Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 309 of 316
Found at i:101335133 original size:21 final size:20
Alignment explanation
Indices: 101335107--101335198 Score: 64
Period size: 21 Copynumber: 4.5 Consensus size: 20
101335097 ATAAAAAATA
101335107 TATTTTTTATAAATTCTTTAC
1 TATTTTTTATAAATT-TTTAC
*
101335128 TATTTTTTATATAA--TTT-G
1 TATTTTTTATA-AATTTTTAC
** * *
101335146 TGGTTTTTATAATTTCTTTTC
1 TATTTTTTATAAATT-TTTAC
* *
101335167 TATTTTTAATAAATTTTTAA
1 TATTTTTTATAAATTTTTAC
101335187 TATTTTTCTATA
1 TATTTTT-TATA
101335199 CATTGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
17 1 0.02
18 9 0.17
19 3 0.06
20 13 0.25
21 25 0.47
22 2 0.04
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (20 bp):
TATTTTTTATAAATTTTTAC
Found at i:101335136 original size:39 final size:39
Alignment explanation
Indices: 101335092--101335179 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 39
101335082 TTTTTTAAAA
*
101335092 TTTTTATAAAAAATATATTTTTTATAAATTCTTTACTAT
1 TTTTTATAAAAAATATAGTTTTTATAAATTCTTTACTAT
* ** * * * *
101335131 TTTTTATATAATTTGTGGTTTTTATAATTTCTTTTCTAT
1 TTTTTATAAAAAATATAGTTTTTATAAATTCTTTACTAT
*
101335170 TTTTAATAAA
1 TTTTTATAAA
101335180 TTTTTAATAT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (39 bp):
TTTTTATAAAAAATATAGTTTTTATAAATTCTTTACTAT
Found at i:101353428 original size:337 final size:334
Alignment explanation
Indices: 101352797--101353449 Score: 1000
Period size: 337 Copynumber: 1.9 Consensus size: 334
101352787 ACTCTAAAGT
*
101352797 AGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAATGTTAT
1 AGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAAAGTTAT
* *
101352862 AGATCATTTGGTGAGTAAGAAGGTATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATTACAAT
66 AGATCATTTGGTGACTAAGAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATTACAAT
* *
101352927 AATGAAATTTATGTTGCTAAAGAAAACACCTAAATAAGTTAGTCTTGAAATTTATTTTAACAAAT
131 AATGAAATTTATGTTGCTAAAAAAAACACCTAAATAAGCTAGTCTTGAAATTTATTTTAACAAAT
* ** * * *
101352992 CAAAGTGGCGCAATGGAAGTGTGGTGGGCCCATAACCCATAGGTTCCAAGATCGAAACTTGGATT
196 CAAAGTGGCGCAATGGAAGCGTGACGGGCCCATAACCCATAGGTCCCAAGATCAAAACTTGGATC
* *
101353057 TGATAATTTTGAAAAAAAATTTCTTGATTTTTTAAATTCTTATCAAAACGTGGGCTAGCTTGATT
261 TGATAATTTTGAAAAAAAATTTCTTAACTTTTTAAATTCTTATCAAAACGTGGGCTAGCTTGATT
101353122 TTTGAAATC
326 TTTGAAATC
* * * *
101353131 AGAGTTGATGGATAATTAACTTGTGGCGTATATATTAATATTAATTTGAAAACGAAAAAAAGTTA
1 AGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAG-AAAAAAGTTA
* *
101353196 TAGATCATTTGGTGACTAATAAGGGATGGCAGGTGAGCATTGAGGTTTTAGGGGATGCATTACAA
65 TAGATCATTTGGTGACTAAGAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATTACAA
* * *
101353261 TAGTGAACTTTATGTTGCTAAAAAAGGAACACCTAAATAAGCTAGTCTTGAAATTTATTTTGACA
130 TAATGAAATTTATGTTGCTAAAAAA--AACACCTAAATAAGCTAGTCTTGAAATTTATTTTAACA
* *
101353326 AATCAGAGTGGCGCAGTGGAAGCGTGACGGGCCCATAACCCATAGGTCCCAAGATCAAAACTTGG
193 AATCAAAGTGGCGCAATGGAAGCGTGACGGGCCCATAACCCATAGGTCCCAAGATCAAAACTTGG
* * *** * *
101353391 CTCTGATAATTTTGAGAAAGTTTTTCTTAACTTTTTAAATTCTTCTCAAAATGTGGGCT
258 ATCTGATAATTTTGAAAAAAAATTTCTTAACTTTTTAAATTCTTATCAAAACGTGGGCT
101353450 GAGTAGTGTA
Statistics
Matches: 285, Mismatches: 31, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
334 50 0.18
335 92 0.32
337 143 0.50
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (334 bp):
AGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAAAGTTAT
AGATCATTTGGTGACTAAGAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATTACAAT
AATGAAATTTATGTTGCTAAAAAAAACACCTAAATAAGCTAGTCTTGAAATTTATTTTAACAAAT
CAAAGTGGCGCAATGGAAGCGTGACGGGCCCATAACCCATAGGTCCCAAGATCAAAACTTGGATC
TGATAATTTTGAAAAAAAATTTCTTAACTTTTTAAATTCTTATCAAAACGTGGGCTAGCTTGATT
TTTGAAATC
Found at i:101354460 original size:140 final size:136
Alignment explanation
Indices: 101354230--101355061 Score: 883
Period size: 131 Copynumber: 6.2 Consensus size: 136
101354220 TTATGGGGTA
* * * *
101354230 ACACTTTTCTAAGTGTTGCGGTAGACTGGCCAACATACGTTTTCGGCAACTTTTTGTATAAGGGT
1 ACACTTTCCTAAGTGTTGCGATAGACT----AACATACGCTTTCGGCAACTCTTTGTATAAGGGT
* * *
101354295 TGCGATATGCATGCCTAAAGCAACGCTT-AATTAAGAGTTGGCTTTGTCTAGTCCTAAGACGACA
62 TGCGATATGTATGCCTAAGGCAACGCTTGAA-TAAGAGTTGGCTTTGTGTAGTCCTAAGACGACA
* *
101354359 -TTTATGAGGCA
126 CTTT-TGGGGCG
* **
101354370 ACACTTTTCTAAGTGTTGCGATAGACTGGCCAACATACGCCGTCGGCAACTCTTTGTATAAGGGT
1 ACACTTTCCTAAGTGTTGCGATAGACT----AACATACGCTTTCGGCAACTCTTTGTATAAGGGT
* * * * *
101354435 TGGGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-TGTTGTGTAGTCCTAAGACGACA
62 TGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCT-TTGTGTAGTCCTAAGACGACA
*
101354499 CTTTTGGGGCA
126 CTTTTGGGGCG
* * *
101354510 ACACTTTCCTAAGTGTTG-GA-ATA-T-AC-TACGCTTTCGCCAACTATTTGTATAAGGGTTGCG
1 ACACTTTCCTAAGTGTTGCGATAGACTAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGCG
* * * *
101354570 ATATGTATGCCTACGACAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCATAAGAC-ACATTTT
66 ATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTGTGTAGTCCTAAGACGACACTTT
*
101354634 TGTGGCG
130 TGGGGCG
*
101354641 ACACTTTCCTAAGTGTTG-G---GA-TAACCTACGCTTT-GGCAACTCTTTGTATAAGGGTTGCG
1 ACACTTTCCTAAGTGTTGCGATAGACTAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGCG
* * * *
101354700 ATATGTATGCCTACGGCAACGCTTGCATAGGAGTTAGAG-TTTGTGTAGTCCTAGGACGACACTT
66 ATATGTATGCCTAAGGCAACGCTTGAATAAGAGTT-G-GCTTTGTGTAGTCCTAAGACGACACTT
*
101354764 TTGTGGCG
129 TTGGGGCG
* * *
101354772 ACACTTTCCTAAGTGTTGC-ATAGACT---AT--GCTTTCGTCAACTCTTTATATAAGGGTTGGG
1 ACACTTTCCTAAGTGTTGCGATAGACTAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGCG
* ** * *
101354831 ATTTGTATGCCTAAGGCAATACTTGAATAAGAGTTGGTTTTTGTGTAGTCCTAAGATGACACTTT
66 ATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG-CTTTGTGTAGTCCTAAGACGACACTTT
*
101354896 TGTGGCG
130 TGGGGCG
*
101354903 ACACTTTCCTAAGTGTTGCGAT--A--AAC-TGCGCTTTCGGCAACTCTTTGTATAAGGGTTGCG
1 ACACTTTCCTAAGTGTTGCGATAGACTAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGCG
* ** * * *
101354963 ATATGTATGCCTACGGCAACGCTTGAGCAAGAGTTGGCTTTTGTCTAGTCCTAAGACTACAGTTT
66 ATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTGTGTAGTCCTAAGACGACACTTT
101355028 TGGGGCG
130 TGGGGCG
101355035 ACACTTTCCTAAGTGTT-CAGATAGACT
1 ACACTTTCCTAAGTGTTGC-GATAGACT
101355062 TGTCAACATA
Statistics
Matches: 600, Mismatches: 62, Indels: 64
0.83 0.09 0.09
Matches are distributed among these distances:
129 3 0.00
130 81 0.14
131 232 0.39
132 129 0.22
133 1 0.00
134 3 0.00
135 1 0.00
137 1 0.00
138 2 0.00
139 3 0.00
140 139 0.23
141 5 0.01
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.33
Consensus pattern (136 bp):
ACACTTTCCTAAGTGTTGCGATAGACTAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGCG
ATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTGTGTAGTCCTAAGACGACACTTTT
GGGGCG
Found at i:101354858 original size:261 final size:259
Alignment explanation
Indices: 101354265--101355051 Score: 934
Period size: 261 Copynumber: 3.0 Consensus size: 259
101354255 CTGGCCAACA
* * * * *
101354265 TACGTTTTCGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTT-AATTAA
1 TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAA-TAA
* * * * *
101354329 GAGTTGGC-TTTGTCTAGTCCTAAGACGACATTTATGAGGCAACACTTTTCTAAGTGTTGCGATA
65 GAGTTGGCTTTTGTGTAGTCCTAAGAC-ACATTTTTGTGGCGACACTTTCCTAAGTGTTG-G---
* * * * * * **
101354393 GACTGGCCAACATACGCCGTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAA
125 GA-T----AACCTACG-CTTTGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAA
** *
101354458 CGCTTAAATAAGAGTTGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAG
184 CGCTTGCAT-AGAGTTGGT-TTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAG
*
101354523 TGTTGGAATATAC
247 TGTTGGAATAGAC
* *
101354536 TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGACAACGCTTGAATAAG
1 TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
*
101354601 AGTTGGCTTTTGTGTAGTCATAAGACACATTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAC
66 AGTTGGCTTTTGTGTAGTCCTAAGACACATTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAC
101354666 CTACGCTTTGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAGG
131 CTACGCTTTGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATA-G
* * *
101354731 AGTTAGAGTTTGTGTAGTCCTAGGACGACACTTTTGTGGCGACACTTTCCTAAGTGTT-GCATAG
195 AGTT-G-GTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGAATAG
101354795 AC
258 AC
* * * * * * **
101354797 TATGCTTTCGTCAACTCTTTATATAAGGGTTGGGATTTGTATGCCTAAGGCAATACTTGAATAAG
1 TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
* * * *
101354862 AGTTGGTTTTTGTGTAGTCCTAAGATGACACTTTTGTGGCGACACTTTCCTAAGTGTTGCGATAA
66 AGTTGGCTTTTGTGTAGTCCTAAGA-CACATTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAA
* *
101354927 ACTGCGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGAGCA
130 CCTACGCTTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTT--GCA
* * *
101354992 -AGAGTTGGCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
192 TAGAGTTGG--TTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTT
101355052 CAGATAGACT
Statistics
Matches: 455, Mismatches: 50, Indels: 30
0.85 0.09 0.06
Matches are distributed among these distances:
260 1 0.00
261 138 0.30
262 99 0.22
263 101 0.22
264 1 0.00
265 3 0.01
266 1 0.00
267 2 0.00
270 1 0.00
271 90 0.20
272 18 0.04
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (259 bp):
TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
AGTTGGCTTTTGTGTAGTCCTAAGACACATTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAC
CTACGCTTTGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAGA
GTTGGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGAATAGAC
Found at i:101355325 original size:21 final size:21
Alignment explanation
Indices: 101355296--101355438 Score: 80
Period size: 21 Copynumber: 6.8 Consensus size: 21
101355286 TCAATTTAGG
*
101355296 TTAGGGTTTAAGGTTTAGTGT
1 TTAGAGTTTAAGGTTTAGTGT
* *
101355317 TTAGAGTTTAAGGTTTAGGGA
1 TTAGAGTTTAAGGTTTAGTGT
* *
101355338 TTATAG-TTATGGTTTA-TGGT
1 TTAGAGTTTAAGGTTTAGT-GT
* * *
101355358 GTA-AGGTTTTAGGGTTTTGTGT
1 TTAGA-G-TTTAAGGTTTAGTGT
**
101355380 TTATGAGTTTGGGGTTTAAGAT-T
1 TTA-GAGTTTAAGGTTT-AG-TGT
* *
101355403 TTAGAGTTTAGGGTTTAGGGT
1 TTAGAGTTTAAGGTTTAGTGT
*
101355424 TTAGGGTTT-AGGTTT
1 TTAGAGTTTAAGGTTT
101355439 TAAGGTTTTT
Statistics
Matches: 95, Mismatches: 17, Indels: 21
0.71 0.13 0.16
Matches are distributed among these distances:
19 1 0.01
20 18 0.19
21 34 0.36
22 33 0.35
23 7 0.07
24 2 0.02
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.48
Consensus pattern (21 bp):
TTAGAGTTTAAGGTTTAGTGT
Found at i:101355382 original size:14 final size:14
Alignment explanation
Indices: 101355365--101355447 Score: 58
Period size: 14 Copynumber: 5.8 Consensus size: 14
101355355 GGTGTAAGGT
*
101355365 TTTAGGGTTTTGTG
1 TTTAGGGTTTTGGG
* *
101355379 TTTATGAGTTTGGGG
1 TTTA-GGGTTTTGGG
* * *
101355394 TTTAAGATTTTAGAG
1 TTTAGGGTTTT-GGG
*
101355409 TTTAGGGTTTAGGG
1 TTTAGGGTTTTGGG
* *
101355423 TTTAGGGTTTAGGT
1 TTTAGGGTTTTGGG
*
101355437 TTTAAGGTTTT
1 TTTAGGGTTTT
101355448 TTTAACATAA
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
14 31 0.60
15 21 0.40
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTTGGG
Found at i:101356143 original size:22 final size:21
Alignment explanation
Indices: 101356118--101356173 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
101356108 TCAAAAAATT
101356118 TATAAAATAAAAATAGAAAAAA
1 TATAAAATAAAAAT-GAAAAAA
***
101356140 TATATGTTAAAAATGAAAAAA
1 TATAAAATAAAAATGAAAAAA
*
101356161 -ATTAAAACAAAAA
1 TA-TAAAATAAAAA
101356174 CTTTTAGTAT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
20 1 0.04
21 14 0.54
22 11 0.42
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (21 bp):
TATAAAATAAAAATGAAAAAA
Found at i:101356852 original size:35 final size:35
Alignment explanation
Indices: 101356760--101356845 Score: 145
Period size: 35 Copynumber: 2.5 Consensus size: 35
101356750 GCAAACCTAT
*
101356760 TGCATCTGCCGTCCACTGCCTGCCCTAGCCACCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
* *
101356795 TGCATCTACAGTCCACTGCCTGCCCCAGCCACCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
101356830 TGCATCTGCCGTCCAC
1 TGCATCTGCCGTCCAC
101356846 CACCTGCTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.14, C:0.45, G:0.21, T:0.20
Consensus pattern (35 bp):
TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
Found at i:101358221 original size:5 final size:5
Alignment explanation
Indices: 101358213--101358244 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
101358203 AATTATGTGA
101358213 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
101358245 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:101358233 original size:14 final size:14
Alignment explanation
Indices: 101358214--101358244 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
101358204 ATTATGTGAA
101358214 AAATAAAATAAAAT
1 AAATAAAATAAAAT
101358228 AAATAAAATAAAAT
1 AAATAAAATAAAAT
101358242 AAA
1 AAA
101358245 GAACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:101373788 original size:74 final size:75
Alignment explanation
Indices: 101373705--101373856 Score: 204
Period size: 75 Copynumber: 2.0 Consensus size: 75
101373695 CAGTTGTCTC
* * * *
101373705 ATAATTTTTTTG-TGTCATG-GGAATCAAGTTGACAACATGTT-GCAA-TGTGTTGATTGCTTTT
1 ATAA-TTTTTTGATGTCATGTGAAAT-AAGTTGACAACATGTTCGCAACT-TGTTGACTACTTCT
101373766 ATTAGGATTTTGT
63 ATTAGGATTTTGT
*
101373779 ATAATTTTTTGATGTCATGTGAAATAGGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
1 ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
101373844 AGGATTTTGT
66 AGGATTTTGT
101373854 ATA
1 ATA
101373857 TAAATTACTA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
73 7 0.10
74 26 0.38
75 35 0.51
76 1 0.01
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (75 bp):
ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATT
AGGATTTTGT
Found at i:101374308 original size:36 final size:34
Alignment explanation
Indices: 101374230--101374348 Score: 112
Period size: 36 Copynumber: 3.3 Consensus size: 34
101374220 AGGTCAATTG
* * *
101374230 CAACCTTTTCTAAAAGTTGCCTTAAACAAGATCTATCG
1 CAACCTTTT-T-AAGGTTACCTTAAAC-A-ATCTATCC
*
101374268 CAACCTTTTTAGGGTTACCTTAAACGAATCTATCAC
1 CAACCTTTTTAAGGTTACCTTAAAC-AATCTATC-C
* * *
101374304 CAACCTTTTTAAGGTTGCTTTAGACAAGTCTATCC
1 CAACCTTTTTAAGGTTACCTTAAACAA-TCTATCC
101374339 CAACCTTTTT
1 CAACCTTTTT
101374349 TTAAGGTTGC
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
35 20 0.29
36 40 0.57
37 1 0.01
38 9 0.13
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (34 bp):
CAACCTTTTTAAGGTTACCTTAAACAATCTATCC
Found at i:101374356 original size:37 final size:35
Alignment explanation
Indices: 101374047--101374695 Score: 191
Period size: 35 Copynumber: 17.9 Consensus size: 35
101374037 GAGACAAAGA
* * **
101374047 TCTATCCCAACCTTTTTAAGTTTGCCTTAGACGGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAAACAAG
* * * * **
101374082 TTTA-CCCTAACCATTTTAAGGTTGCTTTAGACGGG
1 TCTATCCC-AACCTTTTTAAGGTTGCCTTAAACAAG
* * * *
101374117 TTTATCCCAACTTTTTTTAA-GTTGCCTTGGGAA-AGG
1 TCTATCCCAAC-CTTTTTAAGGTTGCCTT--AAACAAG
* * * **
101374153 TATATCGCAACCTTTTTAGGGTTG-CTGTAAACGGG
1 TCTATCCCAACCTTTTTAAGGTTGCCT-TAAACAAG
* ** ** * * *
101374188 TCTATCGCAAAATTTTTAACATTGTCTTAGACAGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAAACAAG
* ** *
101374223 TCAATTGCAACCTTTTCTAAAAGTTGCCTTAAACAAG
1 TCTATCCCAACCTTTT-T-AAGGTTGCCTTAAACAAG
* * *
101374260 ATCTATCGCAACCTTTTTAGGGTTACCTTAAACGAA-
1 -TCTATCCCAACCTTTTTAAGGTTGCCTTAAAC-AAG
* *
101374296 TCTATCACCAACCTTTTTAAGGTTGCTTTAGACAAG
1 TCTATC-CCAACCTTTTTAAGGTTGCCTTAAACAAG
* *
101374332 TCTATCCCAACCTTTTTTTAAGGTTGCCATAGACAAGG
1 TCTATCCCAACC--TTTTTAAGGTTGCCTTAAACAA-G
*** * * * * * *
101374370 TCTATTGTAACATTTTTAAAATGTTGCCGTAGATAGG
1 TCTATCCCAACCTTTTT--AAGGTTGCCTTAAACAAG
* * *
101374407 CCTATCGCAACCTTTTTTCAAGGTTGCCGTAAACAAG
1 TCTATCCCAACC-TTTTT-AAGGTTGCCTTAAACAAG
* * * * * *
101374444 -ATATACCACAACTTTTTTAAAAGGTTACCGTAGATAAGG
1 TCTAT-CC-CAACCTTTTT--AAGGTTGCCTTAAACAA-G
** ** *
101374483 TCTATAGCAATTTTTATTAAGGGTTGCCGTAAACAAG
1 TCTATCCCAACCTTT-TTAA-GGTTGCCTTAAACAAG
* ** *
101374520 GCT-TCTCGCAACCTTTTTAAGGTTGCCGAAAATGAA-
1 TCTATC-C-CAACCTTTTTAAGGTTGCCTTAAA-CAAG
* * * *
101374556 TCTATACCAATCTTTTTAACGTTG-CTCTCAACAAG
1 TCTATCCCAACCTTTTTAAGGTTGCCT-TAAACAAG
* * ***
101374591 TCTATCACAACCATTTTTAACGGTTGTCTTAAATTGG
1 TCTATCCCAACC-TTTTTAA-GGTTGCCTTAAACAAG
* * * * ** **
101374628 TCTATCGCAACCCTGTTATGGTTGTATTAAACGGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAAACAAG
*
101374663 TCTATCGCAACCTTTTTCAAAGGTTGCCCTTAA
1 TCTATCCCAACCTTTTT--AAGGTTG-CCTTAA
101374696 CTAGGTCTAC
Statistics
Matches: 463, Mismatches: 111, Indels: 77
0.71 0.17 0.12
Matches are distributed among these distances:
34 8 0.02
35 155 0.33
36 101 0.22
37 103 0.22
38 90 0.19
39 3 0.01
40 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (35 bp):
TCTATCCCAACCTTTTTAAGGTTGCCTTAAACAAG
Found at i:101374386 original size:38 final size:37
Alignment explanation
Indices: 101374309--101374443 Score: 99
Period size: 37 Copynumber: 3.6 Consensus size: 37
101374299 ATCACCAACC
** *
101374309 TTTTTAAGGTTGCTTTAGACAAGTCTATCCCAACCTT
1 TTTTTAAGGTTGCCATAGACAAGTCTATCCCAACATT
***
101374346 TTTTTAAGGTTGCCATAGACAAGGTCTATTGTAACATT
1 TTTTTAAGGTTGCCATAGACAA-GTCTATCCCAACATT
** * * * * * * *
101374384 TTTAAAATGTTGCCGTAGATAGGCCTATCGCAACCTT
1 TTTTTAAGGTTGCCATAGACAAGTCTATCCCAACATT
* * *
101374421 TTTTCAAGGTTGCCGTAAACAAG
1 TTTTTAAGGTTGCCATAGACAAG
101374444 ATATACCACA
Statistics
Matches: 75, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
37 48 0.64
38 27 0.36
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (37 bp):
TTTTTAAGGTTGCCATAGACAAGTCTATCCCAACATT
Found at i:101374387 original size:109 final size:107
Alignment explanation
Indices: 101374090--101374374 Score: 290
Period size: 109 Copynumber: 2.6 Consensus size: 107
101374080 GGTTTACCCT
* * * *
101374090 AACCATTTTAAGGTTGCTTTAGACGGGTTTATCCCAA-CTTTTTTTAAGTTGCCTTGGGA-AAGG
1 AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAAGTTGCCTT-AGACAAGG
* * ** *
101374153 TATATCGCAACCTTTTTAGGGTTGCTGTAAACGGGTCTATCGC
65 TCTATCGCAACCTTTTTAGGGTTCCTGTAAACGAATCTATCCC
** ** * ** ** *
101374196 AAAATTTTTAACATTG-TCTTAGACAGGTCAATTGCAACCTTTTCTAAAAGTTGCCTTAAACAAG
1 AACCTTTTTAAGGTTGCT-TTAGACAGGTCTATCCCAACCTTTT-TTTAAGTTGCCTTAGACAAG
*
101374260 ATCTATCGCAACCTTTTTAGGGTTACCT-TAAACGAATCTATCACC
64 GTCTATCGCAACCTTTTTAGGGTT-CCTGTAAACGAATCTATC-CC
* *
101374305 AACCTTTTTAAGGTTGCTTTAGACAAGTCTATCCCAACCTTTTTTTAAGGTTGCCATAGACAAGG
1 AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAA-GTTGCCTTAGACAAGG
101374370 TCTAT
65 TCTAT
101374375 TGTAACATTT
Statistics
Matches: 138, Mismatches: 33, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
105 1 0.01
106 25 0.18
107 6 0.04
108 51 0.37
109 54 0.39
110 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (107 bp):
AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAAGTTGCCTTAGACAAGGT
CTATCGCAACCTTTTTAGGGTTCCTGTAAACGAATCTATCCC
Found at i:101379659 original size:40 final size:40
Alignment explanation
Indices: 101379604--101379690 Score: 167
Period size: 40 Copynumber: 2.2 Consensus size: 40
101379594 ATGAATTAGG
101379604 ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
1 ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
101379644 ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
1 ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
101379684 AT-ATTAA
1 ATAATTAA
101379691 ACTAACTCCA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 5 0.11
40 42 0.89
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (40 bp):
ATAATTAATCAGACACCATCCCTGTTTTGTGAGCAATGCA
Found at i:101383955 original size:24 final size:24
Alignment explanation
Indices: 101383899--101383949 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
101383889 TGTACATAGA
101383899 ATAATAATGCATGGATACAATATT
1 ATAATAATGCATGGATACAATATT
101383923 ATAATAATGCATGGATACAATATT
1 ATAATAATGCATGGATACAATATT
101383947 ATA
1 ATA
101383950 TGAATGAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.33
Consensus pattern (24 bp):
ATAATAATGCATGGATACAATATT
Found at i:101384539 original size:25 final size:25
Alignment explanation
Indices: 101384459--101384543 Score: 70
Period size: 27 Copynumber: 3.4 Consensus size: 25
101384449 TAATATATAT
* *
101384459 AATTTTAAAGTAAATAA--TAAAAC
1 AATTTTAAAATAAATAATGTAAAAG
*
101384482 AA-TTTAAAATGAAA-AATGCATAAAG
1 AATTTTAAAAT-AAATAATGTA-AAAG
* *
101384507 CGAGTTTAAAATAAATAATGTAAAAG
1 -AATTTTAAAATAAATAATGTAAAAG
101384533 AATTTTAAAAT
1 AATTTTAAAAT
101384544 CTATATTACA
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
22 9 0.19
23 5 0.10
24 1 0.02
25 12 0.25
26 8 0.17
27 13 0.27
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (25 bp):
AATTTTAAAATAAATAATGTAAAAG
Found at i:101384896 original size:21 final size:20
Alignment explanation
Indices: 101384843--101384896 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
101384833 CAATAACTTA
*
101384843 AAATATAAAATAATTTGAAAT
1 AAATAT-AAATAATTTGAAAG
*
101384864 AAATATATAATAATTTTTAAAG
1 AAATATA-AATAA-TTTGAAAG
*
101384886 AATTATAAATA
1 AAATATAAATA
101384897 TCTAAAAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.04
21 15 0.54
22 12 0.43
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
AAATATAAATAATTTGAAAG
Found at i:101390598 original size:17 final size:18
Alignment explanation
Indices: 101390566--101390608 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
101390556 TTTCACAGAT
*
101390566 TTAATAGTTTATATTA-AA
1 TTAATA-TTTACATTATAA
*
101390584 TTTATATTTACATTATAA
1 TTAATATTTACATTATAA
101390602 TTAATAT
1 TTAATAT
101390609 AAAAGCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
TTAATATTTACATTATAA
Found at i:101390922 original size:19 final size:19
Alignment explanation
Indices: 101390900--101390941 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
101390890 GATCTACCCC
101390900 TTCAAAGCAACAAAAAGTA
1 TTCAAAGCAACAAAAAGTA
101390919 TTCAAAGCAACAAAAAGTA
1 TTCAAAGCAACAAAAAGTA
101390938 TTCA
1 TTCA
101390942 TCAAATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.55, C:0.17, G:0.10, T:0.19
Consensus pattern (19 bp):
TTCAAAGCAACAAAAAGTA
Found at i:101397846 original size:30 final size:30
Alignment explanation
Indices: 101397810--101397896 Score: 165
Period size: 30 Copynumber: 2.9 Consensus size: 30
101397800 GCCTTTGCCA
101397810 CCACTAGCCACACTTGCTCCACCACCAACT
1 CCACTAGCCACACTTGCTCCACCACCAACT
*
101397840 CCACTAGCCACACTTGCTCCACCACCTACT
1 CCACTAGCCACACTTGCTCCACCACCAACT
101397870 CCACTAGCCACACTTGCTCCACCACCA
1 CCACTAGCCACACTTGCTCCACCACCA
101397897 CTTGTACCTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.25, C:0.51, G:0.07, T:0.17
Consensus pattern (30 bp):
CCACTAGCCACACTTGCTCCACCACCAACT
Found at i:101398425 original size:22 final size:24
Alignment explanation
Indices: 101398376--101398421 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
101398366 TTTTGTTTGT
101398376 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
101398399 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
101398422 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:101398479 original size:25 final size:25
Alignment explanation
Indices: 101398376--101398582 Score: 78
Period size: 23 Copynumber: 8.6 Consensus size: 25
101398366 TTTTGTTTGT
* *
101398376 TATTAT-TATAT-TTTTTAATATTA
1 TATTATGTATATATATTTAATACTA
* * *
101398399 TATTATATATAT-TCTTT--TAATA
1 TATTATGTATATATATTTAATACTA
* * * *
101398421 TATTAGGTATAT-T-CTAAATTCTA
1 TATTATGTATATATATTTAATACTA
*
101398444 TATTACGTATATATA-TT-ATACTA
1 TATTATGTATATATATTTAATACTA
* *
101398467 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATATTTAATACTA
* * * **
101398492 TATTATTTATATTTTTTTTTCTAAATGTTA
1 TATTATGTATA---TATATT-T-AATACTA
*
101398522 TCTTATGTATATAT-TTTAAT--TA
1 TATTATGTATATATATTTAATACTA
* * * *
101398544 TATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATATTTAATACTA
*
101398569 TATTATGTACATAT
1 TATTATGTATATAT
101398583 TTTTTTATAT
Statistics
Matches: 140, Mismatches: 29, Indels: 28
0.71 0.15 0.14
Matches are distributed among these distances:
21 1 0.01
22 29 0.21
23 41 0.29
24 16 0.11
25 30 0.21
26 2 0.01
27 2 0.01
28 4 0.03
29 1 0.01
30 14 0.10
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TATTATGTATATATATTTAATACTA
Found at i:101398544 original size:22 final size:22
Alignment explanation
Indices: 101398519--101398585 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 22
101398509 TTTCTAAATG
*
101398519 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
101398541 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
101398566 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
101398586 TTTATATCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:101398572 original size:77 final size:78
Alignment explanation
Indices: 101398432--101398588 Score: 183
Period size: 77 Copynumber: 2.0 Consensus size: 78
101398422 ATTAGGTATA
* *
101398432 TTCTAAATTCTATATTACGTATATATATTATACTATTTTATGTATATATCTTTAATACTATATTA
1 TTCTAAATTCTATATTACGTATATATATTATACTATATTATGTATATATCTTTAACACTATATTA
* * *
101398497 TTTATATTTTTTT
66 TGTACATATTTTT
* * * * * * *
101398510 TTCTAAATGT-TATCTTATGTATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATT
1 TTCTAAAT-TCTATATTACGTATATATATTATACTATATTATGTATATATCTTTAACACTATATT
101398573 ATGTACATATTTTT
65 ATGTACATATTTTT
101398587 TT
1 TT
101398589 ATATCTATTT
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
77 40 0.61
78 25 0.38
79 1 0.02
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (78 bp):
TTCTAAATTCTATATTACGTATATATATTATACTATATTATGTATATATCTTTAACACTATATTA
TGTACATATTTTT
Found at i:101398676 original size:25 final size:24
Alignment explanation
Indices: 101398648--101398703 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
101398638 GTTATATTTT
*
101398648 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
101398673 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
101398696 CACTATTA
1 CACTATTA
101398704 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:101411671 original size:14 final size:14
Alignment explanation
Indices: 101411649--101411683 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
101411639 TGCCGAGGTA
101411649 TTTTT-AATTTTTG
1 TTTTTCAATTTTTG
101411662 TTTTTCAATTTTTG
1 TTTTTCAATTTTTG
101411676 TTTTTCAA
1 TTTTTCAA
101411684 AAATCAACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (14 bp):
TTTTTCAATTTTTG
Found at i:101411698 original size:87 final size:87
Alignment explanation
Indices: 101411499--101411937 Score: 351
Period size: 87 Copynumber: 4.8 Consensus size: 87
101411489 TATTTCTATC
* * * ** *
101411499 TTTCAAAAAATCAACTCATATTCCGAGAGGTGAGTTGGGCCTTAGGTCACATACTGAGGTATTTT
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGG-GGCATGCTGAGGTATTTT
* *
101411564 CAATTTCCGTT-TTTTTTAATTTATGCT
63 CAATTT---TTGTTTTTCAATTTTTGCT
* * * *
101411591 TTTCAAAAATCAACTTATATTGCGAGAGGTGAGCTGAGCCTCGGGGCATGCCGAGGTATTTTTAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAGGTATTTTCAA
*
101411656 TTTTTGTTTTTCAATTTTTGTT
66 TTTTTGTTTTTCAATTTTTGCT
** * *
101411678 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTATCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAGGTATTTTCAA
*
101411743 TTTCTGTTTTTCAATTTTTGCCTT
66 TTTTTGTTTTTCAATTTTTG-C-T
** * * * * * *
101411767 ACAAATTCTGCTTTTCAAATCAACTCATATTGCAAGAAGTGAGTTAAGCCTCAGGACACGCTGAG
1 -----TT-T-C---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAG
* * *
101411832 GTATTTTCAATTTTCGTTTTTTTAATTTATG-T
56 GTATTTTCAATTTTTG-TTTTTCAATTTTTGCT
* * * * * * *
101411864 TTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTC
1 TT-T-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAGGTATTTTC
101411929 AATTTTTGT
64 AATTTTTGT
101411938 CAAAACTCAA
Statistics
Matches: 289, Mismatches: 44, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
86 2 0.01
87 89 0.31
88 1 0.00
89 80 0.28
90 3 0.01
91 32 0.11
92 8 0.03
94 2 0.01
95 1 0.00
96 1 0.00
97 1 0.00
99 57 0.20
100 12 0.04
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (87 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAGGTATTTTCAA
TTTTTGTTTTTCAATTTTTGCT
Found at i:101411884 original size:188 final size:187
Alignment explanation
Indices: 101411587--101411933 Score: 475
Period size: 188 Copynumber: 1.8 Consensus size: 187
101411577 TTTTAATTTA
* * * * * * *
101411587 TGCTTTTCAAAAATCAACTTATATTGCGAGAGGTGAGCTGAGCCTCGGGGCATGCCGAGGTATTT
1 TGCTTTTC-AAAATCAACTCATATTGCAAGAAGTGAGCTAAGCCTCAGGACACGCCGAGGTATTT
* * * ** *
101411652 TTAATTTTTGTTTTTCAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
65 TCAATTTTCGTTTTTCAATTTATGTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
*
101411717 CTCAAGG-CACGCTGAGGT-ATTATCAATTTCTGTTTTTCAATTTTTGCCTTACAAATTC
130 ATC-AGGACACGCTGAGGTAATT-TCAATTTCTGTTTTTCAATTTTTGCCTTACAAATTC
* *
101411775 TGCTTTTC-AAATCAACTCATATTGCAAGAAGTGAGTTAAGCCTCAGGACACGCTGAGGTATTTT
1 TGCTTTTCAAAATCAACTCATATTGCAAGAAGTGAGCTAAGCCTCAGGACACGCCGAGGTATTTT
*
101411839 CAATTTTCGTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
66 CAATTTTCG-TTTTTCAATTTATGTTT-TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
101411904 CATCAGGACACGCTGAGGTAATTTCAATTT
129 CATCAGGACACGCTGAGGTAATTTCAATTT
101411934 TTGTCAAAAC
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
186 54 0.39
187 18 0.13
188 63 0.46
189 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (187 bp):
TGCTTTTCAAAATCAACTCATATTGCAAGAAGTGAGCTAAGCCTCAGGACACGCCGAGGTATTTT
CAATTTTCGTTTTTCAATTTATGTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCA
TCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAATTTTTGCCTTACAAATTC
Found at i:101412042 original size:75 final size:75
Alignment explanation
Indices: 101411850--101412644 Score: 1011
Period size: 75 Copynumber: 10.8 Consensus size: 75
101411840 AATTTTCGTT
* * * * * *
101411850 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCATCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
101411914 CGCTGAGGTA
66 CGTTGAGGTA
* * * *
101411924 ATTTCAA--T-T-TTTGTC--AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
101411983 CGTTGAGGTA
66 CGTTGAGGTA
* * * *
101411993 TTTTCAATTTCAGTTTTTCAAAAAAATCAACTCATATTGCGATAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
101412058 CGCTGAGGTA
66 CGTTGAGGTA
* * * * *
101412068 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAAACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
101412131 CGTTGAGGTA
66 CGTTGAGGTA
* *
101412141 TTTTCAATTTCTGTCTTTT-AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
1 TTTTCAATTTCTGT-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
101412205 ACGTTGAGGTA
65 ACGTTGAGGTA
* * *
101412216 TTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
101412278 CGCTGAGGTGA
66 CGTTGAGGT-A
* *
101412289 -TTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
101412351 CGTTGAGCTA
66 CGTTGAGGTA
* * * *
101412361 TTTTCAATTTCTGTCTTT-AAAAAAATTAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
101412425 CGTTGAGGTA
66 CGTTGAGGTA
* *
101412435 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
101412498 CGCTGAGGTA
66 CGTTGAGGTA
* * *
101412508 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
101412571 CGTTGAGGTA
66 CGTTGAGGTA
* * * * *
101412581 TTTTCAATTTCTATCTTTCAAAAAAAATCAGCTCATCTTGCGAGAGGTGAGTTGAACCTCAAGA
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
101412645 TGCTGAGGTG
Statistics
Matches: 626, Mismatches: 72, Indels: 44
0.84 0.10 0.06
Matches are distributed among these distances:
69 54 0.09
70 4 0.01
71 80 0.13
72 26 0.04
73 138 0.22
74 119 0.19
75 166 0.27
76 39 0.06
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGTTGAGGTA
Found at i:101412343 original size:220 final size:220
Alignment explanation
Indices: 101411870--101412644 Score: 1258
Period size: 220 Copynumber: 3.5 Consensus size: 220
101411860 ATGTTTCTAA
* * * * * *
101411870 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* * * *
101411935 TGTC-----AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATT
66 TGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
* * *
101411995 TTCAATTTC-AGTTTTTCAAAAAAATCAACTCATATTGCGATAAGTGAGTTGAGCCTCAGGACAC
131 TTCAATTTCTA-TTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA--AGAC
101412059 GCTGAGGTAATTTCAATTTTTGTTTGTC
193 GCTGAGGTAATTTCAATTTTTGTTTGTC
* *
101412087 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAAACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
101412152 TGTCTTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
66 TGTC-TTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
101412217 TTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGC
130 TTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGC
*
101412281 TGAGGTGATTTCAATTTTTGTTTGTC
195 TGAGGTAATTTCAATTTTTGTTTGTC
*
101412307 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGCTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
101412372 TGTCTTTAAAAAAATTAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
66 TGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
*
101412437 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCT
131 TTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCT
101412502 GAGGTAATTTCAATTTTTGTTTGTC
196 GAGGTAATTTCAATTTTTGTTTGTC
101412527 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* *
101412592 TATCTTTCAAAAAAAATCAGCTCATCTTGCGAGAGGTGAGTTGAACCTCAAGA
66 TGTCTTT--AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
101412645 TGCTGAGGTG
Statistics
Matches: 522, Mismatches: 26, Indels: 15
0.93 0.05 0.03
Matches are distributed among these distances:
217 61 0.12
219 76 0.15
220 237 0.45
222 80 0.15
223 67 0.13
224 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (220 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATT
TTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCT
GAGGTAATTTCAATTTTTGTTTGTC
Found at i:101412609 original size:367 final size:369
Alignment explanation
Indices: 101411863--101412669 Score: 1148
Period size: 367 Copynumber: 2.2 Consensus size: 369
101411853 TTAATTTATG
* * * * *
101411863 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCATCAGGACACGCTGAGGTAATTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA--AGACGCTGAGGTGATTT
*
101411928 CAA---TT-TTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGA
63 CAATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGA
* * * * *
101411989 GGTATTTTCAATTTCAGTTTTTCAAAAAAATCAACTCATATTGCGATAAGTGAGTTGAGCCTCAG
128 GCTATTTTCAATTTCAGTCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAA
*
101412054 GACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
193 GACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * * *
101412119 AGCCTTAAAACACGTTGAGGTATTTTCAATTTCTGTCTTTTAAAAAAATCAGCTCATATTGCGAG
258 AACCTTAAAACACGCTGAGGTAATTTCAATTTCTGTCTTGTAAAAAAATCAACTCATATTGCGAG
*
101412184 AGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTATT
323 AGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTATC
*
101412231 TTTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCTGAGGTGATTTCAA
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGATTTCAA
*
101412295 TTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGCT
66 TTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGCT
* * * *
101412360 ATTTTCAATTTCTGTCTTT-AAAAAAATTAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
131 ATTTTCAATTTCAGTCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGAC
* * * *
101412424 ACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGA
196 ACGCTGAGGTAATTTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * *
101412489 ACC-T-CAAGACGCTGAGGTAATTTCAATTTTTGT-TTGT-CAAAAATCAACTCATATTGCGAGA
259 ACCTTAAAACACGCTGAGGTAATTTCAATTTCTGTCTTGTAAAAAAATCAACTCATATTGCGAGA
*
101412550 GGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTATC
324 GGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTATC
* * * * *
101412596 TTTCAAAAAAAATCAGCTCATCTTGCGAGAGGTGAGTTGAACCTCAAGATGCTGAGGTGTTTTCC
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGATTTCA
101412661 ATTTTTGTT
65 ATTTTTGTT
101412670 CTTCAATTTT
Statistics
Matches: 392, Mismatches: 39, Indels: 17
0.88 0.09 0.04
Matches are distributed among these distances:
364 18 0.05
365 70 0.18
366 39 0.10
367 153 0.39
368 78 0.20
369 34 0.09
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (369 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGATTTCAA
TTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGCT
ATTTTCAATTTCAGTCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGAC
ACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
CTTAAAACACGCTGAGGTAATTTCAATTTCTGTCTTGTAAAAAAATCAACTCATATTGCGAGAGG
TGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTATC
Found at i:101412782 original size:15 final size:14
Alignment explanation
Indices: 101412746--101412778 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
101412736 CGCTGAGGTA
101412746 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
101412760 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
101412774 TTTTC
1 TTTTC
101412779 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:101412794 original size:91 final size:91
Alignment explanation
Indices: 101412646--101412817 Score: 236
Period size: 91 Copynumber: 1.9 Consensus size: 91
101412636 ACCTCAAGAT
* * * * * *
101412646 GCTGAGGTGTTTTCCATTTTTGTTCTTCAATTTTTGCGTTTCAAAAAAATCAGCTCATATTGCGA
1 GCTGAGGTATTTTCAAATTCTGTTCTTCAAATTTTGCGTTTCAAAAAAATCAACTCATATTGCGA
* *
101412711 GTGGTGAGTTGAGCCTTGACTCACAC
66 GAGGTGAGTTCAGCCTTGACTCACAC
* ** *
101412737 GCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCCAAAAAATCAACTCATATTGCGA
1 GCTGAGGTATTTTCAAATTCTGTTCTTCAAATTTTGCGTTTCAAAAAAATCAACTCATATTGCGA
101412802 GAGGTGAGTTCAGCCT
66 GAGGTGAGTTCAGCCT
101412818 CAGGACGTGC
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
91 69 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.39
Consensus pattern (91 bp):
GCTGAGGTATTTTCAAATTCTGTTCTTCAAATTTTGCGTTTCAAAAAAATCAACTCATATTGCGA
GAGGTGAGTTCAGCCTTGACTCACAC
Found at i:101412990 original size:90 final size:90
Alignment explanation
Indices: 101412835--101413105 Score: 295
Period size: 87 Copynumber: 3.0 Consensus size: 90
101412825 TGCTAAGATA
**
101412835 TTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
1 TTTTCAATTTATGTTTG-C-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCAC
* * *
101412900 ACGCCGAGGTATTTTCAATTGAT-TTT
64 ATGCCGAGGTATTTTCAATTAATCTGT
* *
101412926 TTTTCAATTTATGCTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGGTCACA
1 TTTTCAATTTATG-TTTGCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCACA
**
101412991 TATCGAGGTATTTTCAA--AATCTGT
65 TGCCGAGGTATTTTCAATTAATCTGT
* * * * * * *
101413015 TTTACAAATTT-TGTTT-TAAAAATCAACTCATATTGCAAGAAGTGAGTGGAGCCTTGGCTCACG
1 TTTTC-AATTTATGTTTGCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCACA
* *
101413078 TGCTGAGCTATTTTCAATT--TCTGT
65 TGCCGAGGTATTTTCAATTAATCTGT
101413102 TTTT
1 TTTT
101413106 AATGTCTAGT
Statistics
Matches: 153, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
87 61 0.40
88 5 0.03
89 8 0.05
90 61 0.40
91 14 0.09
92 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (90 bp):
TTTTCAATTTATGTTTGCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCACAT
GCCGAGGTATTTTCAATTAATCTGT
Found at i:101413025 original size:255 final size:248
Alignment explanation
Indices: 101412516--101413061 Score: 629
Period size: 255 Copynumber: 2.2 Consensus size: 248
101412506 TAATTTCAAT
* * * *
101412516 TTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
1 TTTTGTTT-T-AAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAAGACACGCTAAGATA
* * *
101412581 TTTTCAATTTCTATCTTTCAAAAAAAATCAGCTCATCTTGCGAGAGGTGAGTTGAACCTCAAGAT
64 TTTTCAATTTATATCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAT
* * * * * *
101412646 GCTGAGGTGTTTTCCATTTTTGTTCTTCAATTTTTGCGTTTCAAAAAAATCAGCTCATATTGCGA
128 GCCGAGGTATTTTCAATTTTTGTTCTTCAATTTATGCGTTTC-AAAAAATCAACTCATATTACGA
* * * *
101412711 GTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAA
192 GAGGTGAGTTGAGCCTTGACTCACAAGCTGAGGTATTTTCAAAATCTGTTTTACAAA
* **
101412768 TTTTGTTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACGTGCTAAGA
1 TTTTG-TTTT---AAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAAGACACGCTAAGA
* *
101412833 TATTTTCAATTTATGT-TTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG
62 TATTTTCAATTTATATCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG
*
101412895 ATCACACGCCGAGGTATTTTCAATTGATTT-TTTTTCAATTTATGC-TTTGC-AAAAATCAACTC
126 AT-----GCCGAGGTATTTTCAATT--TTTGTTCTTCAATTTATGCGTTT-CAAAAAATCAACTC
** *
101412957 ATATTACGAGAGGTGAGTTGAGCCTTGGGTCACATATC-GAGGTATTTTCAAAATCTGTTTTACA
183 ATATTACGAGAGGTGAGTTGAGCCTTGACTCACA-AGCTGAGGTATTTTCAAAATCTGTTTTACA
101413021 AA
247 AA
* *
101413023 TTTTGTTTTAAAAATCAACTCATATTGCAAGAAGTGAGT
1 TTTTGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGT
101413062 GGAGCCTTGG
Statistics
Matches: 252, Mismatches: 29, Indels: 27
0.82 0.09 0.09
Matches are distributed among these distances:
251 32 0.13
252 42 0.17
253 5 0.02
254 65 0.26
255 72 0.29
256 19 0.08
257 14 0.06
258 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (248 bp):
TTTTGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAAGACACGCTAAGATATT
TTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGATGCC
GAGGTATTTTCAATTTTTGTTCTTCAATTTATGCGTTTCAAAAAATCAACTCATATTACGAGAGG
TGAGTTGAGCCTTGACTCACAAGCTGAGGTATTTTCAAAATCTGTTTTACAAA
Found at i:101413071 original size:87 final size:89
Alignment explanation
Indices: 101412835--101413076 Score: 262
Period size: 90 Copynumber: 2.7 Consensus size: 89
101412825 TGCTAAGATA
**
101412835 TTTT-CAATTTATG-TTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTTACAATTTATGCTTTG-C-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATC
* * *
101412898 ACACGCCGAGGTATTTTCAATTGATTT
64 ACACACCGAGGTATTTTCAA-TAATTG
* * *
101412925 TTTTTCAATTTATGCTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGGTCAC
1 TTTTACAATTTATGCTTTGCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCAC
* *
101412990 ATATCGAGGTATTTTCAA-AATCTG
66 ACACCGAGGTATTTTCAATAAT-TG
* * * * *
101413014 TTTTACAAATTT-TG-TTT-TAAAAATCAACTCATATTGCAAGAAGTGAGTGGAGCCTTGGCTCA
1 TTTTAC-AATTTATGCTTTGCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCA
101413076 C
65 C
101413077 GTGCTGAGCT
Statistics
Matches: 132, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
87 40 0.30
88 5 0.04
89 8 0.06
90 65 0.49
91 10 0.08
92 4 0.03
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (89 bp):
TTTTACAATTTATGCTTTGCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCAC
ACACCGAGGTATTTTCAATAATTG
Found at i:101413118 original size:87 final size:86
Alignment explanation
Indices: 101412945--101413138 Score: 203
Period size: 87 Copynumber: 2.2 Consensus size: 86
101412935 TATGCTTTGC
* * * * * *
101412945 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGGTCACATATCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCAAGAAGTGAGTGGAGCCTTGGCTCACATATCGAGCTATTTTCAAAA
*
101413010 TCTGTTTTACAAATTTTGTTTT
66 TCTGTTTTA-AAATTTAGTTTT
* * *
101413032 AAAAATCAACTCATATTGCAAGAAGTGAGTGGAGCCTTGGCTCACGT-GCTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCAAGAAGTGAGTGGAGCCTTGGCTCACATATC-GAGCTATTTTCAAA
* *
101413096 TTCTGTTTT-TAATGTCTAGTTTT
65 ATCTGTTTTAAAAT-T-TAGTTTT
* *
101413119 AAAGAGTCAATTCATATTGC
1 AAA-AATCAACTCATATTGC
101413139 GAAAAATTAG
Statistics
Matches: 89, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
85 3 0.03
86 2 0.02
87 70 0.79
88 14 0.16
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCAAGAAGTGAGTGGAGCCTTGGCTCACATATCGAGCTATTTTCAAAA
TCTGTTTTAAAATTTAGTTTT
Found at i:101414523 original size:22 final size:23
Alignment explanation
Indices: 101414493--101414559 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 23
101414483 TTTCTACATG
*
101414493 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
101414515 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
101414540 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
101414560 TTTATATCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:101414650 original size:25 final size:24
Alignment explanation
Indices: 101414622--101414677 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
101414612 GTTATATTTT
*
101414622 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
101414647 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
101414670 CACTATTA
1 CACTATTA
101414678 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:101415642 original size:3 final size:3
Alignment explanation
Indices: 101415634--101415662 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
101415624 AAATTAACAT
101415634 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
101415663 GGCCATGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:101429323 original size:206 final size:205
Alignment explanation
Indices: 101428968--101429415 Score: 788
Period size: 206 Copynumber: 2.2 Consensus size: 205
101428958 GACATATCTA
*
101428968 ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCA
1 ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATATTCACTTTGATGGAGAGCA
101429033 GACACATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCT
66 GACACATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCT
*
101429098 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAACAA
131 TGTGTTTACAAAGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAACAA
101429163 ATCTAAGATG
196 ATCTAAGATG
* *
101429173 ATTTTGTCGTCTTTGTATCGTCAGAGAACGAATCGAAGTTTGGCATATTCGCTTTGATGGAGAGC
1 A-TTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATATTCACTTTGATGGAGAGC
* *
101429238 AGACACATAGCGGATCTCGTCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCC
65 AGACACATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCC
* *
101429303 TTGTGTTTACAAAGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTATGAGAAAGCA
130 TTGTGTTTACAAAGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAACA
101429368 AATCTAAGATG
195 AATCTAAGATG
* * *
101429379 ATTTGTCGTCTCTGTATCGTCAGGGAACAAATTGAAG
1 ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAG
101429416 AAATAGTTTT
Statistics
Matches: 230, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
205 33 0.14
206 197 0.86
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (205 bp):
ATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATATTCACTTTGATGGAGAGCA
GACACATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCT
TGTGTTTACAAAGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAACAA
ATCTAAGATG
Found at i:101429611 original size:132 final size:132
Alignment explanation
Indices: 101429450--101429732 Score: 421
Period size: 132 Copynumber: 2.2 Consensus size: 132
101429440 AGACGGGGGG
* *
101429450 CAGATCAAAGATAGCAGATATCGACTTCCTGA-G-TTACAGTGAAGCAGATCGAAGATTTCAGCA
1 CAGATCGAAGATAGCAGATCTCGACTTCCT-ATGCTTACAGTGAAGCAGATCGAAGATTTCAGCA
101429513 TGGCATCCCTGTGCTTATAGGGAACAAGTGGAAAAACAGCAGATTTGGCAGCCCTGTGCTTATAG
65 TGGCATCCCTGTGCTTATAGGGAACAAGTGG-AAAACAGCAGATTTGGCAGCCCTGTGCTTATAG
101429578 GGAA
129 GGAA
*
101429582 CAGATCGAAGATAGCAGATCT-GACATTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCTGCA
1 CAGATCGAAGATAGCAGATCTCGAC-TTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCAGCA
* * * * * * *
101429646 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCTGTGTTTATAGG
65 TGGCATCCCTGTGCTTATAGGGAACAAGTGGAAAACAGCAGATTTGGCAGCCCTGTGCTTATAGG
101429711 GAA
130 GAA
101429714 CAGATCGAAGA-AGCAGATC
1 CAGATCGAAGATAGCAGATC
101429733 GAAGAACTCA
Statistics
Matches: 138, Mismatches: 10, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
131 12 0.09
132 68 0.49
133 58 0.42
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (132 bp):
CAGATCGAAGATAGCAGATCTCGACTTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCAGCAT
GGCATCCCTGTGCTTATAGGGAACAAGTGGAAAACAGCAGATTTGGCAGCCCTGTGCTTATAGGG
AA
Found at i:101429617 original size:44 final size:44
Alignment explanation
Indices: 101429513--101429732 Score: 198
Period size: 44 Copynumber: 5.0 Consensus size: 44
101429503 GATTTCAGCA
* * * *
101429513 TGGCATCCCTGTGCTTATAGGGAACA-AGTGGAAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAGA-TCG-AAGATAGCAGATC
*
101429558 TGGCAGCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
* * * * * ** *
101429602 TGACATTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCTG--C
1 TGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAGATC
* * * *
101429645 ATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGTAGATT
1 -TGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATC
*
101429690 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGA-AGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
101429733 GAAGAACTCA
Statistics
Matches: 139, Mismatches: 29, Indels: 16
0.76 0.16 0.09
Matches are distributed among these distances:
42 1 0.01
43 17 0.12
44 78 0.56
45 42 0.30
46 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATC
Found at i:101429732 original size:13 final size:13
Alignment explanation
Indices: 101429714--101429738 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101429704 TTATAGGGAA
101429714 CAGATCGAAGAAG
1 CAGATCGAAGAAG
101429727 CAGATCGAAGAA
1 CAGATCGAAGAA
101429739 CTCAAAACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08
Consensus pattern (13 bp):
CAGATCGAAGAAG
Found at i:101430866 original size:34 final size:33
Alignment explanation
Indices: 101430828--101430910 Score: 102
Period size: 31 Copynumber: 2.6 Consensus size: 33
101430818 AAAAAAAGAG
***
101430828 AAAATAAAGTATGGTTTTAATTAATAATAAAAAC
1 AAAATAAAGTATGG-GGGAATTAATAATAAAAAC
101430862 AAAAT--AGTATGGGGGAATTAATAATAAAAAC
1 AAAATAAAGTATGGGGGAATTAATAATAAAAAC
101430893 AAAAT-AA-TATGGGGGAAT
1 AAAATAAAGTATGGGGGAAT
101430911 AGTTTTAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
31 32 0.71
32 8 0.18
34 5 0.11
ACGTcount: A:0.54, C:0.02, G:0.17, T:0.27
Consensus pattern (33 bp):
AAAATAAAGTATGGGGGAATTAATAATAAAAAC
Found at i:101430884 original size:31 final size:31
Alignment explanation
Indices: 101430846--101430910 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
101430836 GTATGGTTTT
*
101430846 AATTAATAATAAAAACAAAATAGTATGGGGG
1 AATTAATAATAAAAACAAAATAATATGGGGG
101430877 AATTAATAATAAAAACAAAATAATATGGGGG
1 AATTAATAATAAAAACAAAATAATATGGGGG
101430908 AAT
1 AAT
101430911 AGTTTTAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.57, C:0.03, G:0.17, T:0.23
Consensus pattern (31 bp):
AATTAATAATAAAAACAAAATAATATGGGGG
Found at i:101430958 original size:39 final size:38
Alignment explanation
Indices: 101430877--101430984 Score: 162
Period size: 40 Copynumber: 2.8 Consensus size: 38
101430867 AGTATGGGGG
*
101430877 AATTAATAATAAAAACAAAATAATATGGGGGAATAGTTTT
1 AATTAATAAT-AAAACAAAATAGTAT-GGGGAATAGTTTT
101430917 AATTAATAATGAAAACAAAATAGTATGGGGAATAGTTTT
1 AATTAATAAT-AAAACAAAATAGTATGGGGAATAGTTTT
* *
101430956 AATTAATAATAAAACAAAGTAGCATGGGG
1 AATTAATAATAAAACAAAATAGTATGGGG
101430985 GGAGTGGAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 17 0.27
39 23 0.36
40 24 0.38
ACGTcount: A:0.51, C:0.04, G:0.18, T:0.28
Consensus pattern (38 bp):
AATTAATAATAAAACAAAATAGTATGGGGAATAGTTTT
Found at i:101436651 original size:40 final size:40
Alignment explanation
Indices: 101436495--101436652 Score: 196
Period size: 41 Copynumber: 3.9 Consensus size: 40
101436485 AAAAATGCCG
101436495 CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGTCT
1 CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACG-CT
**
101436536 CAAAAGGTAAAGCAATAGCGTTGTTTTTCTCATAAACGCT
1 CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGCT
**
101436576 GCAAAAGGTAAAGCAATAGTAGCGTTTTT-TCATAAACGCAT
1 -CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGC-T
* * *
101436617 -TAAAGGTAAAGCAATAGTGGCATTTTTC-CTATAAAC
1 CAAAAGGTAAAGCAATAGCGGCGTTTTTCTC-ATAAAC
101436653 TTAGCAAATA
Statistics
Matches: 104, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
39 25 0.24
40 18 0.17
41 61 0.59
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Consensus pattern (40 bp):
CAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGCT
Found at i:101436660 original size:80 final size:82
Alignment explanation
Indices: 101436494--101436652 Score: 209
Period size: 80 Copynumber: 2.0 Consensus size: 82
101436484 GAAAAATGCC
* ***
101436494 GCAAAAGGTAAAGCAATAGCGGCGTTTTTCTCATAAACGTCTCAAAAGGTAAAGCAATAGCGTTG
1 GCAAAAGGTAAAGCAATAGCAGCGTTTTTCTCATAAACGTCTCAAAAGGTAAAGCAATAGCGGCA
101436559 TTTTTCTCATAAACGCT
66 TTTTTCTCATAAACGCT
* * *
101436576 GCAAAAGGTAAAGCAATAGTAGCGTTTTT-TCATAAACG-CAT-TAAAGGTAAAGCAATAGTGGC
1 GCAAAAGGTAAAGCAATAGCAGCGTTTTTCTCATAAACGTC-TCAAAAGGTAAAGCAATAGCGGC
101436638 ATTTTTC-CTATAAAC
65 ATTTTTCTC-ATAAAC
101436653 TTAGCAAATA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
79 1 0.01
80 30 0.44
81 10 0.15
82 27 0.40
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.28
Consensus pattern (82 bp):
GCAAAAGGTAAAGCAATAGCAGCGTTTTTCTCATAAACGTCTCAAAAGGTAAAGCAATAGCGGCA
TTTTTCTCATAAACGCT
Found at i:101436682 original size:42 final size:42
Alignment explanation
Indices: 101436630--101436713 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
101436620 AGGTAAAGCA
*
101436630 ATAGTGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
1 ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
*
101436672 ATAGCGGCATTTTTCCTATAAACTTCGCAAATATTTTTTTAC
1 ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
101436714 TTTTATTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.44
Consensus pattern (42 bp):
ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
Found at i:101436792 original size:34 final size:36
Alignment explanation
Indices: 101436748--101436815 Score: 95
Period size: 34 Copynumber: 1.9 Consensus size: 36
101436738 ATAGCCTTAG
*
101436748 TTTTTTCCTAAA-TTAGTTTCCC-AAAACCCTTAAA
1 TTTTTCCCTAAATTTAGTTTCCCTAAAACCCTTAAA
* *
101436782 TTTTTCCCTAAATTTATTTTCCCTAAATCCCTTA
1 TTTTTCCCTAAATTTAGTTTCCCTAAAACCCTTA
101436816 GGTTTTTTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 11 0.38
35 9 0.31
36 9 0.31
ACGTcount: A:0.28, C:0.25, G:0.01, T:0.46
Consensus pattern (36 bp):
TTTTTCCCTAAATTTAGTTTCCCTAAAACCCTTAAA
Found at i:101436822 original size:36 final size:33
Alignment explanation
Indices: 101436742--101436840 Score: 99
Period size: 36 Copynumber: 2.8 Consensus size: 33
101436732 ATTTTGATAG
* *
101436742 CCTTAGTTTTTTCCTAAATTAGTTTCCCAAAAC
1 CCTTAGTTTTTCCCTAAATTATTTTCCCAAAAC
* *
101436775 CCTTAAATTTTTCCCTAAATTTATTTTCCCTAAATC
1 CCTT-AGTTTTTCCCTAAA-TTATTTTCCC-AAAAC
* *
101436811 CCTTAGGTTTTTTCCCCAAATCATTTTCCC
1 CCTTA-G-TTTTTCCCTAAATTATTTTCCC
101436841 CATCCCATTG
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
33 4 0.07
34 12 0.22
35 10 0.19
36 17 0.31
37 11 0.20
ACGTcount: A:0.24, C:0.27, G:0.04, T:0.44
Consensus pattern (33 bp):
CCTTAGTTTTTCCCTAAATTATTTTCCCAAAAC
Found at i:101439728 original size:25 final size:26
Alignment explanation
Indices: 101439700--101439750 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
101439690 TTTTATAAAT
101439700 ATTATCATAAAAATAAATATT-TTTA
1 ATTATCATAAAAATAAATATTGTTTA
*
101439725 ATTATCATAAAGATAAATATTGTTTA
1 ATTATCATAAAAATAAATATTGTTTA
101439751 TCTATATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (26 bp):
ATTATCATAAAAATAAATATTGTTTA
Found at i:101440060 original size:13 final size:13
Alignment explanation
Indices: 101440044--101440070 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101440034 TAATTAAAGG
101440044 GTTAAAATTTAAA
1 GTTAAAATTTAAA
101440057 GTTAAAATTTAAA
1 GTTAAAATTTAAA
101440070 G
1 G
101440071 ATGATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:101442222 original size:18 final size:18
Alignment explanation
Indices: 101442175--101442224 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
101442165 CCCATTAAGC
101442175 CCCCCCCAAAAAAACCTAA
1 CCCCCCC-AAAAAACCTAA
***
101442194 CCCCAAAAAAAAACCTAA
1 CCCCCCCAAAAAACCTAA
101442212 CCCCCCCAAAAAA
1 CCCCCCCAAAAAA
101442225 AACCAAGAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.52, C:0.44, G:0.00, T:0.04
Consensus pattern (18 bp):
CCCCCCCAAAAAACCTAA
Found at i:101444740 original size:12 final size:12
Alignment explanation
Indices: 101444723--101444758 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
101444713 ATTCATTTGA
101444723 CATTCATGCATT
1 CATTCATGCATT
*
101444735 CATTCATGCATC
1 CATTCATGCATT
*
101444747 CATTCATTCATT
1 CATTCATGCATT
101444759 GCATATCTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:101444752 original size:16 final size:17
Alignment explanation
Indices: 101444731--101444762 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
101444721 GACATTCATG
101444731 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
101444747 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
101444763 ATCTCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:101453121 original size:72 final size:73
Alignment explanation
Indices: 101453035--101453324 Score: 366
Period size: 72 Copynumber: 3.9 Consensus size: 73
101453025 TTTTCAAGGG
* *
101453035 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACATGTTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG
101453100 TTTTC-AA
66 TTTTCAAA
* * * * *
101453107 AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG
101453172 TCTTTCAAA
66 T-TTTCAAA
* * * * *
101453181 AAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGGACAAGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG
*
101453246 TTGTCAAA
66 TTTTCAAA
* * ** * *
101453254 AAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAATTTC
*
101453319 CGTTTT
64 TGTTTT
101453325 TCAATTTTTG
Statistics
Matches: 189, Mismatches: 25, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
72 61 0.32
73 44 0.23
74 58 0.31
75 26 0.14
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG
TTTTCAAA
Found at i:101453236 original size:146 final size:148
Alignment explanation
Indices: 101453035--101453317 Score: 408
Period size: 146 Copynumber: 1.9 Consensus size: 148
101453025 TTTTCAAGGG
* * * *
101453035 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACATGTTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATACTGCGAAAGATGAGTTGAGCCTCAAGACAAGCTGAGGTAATTTCAATTTCTG
* * * *
101453100 TTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTT
66 TTGTCAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGCACACGCTGAGGTATTTT
101453163 CAATTTTTGTCTTTCAAA
131 CAATTTTTGTCTTTCAAA
* *
101453181 AAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGGACAAGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATACTGCGAAAGATGAGTTGAGCCTCAAGACAAGCTGAGGTAATTTCAATTTCTG
* * ** *
101453246 TTGTCAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
66 TTGTCAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAG-CACACGCTGAGGTATTT
101453311 TCAATTT
130 TCAATTT
101453318 CCGTTTTTCA
Statistics
Matches: 119, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
146 63 0.53
147 34 0.29
149 22 0.18
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (148 bp):
AAATCAACTCATACTGCGAAAGATGAGTTGAGCCTCAAGACAAGCTGAGGTAATTTCAATTTCTG
TTGTCAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGCACACGCTGAGGTATTTT
CAATTTTTGTCTTTCAAA
Found at i:101453396 original size:94 final size:94
Alignment explanation
Indices: 101453251--101453422 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 94
101453241 TTCTGTTGTC
* * *
101453251 AAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCTGAGCTATTTTCAAT
*
101453316 TTCCGTTTTTCAATTTTTGCCTTTCAAAA
66 TTCCGTCTTTCAATTTTTGCCTTTCAAAA
* * *
101453345 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCTGAGCTATTTTCAA
*
101453409 TTTCTGTCTTTCAA
65 TTTCCGTCTTTCAA
101453423 AAAATCAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 2 0.03
94 67 0.97
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (94 bp):
AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCTGAGCTATTTTCAAT
TTCCGTCTTTCAATTTTTGCCTTTCAAAA
Found at i:101453452 original size:76 final size:75
Alignment explanation
Indices: 101453345--101454389 Score: 563
Period size: 76 Copynumber: 13.5 Consensus size: 75
101453335 CCTTTCAAAA
* *
101453345 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
101453410 TTCTGTCTTTC
66 TTCTGT-TTTC
* * * * * *
101453421 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAG-CTTCAGATCACACACTAAAGTATTTTTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGGTA--TTTTC
101453485 AATTT-TGTTTT-
63 AATTTCTGTTTTC
**
101453496 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAG-TCACA-TATCGAGGTATTTTCA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-GCTCACACGCT-GAGGTATTTTC-
*
101453558 AAATCTACTTTTCAAGTTAAGTTTC
63 --A---A--TTTC-TG-T---TTTC
* * * *
101453583 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTAAGCTAATTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
*
101453647 TTCTGTTGTC
66 TTCTGTTTTC
* * * * *
101453657 AAAAAAACCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCA
101453721 ATTT-TCGTTTTTC
64 ATTTCT-G-TTTTC
**** *** * * * * * *
101453734 AATTTCTGCCTTTCAAAAAAAT-CGACTCATTGCGAGAGGTGAG--TTGAGCCTTGGCTCACGCG
1 AAAAAAT-CAACTC---ATATTGCGA--GA--G-GTGAGTTGAGCCTTG-G-C-T--CACAC--G
* *
101453796 CTGAGCTAATTTCAATTTCTGTTTTC
50 CTGAGGTATTTTCAATTTCTGTTTTC
* * * *
101453822 -AAAAATCAACTCATATTGCGATA-GTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTCAA-
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
101453882 -TCTGTTTTC
66 TTCTGTTTTC
* ** * ** * *
101453891 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAACC-T--CAAGACACGTTGAGGTAATTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCTGAGGTATTTTCAA
101453952 TTTCTGTTTTC
65 TTTCTGTTTTC
* ** ** *
101453963 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC-T--CAAGACACGTTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCTGAGGTATTTTCAA
101454024 TTTCTGTTTTC
65 TTTCTGTTTTC
* * * * *
101454035 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGTCTCGGTTCACATGCTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
*
101454100 TTCCGTCTTTC
66 TTCTGT-TTTC
* * *
101454111 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGGTA------T
* *
101454175 TAATTCAATTTATATTTTTC
59 T--TTCAATTTCT-GTTTTC
**
101454195 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAG-TCACA-TATCGAGGTATTTTCA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-GCTCACACGCT-GAGGTATTTTC-
*
101454257 AAATCTTCTTTTCAAGTTAAGTTT
63 -AAT-TTC---T---GTT---TTC
* ** **
101454281 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAAGACACATTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCTGAGGTATTTTCAA
101454343 TTTCTGTCTTTC
65 TTTCTGT-TTTC
**
101454355 AAAAAAATCAGTTCATATTGCGAGAGGTGAGTTGA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
101454390 ACCTCAAGAC
Statistics
Matches: 768, Mismatches: 111, Indels: 181
0.72 0.10 0.17
Matches are distributed among these distances:
69 30 0.04
70 30 0.04
71 15 0.02
72 84 0.11
73 35 0.05
74 47 0.06
75 69 0.09
76 159 0.21
77 19 0.02
78 22 0.03
79 9 0.01
80 7 0.01
81 4 0.01
82 10 0.01
83 56 0.07
84 28 0.04
85 16 0.02
86 11 0.01
87 93 0.12
88 6 0.01
89 17 0.02
90 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (75 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
TTCTGTTTTC
Found at i:101453456 original size:170 final size:163
Alignment explanation
Indices: 101453159--101453468 Score: 424
Period size: 170 Copynumber: 1.9 Consensus size: 163
101453149 CGTTGAGGTA
*
101453159 TTTTCAATTTTTGTCTTTCAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGGACAA
1 TTTTCAATTTTTGCCTTTCAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGGACAA
* * *
101453224 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCT
66 GCTGAGCTAATTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCT
*
101453289 CAGGTCACACGCTGAGGTATTTTCAATTTCCGT
131 CAGATCACACGCTGAGGTATTTTCAATTTCCGT
* * *
101453322 TTTTCAATTTTTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG
1 TTTTCAATTTTTGCCTTTC----AAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGG
** * *
101453386 CTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGCGAG
62 ---ACAAGCTGAGCTAATTTCAATTTCTGT-TGTCAAAAAATCAACTCATATTGCGAGAGGCGAG
*
101453451 TTGAGCTTCAGATCACAC
123 TTGAGCCTCAGATCACAC
101453469 ACTAAAGTAT
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
163 18 0.14
166 2 0.02
167 36 0.29
169 23 0.18
170 47 0.37
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (163 bp):
TTTTCAATTTTTGCCTTTCAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGGACAA
GCTGAGCTAATTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCT
CAGATCACACGCTGAGGTATTTTCAATTTCCGT
Found at i:101453627 original size:237 final size:233
Alignment explanation
Indices: 101453101--101454869 Score: 1018
Period size: 237 Copynumber: 7.3 Consensus size: 233
101453091 CAATTTCTGT
* ** ** *
101453101 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC-T--CAAGACACGTTGAGGTATTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCTGAGGTATTTT
* * * *
101453163 CAATTTTTGTCTTTCAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCAGGA-CA-A-G
65 CAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GATCACACA
* * * * *
101453225 CTGAGGTA--ATTTCAATTTCTGTTGTCAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCC
129 CTGAGGTATTTTTTCAATTTCTGTT-T-TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* ** * * *
101453288 -TCAGGTCACA-CGCTGAGGTATTTTCAATTTCCGTTTTTCAATTTTTG
192 TTGA-GTCACATATC-GAGGTATTTTCAA-AT-C-ATTTTCAA--GTTG
* *
101453335 CCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGC
1 --TTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGG
* *
101453400 TATTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCTTCAGATC
59 TATTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
* *
101453465 ACACACTAAAGTATTTTTTCAATTT-TGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
124 ACACACTGAGGTATTTTTTCAATTTCTGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
101453529 GCCTTGAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAGTTAAG
189 GCCTTGAGTCACATATCGAGGTATTTTC-AAATC-A-TTTTCAAGTT--G
* * * *
101453579 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTAAGCTAATTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTC
* * * * * *
101453644 AATTTCTGT-TGTCAAAAAAACCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
66 AATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACAC
* * *
101453708 CGAGGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAAAAAAATCGACTC--ATTGCGAGA
130 TGAGG-----T--A---T--TTTTTCAATTTCTG--TTT--TAAAAATCAACTCATATTGCGAGA
*** * * *
101453771 GGTGAGTTGAGCCTTG-GCTCAC-GCGCTGAGCTAATTTC--A--A-TTTC-TG-T-
179 GGTGAGTTGAGCCTTGAG-TCACATATC-GAGGTATTTTCAAATCATTTTCAAGTTG
* * * *
101453818 TTTCAAAAATCAACTCATATTGCGATA-GTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTC
* ** * * **
101453880 AA--TCTGT-TTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCA-A-GACACGTT
66 AATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACT
* * ** **
101453939 GAGGTA--ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
131 GAGGTATTTTTTCAATTTCTGTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
* * *
101454002 AGACACGT-T-GAGGTATTTTC--A--A-TTTC-TG-T-
195 AGTCACATATCGAGGTATTTTCAAATCATTTTCAAGTTG
* * * * *
101454031 TTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGTCTCGGTTCACATGCTGAGGTATTTT
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTT
* *
101454096 CAATTTCCGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
65 CAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACAC
* *
101454161 TGAGGTATTTTTTTTAATTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
130 TGAGGTA----TTTT--TTCAATTTCT-GTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTT
*
101454226 GAGCCTTGAGTCACATATCGAGGTATTTTCAAAATCTTCTTTTCAAGTTAAG
187 GAGCCTTGAGTCACATATCGAGGTATTTTC-AAATC--ATTTTCAAGTT--G
** **
101454278 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAAGACACATTGAGGTATTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCTGAGGTATTTT
** * * **
101454340 CAATTTCTGTCTTTCAAAAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACCTCAAGA-CGCTG
65 CAATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGATCACAC
* *** * *
101454404 AGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTGG
128 A-CTGAGGT--A--T-T-TT-TTCAATTTCTGT-TTT---AAAAATCAACTCATATTGCGAGAGG
* ** * *
101454469 TGAGTTGAGCCTTGACTCACA-CGCTGAGGTATTTTCAAATTCTGTTTTCAAAATCTTG
181 TGAGTTGAGCCTTGAGTCACATATC-GAGGTATTTTCAAA-TC-ATTTTC--AA-GTTG
* * *
101454527 TTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG---ACACGCTAAGG
1 --TTT-C---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGG
*
101454589 TATTTTCAATTTCTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGT
59 TATTTTCAATTTC------TGTC---------TT-TC-AAAAAATCAACTCATATTGCGAGAGGT
* * * * * * * * *
101454654 GAGTTGAGTCTCAGGTCGCACGCCGAGGTATTTTCAATTGATTTTTTTTTATGCTTTGCAAAAAT
107 GAGTTGAGCCTCAGATCACACACTGAGGTATTTT---TTCA-----ATTTCTG-TTT-TAAAAAT
* * *
101454719 CAACTCATATTACGAGAGGTGAGTTGAG-CTTCGGGTCACATATCGAGGTATTTTCAAAATCTGT
162 CAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GAGTCACATATCGAGGTATTTTC-AAATC-AT
*
101454783 TTTACAAATTTTG
224 TTT-C-AA-GTTG
* * * ** *
101454796 TTTTAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTC
101454861 AATTTCTGT
66 AATTTCTGT
101454870 TTTTAATGTC
Statistics
Matches: 1217, Mismatches: 179, Indels: 251
0.74 0.11 0.15
Matches are distributed among these distances:
213 32 0.03
214 24 0.02
215 39 0.03
216 13 0.01
217 18 0.01
219 4 0.00
220 4 0.00
221 34 0.03
222 1 0.00
223 12 0.01
225 1 0.00
229 1 0.00
230 9 0.01
231 9 0.01
232 77 0.06
233 1 0.00
234 19 0.02
236 24 0.02
237 116 0.10
238 15 0.01
239 26 0.02
241 33 0.03
242 15 0.01
243 69 0.06
244 95 0.08
245 50 0.04
246 49 0.04
247 27 0.02
248 13 0.01
249 69 0.06
250 4 0.00
251 7 0.01
252 42 0.03
254 11 0.01
255 56 0.05
259 2 0.00
261 3 0.00
262 2 0.00
263 34 0.03
264 2 0.00
265 21 0.02
266 4 0.00
267 3 0.00
268 4 0.00
269 63 0.05
270 11 0.01
271 48 0.04
272 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (233 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTC
AATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACT
GAGGTATTTTTTCAATTTCTGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGA
GTCACATATCGAGGTATTTTCAAATCATTTTCAAGTTG
Found at i:101453718 original size:163 final size:162
Alignment explanation
Indices: 101453416--101453881 Score: 506
Period size: 163 Copynumber: 2.9 Consensus size: 162
101453406 CAATTTCTGT
* * * * *
101453416 CTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAG-CTTCAGATCACACACTAAAG-TAT
1 CTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACGCGCT-AAGCTA-
* * * *
101453479 TTTTTCAATTT-TGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACAT
63 -ATTTCAATTTCTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GTCACAC
**
101453543 ATCGAGGTATTTTCAAAATCTAC-TTTTCAAGTTAAG
126 GCCGAGGTATTTTCAAAATCTACGTTTTCAAGTTAAG
101453579 -TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTAAGCTAATT
1 CTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTAAGCTAATT
* * *
101453642 TCAATTTCTGTTGTCAAAAAAACCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
66 TCAATTTCTGTT-TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACACG
* * * **
101453707 CCGAGGTATTTTC--AATTTTCGTTTTTCAATTTCTG
127 CCGAGGTATTTTCAAAATCTACG-TTTTCAAGTTAAG
* *
101453742 CCTTTCAAAAAAATCGACTC--ATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTAA
1 -CTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTAAGCTAA
* *
101453805 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGATA-GTGAGTTGAGCCTCGG-GACACGC
64 TTTCAATTTCTG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACACGC
* *
101453868 TGAGGTAATTTCAA
128 CGAGGTATTTTCAA
101453882 TCTGTTTTCA
Statistics
Matches: 259, Mismatches: 28, Indels: 33
0.81 0.09 0.10
Matches are distributed among these distances:
159 9 0.03
160 23 0.09
161 51 0.20
162 20 0.08
163 82 0.32
164 1 0.00
165 60 0.23
166 2 0.01
167 11 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (162 bp):
CTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTAAGCTAATT
TCAATTTCTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACACGCCGA
GGTATTTTCAAAATCTACGTTTTCAAGTTAAG
Found at i:101453820 original size:89 final size:89
Alignment explanation
Indices: 101453640--101453813 Score: 219
Period size: 89 Copynumber: 1.9 Consensus size: 89
101453630 GCTAAGCTAA
101453640 TTTCAATTTCTGTTGTCAAAAAAACCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAACCAACTCG-ATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* *
101453705 CGCCGAGGTATTTTCAATTTTCGTT
65 CGCCGAGCTAATTTCAATTTTCGTT
* * * *
101453730 TTTCAATTTCTGCCTT-TCAAAAAAATCGACTC-ATTGCGAGAGGTGAGTTGAGCCT-TGGCTCA
1 TTTCAATTTCTG--TTGTCAAAAAAACCAACTCGATTGCGAGAGGCGAGTTGAGCCTCAGG-TCA
* *
101453792 CGCGCTGAGCTAATTTCAATTT
63 CACGCCGAGCTAATTTCAATTT
101453814 CTGTTTTCAA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
88 2 0.03
89 43 0.59
90 12 0.16
91 14 0.19
92 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (89 bp):
TTTCAATTTCTGTTGTCAAAAAAACCAACTCGATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
GCCGAGCTAATTTCAATTTTCGTT
Found at i:101453982 original size:72 final size:72
Alignment explanation
Indices: 101453794--101454429 Score: 492
Period size: 72 Copynumber: 8.4 Consensus size: 72
101453784 TTGGCTCACG
* *
101453794 CGCTGAGCTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGA-TAGTGAGTTGAGCCT
1 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
**
101453858 CGGGACA
66 CAAGACA
* * *
101453865 CGCTGAGGTAATTTCAA--TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCT
1 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
101453928 CAAGACA
66 CAAGACA
* * *
101453935 CGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
1 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
101454000 CAAGACA
66 CAAGACA
* * * * *
101454007 CGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGTC
1 CGCTGAGGTAATTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
*
101454072 TC-GGTTCACA
65 TCAAG---ACA
* * * *
101454082 TGCTGAGGTATTTTCAATTTCCGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CGCTGAGGTAATTTCAATTTCTGT-TTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
* *
101454147 TTCAGATCACA
64 CTCA-A-GACA
* * * * *
101454158 CACTGAGGTATTTTTTTTAATTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
1 CGCTGAGGTA--------ATTTCAATTTCT-GTTTTCAAAAATCAACTCATATTGCGAGAAGTGA
** *
101454223 GTTGAGCCTTGAGTCA
57 GTTGAGCCTCAAGACA
** * **
101454239 CATATCGAGGTATTTTCAAAATCTTCTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGCGAG
1 C-GCT-GAGGTAATTTC--AAT-TTC---T---GTT---TTCAAA-AATCAACTCATATTGCGAG
*
101454304 AGGTGAGTTGAGCCTCAAGACA
51 AAGTGAGTTGAGCCTCAAGACA
** * ** * *
101454326 CATTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGTTCATATTGCGAGAGGTGAGTTGAA
1 CGCTGAGGTAATTTCAATTTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
101454391 CCTCAAG--A
63 CCTCAAGACA
** *
101454399 CGCTGAGGTGTTTTCCATTTCTGTTCTTCAA
1 CGCTGAGGTAATTTCAATTTCTGTT-TTCAA
101454430 TTTCTGTGTT
Statistics
Matches: 469, Mismatches: 58, Indels: 76
0.78 0.10 0.13
Matches are distributed among these distances:
69 29 0.06
70 33 0.07
71 18 0.04
72 81 0.17
73 57 0.12
74 2 0.00
75 62 0.13
76 55 0.12
77 4 0.01
78 2 0.00
79 1 0.00
81 4 0.01
82 5 0.01
83 48 0.10
84 12 0.03
85 12 0.03
86 5 0.01
87 39 0.08
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (72 bp):
CGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
CAAGACA
Found at i:101454240 original size:83 final size:82
Alignment explanation
Indices: 101454107--101454339 Score: 253
Period size: 83 Copynumber: 2.8 Consensus size: 82
101454097 AATTTCCGTC
*
101454107 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTT
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG-TCACACA-TGAGGTATTT
* *
101454171 T-T-TT-TAATTCAATTTATATT
63 TATCTTCT-ATTCAAGTTA-A-G
* *
101454191 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTCACACAT-GAGGTATTTT-
*
101454256 AAAATCTTCTTTTCAAGTTAAG
64 ---ATCTTCTATTCAAGTTAAG
*
101454278 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACATTGAGGTATTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTCACACA-TGAGGTATTTT
101454340 CAATTTCTGT
Statistics
Matches: 131, Mismatches: 8, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
82 1 0.01
83 50 0.38
84 9 0.07
85 14 0.11
86 1 0.01
87 43 0.33
88 2 0.02
89 10 0.08
90 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (82 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAGTCACACATGAGGTATTTTAT
CTTCTATTCAAGTTAAG
Found at i:101454312 original size:87 final size:86
Alignment explanation
Indices: 101454191--101454838 Score: 371
Period size: 87 Copynumber: 7.5 Consensus size: 86
101454181 AATTTATATT
101454191 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
* *
101454256 AAAATCTTCTTTTCAAGTTAAG
66 AAAATCTT-TTTTCAATTTATG
** *
101454278 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAT-T-GAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
* *
101454341 --AAT-TTCTGTC--TTTCA--
66 AAAATCTTTTTTCAATTT-ATG
* ** * ** ** *
101454356 ---AAAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACCTCAAG--AC-GCT-GAGGTGTTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
* ** * *
101454414 CATTTCTGTTCTTCAATTTCTGTG
66 AAAATCT-TTTTTCAA-TT-TATG
* * * **
101454438 TTTCAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACA-CGCTGAGGTATT
1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATC-GAGGTATT
* * * *
101454502 TTCAAATTCTGTTTTCAAAATCTTGTT
63 TTCAAAATCTTTTTTC--AAT-TTATG
* * * *
101454529 TTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCC-TCAGGACACGCTA---AGGT
1 TTT-C---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGA-GTCAC-ATATCGAGGT
**
101454590 ATTTTCAATTTCTTTTTTTTTCAATTTATG
60 ATTTTCAAAATC---TTTTTTCAATTTATG
* * * ***
101454620 TTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTC-TCAGGTCGCACGCCGAGGTA
1 -TT-TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGA-GTCACATATCGAGGTA
* *
101454684 TTTTC-AATTGATTTTTT---TTTATG
61 TTTTCAAAAT-CTTTTTTCAATTTATG
* *
101454707 CTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGAG-CTTCGGGTCACATATCGAGGTATT
1 -TTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GAGTCACATATCGAGGTATT
*
101454771 TTCAAAATCTGTTTTACAAATTT-TG
63 TTCAAAATCT-TTTTTC-AATTTATG
* * *
101454796 TTTTAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTG
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
101454839 GCTCACGTGC
Statistics
Matches: 444, Mismatches: 68, Indels: 98
0.73 0.11 0.16
Matches are distributed among these distances:
73 13 0.03
75 39 0.09
76 1 0.00
77 3 0.01
79 2 0.00
80 3 0.01
81 4 0.01
82 2 0.00
83 3 0.01
84 1 0.00
85 63 0.14
86 9 0.02
87 124 0.28
88 6 0.01
89 5 0.01
90 13 0.03
91 83 0.19
92 15 0.03
93 49 0.11
94 6 0.01
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (86 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
AAAATCTTTTTTCAATTTATG
Found at i:101454429 original size:73 final size:74
Alignment explanation
Indices: 101454282--101454422 Score: 212
Period size: 75 Copynumber: 1.9 Consensus size: 74
101454272 GTTAAGTTTC
*
101454282 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACA-TGAGGTATTTTCAATTTC
101454347 TGTCTTTCAA
65 TGTCTTTCAA
** * * *
101454357 AAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGC-TGAGGTGTTTTCCATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATGAGGTATTTTCAATTTCT
101454421 GT
66 GT
101454423 TCTTCAATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 19 0.32
75 41 0.68
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATGAGGTATTTTCAATTTCT
GTCTTTCAA
Found at i:101454478 original size:249 final size:244
Alignment explanation
Indices: 101454029--101454836 Score: 636
Period size: 269 Copynumber: 3.2 Consensus size: 244
101454019 TTCAATTTCT
* * *
101454029 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGTCTC-GGTTCACATGCTGAGGTAT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACAT--TGAGGTAT
* * *
101454093 TTTCAATTTCCGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACA
63 TTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-A-CACA
*
101454158 CACTGAGGTATTTTTTTTAATTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
126 CACTGAGGTATTTTTTTTAATTCAATTTATATGTTTCAAAAATCAACTCATATTGCGAGAGGTGA
* * *
101454223 GTTGAGCCTTGAGTCACATATC-GAGGTATTTTCAAAATCTTCTTTTC-AAGT-TAA
191 GTTGAGCCTTGACTCACA-AGCTGAGGTATTTTCAAAATC-TCTTTTCAAAATCT-A
*
101454277 G-TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATTGAGGTATTTT
** * *
101454340 CAATTTCTGTCTTTCAAAAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACCTC-A-AGACGCT
66 CAATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAACACACACT
* ** * * * *
101454403 GAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTG
130 GAGGT-ATTT---TTT-T-TAATTCAATTTATATGTTTC--AAAAATCAACTCATATTGCGAGAG
* * * *
101454468 GTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTCAAAATCTT
187 GTGAGTTGAGCCTTGACTCACAAGCTGAGGTATTTTCAAAATCTCTTTTCAAAATCTA
* ** *
101454526 GTTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGCTAAGGTA
1 G-TTTT-C--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATTGAGGTA
*
101454591 TTTTCAATTTCTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGA
62 TTTTCAATTTC------TGTC---------TT-TC-AAAAAATCAACTCATATTGCGAGAGGTGA
** * * * * ** * ** *
101454656 GTTGAGTCTCAGGTCGCACGCCGAGGTATTTTCAATTGATT-TTTTTTTATGCTTTGCAAAAATC
110 GTTGAACCTCA--ACACACACTGAGGTATTTT-TTTTAATTCAATTTATATG-TTT-CAAAAATC
* ** * *
101454720 AACTCATATTACGAGAGGTGAGTTGAG-CTTCGGGTCACATATC-GAGGTATTTTCAAAATCTGT
170 AACTCATATTGCGAGAGGTGAGTTGAGCCTT-GACTCACA-AGCTGAGGTATTTTCAAAATCTCT
* *
101454783 TTT-ACAAATTTT
233 TTTCA-AAATCTA
* *
101454795 GTTTT--AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
101454837 TGGCTCACGT
Statistics
Matches: 454, Mismatches: 61, Indels: 75
0.77 0.10 0.13
Matches are distributed among these distances:
241 10 0.02
242 3 0.01
243 1 0.00
244 25 0.06
245 38 0.08
246 42 0.09
247 20 0.04
248 8 0.02
249 63 0.14
250 1 0.00
251 3 0.01
252 1 0.00
255 60 0.13
261 3 0.01
263 34 0.07
268 8 0.02
269 72 0.16
270 9 0.02
271 41 0.09
274 3 0.01
275 9 0.02
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (244 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACATTGAGGTATTTT
CAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAACACACACTG
AGGTATTTTTTTTAATTCAATTTATATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTTGACTCACAAGCTGAGGTATTTTCAAAATCTCTTTTCAAAATCTA
Found at i:101454539 original size:91 final size:90
Alignment explanation
Indices: 101454398--101454872 Score: 345
Period size: 91 Copynumber: 5.3 Consensus size: 90
101454388 GAACCTCAAG
* * * * * *
101454398 ACGCTGAGGTGTTTTCCATTTCTGTTCTT-CAATTTCTGTGTTTCAAAAAAATCAGCTCATATTG
1 ACGCTGAGGTATTTTCAAATTCTGTT-TTAAAATTT-TGTTTTTCAAAAAAATCAACTCATATTG
*
101454462 CGAGTGGTGAGTTGAGCCTTGACTCAC
64 CGAGAGGTGAGTTGAGCCTTGACTCAC
*
101454489 ACGCTGAGGTATTTTCAAATTCTGTTTTCAAAATCTTGTTTTTCCAAAAAAAATCAACTCATATT
1 ACGCTGAGGTATTTTCAAATTCTGTTTT-AAAATTTTGTTTTT-C-AAAAAAATCAACTCATATT
* * **
101454554 GCGAGAGGTGAGTTCAGCC-TCA-GGAC
63 GCGAGAGGTGAGTTGAGCCTTGACTCAC
* * * ** *
101454580 ACGCTAAGGTATTTTCAATTTCTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATT
1 ACGCTGAGGTATTTTCAAATTC--TGTTTTAAAATTT-TGTTTTTCAAAAAAATCAACTCATATT
* * * *
101454645 GCGAGAGGTGAGTTGAGTC-TCAGGTCGC
63 GCGAGAGGTGAGTTGAGCCTTGA-CTCAC
* ** * * *
101454673 ACGCCGAGGTATTTTC-AA-T-TGATTTT--TTTTTATGCTTTGC--AAAAATCAACTCATATTA
1 ACGCTGAGGTATTTTCAAATTCTG-TTTTAAAATTT-TGTTTTTCAAAAAAATCAACTCATATTG
**
101454731 CGAGAGGTGAGTTGAG-CTTCGGGTCAC
64 CGAGAGGTGAGTTGAGCCTT-GACTCAC
** *
101454758 A-TATCGAGGTATTTTCAAAATCTGTTTTACAAATTTTG-TTTT---AAAAATCAACTCATATTG
1 ACGCT-GAGGTATTTTCAAATTCTGTTTTA-AAATTTTGTTTTTCAAAAAAATCAACTCATATTG
* * *
101454818 TGAGAAGTGAGTTGAGCCTTGGCTCAC
64 CGAGAGGTGAGTTGAGCCTTGACTCAC
** * *
101454845 GTGCTGAGCTATTTTCAATTTCTGTTTT
1 ACGCTGAGGTATTTTCAAATTCTGTTTT
101454873 TAATGTCTAG
Statistics
Matches: 310, Mismatches: 53, Indels: 46
0.76 0.13 0.11
Matches are distributed among these distances:
84 1 0.00
85 50 0.16
86 2 0.01
87 71 0.23
88 10 0.03
89 6 0.02
90 5 0.02
91 91 0.29
92 13 0.04
93 61 0.20
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (90 bp):
ACGCTGAGGTATTTTCAAATTCTGTTTTAAAATTTTGTTTTTCAAAAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTTGACTCAC
Found at i:101454684 original size:184 final size:180
Alignment explanation
Indices: 101454355--101454690 Score: 442
Period size: 184 Copynumber: 1.8 Consensus size: 180
101454345 TCTGTCTTTC
** * * * * *
101454355 AAAAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAACACGCTAAGGTATTTTCAATTTC
* * * *
101454420 TGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGAC
66 TGTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGAC
*
101454485 TCACACGCTGAGGTATTTTCAAATTCTGTTTTCAAAATCTTGTTTTTCCA
131 TCACACGCCGAGGTATTTTCAAATTCTGTTTTCAAAATCTTGTTTTTCCA
*
101454535 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGCTAAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCA--ACACGCTAAGGTATTTTCAATT
* * *
101454600 TCTTTTTTTTTCAATTTATGT-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTC
64 TC--TGTTCTTCAATTTATGTGTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
101454664 TCAG-GTCGCACGCCGAGGTATTTTCAA
126 T-AGACTCACACGCCGAGGTATTTTCAA
101454691 TTGATTTTTT
Statistics
Matches: 132, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
180 37 0.28
182 20 0.15
183 2 0.02
184 72 0.55
185 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (180 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAACACGCTAAGGTATTTTCAATTTC
TGTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGAC
TCACACGCCGAGGTATTTTCAAATTCTGTTTTCAAAATCTTGTTTTTCCA
Found at i:101454886 original size:87 final size:84
Alignment explanation
Indices: 101454357--101454910 Score: 313
Period size: 87 Copynumber: 6.3 Consensus size: 84
101454347 TGTCTTTCAA
** * ** * *
101454357 AAAAATCAGTTCATATTGCGAGAGGTGAGTTGAACC-T--CAAGACGCTGAGGTGTTTTCCATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGCTGAGGTATTTTCAATTT
*
101454419 CTGTTCTTCAATTTCT-GTGTTT
65 CTGTT-TTTAA-TTCTAGT-TTT
* * *
101454441 CAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT--CACGCTGAGGTATTTTCA
* * * *
101454506 AATTCTGTTTTCAAAATCTTGTTTTT
61 ATTTCTGTTTT-TAATTCTAG-TTTT
* * * *
101454532 CCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG-ACACGCTAAGGTATTTTC
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCTGAGGTATTTTC
*
101454596 AATTTCTTTTTTTTTCAATT-TATGTTTGT
60 AATTTC--TGTTTTT-AATTCTA-GTTT-T
* * * *
101454625 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGTCGCACGCCGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CTCACGCTGAGGTATTTTCA
** *
101454690 ATTGAT-TTTTT--TT-TATGCTTTGC
61 ATTTCTGTTTTTAATTCTA-G-TTT-T
* * ** *
101454713 AAAAATCAACTCATATTACGAGAGGTGAGTTGAG-CTTCGGGTCACATATCGAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCAC-GCT-GAGGTATTTTCAAT
* * *
101454777 ATCTGTTTTACAAATT-TTGTTTT
63 TTCTGTTTT--TAATTCTAGTTTT
* * *
101454800 AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC--GCTGAGGTATTTTCAATT
101454865 TCTGTTTTTAATGTCTAGTTTT
64 TCTGTTTTTAAT-TCTAGTTTT
* *
101454887 AAAGAGTCAATTCATATTGCGAGA
1 AAA-AATCAACTCATATTGCGAGA
101454911 AATGAGTTAA
Statistics
Matches: 374, Mismatches: 61, Indels: 63
0.75 0.12 0.13
Matches are distributed among these distances:
83 3 0.01
84 4 0.01
85 50 0.13
86 5 0.01
87 105 0.28
88 29 0.08
89 1 0.00
90 14 0.04
91 92 0.25
92 5 0.01
93 65 0.17
94 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (84 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCTGAGGTATTTTCAATTTC
TGTTTTTAATTCTAGTTTT
Found at i:101455596 original size:20 final size:18
Alignment explanation
Indices: 101455548--101455582 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
101455538 AAGCCCCCCT
101455548 AAAAAAAAACCTAACCCA
1 AAAAAAAAACCTAACCCA
101455566 AAAAAAAAACCTAACCC
1 AAAAAAAAACCTAACCC
101455583 CCCCAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.66, C:0.29, G:0.00, T:0.06
Consensus pattern (18 bp):
AAAAAAAAACCTAACCCA
Found at i:101457570 original size:10 final size:10
Alignment explanation
Indices: 101457543--101457585 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
101457533 TTAAATTCTA
101457543 AAAGATAAAT
1 AAAGATAAAT
*
101457553 ACAA-ATAATT
1 A-AAGATAAAT
*
101457563 AAAGATAATT
1 AAAGATAAAT
101457573 AAAGATAAAT
1 AAAGATAAAT
101457583 AAA
1 AAA
101457586 AATGAATCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:101458237 original size:43 final size:40
Alignment explanation
Indices: 101458189--101458278 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
101458179 AAGATGATCT
101458189 TTAGCGGCGTTTATAGGAAAAGCGCTGGTAAAGGTTATGTTCC
1 TTAGCGGCGTTTATAGGAAAAGCGC---TAAAGGTTATGTTCC
* * * * *
101458232 TTAGCGGCGTTTGTGGGGAAATCGCTAAAGGTTATGTTCT
1 TTAGCGGCGTTTATAGGAAAAGCGCTAAAGGTTATGTTCC
101458272 TTAGCGG
1 TTAGCGG
101458279 TGAAAAGGGT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
40 21 0.50
43 21 0.50
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.32
Consensus pattern (40 bp):
TTAGCGGCGTTTATAGGAAAAGCGCTAAAGGTTATGTTCC
Found at i:101458372 original size:35 final size:35
Alignment explanation
Indices: 101458323--101458389 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
101458313 TGTTTGTGGG
* *
101458323 AAAAGCGCCGCTAAAGGTCATGTTTTATAGAGCAT
1 AAAAGCGCCACTAAAGGTCATGTTCTATAGAGCAT
*
101458358 AAAAGCGCCACTAAAGGTTATGTTCTATAGAG
1 AAAAGCGCCACTAAAGGTCATGTTCTATAGAG
101458390 GCGTTTTATC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (35 bp):
AAAAGCGCCACTAAAGGTCATGTTCTATAGAGCAT
Found at i:101465203 original size:30 final size:30
Alignment explanation
Indices: 101465167--101465231 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
101465157 TAGTAAAAAG
* *
101465167 TAAAATTACACTTTAACCTTTTTAAAATAA
1 TAAAATTACAATTTAACCTTTTAAAAATAA
** * *
101465197 TAAAATTTTAATTTAATCTTTTAAAAATTA
1 TAAAATTACAATTTAACCTTTTAAAAATAA
101465227 TAAAA
1 TAAAA
101465232 ATATAAACTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (30 bp):
TAAAATTACAATTTAACCTTTTAAAAATAA
Found at i:101466005 original size:14 final size:16
Alignment explanation
Indices: 101465987--101466016 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101465977 TTGAATTGAA
101465987 TTTT-TAATATTTTAT
1 TTTTATAATATTTTAT
101466002 TTTTATAATATTTTA
1 TTTTATAATATTTTA
101466017 ATTATTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTATAATATTTTAT
Found at i:101466107 original size:18 final size:18
Alignment explanation
Indices: 101466078--101466112 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
101466068 ATTAAACCTG
101466078 AATTTTTTT-AAATTTTA
1 AATTTTTTTAAAATTTTA
101466095 AATTTTTTATAAAATTTT
1 AATTTTTT-TAAAATTTT
101466113 TAATAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
AATTTTTTTAAAATTTTA
Found at i:101473548 original size:17 final size:18
Alignment explanation
Indices: 101473519--101473777 Score: 108
Period size: 18 Copynumber: 14.1 Consensus size: 18
101473509 ACACAATAAT
101473519 AATTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
*
101473537 GATTTTTG-AAACACGAA
1 AATTTTTGAAAACACGAA
*
101473554 AATTTTTTGAAAACACGGA
1 AA-TTTTTGAAAACACGAA
* * *
101473573 ATTGTTTTGAAAACAAGGA
1 AAT-TTTTGAAAACACGAA
* *
101473592 AATTTTCT--ATACATGAGA
1 AATTTT-TGAAAACACGA-A
*
101473610 ATTTTTTG---ACACGAA
1 AATTTTTGAAAACACGAA
*
101473625 AAATTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
* *
101473643 AA-TTTCGAAAACATG--
1 AATTTTTGAAAACACGAA
** *
101473658 AATTTTTTTAAACATGAA
1 AATTTTTGAAAACACGAA
** *
101473676 TTTTTTTAAAAAAACACGAGA
1 AATTTTT--GAAAACACGA-A
*
101473697 ATTTTTTTTGAAAACACGAAA
1 A--ATTTTTGAAAACACG-AA
* *
101473718 ACATGAAAATTTTGAAAACGCGAC
1 A-AT-----TTTTGAAAACACGAA
101473742 AATTTTTG-AAACACG-A
1 AATTTTTGAAAACACGAA
*
101473758 ATTTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
101473776 AA
1 AA
101473778 CACGAAAAAA
Statistics
Matches: 183, Mismatches: 33, Indels: 50
0.69 0.12 0.19
Matches are distributed among these distances:
15 9 0.05
16 22 0.12
17 40 0.22
18 44 0.24
19 26 0.14
20 8 0.04
21 11 0.06
22 1 0.01
23 8 0.04
24 2 0.01
25 12 0.07
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:101473561 original size:19 final size:18
Alignment explanation
Indices: 101473503--101473647 Score: 88
Period size: 18 Copynumber: 8.0 Consensus size: 18
101473493 ACACGAGAAC
101473503 TTTGAAACAC-AATAATAATT
1 TTTGAAACACGAA-AAT--TT
*
101473523 TTTGAAAACACGAAGA-TT
1 TTTG-AAACACGAAAATTT
101473541 TTTGAAACACGAAAATTT
1 TTTGAAACACGAAAATTT
*
101473559 TTTGAAAACACG-GAATTGT
1 TTTG-AAACACGAAAATT-T
* *
101473578 TTTGAAAACAAGGAAATTT
1 TTTG-AAACACGAAAATTT
* * * *
101473597 TCT-ATACATGAGAATTT
1 TTTGAAACACGAAAATTT
*
101473614 TTTG--ACACGAAAA-AT
1 TTTGAAACACGAAAATTT
101473629 TTTGAAAACACGAAAATTT
1 TTTG-AAACACGAAAATTT
101473648 CGAAAACATG
Statistics
Matches: 99, Mismatches: 15, Indels: 23
0.72 0.11 0.17
Matches are distributed among these distances:
15 5 0.05
16 7 0.07
17 22 0.22
18 25 0.25
19 23 0.23
20 8 0.08
21 7 0.07
22 2 0.02
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.32
Consensus pattern (18 bp):
TTTGAAACACGAAAATTT
Found at i:101473679 original size:15 final size:16
Alignment explanation
Indices: 101473651--101473685 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
101473641 AAAATTTCGA
101473651 AAACATGAATTTTTTT
1 AAACATGAATTTTTTT
101473667 AAACATGAATTTTTTT
1 AAACATGAATTTTTTT
101473683 AAA
1 AAA
101473686 AAAACACGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (16 bp):
AAACATGAATTTTTTT
Found at i:101473767 original size:59 final size:61
Alignment explanation
Indices: 101473686--101473826 Score: 173
Period size: 59 Copynumber: 2.3 Consensus size: 61
101473676 TTTTTTTAAA
*
101473686 AAAACACGAGAATTTTTTTTGAAAACACGAAAACATG-AAAATTTTGAAA-ACGCGACAATTTTT
1 AAAACACGA-AA--TTTTTTGAAAACACGAAAACACGAAAAATTTTGAAACACG-G-CAATTTTT
101473749 G
61 G
* *
101473750 -AAACACG-AATTTTTTGAAAACACGAAAACACGAAAAAATTTTTAAACACGGGAATTTTTG
1 AAAACACGAAATTTTTTGAAAACACGAAAACACG-AAAAATTTTGAAACACGGCAATTTTTG
101473810 AAAACACGAAATTTTTT
1 AAAACACGAAATTTTTT
101473827 ATTCACGAGA
Statistics
Matches: 69, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
59 22 0.32
60 8 0.12
61 21 0.30
62 11 0.16
63 7 0.10
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (61 bp):
AAAACACGAAATTTTTTGAAAACACGAAAACACGAAAAATTTTGAAACACGGCAATTTTTG
Found at i:101473855 original size:16 final size:16
Alignment explanation
Indices: 101473716--101473858 Score: 82
Period size: 17 Copynumber: 8.9 Consensus size: 16
101473706 GAAAACACGA
* *
101473716 AAACATGAAAATTTTG
1 AAACACGAAATTTTTG
*
101473732 AAAACGCGACAATTTTTG
1 -AAACACGA-AATTTTTG
*
101473750 AAACACGAATTTTTTG
1 AAACACGAAATTTTTG
****
101473766 AAAACACGAAA-ACACG
1 -AAACACGAAATTTTTG
101473782 -AA-A--AAATTTTT-
1 AAACACGAAATTTTTG
*
101473793 AAACACGGGAATTTTTG
1 AAACAC-GAAATTTTTG
*
101473810 AAAACACGAAATTTTTT
1 -AAACACGAAATTTTTG
**
101473827 ATTCACGAGAATTTTTG
1 AAACACGA-AATTTTTG
101473844 AAACACGAAATTTTT
1 AAACACGAAATTTTT
101473859 TTTTTAAATA
Statistics
Matches: 93, Mismatches: 22, Indels: 23
0.67 0.16 0.17
Matches are distributed among these distances:
11 3 0.03
12 2 0.02
13 2 0.02
14 2 0.02
16 28 0.30
17 43 0.46
18 13 0.14
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (16 bp):
AAACACGAAATTTTTG
Found at i:101473859 original size:17 final size:17
Alignment explanation
Indices: 101473804--101473859 Score: 62
Period size: 16 Copynumber: 3.3 Consensus size: 17
101473794 AACACGGGAA
101473804 TTTTTGAAAACACGAAAT
1 TTTTTG-AAACACGAAAT
**
101473822 TTTTT-ATTCACGAGAA-
1 TTTTTGAAACACGA-AAT
101473838 TTTTTGAAACACGAAAT
1 TTTTTGAAACACGAAAT
101473855 TTTTT
1 TTTTT
101473860 TTTTAAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
16 13 0.42
17 13 0.42
18 5 0.16
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (17 bp):
TTTTTGAAACACGAAAT
Found at i:101473860 original size:34 final size:34
Alignment explanation
Indices: 101473773--101473859 Score: 113
Period size: 34 Copynumber: 2.5 Consensus size: 34
101473763 TTGAAAACAC
* ** *
101473773 GAAAACACGAAAAAATTTTTAAACACGGGAATTTTT
1 GAAAACACG--AAATTTTTTATTCACGAGAATTTTT
101473809 GAAAACACGAAATTTTTTATTCACGAGAATTTTT
1 GAAAACACGAAATTTTTTATTCACGAGAATTTTT
101473843 G-AAACACGAAATTTTTT
1 GAAAACACGAAATTTTTT
101473860 TTTTAAATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
33 16 0.34
34 22 0.47
36 9 0.19
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (34 bp):
GAAAACACGAAATTTTTTATTCACGAGAATTTTT
Found at i:101473958 original size:18 final size:17
Alignment explanation
Indices: 101473917--101473965 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
101473907 TATTATCATT
101473917 ATTTTGAAACACGAGAA
1 ATTTTGAAACACGAGAA
*
101473934 ATTTTGAAGACATGA-AA
1 ATTTTGAA-ACACGAGAA
101473951 ATTTTTGAAACACGA
1 A-TTTTGAAACACGA
101473966 TTTTTCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 16 0.57
18 12 0.43
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (17 bp):
ATTTTGAAACACGAGAA
Found at i:101474112 original size:20 final size:20
Alignment explanation
Indices: 101474083--101474120 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
101474073 GAGATTCTAA
101474083 TAAAAAACGAGAATTTTTAT
1 TAAAAAACGAGAATTTTTAT
* *
101474103 TAAAATACGAGGATTTTT
1 TAAAAAACGAGAATTTTT
101474121 GAATATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.13, T:0.37
Consensus pattern (20 bp):
TAAAAAACGAGAATTTTTAT
Found at i:101474248 original size:3 final size:3
Alignment explanation
Indices: 101474240--101474264 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
101474230 TACATTAAAA
101474240 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
101474265 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:101474659 original size:10 final size:10
Alignment explanation
Indices: 101474644--101474675 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
101474634 TTTTATTTTC
101474644 CTTTTTCTTT
1 CTTTTTCTTT
101474654 CTTTTTCTTT
1 CTTTTTCTTT
101474664 CTTTTTCTTT
1 CTTTTTCTTT
101474674 CT
1 CT
101474676 CCCTTCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (10 bp):
CTTTTTCTTT
Found at i:101474669 original size:27 final size:27
Alignment explanation
Indices: 101474639--101474708 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
101474629 ACCTTTTTTA
* *
101474639 TTTTCCTTTTTCTTTCTTTTTCTT-TC
1 TTTTCCTTTTTCTTTCTTCTTCTTCCC
* * *
101474665 TTTTTCTTTCTCCCTTCTTCTTCTTCCC
1 TTTTCCTTT-TTCTTTCTTCTTCTTCCC
*
101474693 TTTTCTTTTTTCTTTC
1 TTTTCCTTTTTCTTTC
101474709 CTTTGAACCC
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
26 8 0.24
27 17 0.52
28 8 0.24
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (27 bp):
TTTTCCTTTTTCTTTCTTCTTCTTCCC
Found at i:101474686 original size:20 final size:20
Alignment explanation
Indices: 101474644--101474683 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
101474634 TTTTATTTTC
**
101474644 CTTTTTCTTTCTTTTTCTTT
1 CTTTTTCTTTCTCCTTCTTT
101474664 CTTTTTCTTTCTCCCTTCTT
1 CTTTTTCTTTCT-CCTTCTT
101474684 CTTCTTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (20 bp):
CTTTTTCTTTCTCCTTCTTT
Found at i:101478885 original size:22 final size:20
Alignment explanation
Indices: 101478860--101478899 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
101478850 AGTTGTCAAC
101478860 ATTTATATCTTTTTTCAATTTG
1 ATTTATAT-TTTTTT-AATTTG
*
101478882 ATTTGTATTTTTTTAATT
1 ATTTATATTTTTTTAATT
101478900 AAATTTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 6 0.35
22 7 0.41
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (20 bp):
ATTTATATTTTTTTAATTTG
Found at i:101480658 original size:15 final size:15
Alignment explanation
Indices: 101480640--101480674 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
101480630 ATCGAGATGA
101480640 ATTGATTTCCATCTT
1 ATTGATTTCCATCTT
101480655 ATTGATTTCCATCTT
1 ATTGATTTCCATCTT
101480670 ATTGA
1 ATTGA
101480675 ATCGAATCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.23, C:0.17, G:0.09, T:0.51
Consensus pattern (15 bp):
ATTGATTTCCATCTT
Found at i:101481708 original size:12 final size:12
Alignment explanation
Indices: 101481691--101481721 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
101481681 GAAATGGAGA
101481691 ATCATCATCACC
1 ATCATCATCACC
*
101481703 ATCATCATCAGC
1 ATCATCATCACC
101481715 ATCATCA
1 ATCATCA
101481722 ATATGGTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.35, G:0.03, T:0.26
Consensus pattern (12 bp):
ATCATCATCACC
Found at i:101489686 original size:22 final size:24
Alignment explanation
Indices: 101489636--101489687 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 24
101489626 TTGCAATGCT
101489636 TTTATATTTTAATAATTGAGTATTA
1 TTTATATTTTAAT-ATTGAGTATTA
101489661 -TTATATATTTAAT-TTGA-T-TTA
1 TTTATAT-TTTAATATTGAGTATTA
101489682 TTTATA
1 TTTATA
101489688 AATAAATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
21 3 0.12
22 6 0.24
23 4 0.16
24 6 0.24
25 6 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (24 bp):
TTTATATTTTAATATTGAGTATTA
Found at i:101489877 original size:19 final size:19
Alignment explanation
Indices: 101489853--101489891 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
101489843 AATATTTTCC
*
101489853 AGTAAATCATTTTACAGAA
1 AGTAAAACATTTTACAGAA
*
101489872 AGTAAAACATTTTCCAGAA
1 AGTAAAACATTTTACAGAA
101489891 A
1 A
101489892 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (19 bp):
AGTAAAACATTTTACAGAA
Found at i:101489897 original size:33 final size:34
Alignment explanation
Indices: 101489841--101489905 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
101489831 CAAACACGAG
*
101489841 AAAATATTTTCCAGTAAATCATTTTACAGAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAGT
*
101489875 AAAACATTTTCCAG-AAATCATTTTACGGAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAA
101489906 ACATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 16 0.55
34 13 0.45
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAGT
Found at i:101495706 original size:171 final size:170
Alignment explanation
Indices: 101495403--101495790 Score: 573
Period size: 171 Copynumber: 2.3 Consensus size: 170
101495393 TCAATTGATT
* *
101495403 TAAATTCTAAATTCATTCCTAAATTAAGTTAATTAAACAGTAATTAAAGAAGGTTTCTCGTTAGT
1 TAAATTATAAATTCATTACTAAATTAA-TTAATTAAACAGTAATTAAAGAAGGTTTCTCGTTAGT
* * *
101495468 AAAAACCTTCAACTCAGATTGATCTAGTTTCAGTGATGTGATCATTGCATAGATTAACGAAACTA
65 AAAAACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACTA
* * *
101495533 AATCAGATCTAAAAATCAGTGATGTGAATAG-GCCATGAAGC
130 AATCAAATATAAAAATCAGTGATGTGAATAGTG-CATAAAGC
* *
101495574 TAAATTATAAAGTCATTACTAAATTAATCTAATTAAACTGTAATTAAAGAAGGTTTCTCGTCT-G
1 TAAATTATAAATTCATTACTAAATTAAT-TAATTAAACAGTAATTAAAGAAGGTTTCTCGT-TAG
*
101495638 TAAAAACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATTATTGCATAGATTAACGAAACT
64 TAAAAACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACT
*
101495703 AAATCAAATATAAAAATCAGTGATGTGATTAGTGCATAAAGC
129 AAATCAAATATAAAAATCAGTGATGTGAATAGTGCATAAAGC
* * * *
101495745 TAAATTATAAATTCATTGCTCAATTAATTTAATCAAACAGTTATTA
1 TAAATTATAAATTCATTACTAAATTAA-TTAATTAAACAGTAATTA
101495791 GCAAACTTTG
Statistics
Matches: 195, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
170 1 0.01
171 191 0.98
172 3 0.02
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (170 bp):
TAAATTATAAATTCATTACTAAATTAATTAATTAAACAGTAATTAAAGAAGGTTTCTCGTTAGTA
AAAACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACTAA
ATCAAATATAAAAATCAGTGATGTGAATAGTGCATAAAGC
Found at i:101498690 original size:3 final size:3
Alignment explanation
Indices: 101498676--101498729 Score: 60
Period size: 3 Copynumber: 18.3 Consensus size: 3
101498666 GACAATAAAA
*
101498676 AAT AAT AGT AAT AAT AAT AAT -AT AGAT AAT AAT -AT ATAT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A-AT AAT AAT
101498720 AAT AAT AAT A
1 AAT AAT AAT A
101498730 GTTAGAGATA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
2 6 0.14
3 32 0.73
4 6 0.14
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:101498942 original size:3 final size:3
Alignment explanation
Indices: 101498934--101498987 Score: 65
Period size: 3 Copynumber: 18.3 Consensus size: 3
101498924 TATAAATATG
* * * *
101498934 ATA ATA ATA ATA ATA ATG ATA ATG ATA ATA ATA ATA AT- ATA GTA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
101498981 ATA ATA A
1 ATA ATA A
101498988 AAGTAAAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:101499395 original size:17 final size:17
Alignment explanation
Indices: 101499338--101499399 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
101499328 AATACAATAT
101499338 TAAAATATATATACGAGTAA
1 TAAAA-ATATATAC-A-TAA
* * * *
101499358 TAAAAATGTATCCGTAT
1 TAAAAATATATACATAA
101499375 TAAAAATATATACATAA
1 TAAAAATATATACATAA
101499392 TAAAAATA
1 TAAAAATA
101499400 CAATATTTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
17 23 0.68
19 6 0.18
20 5 0.15
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (17 bp):
TAAAAATATATACATAA
Found at i:101499562 original size:23 final size:23
Alignment explanation
Indices: 101499526--101499570 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
101499516 GTACATAACA
101499526 TAAATATCATACATATA-ATATC
1 TAAATATCATACATATATATATC
101499548 TAAATATACATACATATATATAT
1 TAAATAT-CATACATATATATAT
101499571 AGTATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.33
23 10 0.48
24 4 0.19
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (23 bp):
TAAATATCATACATATATATATC
Found at i:101500335 original size:18 final size:18
Alignment explanation
Indices: 101500314--101500354 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
101500304 TCGAAAATAA
101500314 AATAAAAAGGAAA-AAAAT
1 AATAAAAA-GAAAGAAAAT
*
101500332 AATAAATAGAAAGAAAAT
1 AATAAAAAGAAAGAAAAT
101500350 AATAA
1 AATAA
101500355 TAATGTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (18 bp):
AATAAAAAGAAAGAAAAT
Found at i:101500353 original size:21 final size:22
Alignment explanation
Indices: 101500313--101500357 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
101500303 TTCGAAAATA
101500313 AAATAAAAAGGAAAAAAATAAT
1 AAATAAAAAGGAAAAAAATAAT
* *
101500335 AAATAGAAA-GAAAATAATAAT
1 AAATAAAAAGGAAAAAAATAAT
101500356 AA
1 AA
101500358 TGTAATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (22 bp):
AAATAAAAAGGAAAAAAATAAT
Found at i:101501987 original size:18 final size:17
Alignment explanation
Indices: 101501966--101501999 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
101501956 TTCCAAAAAT
101501966 TATAATAATATAAATTAA
1 TATAATAATA-AAATTAA
101501984 TATAATAATAAAATTA
1 TATAATAATAAAATTA
101502000 TATTTTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TATAATAATAAAATTAA
Found at i:101502024 original size:83 final size:83
Alignment explanation
Indices: 101501857--101502011 Score: 197
Period size: 83 Copynumber: 1.8 Consensus size: 83
101501847 AAAATGGAAC
* * ** *
101501857 AATTTTGTTTTAATCCCTTCAAAATTTATAAAATTATAAATTAATACGTTATAAAATTATAGTTT
1 AATTTTGATTTAATCCCTTCAAAAATTATAAAATTATAAATTAATAAATAATAAAATTATAGTTT
*
101501922 AGTCTAAAAAAATGATAA
66 ACTCTAAAAAAATGATAA
*
101501940 AATTTTGATTTAAT-CCTTCCAAAAATTATAATAA-TATAAATTAATATAATAATAAAATTATAT
1 AATTTTGATTTAATCCCTT-CAAAAATTATAA-AATTATAAATTAATA-AATAATAAAATTATAG
101502003 TTTAACTCT
63 TTT-ACTCT
101502012 CATCAATATA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
82 4 0.07
83 36 0.59
84 17 0.28
85 4 0.07
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (83 bp):
AATTTTGATTTAATCCCTTCAAAAATTATAAAATTATAAATTAATAAATAATAAAATTATAGTTT
ACTCTAAAAAAATGATAA
Found at i:101505241 original size:26 final size:26
Alignment explanation
Indices: 101505203--101505255 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
101505193 CAATCTCACT
*
101505203 TGGTGTCATCTTTGCTCGAACCCATA
1 TGGTGTCAGCTTTGCTCGAACCCATA
101505229 TGGTGTCAGCTTTGCTCGAACCCATA
1 TGGTGTCAGCTTTGCTCGAACCCATA
101505255 T
1 T
101505256 CTTCCTTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (26 bp):
TGGTGTCAGCTTTGCTCGAACCCATA
Found at i:101505594 original size:21 final size:21
Alignment explanation
Indices: 101505570--101505609 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
101505560 ACATTTTCTA
101505570 AAGTT-AAAAGTCAAAACCATT
1 AAGTTAAAAAG-CAAAACCATT
101505591 AAGTTAAAAAGCAAAACCA
1 AAGTTAAAAAGCAAAACCA
101505610 CATCGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.57, C:0.15, G:0.10, T:0.17
Consensus pattern (21 bp):
AAGTTAAAAAGCAAAACCATT
Found at i:101510858 original size:16 final size:16
Alignment explanation
Indices: 101510826--101510866 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
101510816 ATACGTATTA
**
101510826 TATATATATATTTATT
1 TATATATATATAAATT
101510842 TATATATATATAAATT
1 TATATATATATAAATT
101510858 T-TA-ATATAT
1 TATATATATAT
101510867 CAATAAGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 6 0.26
15 2 0.09
16 15 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATATATATATAAATT
Found at i:101512498 original size:12 final size:12
Alignment explanation
Indices: 101512477--101512510 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
101512467 AATAATTTCA
*
101512477 GCATATATGCAT
1 GCATACATGCAT
*
101512489 GCATGCATGCAT
1 GCATACATGCAT
101512501 GCATACATGC
1 GCATACATGC
101512511 GTAGACATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (12 bp):
GCATACATGCAT
Found at i:101517687 original size:131 final size:131
Alignment explanation
Indices: 101517560--101517867 Score: 336
Period size: 130 Copynumber: 2.4 Consensus size: 131
101517550 GAGAAATCAT
* * * * * ** *
101517560 AACCCAGCACGATAGGGCATGATTCC-CGAATCGT-CAAACACCGAGTATTGCCTTCGTTTTAAA
1 AACCCAACACGTTAGGGCACGATTCCGCGAATCGTCCAAACACCAAATATCACCTTC-ATTTAAA
* * * * * *
101517623 GGATTTTTAGAAGAGCCGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACAAATGCGAAAT
65 GGA-TTTTAAAAGAGACGAATGAAATTTCGAAGGGAAATTCGATTATTTTAAACAAATGCGAAAT
*
101517688 TGC
129 TAC
* * * * *
101517691 AACCCAACACGTTAGGGCACGATTCCGCGAAT-TTCCAAACATCAAATCTCATCTTCATTTAAGG
1 AACCCAACACGTTAGGGCACGATTCCGCGAATCGTCCAAACACCAAATATCACCTTCATTTAAAG
* * * *
101517755 GATTTTAAAAGATATGAATGAAATTTCGAAGGGAAATTCGATTATTTTGAGCAAATGCGAAATTA
66 GATTTTAAAAGAGACGAATGAAATTTCGAAGGGAAATTCGATTATTTTAAACAAATGCGAAATTA
101517820 C
131 C
* *
101517821 AACCCAACACGTTAGGGCACGATTCCGCGAATCG-CCGAACATCAAAT
1 AACCCAACACGTTAGGGCACGATTCCGCGAATCGTCCAAACACCAAAT
101517868 TTCGTCTTTG
Statistics
Matches: 148, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
130 97 0.66
131 32 0.22
132 19 0.13
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (131 bp):
AACCCAACACGTTAGGGCACGATTCCGCGAATCGTCCAAACACCAAATATCACCTTCATTTAAAG
GATTTTAAAAGAGACGAATGAAATTTCGAAGGGAAATTCGATTATTTTAAACAAATGCGAAATTA
C
Found at i:101518410 original size:16 final size:17
Alignment explanation
Indices: 101518389--101518420 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
101518379 AAGTTAACAG
101518389 AATATATGATA-ATAAA
1 AATATATGATACATAAA
101518405 AATATATGATACATAA
1 AATATATGATACATAA
101518421 CAAAACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (17 bp):
AATATATGATACATAAA
Found at i:101522689 original size:3 final size:3
Alignment explanation
Indices: 101522681--101522720 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
101522671 CAACCTATTC
*
101522681 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
101522721 AAAACAATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:101523926 original size:33 final size:33
Alignment explanation
Indices: 101523884--101523949 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
101523874 ATTTCTAGGG
101523884 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
1 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
101523917 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
1 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
101523950 GAATGAGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.30, G:0.06, T:0.27
Consensus pattern (33 bp):
ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
Found at i:101526995 original size:16 final size:16
Alignment explanation
Indices: 101526976--101527006 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101526966 CATTATATCA
101526976 TAAAAATAACTATTTT
1 TAAAAATAACTATTTT
*
101526992 TAAAAATAATTATTT
1 TAAAAATAACTATTT
101527007 AAAAGCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TAAAAATAACTATTTT
Done.