAAT
Found at i:100809989 original size:21 final size:21
Alignment explanation
Indices: 100809963--100810031 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
100809953 TTATTTTTTA
* *
100809963 ATTATTTTTTAAATTTTGAAT
1 ATTATTTTTTAAATATTAAAT
100809984 ATTATTTTTTTAAATATTAAAT
1 ATTA-TTTTTTAAATATTAAAT
* *
100810006 ATATATTTTTAATAATATAAAAT
1 AT-TATTTTTTA-AATATTAAAT
100810029 ATT
1 ATT
100810032 TAAATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.10
22 24 0.59
23 13 0.32
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (21 bp):
ATTATTTTTTAAATATTAAAT
Found at i:100809994 original size:33 final size:33
Alignment explanation
Indices: 100809931--100810001 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
100809921 TTTATAATAT
100809931 ATATTTTTTAAAATTTTAAATATTATTTTTTAA
1 ATATTTTTTAAAATTTTAAATATTATTTTTTAA
* *
100809964 TTATTTTTT-AAATTTTGAATATTATTTTTTTAA
1 ATATTTTTTAAAATTTTAAATATTA-TTTTTTAA
100809997 ATATT
1 ATATT
100810002 AAATATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 14 0.41
33 20 0.59
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.63
Consensus pattern (33 bp):
ATATTTTTTAAAATTTTAAATATTATTTTTTAA
Found at i:100810639 original size:23 final size:24
Alignment explanation
Indices: 100810611--100810658 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 24
100810601 TATAAGACAT
*
100810611 AATTTAAAAAAATA-ATATT-TAA
1 AATTTTAAAAAATATATATTATAA
100810633 AATTTTAAAAAATATATATTATAA
1 AATTTTAAAAAATATATATTATAA
100810657 AA
1 AA
100810659 CTCAAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.57
23 5 0.22
24 5 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AATTTTAAAAAATATATATTATAA
Found at i:100810768 original size:18 final size:18
Alignment explanation
Indices: 100810747--100810793 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
100810737 AATATATAAC
100810747 TTAAAAAAAGAGA-AAAAA
1 TTAAAAAAA-AGACAAAAA
*
100810765 TTAAAGAAAAAGACAAAAG
1 TTAAA-AAAAAGACAAAAA
100810784 TTAAAAAAAA
1 TTAAAAAAAA
100810794 AAGTAAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.13
Consensus pattern (18 bp):
TTAAAAAAAAGACAAAAA
Found at i:100810803 original size:20 final size:18
Alignment explanation
Indices: 100810747--100810794 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
100810737 AATATATAAC
* *
100810747 TTAAAAAAAGAGAAAAAA
1 TTAAAAAAAAAGAAAAAG
*
100810765 TTAAAGAAAAAGACAAAAG
1 TTAAAAAAAAAGA-AAAAG
100810784 TTAAAAAAAAA
1 TTAAAAAAAAA
100810795 AGTAAAAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.12
Consensus pattern (18 bp):
TTAAAAAAAAAGAAAAAG
Found at i:100811394 original size:18 final size:18
Alignment explanation
Indices: 100811371--100811406 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
100811361 ATACACCCCC
100811371 AACTAAATATTATAAAGT
1 AACTAAATATTATAAAGT
100811389 AACTAAATATTATAAAGT
1 AACTAAATATTATAAAGT
100811407 GTGTTGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (18 bp):
AACTAAATATTATAAAGT
Found at i:100812594 original size:54 final size:55
Alignment explanation
Indices: 100812528--100812635 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
100812518 ACAAAAGTGC
* * *
100812528 AAAAAAAAAAAATTAAA-TTACACAATGTGTAAATGTTAAGAGTTAATTTTTTTT
1 AAAAAAAAAAAATTAAATTTACACAATGTATAAATATTAAGAGTTAAATTTTTTT
* ** *
100812582 AAAAAATAAAAATTAAATTTACATGATTTATAAATATTAAGAGTTAAATTTTTT
1 AAAAAAAAAAAATTAAATTTACACAATGTATAAATATTAAGAGTTAAATTTTTT
100812636 ATTATTCCAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 16 0.35
55 30 0.65
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (55 bp):
AAAAAAAAAAAATTAAATTTACACAATGTATAAATATTAAGAGTTAAATTTTTTT
Found at i:100813588 original size:25 final size:25
Alignment explanation
Indices: 100813555--100813602 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
100813545 CCAATTACTA
* *
100813555 TAATTTATTATAATAATAA-ATTATT
1 TAATATATTAAAAT-ATAACATTATT
100813580 TAATATATTAAAATATAACATTA
1 TAATATATTAAAATATAACATTA
100813603 AAATTTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TAATATATTAAAATATAACATTATT
Found at i:100818676 original size:46 final size:46
Alignment explanation
Indices: 100818505--100818673 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
100818495 TGTAACCCGC
*
100818505 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-CGCTCGCAT
* ** * *
100818551 CCATAAGTGAACTCAAACTCAACTCAAC-AGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* *
100818600 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
100818643 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
100818674 TTCTGATGCC
Statistics
Matches: 99, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 8 0.08
46 73 0.74
47 10 0.10
48 1 0.01
49 3 0.03
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:100822097 original size:13 final size:13
Alignment explanation
Indices: 100822079--100822106 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
100822069 TGCTTCCTTT
100822079 TAGGTTATTGGTA
1 TAGGTTATTGGTA
100822092 TAGGTTATTGGTA
1 TAGGTTATTGGTA
100822105 TA
1 TA
100822107 CTAAATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (13 bp):
TAGGTTATTGGTA
Found at i:100822532 original size:10 final size:10
Alignment explanation
Indices: 100822504--100822553 Score: 50
Period size: 10 Copynumber: 4.8 Consensus size: 10
100822494 GGTCTCTCTC
100822504 TCAACAATAAT
1 TCAA-AATAAT
100822515 TGCAAAATAAT
1 T-CAAAATAAT
100822526 TCAAAATAATTT
1 TCAAAATAA--T
100822538 TC-AAA-AAT
1 TCAAAATAAT
100822546 TCAAAATA
1 TCAAAATA
100822554 CTTTTTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
8 3 0.09
9 3 0.09
10 11 0.32
11 11 0.32
12 6 0.18
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.30
Consensus pattern (10 bp):
TCAAAATAAT
Found at i:100822533 original size:21 final size:20
Alignment explanation
Indices: 100822504--100822572 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
100822494 GGTCTCTCTC
100822504 TCAACAATAA-TTGCAAAATAAT
1 TCAA-AATAATTTGC-AAA-AAT
*
100822526 TCAAAATAATTTTCAAAAAT
1 TCAAAATAATTTGCAAAAAT
* **
100822546 TCAAAATACTTT-TTAAAAT
1 TCAAAATAATTTGCAAAAAT
100822565 TCAAAATA
1 TCAAAATA
100822573 GTTATAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 13 0.31
20 14 0.33
21 8 0.19
22 7 0.17
ACGTcount: A:0.54, C:0.12, G:0.01, T:0.33
Consensus pattern (20 bp):
TCAAAATAATTTGCAAAAAT
Found at i:100822565 original size:19 final size:19
Alignment explanation
Indices: 100822523--100822591 Score: 84
Period size: 19 Copynumber: 3.5 Consensus size: 19
100822513 ATTGCAAAAT
100822523 AATTCAAAATAATTTTCAAA
1 AATTCAAAATAATTTT-AAA
* *
100822543 AATTCAAAATACTTTTTAA
1 AATTCAAAATAATTTTAAA
* *
100822562 AATTCAAAATAGTTATAAA
1 AATTCAAAATAATTTTAAA
100822581 AATTCCAAAAT
1 AATT-CAAAAT
100822592 TTTTATTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
19 22 0.51
20 21 0.49
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.35
Consensus pattern (19 bp):
AATTCAAAATAATTTTAAA
Found at i:100822597 original size:20 final size:19
Alignment explanation
Indices: 100822540--100822597 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
100822530 AATAATTTTC
100822540 AAAAATTCAAAATACTTTT-T
1 AAAAATTCAAAAT--TTTTAT
**
100822560 -AAAATTCAAAATAGTTAT
1 AAAAATTCAAAATTTTTAT
100822578 AAAAATTCCAAAATTTTTAT
1 AAAAATT-CAAAATTTTTAT
100822598 TTTTTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 18 0.58
20 10 0.32
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATTTTTAT
Found at i:100822785 original size:16 final size:16
Alignment explanation
Indices: 100822764--100822794 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100822754 TTGAAGAAGT
100822764 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
100822780 TTTCAAATTTATATG
1 TTTCAAATATATATG
100822795 CTTTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:100823532 original size:10 final size:10
Alignment explanation
Indices: 100823517--100823566 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
100823507 TGGATTTAAC
100823517 ATTTATCTTT
1 ATTTATCTTT
100823527 ATTTATCTTT
1 ATTTATCTTT
*
100823537 AATTATCTTT
1 ATTTATCTTT
100823547 ATTTAT-TTGT
1 ATTTATCTT-T
*
100823557 ATTCATCTTT
1 ATTTATCTTT
100823567 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:100825101 original size:19 final size:20
Alignment explanation
Indices: 100825072--100825110 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
100825062 TTTGGACAAA
100825072 GGACTAAATCGTAATA-AATT
1 GGACTAAATCG-AATAGAATT
100825092 GGAC-AAATCGAATAGAATT
1 GGACTAAATCGAATAGAATT
100825111 AAGAACCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 10 0.56
20 4 0.22
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (20 bp):
GGACTAAATCGAATAGAATT
Found at i:100826512 original size:10 final size:10
Alignment explanation
Indices: 100826484--100826533 Score: 50
Period size: 10 Copynumber: 4.8 Consensus size: 10
100826474 GGTCTCTCTC
100826484 TCAACAATAAT
1 TCAA-AATAAT
100826495 TACAAAATAAT
1 T-CAAAATAAT
100826506 TCAAAATAATTT
1 TCAAAATAA--T
100826518 TC-AAA-AAT
1 TCAAAATAAT
100826526 TCAAAATA
1 TCAAAATA
100826534 CTTTTTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
8 3 0.09
9 3 0.09
10 11 0.32
11 11 0.32
12 6 0.18
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (10 bp):
TCAAAATAAT
Found at i:100826515 original size:21 final size:20
Alignment explanation
Indices: 100826484--100826571 Score: 65
Period size: 20 Copynumber: 4.3 Consensus size: 20
100826474 GGTCTCTCTC
100826484 TCAACAATAA-TTACAAAATAAT
1 TCAA-AATAATTTAC-AAA-AAT
*
100826506 TCAAAATAATTTTCAAAAAT
1 TCAAAATAATTTACAAAAAT
* **
100826526 TCAAAATACTTT-TTAAAAT
1 TCAAAATAATTTACAAAAAT
* *
100826545 TCAAAAT-AGTTATAAAAAT
1 TCAAAATAATTTACAAAAAT
100826564 TCCAAAAT
1 T-CAAAAT
100826572 TTTTATTTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
18 2 0.04
19 19 0.34
20 20 0.36
21 8 0.14
22 7 0.12
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.33
Consensus pattern (20 bp):
TCAAAATAATTTACAAAAAT
Found at i:100826545 original size:19 final size:19
Alignment explanation
Indices: 100826503--100826571 Score: 84
Period size: 19 Copynumber: 3.5 Consensus size: 19
100826493 ATTACAAAAT
100826503 AATTCAAAATAATTTTCAAA
1 AATTCAAAATAATTTT-AAA
* *
100826523 AATTCAAAATACTTTTTAA
1 AATTCAAAATAATTTTAAA
* *
100826542 AATTCAAAATAGTTATAAA
1 AATTCAAAATAATTTTAAA
100826561 AATTCCAAAAT
1 AATT-CAAAAT
100826572 TTTTATTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
19 22 0.51
20 21 0.49
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.35
Consensus pattern (19 bp):
AATTCAAAATAATTTTAAA
Found at i:100826577 original size:20 final size:19
Alignment explanation
Indices: 100826520--100826577 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
100826510 AATAATTTTC
100826520 AAAAATTCAAAATACTTTT-T
1 AAAAATTCAAAAT--TTTTAT
**
100826540 -AAAATTCAAAATAGTTAT
1 AAAAATTCAAAATTTTTAT
100826558 AAAAATTCCAAAATTTTTAT
1 AAAAATT-CAAAATTTTTAT
100826578 TTTTTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 18 0.58
20 10 0.32
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATTTTTAT
Found at i:100826621 original size:29 final size:28
Alignment explanation
Indices: 100826580--100826645 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
100826570 ATTTTTATTT
*
100826580 TTTAAAAATTATAAAAATTTCAAAAAAAA
1 TTTAAAAATTATAAAAAGTT-AAAAAAAA
*
100826609 TTTAATAAA-TATATAAAGTTAAAAAAAA
1 TTTAA-AAATTATAAAAAGTTAAAAAAAA
* *
100826637 GTAAAAAAT
1 TTTAAAAAT
100826646 CACTAGAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
27 3 0.10
28 11 0.35
29 14 0.45
30 3 0.10
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (28 bp):
TTTAAAAATTATAAAAAGTTAAAAAAAA
Found at i:100826942 original size:24 final size:24
Alignment explanation
Indices: 100826910--100826965 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
100826900 TGACTTGTCA
100826910 ACTCGATTAACTCGAAATTCTTTC
1 ACTCGATTAACTCGAAATTCTTTC
100826934 ACTCGATTAACTCGAAATTCTTTC
1 ACTCGATTAACTCGAAATTCTTTC
100826958 ACTCGATT
1 ACTCGATT
100826966 CTATTGAACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (24 bp):
ACTCGATTAACTCGAAATTCTTTC
Found at i:100829724 original size:20 final size:18
Alignment explanation
Indices: 100829690--100829726 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
100829680 GCAACTCATA
100829690 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
100829708 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
100829727 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:100833884 original size:27 final size:28
Alignment explanation
Indices: 100833843--100833911 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
100833833 TTTGTAATAT
*
100833843 ATATTGTCAAATGAGCATA-GTCTAGGCG
1 ATATTG-CCAATGAGCATAGGTCTAGGCG
* *
100833871 ATATTGCCAATGAGGATAGGTGTAGGCG
1 ATATTGCCAATGAGCATAGGTCTAGGCG
*
100833899 ATATTGGCAATGA
1 ATATTGCCAATGA
100833912 ATGCATTGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 10 0.28
28 26 0.72
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATTGCCAATGAGCATAGGTCTAGGCG
Found at i:100839687 original size:21 final size:21
Alignment explanation
Indices: 100839661--100839702 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
100839651 GTTACTCTTG
100839661 TAATTTAGTTCATTTTGAACT
1 TAATTTAGTTCATTTTGAACT
100839682 TAATTTAGTTCATTTTGAACT
1 TAATTTAGTTCATTTTGAACT
100839703 ATGTTTGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.52
Consensus pattern (21 bp):
TAATTTAGTTCATTTTGAACT
Found at i:100845170 original size:19 final size:20
Alignment explanation
Indices: 100845116--100845171 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
100845106 ATTGGGCATT
*
100845116 GCCCATATTAACACAGTTGG
1 GCCCATATTAAAACAGTTGG
*
100845136 GCCCAT-TTCAATACAGTT-G
1 GCCCATATT-AAAACAGTTGG
*
100845155 GCCCATAATAAAACAGT
1 GCCCATATTAAAACAGT
100845172 CTCATATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (20 bp):
GCCCATATTAAAACAGTTGG
Found at i:100845980 original size:9 final size:9
Alignment explanation
Indices: 100845968--100846010 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
100845958 TTCAAATCTC
100845968 TCAAAACCT
1 TCAAAACCT
100845977 TCAAAACCT
1 TCAAAACCT
*
100845986 TCAAAATCT
1 TCAAAACCT
*
100845995 CCTAAAACCT
1 TC-AAAACCT
100846005 TCAAAA
1 TCAAAA
100846011 GTATCATAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 22 0.76
10 7 0.24
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (9 bp):
TCAAAACCT
Found at i:100847677 original size:19 final size:19
Alignment explanation
Indices: 100847632--100847676 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
100847622 CAGTATAAAA
100847632 ATATGTTTAATATTATTAAT
1 ATAT-TTTAATATTATTAAT
100847652 ATATTTTAAT-TTATT-AT
1 ATATTTTAATATTATTAAT
100847669 ATAATTTT
1 AT-ATTTT
100847677 TTTCTTGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.17
18 10 0.42
19 6 0.25
20 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATATTTTAATATTATTAAT
Found at i:100850158 original size:37 final size:37
Alignment explanation
Indices: 100850098--100850202 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
100850088 TGTTAATTTC
*
100850098 AAGACTTATG-AATGTTTTTAATTATTTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
100850134 AAGACTTATGTAATGTTTTTAATTATGTAGTAATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
100850171 AAGACTTATGTAATATTTTTAATTATGTAGTG
1 AAGACTTATGTAATGTTTTTAATTATGTAGTG
100850203 TAGTGATTCA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 10 0.16
37 54 0.84
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:100850196 original size:17 final size:17
Alignment explanation
Indices: 100850139--100850199 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
100850129 ATTCAAAGAC
*
100850139 TTATGTAATGTTTTTAA
1 TTATGTAATATTTTTAA
* ***
100850156 TTATGTAGTAATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
100850175 CTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
100850193 TTATGTA
1 TTATGTA
100850200 GTGTAGTGAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 15 0.47
18 4 0.12
19 5 0.16
20 8 0.25
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.51
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:100850224 original size:9 final size:9
Alignment explanation
Indices: 100850210--100850332 Score: 167
Period size: 9 Copynumber: 13.7 Consensus size: 9
100850200 GTGTAGTGAT
100850210 TCAATTCGG
1 TCAATTCGG
100850219 TCAATTCGG
1 TCAATTCGG
*
100850228 TTAATTCGG
1 TCAATTCGG
100850237 TCAATTCGG
1 TCAATTCGG
100850246 TCAATTCGG
1 TCAATTCGG
100850255 TCAATTCGG
1 TCAATTCGG
100850264 TCAATTCGG
1 TCAATTCGG
*
100850273 TCAATTTGG
1 TCAATTCGG
100850282 TCAATTCGG
1 TCAATTCGG
*
100850291 TTAATTCGG
1 TCAATTCGG
*
100850300 TTAATTCGG
1 TCAATTCGG
* *
100850309 TTAATCCGGG
1 TCAATTC-GG
100850319 T-AATTCGG
1 TCAATTCGG
*
100850327 TTAATT
1 TCAATT
100850333 TTTAACCAAA
Statistics
Matches: 105, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
8 3 0.03
9 99 0.94
10 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (9 bp):
TCAATTCGG
Found at i:100868249 original size:10 final size:10
Alignment explanation
Indices: 100868229--100868259 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
100868219 ATTTGGTTCC
100868229 TTCTCTTTTTT
1 TTCT-TTTTTT
100868240 TTCTTTTTTT
1 TTCTTTTTTT
100868250 TTCTTTTTTT
1 TTCTTTTTTT
100868260 GGCCTTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 16 0.80
11 4 0.20
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:100870696 original size:20 final size:20
Alignment explanation
Indices: 100870671--100870720 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
100870661 TGGCTTAAAA
100870671 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
100870691 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
100870708 GTGGTAGTGGATT
1 TTGGTAGTGGATT
100870721 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:100875335 original size:20 final size:20
Alignment explanation
Indices: 100875310--100875359 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
100875300 TGGCTTAAAA
100875310 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
100875330 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
100875347 GTGGTAGTGGATT
1 TTGGTAGTGGATT
100875360 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:100881060 original size:38 final size:36
Alignment explanation
Indices: 100881018--100881090 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
100881008 ATATTTTGTC
* *
100881018 TCTTAGATTT-TTTTTCTTTTTTAAGTTTTATATTATTT
1 TCTTA-ATTTATTTTACTTGTTTAA--TTTATATTATTT
100881056 TCTTAATTTATTTTACTTGTTTAATTTATATTATT
1 TCTTAATTTATTTTACTTGTTTAATTTATATTATT
100881091 AATTTTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 11 0.34
37 4 0.12
38 17 0.53
ACGTcount: A:0.22, C:0.05, G:0.04, T:0.68
Consensus pattern (36 bp):
TCTTAATTTATTTTACTTGTTTAATTTATATTATTT
Found at i:100881065 original size:18 final size:17
Alignment explanation
Indices: 100881044--100881090 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
100881034 TTTTTTAAGT
*
100881044 TTTATATTATTTTCTTAA
1 TTTATATTATTGT-TTAA
*
100881062 TTTATTTTACTTGTTTAA
1 TTTATATTA-TTGTTTAA
100881080 TTTATATTATT
1 TTTATATTATT
100881091 AATTTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 2 0.08
18 20 0.80
19 3 0.12
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTATATTATTGTTTAA
Found at i:100881168 original size:23 final size:24
Alignment explanation
Indices: 100881080--100881173 Score: 67
Period size: 21 Copynumber: 4.1 Consensus size: 24
100881070 ACTTGTTTAA
* *
100881080 TTTATATTATTAATTTTAAAAAAAT
1 TTTATATTATT-ATTTTTAAAATAT
* * *
100881105 TGTA-A-TA-TATATTTAAAATGT
1 TTTATATTATTATTTTTAAAATAT
*
100881126 TTTATAATATT-TTTTT-AAAT-T
1 TTTATATTATTATTTTTAAAATAT
100881147 TTTA-ATTATTATTTTTAAAAATAT
1 TTTATATTATTATTTTT-AAAATAT
100881171 TTT
1 TTT
100881174 TTAACTTTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 15
0.70 0.10 0.19
Matches are distributed among these distances:
20 5 0.09
21 22 0.41
22 6 0.11
23 12 0.22
24 6 0.11
25 3 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTATATTATTATTTTTAAAATAT
Found at i:100881442 original size:13 final size:13
Alignment explanation
Indices: 100881391--100881445 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
100881381 AGATTTTGTC
100881391 TTTTCTTTATTTT-
1 TTTTC-TTATTTTA
*
100881404 TTTTCTTTTTTTA
1 TTTTCTTATTTTA
** *
100881417 AGTT-TTATATTA
1 TTTTCTTATTTTA
100881429 TTTTCTTATTTTA
1 TTTTCTTATTTTA
100881442 TTTT
1 TTTT
100881446 GTTTATTAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
12 14 0.44
13 18 0.56
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (13 bp):
TTTTCTTATTTTA
Found at i:100881459 original size:36 final size:38
Alignment explanation
Indices: 100881391--100881467 Score: 97
Period size: 36 Copynumber: 2.1 Consensus size: 38
100881381 AGATTTTGTC
* * *
100881391 TTTTCTTTATTTTTTTTCTTTTTTTAAGTTTTATATTA
1 TTTTCTTTATTTTTTTTCGTTTATTAAGTTTTATAATA
100881429 TTTTC-TTATTTTATTTT-GTTTATT-AGTTTTATAATA
1 TTTTCTTTATTTT-TTTTCGTTTATTAAGTTTTATAATA
100881465 TTT
1 TTT
100881468 GAAATGTATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 14 0.40
37 12 0.34
38 9 0.26
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.74
Consensus pattern (38 bp):
TTTTCTTTATTTTTTTTCGTTTATTAAGTTTTATAATA
Found at i:100881924 original size:29 final size:29
Alignment explanation
Indices: 100881892--100881965 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
100881882 TAAAAATTAT
100881892 AAAT-TTCAAAATTCTATGTAAAAT-TTAAA
1 AAATATTCAAAA-TC-ATGTAAAATATTAAA
* *
100881921 AAATATTTAAAATCATTTAAAATATTAAA
1 AAATATTCAAAATCATGTAAAATATTAAA
**
100881950 AAATATTTTAAATCAT
1 AAATATTCAAAATCAT
100881966 TTTAAATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 8 0.20
29 26 0.65
30 6 0.15
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.39
Consensus pattern (29 bp):
AAATATTCAAAATCATGTAAAATATTAAA
Done.