Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 313 of 316
Found at i:102754224 original size:45 final size:45
Alignment explanation
Indices: 102754169--102754329 Score: 150
Period size: 45 Copynumber: 3.5 Consensus size: 45
102754159 AACCGTTAAC
102754169 ATTCTATCGATTTAATCTTAAATTCTATAAACCTTAACTGTTTAT
1 ATTCTATCGATTTAATCTTAAATTCTATAAACCTTAACTGTTTAT
* * * *
102754214 ATTTTATCGATTTAAT-TTTAATTCTGTTAAA--ATAA-TGTTGATTCATCT
1 ATTCTATCGATTTAATCTTAAATTCT-ATAAACCTTAACTG-T--TT-A--T
* * * *
102754262 ATTCTATCAATTTAATCTTAAATTTTATAGACCTTAACTGTTTAC
1 ATTCTATCGATTTAATCTTAAATTCTATAAACCTTAACTGTTTAT
*
102754307 ATTCTATCGATTTAATCATAAAT
1 ATTCTATCGATTTAATCTTAAAT
102754330 CCATTAATAA
Statistics
Matches: 91, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 8 0.09
45 42 0.46
46 1 0.01
47 1 0.01
48 20 0.22
49 7 0.08
50 4 0.04
51 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.06, T:0.48
Consensus pattern (45 bp):
ATTCTATCGATTTAATCTTAAATTCTATAAACCTTAACTGTTTAT
Found at i:102758724 original size:59 final size:59
Alignment explanation
Indices: 102758620--102758737 Score: 191
Period size: 59 Copynumber: 2.0 Consensus size: 59
102758610 GCATGGAGCG
* * *
102758620 GCAAGAAACTCGTTGTTGATCATTTTAAGATGTTTTGATGCATTGCATATGCACATATA
1 GCAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATA
* *
102758679 GCAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGTATTGCATATGCACTTATA
1 GCAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATA
102758738 TCTAATGAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.37
Consensus pattern (59 bp):
GCAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATA
Found at i:102764561 original size:122 final size:122
Alignment explanation
Indices: 102764344--102764589 Score: 411
Period size: 122 Copynumber: 2.0 Consensus size: 122
102764334 CTCGAATATT
* *
102764344 TTTTCCTTCGAAACCCTTGGATAACTTTAAATCAATCAAACAAAAAGACAAGATAGTTTATAGCA
1 TTTTCCTTCGAAACCCTTGGATAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
* *
102764409 TGAAAGAAAGCTATTCTAAGCTATTCATTCTTCATATAACCCAAAATTCTAACTAGG
66 TGAAAAAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAATTCTAACTAGG
* * *
102764466 TTTTCCTTTGAAACCCTTGGATAATTTTAAATCAACCAAACAAAAAGACAGGATAGCTTATAGCA
1 TTTTCCTTCGAAACCCTTGGATAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
* *
102764531 TGAAAAAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAGTTCTGACTAGG
66 TGAAAAAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAATTCTAACTAGG
102764588 TT
1 TT
102764590 CAAAATGATA
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 115 1.00
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (122 bp):
TTTTCCTTCGAAACCCTTGGATAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
TGAAAAAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAATTCTAACTAGG
Found at i:102766357 original size:21 final size:20
Alignment explanation
Indices: 102766306--102766357 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
102766296 AAATCTAAAT
* *
102766306 TAAAATACTAAAATTCAGGA
1 TAAAATACTGAAATTCAGAA
* *
102766326 TAAAATCCTGAAATTCCGAA
1 TAAAATACTGAAATTCAGAA
102766346 TAAAAATACTGA
1 T-AAAATACTGA
102766358 TGTTGGCATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.25
Consensus pattern (20 bp):
TAAAATACTGAAATTCAGAA
Found at i:102775542 original size:14 final size:14
Alignment explanation
Indices: 102775523--102775565 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
102775513 CTACAATTTA
*
102775523 ACTATTATGTTGTT
1 ACTATTTTGTTGTT
*
102775537 ACTATTTTCTTGTT
1 ACTATTTTGTTGTT
*
102775551 ATTATTTTGTTGTT
1 ACTATTTTGTTGTT
102775565 A
1 A
102775566 ATCTTGTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.19, C:0.07, G:0.12, T:0.63
Consensus pattern (14 bp):
ACTATTTTGTTGTT
Found at i:102779103 original size:29 final size:30
Alignment explanation
Indices: 102779031--102779103 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
102779021 CTTTTAAAAC
*
102779031 TTTTAAAAATTTTAATTAGATCTCTCAGTT
1 TTTTAAAAATTTTAATTAGATCTCTCAGTA
*
102779061 TTTTAAAAATTTTAATTAGA-CTCTTA-TA
1 TTTTAAAAATTTTAATTAGATCTCTCAGTA
*
102779089 TTTTGAAAATCTTTA
1 TTTTAAAAAT-TTTA
102779104 TTAAACCCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 10 0.26
29 9 0.23
30 20 0.51
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (30 bp):
TTTTAAAAATTTTAATTAGATCTCTCAGTA
Found at i:102779125 original size:30 final size:29
Alignment explanation
Indices: 102779089--102779146 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
102779079 GACTCTTATA
102779089 TTTTGAAAATCTTTA-TTAAACCCCTAAAAG
1 TTTTGAAAAT-TTTAGTTAAACCCC-AAAAG
*
102779119 TTTTGAAAATTTTAGTTAATCCCCAAAA
1 TTTTGAAAATTTTAGTTAAACCCCAAAA
102779147 TTAGTGGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (29 bp):
TTTTGAAAATTTTAGTTAAACCCCAAAAG
Found at i:102779274 original size:23 final size:23
Alignment explanation
Indices: 102779244--102779290 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
102779234 ATATATCATA
102779244 AACTTCAATTAATGTAGAAAACT
1 AACTTCAATTAATGTAGAAAACT
102779267 AACTTCAATTAATGTAGAAAACT
1 AACTTCAATTAATGTAGAAAACT
102779290 A
1 A
102779291 CTTTTAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.30
Consensus pattern (23 bp):
AACTTCAATTAATGTAGAAAACT
Found at i:102779297 original size:19 final size:21
Alignment explanation
Indices: 102779251--102779297 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
102779241 ATAAACTTCA
102779251 ATTAATGTAGAAAACTAACTT
1 ATTAATGTAGAAAACTAACTT
102779272 CAATTAATGTAGAAAACT-ACTT
1 --ATTAATGTAGAAAACTAACTT
102779294 -TTAA
1 ATTAA
102779298 CTTTATATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.17
22 4 0.17
23 16 0.67
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.34
Consensus pattern (21 bp):
ATTAATGTAGAAAACTAACTT
Found at i:102780947 original size:42 final size:42
Alignment explanation
Indices: 102780900--102781053 Score: 254
Period size: 42 Copynumber: 3.7 Consensus size: 42
102780890 TCGTTTTCTC
** * *
102780900 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
102780942 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
* *
102780984 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
102781026 GATGCCATAGCCCAGCTATGGTCTTACA
1 GATGCCATAGCCCAGCTATGGTCTTACA
102781054 TGAATCACAT
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 106 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
Found at i:102781092 original size:46 final size:47
Alignment explanation
Indices: 102781025--102781140 Score: 146
Period size: 47 Copynumber: 2.5 Consensus size: 47
102781015 ATTCATATAT
* * * *
102781025 TGATGCCATAGCCCAGCTATGGT-CT-TACATGAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCCTATACA-GAAGCACATATCACAC
* *
102781071 TGATGCCATATCCCAGATATGGTCCTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCCTATACAGAAGCACATATCACAC
*
102781118 CGATGCCATATCCCAGATATGGT
1 TGATGCCATATCCCAGATATGGT
102781141 ATTATACGGA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
46 21 0.34
47 36 0.59
48 4 0.07
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCCTATACAGAAGCACATATCACAC
Found at i:102781216 original size:31 final size:31
Alignment explanation
Indices: 102781181--102781290 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
102781171 TTGTAACCGA
*
102781181 AGCTACCACTATTCACTGATCAGGTAGCCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
* *
102781212 AGCTACCATTTTTCACTGATCAGGTAGCCAG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
*
102781243 AGCTACCACTTTTCACTGATTAGGTAGCCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
*
102781274 AACTACCACTTTTCACT
1 AGCTACCACTTTTCACT
102781291 TTTCACTGAT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTAGCCGG
Found at i:102781259 original size:62 final size:64
Alignment explanation
Indices: 102781179--102781328 Score: 198
Period size: 62 Copynumber: 2.3 Consensus size: 64
102781169 ACTTGTAACC
* *
102781179 GAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCA-T-TTTTCACTGATCAGGTAGCCA
1 GAAGCTACCACTTTTCACTGATCAGGTAGCCGGAACTACCATTCTTTTCACTGATCAGGTAG-CA
*
102781242 G-AGCTACCACTTTTCACTGATTAGGTAGCCGGAACTACCACTTTTCACTTTTCACTGATCAGGT
1 GAAGCTACCACTTTTCACTGATCAGGTAGCCGGAACTACCA---TT--CTTTTCACTGATCAGGT
102781306 AGCA
61 AGCA
102781310 GAAGCTACCACTTTTCACT
1 GAAGCTACCACTTTTCACT
102781329 TGTCATTTGT
Statistics
Matches: 76, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
62 36 0.47
63 1 0.01
66 1 0.01
68 3 0.04
69 35 0.46
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (64 bp):
GAAGCTACCACTTTTCACTGATCAGGTAGCCGGAACTACCATTCTTTTCACTGATCAGGTAGCA
Found at i:102781300 original size:38 final size:38
Alignment explanation
Indices: 102781249--102781329 Score: 128
Period size: 38 Copynumber: 2.1 Consensus size: 38
102781239 CCAGAGCTAC
* *
102781249 CACTTTTCACTGATTAGGTAGCCGGAA-CTACCACTTTT
1 CACTTTTCACTGATCAGGTAG-CAGAAGCTACCACTTTT
102781287 CACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTT
1 CACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTT
102781325 CACTT
1 CACTT
102781330 GTCATTTGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
37 4 0.10
38 36 0.90
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (38 bp):
CACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTT
Found at i:102781410 original size:50 final size:50
Alignment explanation
Indices: 102781304--102781530 Score: 357
Period size: 50 Copynumber: 4.5 Consensus size: 50
102781294 CACTGATCAG
* * * *
102781304 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
102781355 GTAGCCTAAGCTATCACTTATCACTTTCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCA-TTTGTCCTTGATCAGATAAGT
*
102781405 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
102781455 GAAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
102781505 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
102781531 GTTGCCATGG
Statistics
Matches: 164, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
49 3 0.02
50 136 0.83
51 25 0.15
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:102785480 original size:42 final size:42
Alignment explanation
Indices: 102785433--102785517 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
102785423 ATAAAACTAT
102785433 AACACCCCTTACCCGAGCAAAGGATGCCACATTTTCGAGTCA
1 AACACCCCTTACCCGAGCAAAGGATGCCACATTTTCGAGTCA
102785475 AACACCCCTTACCCGAGCAAAGGATGCCACATTTTCGAGTCA
1 AACACCCCTTACCCGAGCAAAGGATGCCACATTTTCGAGTCA
102785517 A
1 A
102785518 TCACTTCACC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.32, C:0.33, G:0.16, T:0.19
Consensus pattern (42 bp):
AACACCCCTTACCCGAGCAAAGGATGCCACATTTTCGAGTCA
Found at i:102785513 original size:22 final size:22
Alignment explanation
Indices: 102785446--102785513 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
102785436 ACCCCTTACC
102785446 CGAGCAAAGGATGCCACATTTT
1 CGAGCAAAGGATGCCACATTTT
* * **
102785468 CGAGTCAAA-CA--CC-CCTTACC
1 CGAG-CAAAGGATGCCACATT-TT
102785488 CGAGCAAAGGATGCCACATTTT
1 CGAGCAAAGGATGCCACATTTT
102785510 CGAG
1 CGAG
102785514 TCAATCACTT
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
19 7 0.22
20 7 0.22
22 11 0.34
23 7 0.22
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (22 bp):
CGAGCAAAGGATGCCACATTTT
Found at i:102787284 original size:168 final size:168
Alignment explanation
Indices: 102787044--102787374 Score: 511
Period size: 168 Copynumber: 2.0 Consensus size: 168
102787034 CCCTCGCAGA
* * * * *
102787044 TTGTTTTTGGGTCATTTTCTGACATGCCAGCTGACGTATTCTATGATTCAACATTCGACGAAGCA
1 TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
* * * * *
102787109 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCGTCCACCTGCACCTTCAGCCCCGGCAGGGGC-TT
66 ACACCTTCCAAGGTGGCCCATGTCTCACCTCCTCCACCTGCACCTCCAGCACCGGCAGGGGCATT
102787173 CTGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGT
131 -TGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGT
* * * *
102787212 TTGTTTTTGGGTCGTTTGGTGACATGTCAGGTCACGTATTCTATCATTCAACATTCAACCAAGCA
1 TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
*
102787277 ACACCTTCCAAGGTGGCCCATGTCTCACCTCCTCCACTTGCACCTCCAGCACCGGCAGGGGCATT
66 ACACCTTCCAAGGTGGCCCATGTCTCACCTCCTCCACCTGCACCTCCAGCACCGGCAGGGGCATT
102787342 TGAAAATGTGGCCAAAGATGATGAGAAACCAAA
131 TGAAAATGTGGCCAAAGATGATGAGAAACCAAA
102787375 AAATGCTAAA
Statistics
Matches: 147, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
168 145 0.99
169 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (168 bp):
TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
ACACCTTCCAAGGTGGCCCATGTCTCACCTCCTCCACCTGCACCTCCAGCACCGGCAGGGGCATT
TGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGT
Found at i:102788113 original size:27 final size:28
Alignment explanation
Indices: 102788045--102788113 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
102788035 TGATAAAATA
*
102788045 ATTTCAATTTTATAAATACAAAAATTGT
1 ATTTCAATTTTAAAAATACAAAAATTGT
* * *
102788073 ATATCAATAGTTAAATAATA-AAATATT-T
1 ATTTCAAT-TTTAAA-AATACAAAAATTGT
102788101 ATTTCAATTTTAA
1 ATTTCAATTTTAA
102788114 TCAGTGTGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
27 4 0.12
28 15 0.45
29 10 0.30
30 4 0.12
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (28 bp):
ATTTCAATTTTAAAAATACAAAAATTGT
Found at i:102795996 original size:3 final size:3
Alignment explanation
Indices: 102795988--102796042 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
102795978 ATTCAGTCAT
102795988 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
102796036 TAA TAA T
1 TAA TAA T
102796043 CTAAAAGTCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:102800049 original size:106 final size:103
Alignment explanation
Indices: 102799907--102800196 Score: 341
Period size: 106 Copynumber: 2.7 Consensus size: 103
102799897 ATAAAAACCA
* * * *
102799907 GACTGGATCTTCCTTTTTTTGTTGATTTTTTTAAGTTTAAAATTAATAGTTTATCCTTGAATTTA
1 GACTGGATCTTCTTTTTTTTGTTGA--TTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATTTA
*
102799972 ATCGTATTTTTAAATATATTTGTGGAATTTCTAAGAAATAC-
64 ATCGTATTTCT-AATATATTTGTGGAATTTCTAAGAAAT-CG
* * * *
102800013 GACTGGATCGTCTTTTCTTTTGTTGATCTTTCAAGTTTTGAATTAATAGTTTATTCTTGAATTAA
1 GACTGGATCTTCTTTT-TTTTGTTGAT-TTTAAAGTTTTAAATTAATAGTTTATTCTTGAATT-T
* * * *
102800078 AAT-GTATTTCTAATATTTTTGTGTAATTTCTTAGCAATCG
63 AATCGTATTTCTAATATATTTGTGGAATTTCTAAGAAATCG
*
102800118 GACTGGATCCTTACTTTTTTCTGTTGTGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATT
1 GACTGGAT-CTT-CTTTTTTTTG-T-TGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATT
102800183 TAATCGTATTTCTA
62 TAATCGTATTTCTA
102800197 GTATTTTTTT
Statistics
Matches: 158, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
104 1 0.01
105 32 0.20
106 61 0.39
107 60 0.38
108 4 0.03
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51
Consensus pattern (103 bp):
GACTGGATCTTCTTTTTTTTGTTGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATTTAAT
CGTATTTCTAATATATTTGTGGAATTTCTAAGAAATCG
Found at i:102800174 original size:107 final size:106
Alignment explanation
Indices: 102799907--102800204 Score: 340
Period size: 107 Copynumber: 2.8 Consensus size: 106
102799897 ATAAAAACCA
* * * *
102799907 GACTGGATCTTCCTTTTTT-TGTTGAT-TTTTTTAAGTTTAAAATTAATAGTTTATCCTTGAATT
1 GACTGGATCTT-CTTTTTTCTGTTGATGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATT
* *
102799970 TAATCGTATTTTTAAATATATTTGTGGAATTTCTAAGAAATAC
65 TAATCGTATTTCT-AATATTTTTGTGGAATTTCTAAGAAATAC
* * * * *
102800013 GACTGGATCGTCTTTTCTTTTGTTGAT--CTTTCAAGTTTTGAATTAATAGTTTATTCTTGAATT
1 GACTGGATCTTCTTTT-TTCTGTTGATGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATT
* * * *
102800076 AAAAT-GTATTTCTAATATTTTTGTGTAATTTCTTAGCAAT-C
65 -TAATCGTATTTCTAATATTTTTGTGGAATTTCTAAGAAATAC
102800117 GGACTGGATCCTTACTTTTTTCTGTTG-TGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAA
1 -GACTGGAT-CTT-CTTTTTTCTGTTGATGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAA
*
102800181 TTTAATCGTATTTCTAGTATTTTT
63 TTTAATCGTATTTCTAATATTTTT
102800205 TTAGCAATCA
Statistics
Matches: 164, Mismatches: 19, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
104 1 0.01
105 37 0.23
106 62 0.38
107 64 0.39
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.51
Consensus pattern (106 bp):
GACTGGATCTTCTTTTTTCTGTTGATGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATTT
AATCGTATTTCTAATATTTTTGTGGAATTTCTAAGAAATAC
Found at i:102803410 original size:106 final size:105
Alignment explanation
Indices: 102803300--102803500 Score: 251
Period size: 106 Copynumber: 1.9 Consensus size: 105
102803290 TCAGCTGCCT
* * * **
102803300 TTTTTTTTTAAAAAAAAGTTTAAAATTAATAGTTTATCCTTGAA-TTAGATTGTATTTCTGATAT
1 TTTTTGTTGAAAAAAAAGTTTAAAATTAATAGTTTAACCTTGAATTTA-ATCCTATTTCTGAT-T
*
102803364 TTTTGTGTAATTTCTTAGCAATCCGACTGGATCGTCTTTTTC
64 TTTAGTGTAATTTCTTAGCAATCCGACTGGATCGTCTTTTTC
***** * *
102803406 TTTTTGTTGATTTTTAAGTTTTAAATTAATAGTTTAAGCTTGAATTTAATCCTATTTCTGATTTT
1 TTTTTGTTGAAAAAAAAGTTTAAAATTAATAGTTTAACCTTGAATTTAATCCTATTTCTGATTTT
*
102803471 TAGTGTAATTTCTTAGCAATCCGATTGGAT
66 TAGTGTAATTTCTTAGCAATCCGACTGGAT
102803501 ATTTTTTTTT
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
105 31 0.39
106 46 0.57
107 3 0.04
ACGTcount: A:0.27, C:0.09, G:0.13, T:0.50
Consensus pattern (105 bp):
TTTTTGTTGAAAAAAAAGTTTAAAATTAATAGTTTAACCTTGAATTTAATCCTATTTCTGATTTT
TAGTGTAATTTCTTAGCAATCCGACTGGATCGTCTTTTTC
Found at i:102803894 original size:109 final size:108
Alignment explanation
Indices: 102803589--102803908 Score: 403
Period size: 108 Copynumber: 3.0 Consensus size: 108
102803579 CTTACTTTTA
* ** * * * *
102803589 AGTTTAAAATTAATAGTTTATCCTTTAATTGAATCGTAGT-TCTGGTATTTTTGTCTAATTTCTT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATA-TCTCTGGTATTTTTGTGTAAATTCTT
102803653 AGCAATTCGACTGGATCGTCTCTTTTCTTGTTGA-TTTTTTTGT
65 AGCAATTCGACTGGATCGTCTCTTTTCTTGTTGATTTTTTTTGT
* * *
102803696 CGTTTTAAATTAATAGTGTATCCTAGAATTAAATCATATATCTCTGGT-TTTTTGTGTAACTTCT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATC--ATATCTCTGGTATTTTTGTGTAAATTCT
* * *
102803760 TAGCAATTCGACCGGATCGGCTCTTTTCCTGTTGATTTTTTTTGT
64 TAGCAATTCGACTGGATCGTCTCTTTTCTTGTTGATTTTTTTTGT
*
102803805 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATATCTCTGGTATCTTTGTGTAAATTCTTA
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATATCTCTGGTATTTTTGTGTAAATTCTTA
* * * * * *
102803870 GTAATCCAACTAGATCCTCTTCTTTTTTTGTTGATTTTT
66 GCAATTCGACTGGATCGTC-TCTTTTCTTGTTGATTTTT
102803909 CTTTTTTAAT
Statistics
Matches: 182, Mismatches: 25, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
107 40 0.22
108 75 0.41
109 67 0.37
ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49
Consensus pattern (108 bp):
AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATATCTCTGGTATTTTTGTGTAAATTCTTA
GCAATTCGACTGGATCGTCTCTTTTCTTGTTGATTTTTTTTGT
Found at i:102806605 original size:33 final size:31
Alignment explanation
Indices: 102806549--102806612 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 31
102806539 AGAAAGAAAG
*
102806549 AACATTATTATTTGGAATAGAGAT-ATAAAA
1 AACATTATTATTTGCAATAGAGATAATAAAA
102806579 AACATTATTATTTGCATGATACGAGATAATAAAA
1 AACATTATTATTTGCA--ATA-GAGATAATAAAA
102806613 TTTATAAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 15 0.52
32 3 0.10
33 5 0.17
34 6 0.21
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (31 bp):
AACATTATTATTTGCAATAGAGATAATAAAA
Found at i:102807860 original size:13 final size:13
Alignment explanation
Indices: 102807834--102807867 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
102807824 TTATGAATGG
102807834 AAAAAAGTTGTAAT
1 AAAAAA-TTGTAAT
*
102807848 AAAAAATTTTAAT
1 AAAAAATTGTAAT
102807861 AAAAAAT
1 AAAAAAT
102807868 AATATACGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (13 bp):
AAAAAATTGTAAT
Found at i:102809728 original size:31 final size:31
Alignment explanation
Indices: 102809693--102809752 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
102809683 AACCAAAAGG
102809693 GTAAATTGT-ATTTGTAGTCATCCAACTATTA
1 GTAAATT-TCATTTGTAGTCATCCAACTATTA
* * *
102809724 GTAAATTTCTTTTTTGGTCATCCAACTAT
1 GTAAATTTCATTTGTAGTCATCCAACTAT
102809753 AAAAAGTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (31 bp):
GTAAATTTCATTTGTAGTCATCCAACTATTA
Found at i:102810235 original size:267 final size:266
Alignment explanation
Indices: 102809745--102810248 Score: 713
Period size: 267 Copynumber: 1.9 Consensus size: 266
102809735 TTTTGGTCAT
* ** * *
102809745 CCAACTATAAAAAGTTACAAAATGGTTACTCAAATATTTAATTTTGTTTTTTAGTCACCCAACTA
1 CCAACTATAAAAAGTTACAAAATAGTTACTCAAATATACAATTGTCTTTTTTAGTCACCCAACTA
* * * * * * * * **
102809810 CCTTAGATTTTTGAGTGTTTCTATTTTTACGTTAGCTAGCTGGTGGCAGAAAAAGTGATCGAATT
66 CCTTAGATTTTTGAGTGTTGCCATTTTTACATTAGCCAACTGGTGACAAAAAAAGTGATCAAACA
* **
102809875 ATGAAAAGTTACAAAATAGTAACTCAACTGTTCATGTTTATCTATTTTAGTCACCCAACTATCTT
131 ATGAAAAGTTACAAAATAGTAACGCAACTAATCATGTTTATCTATTTTAGTCACCCAACTATCTT
*
102809940 GAATTTTTGGGTGTTTTACTGTTTTCATTTTTACGTTAGCCAACAAGACAAAATTGAATAGTCGT
196 GAATTTTTGGGTGTTTTACTGGTTTCATTTTTACGTTAGCCAACAAGACAAAATTGAATAGTCGT
102810005 GGTTAC
261 GGTTAC
*
102810011 CCAACTATAAAAAGTTACAAAATAGTTACTCAATTATACAATTGTCTTTTTTAGTCACCCAACTA
1 CCAACTATAAAAAGTTACAAAATAGTTACTCAAATATACAATTGTCTTTTTTAGTCACCCAACTA
* * * *
102810076 TCTTGGATTTTTGGGTGTTGCCATTTTTACATTAGCCAACTGGTGACAAAAAAAAGTTATCAAAC
66 CCTTAGATTTTTGAGTGTTGCCATTTTTACATTAGCCAACTGGTGAC-AAAAAAAGTGATCAAAC
* * * * *
102810141 AATGAAAAGTTACAAAATAGTAACGGAACTAATCAAT-TTTGTCTTTTTTAGTCACCCAATTCTC
130 AATGAAAAGTTACAAAATAGTAACGCAACTAATC-ATGTTTATCTATTTTAGTCACCCAACTATC
*
102810205 TTGGATTTTTGGGTGTTTTACTGGTTTCATTTTTACGTTAGCCA
194 TTGAATTTTTGGGTGTTTTACTGGTTTCATTTTTACGTTAGCCA
102810249 GCTGGTGATA
Statistics
Matches: 206, Mismatches: 30, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
266 97 0.47
267 107 0.52
268 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (266 bp):
CCAACTATAAAAAGTTACAAAATAGTTACTCAAATATACAATTGTCTTTTTTAGTCACCCAACTA
CCTTAGATTTTTGAGTGTTGCCATTTTTACATTAGCCAACTGGTGACAAAAAAAGTGATCAAACA
ATGAAAAGTTACAAAATAGTAACGCAACTAATCATGTTTATCTATTTTAGTCACCCAACTATCTT
GAATTTTTGGGTGTTTTACTGGTTTCATTTTTACGTTAGCCAACAAGACAAAATTGAATAGTCGT
GGTTAC
Found at i:102822960 original size:13 final size:12
Alignment explanation
Indices: 102822942--102822985 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
102822932 ACCAAACTAG
102822942 GAGAGAAAGAAAA
1 GAGAGAAA-AAAA
102822955 GAGAGAAAAAAA
1 GAGAGAAAAAAA
* *
102822967 AAAAGAAAAAAA
1 GAGAGAAAAAAA
102822979 GAG-GAAA
1 GAGAGAAA
102822986 TTGTAGCTGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 4 0.15
12 15 0.56
13 8 0.30
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
GAGAGAAAAAAA
Found at i:102829751 original size:92 final size:90
Alignment explanation
Indices: 102829586--102829755 Score: 232
Period size: 92 Copynumber: 1.9 Consensus size: 90
102829576 TGGATCACTA
* * *
102829586 GATTTAGCACAACTTCCATTTAGGCCATAAACTTTTAATTTTGTTAAATTACTTAGTTGAACTTC
1 GATTTAGCACAACTTCCATTTAAGCCATAAACTTTTAATTTTATTAAATTACATAGTTGAACTTC
*
102829651 TATTATTAATAAAATAAGGATGATTG
66 TACTATTAA-AAAATAAGGATGATTG
* * * * *
102829677 GATTTAGTACAACTTTCATTTAAGTCATAAACTTTTTAATTTTATTAAATTACATGGTTGAATTT
1 GATTTAGCACAACTTCCATTTAAGCCATAAAC-TTTTAATTTTATTAAATTACATAGTTGAACTT
*
102829742 CTGCTATTAAAAAA
65 CTACTATTAAAAAA
102829756 GTAAATCACT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
91 32 0.47
92 36 0.53
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (90 bp):
GATTTAGCACAACTTCCATTTAAGCCATAAACTTTTAATTTTATTAAATTACATAGTTGAACTTC
TACTATTAAAAAATAAGGATGATTG
Found at i:102838617 original size:20 final size:20
Alignment explanation
Indices: 102838588--102838626 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
102838578 GGAGTAAATG
102838588 TGTTTAAAAT-TAGTTCTACA
1 TGTTTAAAATATA-TTCTACA
*
102838608 TGTTTTAAATATATTCTAC
1 TGTTTAAAATATATTCTAC
102838627 GTCATATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (20 bp):
TGTTTAAAATATATTCTACA
Found at i:102838950 original size:23 final size:24
Alignment explanation
Indices: 102838916--102838969 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 24
102838906 CAGCCACGTC
102838916 AATTTTTAATAGTAGAAATGGATG
1 AATTTTTAATAGTAGAAATGGATG
102838940 AATTTTT-ATAGTAGAAATGGATG
1 AATTTTTAATAGTAGAAATGGATG
102838963 AATTTTT
1 AATTTTT
102838970 TAACAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 23 0.77
24 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.43
Consensus pattern (24 bp):
AATTTTTAATAGTAGAAATGGATG
Found at i:102838979 original size:22 final size:23
Alignment explanation
Indices: 102838931--102838980 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
102838921 TTAATAGTAG
** *
102838931 AAATGGATGAATTTTTATAGTAG
1 AAATGGATGAATTTTTATAACAA
102838954 AAATGGATGAATTTTT-TAACAA
1 AAATGGATGAATTTTTATAACAA
102838976 AAATG
1 AAATG
102838981 ACTGATTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (23 bp):
AAATGGATGAATTTTTATAACAA
Found at i:102845111 original size:3 final size:3
Alignment explanation
Indices: 102845103--102845137 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
102845093 AACAAATAGG
102845103 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
102845138 GAACTAAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:102847203 original size:23 final size:23
Alignment explanation
Indices: 102847174--102847219 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
102847164 TTGCAACACT
102847174 CAATTTCTTCAACAACTAAACTA
1 CAATTTCTTCAACAACTAAACTA
102847197 CAATTTCTTCAACAACTAAACTA
1 CAATTTCTTCAACAACTAAACTA
102847220 GAAAAAGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.30
Consensus pattern (23 bp):
CAATTTCTTCAACAACTAAACTA
Found at i:102848316 original size:30 final size:31
Alignment explanation
Indices: 102848272--102848347 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 31
102848262 TTTTAGGTCC
102848272 AATTTAGTACTTAAACTTAACAAATTTTCTT
1 AATTTAGTACTTAAACTTAACAAATTTTCTT
* * **
102848303 AATTTAG-ACTTAAAGTTGACACTTTTTCTT
1 AATTTAGTACTTAAACTTAACAAATTTTCTT
*
102848333 AAATT-GATACTTAAA
1 AATTTAG-TACTTAAA
102848348 GTCTTAAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
29 1 0.03
30 23 0.61
31 14 0.37
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (31 bp):
AATTTAGTACTTAAACTTAACAAATTTTCTT
Found at i:102862935 original size:23 final size:23
Alignment explanation
Indices: 102862902--102862950 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
102862892 GCTCCAATAT
*
102862902 TAACAATAATAAC-AATAATAGAA
1 TAACAACAATAACAAATAA-AGAA
102862925 TAACAACAATAACAAATAAAGAA
1 TAACAACAATAACAAATAAAGAA
102862948 TAA
1 TAA
102862951 TAATGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.67, C:0.10, G:0.04, T:0.18
Consensus pattern (23 bp):
TAACAACAATAACAAATAAAGAA
Found at i:102866768 original size:15 final size:16
Alignment explanation
Indices: 102866748--102866778 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
102866738 AATTTATTTT
102866748 TATATTTGAT-TTAAA
1 TATATTTGATATTAAA
102866763 TATATTTGATATTAAA
1 TATATTTGATATTAAA
102866779 ATTTCAATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TATATTTGATATTAAA
Found at i:102872659 original size:88 final size:88
Alignment explanation
Indices: 102872510--102872672 Score: 317
Period size: 88 Copynumber: 1.9 Consensus size: 88
102872500 CAGAAGCTGC
102872510 AAAATCAAGCACAACAGAAAAATATTGAAGCTCAAGTGGCTGAAGATAGTAGTGACAATGAGGAG
1 AAAATCAAGCACAACAGAAAAATATTGAAGCTCAAGTGGCTGAAGATAGTAGTGACAATGAGGAG
102872575 CGGGTCTTTAGGCAGACCTAGGG
66 CGGGTCTTTAGGCAGACCTAGGG
*
102872598 AAAATCAAGCACAACAGAAAAATATTGAAGCTCAAGTGGCTGAAGATAGTAGTGACCATGAGGAG
1 AAAATCAAGCACAACAGAAAAATATTGAAGCTCAAGTGGCTGAAGATAGTAGTGACAATGAGGAG
102872663 CGGGTCTTTA
66 CGGGTCTTTA
102872673 CTGTGTCATG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 74 1.00
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.19
Consensus pattern (88 bp):
AAAATCAAGCACAACAGAAAAATATTGAAGCTCAAGTGGCTGAAGATAGTAGTGACAATGAGGAG
CGGGTCTTTAGGCAGACCTAGGG
Found at i:102875726 original size:16 final size:16
Alignment explanation
Indices: 102875705--102875736 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
102875695 ACCAAGGAGA
*
102875705 AATTCATGCACGTAAG
1 AATTCATGCACATAAG
102875721 AATTCATGCACATAAG
1 AATTCATGCACATAAG
102875737 TCTTACGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (16 bp):
AATTCATGCACATAAG
Found at i:102876526 original size:16 final size:16
Alignment explanation
Indices: 102876490--102876531 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
102876480 CGGTTACAGA
*
102876490 TTATTTA-ATTTAATT
1 TTATTTATATTAAATT
*
102876505 TAATTTATATTAAATT
1 TTATTTATATTAAATT
102876521 TTATTTATATT
1 TTATTTATATT
102876532 TCATATGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATTTATATTAAATT
Found at i:102881027 original size:14 final size:14
Alignment explanation
Indices: 102881008--102881038 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
102880998 TTACACACAC
102881008 ATACATATATAGAT
1 ATACATATATAGAT
102881022 ATACATATATAGAT
1 ATACATATATAGAT
102881036 ATA
1 ATA
102881039 TACACGCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (14 bp):
ATACATATATAGAT
Found at i:102889509 original size:15 final size:15
Alignment explanation
Indices: 102889491--102889520 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
102889481 AAATTTTAAT
*
102889491 TTTTTATAGTTTATA
1 TTTTTATAATTTATA
102889506 TTTTTATAATTTATA
1 TTTTTATAATTTATA
102889521 AAGGATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:102890824 original size:26 final size:26
Alignment explanation
Indices: 102890775--102890826 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
102890765 AATTTTAATT
*
102890775 TAAAATTAATGATTTTTTAATAAAAAA
1 TAAAATAAATGATTTTTT-ATAAAAAA
102890802 TAAAATAATATGATTTTTT-TAAAAA
1 TAAAATAA-ATGATTTTTTATAAAAA
102890827 TGATTTAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 7 0.30
28 10 0.43
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (26 bp):
TAAAATAAATGATTTTTTATAAAAAA
Found at i:102892955 original size:31 final size:31
Alignment explanation
Indices: 102892898--102892964 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
102892888 ATTTTTTATC
* * *
102892898 CCTT-AATTTGATAATTAGGTTCATTTTGGT
1 CCTTGAATTTGACAATTAGATTCATTTTAGT
*
102892928 CTTTGAATTTGACAATTAGA-TCTATTTTAGT
1 CCTTGAATTTGACAATTAGATTC-ATTTTAGT
102892959 CCTTGA
1 CCTTGA
102892965 CTCGAATTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.48
Consensus pattern (31 bp):
CCTTGAATTTGACAATTAGATTCATTTTAGT
Found at i:102901039 original size:18 final size:18
Alignment explanation
Indices: 102901008--102901042 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
102900998 ACAAAGATTT
102901008 TGTTTTTTTGAGTTTGAG
1 TGTTTTTTTGAGTTTGAG
102901026 TGTTTGTTTT-AGTTTGA
1 TGTTT-TTTTGAGTTTGA
102901043 AAGTGAGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.11, C:0.00, G:0.26, T:0.63
Consensus pattern (18 bp):
TGTTTTTTTGAGTTTGAG
Found at i:102913355 original size:30 final size:30
Alignment explanation
Indices: 102913321--102913379 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
102913311 AAAGACTCTA
*
102913321 TGGCATGTCAATTATATCTAATTTAGTTTT
1 TGGCATGTCAACTATATCTAATTTAGTTTT
*
102913351 TGGCATGTCAACTATATCTGATTTAGTTT
1 TGGCATGTCAACTATATCTAATTTAGTTT
102913380 AACTTAGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.47
Consensus pattern (30 bp):
TGGCATGTCAACTATATCTAATTTAGTTTT
Found at i:102914451 original size:13 final size:13
Alignment explanation
Indices: 102914433--102914457 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102914423 GAAAGATATC
102914433 TTTCTCTTTTATT
1 TTTCTCTTTTATT
102914446 TTTCTCTTTTAT
1 TTTCTCTTTTAT
102914458 ATATATATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCTCTTTTATT
Found at i:102919713 original size:20 final size:21
Alignment explanation
Indices: 102919680--102919718 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
102919670 ATGGAATCAA
102919680 AAAAAATTCAAACTTTAATGC
1 AAAAAATTCAAACTTTAATGC
*
102919701 AAAAAATT-GAACTTTAAT
1 AAAAAATTCAAACTTTAAT
102919719 TGTAAATCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (21 bp):
AAAAAATTCAAACTTTAATGC
Found at i:102920130 original size:12 final size:12
Alignment explanation
Indices: 102920115--102920139 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102920105 CCCAGCTTGC
102920115 GCCTCCGCCTCA
1 GCCTCCGCCTCA
102920127 GCCTCCGCCTCA
1 GCCTCCGCCTCA
102920139 G
1 G
102920140 GCCGGTGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.56, G:0.20, T:0.16
Consensus pattern (12 bp):
GCCTCCGCCTCA
Found at i:102921410 original size:51 final size:53
Alignment explanation
Indices: 102921335--102921437 Score: 156
Period size: 51 Copynumber: 2.0 Consensus size: 53
102921325 AAAAGAAGAA
102921335 TTTTTTGGGTGCTAGTCATGTAATGGCCGACACCAGATATG-AAAAA-AAAAT
1 TTTTTTGGGTGCTAGTCATGTAATGGCCGACACCAGATATGTAAAAATAAAAT
* * * *
102921386 TTTTTTTGGTGCTGGTCATTTAATGGCCGACACCAGCTATGTAAAAATAAAA
1 TTTTTTGGGTGCTAGTCATGTAATGGCCGACACCAGATATGTAAAAATAAAA
102921438 ATAAAAATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 37 0.80
52 5 0.11
53 4 0.09
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (53 bp):
TTTTTTGGGTGCTAGTCATGTAATGGCCGACACCAGATATGTAAAAATAAAAT
Found at i:102937831 original size:4 final size:4
Alignment explanation
Indices: 102937816--102937867 Score: 68
Period size: 4 Copynumber: 13.0 Consensus size: 4
102937806 AGAAAAAAAC
* * * *
102937816 GTAT GCAT GTAT GTAT GTAT ATAC ATAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
102937864 GTAT
1 GTAT
102937868 TGATATTTGG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.46
Consensus pattern (4 bp):
GTAT
Found at i:102951869 original size:39 final size:38
Alignment explanation
Indices: 102951826--102951919 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 38
102951816 ACCAATATGG
**
102951826 CACCCAGTACCTCATCGG-ATAGTTTGAAGTAATAGTTGA
1 CACCCAGTACCTCATCGGCATAG-CCGAAGTAA-AGTTGA
** * *
102951865 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAAAGTTGG
1 CACCCAGTACCTCATCGGCATAGCCGAAGTAAAGTTGA
*
102951903 TACCCAGTACCTCATCG
1 CACCCAGTACCTCATCG
102951920 AATCTATCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
38 19 0.42
39 23 0.51
40 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (38 bp):
CACCCAGTACCTCATCGGCATAGCCGAAGTAAAGTTGA
Found at i:102953542 original size:5 final size:5
Alignment explanation
Indices: 102953524--102953554 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
102953514 TTTCTTTTAT
102953524 ATATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA
102953555 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:102953594 original size:27 final size:26
Alignment explanation
Indices: 102953530--102953594 Score: 60
Period size: 27 Copynumber: 2.4 Consensus size: 26
102953520 TTATATATAA
102953530 TAATAATATAATATAATATAATATACT
1 TAATAATA-AATATAATATAATATACT
* **
102953557 TAATTATTAAATA-AATATATATATTTT
1 TAA-TAATAAATATAATATA-ATATACT
102953584 TAATCAATAAA
1 TAAT-AATAAA
102953595 ATCTTTGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
26 7 0.23
27 20 0.65
28 4 0.13
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (26 bp):
TAATAATAAATATAATATAATATACT
Found at i:102956570 original size:130 final size:131
Alignment explanation
Indices: 102956361--102956625 Score: 379
Period size: 130 Copynumber: 2.0 Consensus size: 131
102956351 CATTCATTCA
** ** **
102956361 AAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGTGGAATCGTGCCCTAACGTGT
1 AAAATTCTTCAAAACGAAGACGAGATTCGATACTAAGCAATTAATGGAATCGTGCCCTAACGTGT
* *
102956426 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCACATCTTT
66 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTTC
102956491 T
131 T
* *
102956492 AAAATTCTTCAAAACGAAGACGAGGTTCGATACTAAGCAA-TAATGGAATCGTGCTCTAACGTGT
1 AAAATTCTTCAAAACGAAGACGAGATTCGATACTAAGCAATTAATGGAATCGTGCCCTAACGTGT
* * * * * *
102956556 TGGGTTGCAATTTCGCGTTTGCTCAAAGTAATTGAGTATCCCTTCAAAATTTCATTCATATCTTC
66 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTTC
102956621 T
131 T
102956622 AAAA
1 AAAA
102956626 ATTATTTAAA
Statistics
Matches: 118, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
130 83 0.70
131 35 0.30
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (131 bp):
AAAATTCTTCAAAACGAAGACGAGATTCGATACTAAGCAATTAATGGAATCGTGCCCTAACGTGT
TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTTC
T
Found at i:102957011 original size:130 final size:130
Alignment explanation
Indices: 102956764--102957000 Score: 332
Period size: 130 Copynumber: 1.8 Consensus size: 130
102956754 AAAATGCTTA
* **
102956764 AAAACGAAGACGATGTTCAATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCT
1 AAAACGAAGACGATGTTCAATGTTTGACGATTTGAGAATCAAGCCCTATCGTGCTGGGTTGCGCT
* * * * *
102956829 TTTTCATTGGTTCGAAACAATTGAAGATCCCTTCGGAGTTTCACTCACATTTTCTAAAATCTTTC
66 TTTTCATTGGTCCAAAACAATCGAAGATCCCTTCGGAATTTCACACACATTTTCTAAAATCTTTC
* * *
102956894 AAAATGAAGGCGATGTTCGATGTTTGACGATTTGAGAATCAAGCCCTATCGTGCTGGGTTGCGCT
1 AAAACGAAGACGATGTTCAATGTTTGACGATTTGAGAATCAAGCCCTATCGTGCTGGGTTGCGCT
* * *
102956959 TTTTCATTTGTCCAAAATAATCGAATATCTCCTT-GGAATTTC
66 TTTTCATTGGTCCAAAACAATCGAAGATC-CCTTCGGAATTTC
102957001 GCACGTATTT
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
130 89 0.96
131 4 0.04
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (130 bp):
AAAACGAAGACGATGTTCAATGTTTGACGATTTGAGAATCAAGCCCTATCGTGCTGGGTTGCGCT
TTTTCATTGGTCCAAAACAATCGAAGATCCCTTCGGAATTTCACACACATTTTCTAAAATCTTTC
Found at i:102960853 original size:21 final size:22
Alignment explanation
Indices: 102960809--102960853 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
102960799 AGTATAAATA
*
102960809 TATATACATATATCATATAAGTT
1 TATATACA-ATATCATACAAGTT
*
102960832 TATATAC-ATATCATACATGTT
1 TATATACAATATCATACAAGTT
102960853 T
1 T
102960854 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (22 bp):
TATATACAATATCATACAAGTT
Found at i:102962998 original size:35 final size:35
Alignment explanation
Indices: 102962911--102962998 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 35
102962901 CGGGGTATAA
*
102962911 GGTTT-AGGTTTGAGG-TTTGAGGTTTAGAGTTTAT
1 GGTTTGAGGTTT-AGGATTTGAGGTTTAGAGTTCAT
* * * * * *
102962945 GATTGGATGTTCAAGATTTGAGGTTTAGGGTTCAT
1 GGTTTGAGGTTTAGGATTTGAGGTTTAGAGTTCAT
102962980 GGTTTGAGGTTTAGGATTT
1 GGTTTGAGGTTTAGGATTT
102962999 TGGATTTTGG
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
34 5 0.12
35 35 0.88
ACGTcount: A:0.19, C:0.02, G:0.34, T:0.44
Consensus pattern (35 bp):
GGTTTGAGGTTTAGGATTTGAGGTTTAGAGTTCAT
Found at i:102963223 original size:14 final size:14
Alignment explanation
Indices: 102963204--102963243 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
102963194 TCTCGAACCC
102963204 TAAACCCCAAACTT
1 TAAACCCCAAACTT
102963218 TAAACCCCAAACTT
1 TAAACCCCAAACTT
* *
102963232 TGAACCTCAAAC
1 TAAACCCCAAAC
102963244 CCAAATCTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.42, C:0.35, G:0.03, T:0.20
Consensus pattern (14 bp):
TAAACCCCAAACTT
Found at i:102963248 original size:20 final size:21
Alignment explanation
Indices: 102963223--102963277 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 21
102963213 AACTTTAAAC
*
102963223 CCCAAACT-TTGAACCTCAAA
1 CCCAAACTCTCGAACCTCAAA
102963243 CCCAAA-TCTCGAACCTCAAA
1 CCCAAACTCTCGAACCTCAAA
* *
102963263 CACAAACACT-GAACC
1 CCCAAACTCTCGAACC
102963278 ATGAGCCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 1 0.03
20 27 0.90
21 2 0.07
ACGTcount: A:0.42, C:0.38, G:0.05, T:0.15
Consensus pattern (21 bp):
CCCAAACTCTCGAACCTCAAA
Found at i:102963302 original size:6 final size:6
Alignment explanation
Indices: 102963271--102963330 Score: 66
Period size: 6 Copynumber: 9.3 Consensus size: 6
102963261 AACACAAACA
* *
102963271 CTGAAC CATGAGC CATGAACC CTGAAC CTGAAC CTGAAC CTGAAC CAGAAC
1 CTGAAC C-TGAAC C-TGAA-C CTGAAC CTGAAC CTGAAC CTGAAC CTGAAC
102963322 CTTGAAC CT
1 C-TGAAC CT
102963331 TGAAACTTGA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 27 0.57
7 18 0.38
8 2 0.04
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (6 bp):
CTGAAC
Found at i:102963339 original size:7 final size:7
Alignment explanation
Indices: 102963322--102963355 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
102963312 GAACCAGAAC
*
102963322 CTTGAAC
1 CTTGAAA
102963329 CTTGAAA
1 CTTGAAA
102963336 CTTGAAA
1 CTTGAAA
102963343 CTTGAAA
1 CTTGAAA
102963350 CTTGAA
1 CTTGAA
102963356 CTTTGAACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (7 bp):
CTTGAAA
Found at i:102963341 original size:14 final size:14
Alignment explanation
Indices: 102963322--102963362 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
102963312 GAACCAGAAC
102963322 CTTGAACCTTGAAA
1 CTTGAACCTTGAAA
*
102963336 CTTGAAACTTGAAA
1 CTTGAACCTTGAAA
*
102963350 CTTGAACTTTGAA
1 CTTGAACCTTGAA
102963363 CACGAACCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (14 bp):
CTTGAACCTTGAAA
Found at i:102963587 original size:27 final size:27
Alignment explanation
Indices: 102963541--102963610 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
102963531 AACCATGAAC
*
102963541 TTGAGTTTAGAGTTTAAGGTTCGAGGT
1 TTGAGTTTTGAGTTTAAGGTTCGAGGT
102963568 TTGAGATTTTGAGTTT-AGGTTCGAGGT
1 TTGAG-TTTTGAGTTTAAGGTTCGAGGT
*
102963595 TTAGGGTTTTGAGTTT
1 TT-GAGTTTTGAGTTT
102963611 CGGATAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
27 28 0.72
28 11 0.28
ACGTcount: A:0.19, C:0.03, G:0.33, T:0.46
Consensus pattern (27 bp):
TTGAGTTTTGAGTTTAAGGTTCGAGGT
Found at i:102963666 original size:22 final size:22
Alignment explanation
Indices: 102963641--102963682 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
102963631 ATTATGTGTT
102963641 AATGACATGAAAAAATTGTAGA
1 AATGACATGAAAAAATTGTAGA
* * *
102963663 AATGTCATTAAATAATTGTA
1 AATGACATGAAAAAATTGTA
102963683 AAGGAACCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.14, T:0.31
Consensus pattern (22 bp):
AATGACATGAAAAAATTGTAGA
Found at i:102968749 original size:31 final size:30
Alignment explanation
Indices: 102968707--102968798 Score: 94
Period size: 31 Copynumber: 3.0 Consensus size: 30
102968697 AAATTGTTGT
* *
102968707 TAAGCCCTTCAAAATTTATGAAAATTTTAGC
1 TAAGCCTTTCAAAATTTTTGAAAATTTTA-C
* * * *
102968738 TAGGTCTTTCAAAATTTTTAGAAATTTTTAT
1 TAAGCCTTTCAAAATTTTT-GAAAATTTTAC
*
102968769 TAAGCCTCTCAAAATTTTTGAAAAATTTTA
1 TAAGCCTTTCAAAATTTTTG-AAAATTTTA
102968799 ATTAAACCGC
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
30 1 0.02
31 39 0.80
32 9 0.18
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (30 bp):
TAAGCCTTTCAAAATTTTTGAAAATTTTAC
Found at i:102968823 original size:30 final size:31
Alignment explanation
Indices: 102968746--102968892 Score: 133
Period size: 31 Copynumber: 4.8 Consensus size: 31
102968736 GCTAGGTCTT
* * *
102968746 TCAAAATTTTTAGAAATTTTTATTAAGCCTC
1 TCAAAATTTTTAAAAATTTTAATTAAACCTC
*
102968777 TCAAAATTTTTGAAAAATTTTAATTAAACCGC
1 TCAAAATTTTT-AAAAATTTTAATTAAACCTC
*
102968809 -C-AAATTTTATAAAAATTTTCATTAAACC-C
1 TCAAAATTTT-TAAAAATTTTAATTAAACCTC
* * *
102968838 TCCAAAAGTTTTGAAAGTTTTAATTAAACC-C
1 T-CAAAATTTTTAAAAATTTTAATTAAACCTC
* **
102968869 T-TAAATTTTTTGAAATTTTAATTA
1 TCAAAATTTTTAAAAATTTTAATTA
102968893 GCCCCTCAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
29 19 0.20
30 24 0.25
31 32 0.33
32 22 0.23
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (31 bp):
TCAAAATTTTTAAAAATTTTAATTAAACCTC
Found at i:102968864 original size:31 final size:30
Alignment explanation
Indices: 102968747--102968892 Score: 129
Period size: 30 Copynumber: 4.8 Consensus size: 30
102968737 CTAGGTCTTT
* *
102968747 CAAAATTTTTAGAAATTTTTATT-AAGCCTC
1 CAAAATTTTT-GAAATTTTAATTAAACCCTC
*
102968777 TCAAAATTTTTGAAAAATTTTAATTAAA-CCGC
1 -CAAAATTTTTG--AAATTTTAATTAAACCCTC
* *
102968809 C-AAATTTTATAAAAATTTTCATTAAACCCTC
1 CAAAATTTT-T-GAAATTTTAATTAAACCCTC
*
102968840 CAAAAGTTTTGAAAGTTTTAATTAAACCCT-
1 CAAAATTTTTGAAA-TTTTAATTAAACCCTC
* *
102968870 TAAATTTTTTGAAATTTTAATTA
1 CAAAATTTTTGAAATTTTAATTA
102968893 GCCCCTCAAA
Statistics
Matches: 96, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
29 9 0.09
30 35 0.36
31 31 0.32
32 19 0.20
33 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (30 bp):
CAAAATTTTTGAAATTTTAATTAAACCCTC
Found at i:102968867 original size:61 final size:61
Alignment explanation
Indices: 102968749--102968903 Score: 165
Period size: 61 Copynumber: 2.6 Consensus size: 61
102968739 AGGTCTTTCA
* * * *
102968749 AAATTTTTAGAAATTTTTATTAAGCCTCTCAAAATTTTTGAAAAATTTTAATTAAACCGCC
1 AAATTTTTAAAAATTTTCATTAACCCTCTCAAAAGTTTTGAAAAATTTTAATTAAACCGCC
* *
102968810 AAATTTTATAAAAATTTTCATTAAACCCTC-CAAAAGTTTTG-AAAGTTTTAATTAAACC-CTT
1 AAATTTT-TAAAAATTTTCATT-AACCCTCTCAAAAGTTTTGAAAAATTTTAATTAAACCGC-C
** * *
102968871 AAATTTTTTGAAATTTTAATTAGCCC-CTCAAAA
1 AAATTTTTAAAAATTTTCATTAACCCTCTCAAAA
102968904 AAACTAACCT
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
58 1 0.01
59 9 0.11
60 12 0.15
61 30 0.38
62 22 0.28
63 6 0.08
ACGTcount: A:0.40, C:0.14, G:0.06, T:0.40
Consensus pattern (61 bp):
AAATTTTTAAAAATTTTCATTAACCCTCTCAAAAGTTTTGAAAAATTTTAATTAAACCGCC
Found at i:102985996 original size:6 final size:6
Alignment explanation
Indices: 102985985--102986017 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
102985975 TTCATGCATG
*
102985985 CATATA CATATA CATATA CATAGA CATATA CAT
1 CATATA CATATA CATATA CATATA CATATA CAT
102986018 GTATTGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.30
Consensus pattern (6 bp):
CATATA
Found at i:102986744 original size:28 final size:28
Alignment explanation
Indices: 102986703--102986756 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
102986693 AACGTGCCAT
102986703 TTTTATAACCCATGGGATTATAATAAGG
1 TTTTATAACCCATGGGATTATAATAAGG
* *
102986731 TTTTATCACTCATGGGATTATAATAA
1 TTTTATAACCCATGGGATTATAATAA
102986757 AGATTTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (28 bp):
TTTTATAACCCATGGGATTATAATAAGG
Found at i:102986763 original size:28 final size:28
Alignment explanation
Indices: 102986704--102986764 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
102986694 ACGTGCCATT
* *
102986704 TTTATAACCCATGGGATTATAATAAGGT
1 TTTATAACCCATGGGATTATAATAAAGA
* *
102986732 TTTATCACTCATGGGATTATAATAAAGA
1 TTTATAACCCATGGGATTATAATAAAGA
102986760 TTTAT
1 TTTAT
102986765 GATGAATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (28 bp):
TTTATAACCCATGGGATTATAATAAAGA
Found at i:102987564 original size:22 final size:24
Alignment explanation
Indices: 102987512--102987564 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 24
102987502 TTAGCGATTA
102987512 TGAAATTGATGCTATAAATAAGTG
1 TGAAATTGATGCTATAAATAAGTG
** * *
102987536 TTTAATTG-TGCTA-ATATTAGTG
1 TGAAATTGATGCTATAAATAAGTG
102987558 TGAAATT
1 TGAAATT
102987565 TTATGGCAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 12 0.52
23 5 0.22
24 6 0.26
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.42
Consensus pattern (24 bp):
TGAAATTGATGCTATAAATAAGTG
Found at i:102999777 original size:11 final size:11
Alignment explanation
Indices: 102999729--102999781 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
102999719 AAAAATATTT
*
102999729 ATTTTATTTAG
1 ATTTAATTTAG
102999740 AGGTTTAATTTAG
1 A--TTTAATTTAG
*
102999753 -TGTAATTCTAG
1 ATTTAATT-TAG
102999764 ATTTAATTTAG
1 ATTTAATTTAG
102999775 ATTTAAT
1 ATTTAAT
102999782 GTAATTATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 6 0.17
11 14 0.40
12 6 0.17
13 9 0.26
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (11 bp):
ATTTAATTTAG
Found at i:103004385 original size:15 final size:15
Alignment explanation
Indices: 103004365--103004442 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
103004355 TTTATGGAAA
103004365 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
103004380 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
103004394 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
103004410 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
103004424 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
103004440 ATC
1 ATC
103004443 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 8 0.17
15 31 0.66
16 8 0.17
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:103004393 original size:30 final size:30
Alignment explanation
Indices: 103004359--103004452 Score: 161
Period size: 30 Copynumber: 3.1 Consensus size: 30
103004349 TCCATATTTA
*
103004359 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
103004389 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
103004419 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
103004450 TGG
1 TGG
103004453 CATAATAAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
30 53 0.87
31 8 0.13
ACGTcount: A:0.41, C:0.06, G:0.26, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:103009048 original size:15 final size:15
Alignment explanation
Indices: 103009028--103009105 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
103009018 TTTATGGAAA
103009028 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
103009043 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
103009057 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
103009073 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
103009087 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
103009103 ATC
1 ATC
103009106 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 8 0.17
15 31 0.66
16 8 0.17
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:103009056 original size:30 final size:30
Alignment explanation
Indices: 103009022--103009115 Score: 161
Period size: 30 Copynumber: 3.1 Consensus size: 30
103009012 TCCATATTTA
*
103009022 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
103009052 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
103009082 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
103009113 TGG
1 TGG
103009116 CATAATAAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
30 53 0.87
31 8 0.13
ACGTcount: A:0.41, C:0.06, G:0.26, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:103011587 original size:34 final size:34
Alignment explanation
Indices: 103011549--103011622 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
103011539 TTTAGTCCCT
103011549 TAAAA-AAAAGATGAAATCATAAGTTCATACATGA
1 TAAAATAAAA-ATGAAATCATAAGTTCATACATGA
* *
103011583 TAAAATTACAATGAAATCATAAGTTCATACATGA
1 TAAAATAAAAATGAAATCATAAGTTCATACATGA
103011617 TAAAAT
1 TAAAAT
103011623 TACACTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 35 0.95
35 2 0.05
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.27
Consensus pattern (34 bp):
TAAAATAAAAATGAAATCATAAGTTCATACATGA
Found at i:103011623 original size:34 final size:34
Alignment explanation
Indices: 103011559--103011626 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
103011549 TAAAAAAAAG
103011559 ATGAAATCATAAGTTCATACATGATAAAATTACA
1 ATGAAATCATAAGTTCATACATGATAAAATTACA
103011593 ATGAAATCATAAGTTCATACATGATAAAATTACA
1 ATGAAATCATAAGTTCATACATGATAAAATTACA
103011627 CTTTAACCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (34 bp):
ATGAAATCATAAGTTCATACATGATAAAATTACA
Found at i:103012777 original size:4 final size:4
Alignment explanation
Indices: 103012768--103012792 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
103012758 AAATCAAAGG
103012768 TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA T
103012793 ATATGAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:103016304 original size:20 final size:20
Alignment explanation
Indices: 103016279--103016320 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
103016269 AAACCAAGTG
*
103016279 GGGGGTCAACACGCCCTTGT
1 GGGGGTCAACACGCCCGTGT
103016299 GGGGGTCAACACGCCCGTGT
1 GGGGGTCAACACGCCCGTGT
103016319 GG
1 GG
103016321 ATGAGGTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.29, G:0.40, T:0.17
Consensus pattern (20 bp):
GGGGGTCAACACGCCCGTGT
Found at i:103029492 original size:24 final size:24
Alignment explanation
Indices: 103029418--103029496 Score: 72
Period size: 24 Copynumber: 3.3 Consensus size: 24
103029408 AATTTGATAC
*
103029418 TTTTTTTCTAATTTGGTACCTAAA
1 TTTTTTTCTAATTTGGTACTTAAA
* * * * *
103029442 CCTTTTTTGT-ATCT-GAACTTGACA
1 -TTTTTTTCTAATTTGGTACTT-AAA
103029466 TTTTTTTCTAATTTGGTACTTAAA
1 TTTTTTTCTAATTTGGTACTTAAA
103029490 TTTTTTT
1 TTTTTTT
103029497 GGACCCAATT
Statistics
Matches: 40, Mismatches: 11, Indels: 7
0.69 0.19 0.12
Matches are distributed among these distances:
23 11 0.28
24 17 0.43
25 12 0.30
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.57
Consensus pattern (24 bp):
TTTTTTTCTAATTTGGTACTTAAA
Found at i:103029784 original size:4 final size:4
Alignment explanation
Indices: 103029775--103029800 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
103029765 GTTTTCAATA
103029775 AATT AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AA
103029801 AAGTAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (4 bp):
AATT
Found at i:103030068 original size:31 final size:31
Alignment explanation
Indices: 103030023--103030101 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
103030013 GACCCCCAAA
* * *
103030023 AAGTTTAGGCACCAACTTAAGAAAAAGTATC
1 AAGTTGAGGTACCAAATTAAGAAAAAGTATC
* * *
103030054 AAGTTGAGGTACCAAATTAGGACAAAGTGTC
1 AAGTTGAGGTACCAAATTAAGAAAAAGTATC
103030085 AAGTTGAGGTACCAAAT
1 AAGTTGAGGTACCAAAT
103030102 GTTATATTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.23
Consensus pattern (31 bp):
AAGTTGAGGTACCAAATTAAGAAAAAGTATC
Found at i:103039411 original size:27 final size:28
Alignment explanation
Indices: 103039370--103039427 Score: 100
Period size: 27 Copynumber: 2.1 Consensus size: 28
103039360 TTGTCCTCTC
103039370 TACTAGAAAACGAGCAAATTAATCTTTA
1 TACTAGAAAACGAGCAAATTAATCTTTA
*
103039398 TACTA-AAAATGAGCAAATTAATCTTTA
1 TACTAGAAAACGAGCAAATTAATCTTTA
103039425 TAC
1 TAC
103039428 GTTAGATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.31
Consensus pattern (28 bp):
TACTAGAAAACGAGCAAATTAATCTTTA
Found at i:103055423 original size:23 final size:24
Alignment explanation
Indices: 103055375--103055429 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 24
103055365 GGTTTAGTGT
*
103055375 AAAAAATTATGTATTGATAATATA
1 AAAAAATTATGTATTAATAATATA
* *
103055399 AAAAAATTAT-TA-TAATATTATT
1 AAAAAATTATGTATTAATAATATA
*
103055421 AAATAATTA
1 AAAAAATTA
103055430 AAAATAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 15 0.56
23 2 0.07
24 10 0.37
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (24 bp):
AAAAAATTATGTATTAATAATATA
Found at i:103055972 original size:20 final size:20
Alignment explanation
Indices: 103055947--103055986 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
103055937 CATGACGGAA
103055947 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
103055967 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
103055987 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:103060809 original size:31 final size:30
Alignment explanation
Indices: 103060763--103060823 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 30
103060753 ATAAATATTA
103060763 AATTTATACATAAATTTTGATTTAATGTAT
1 AATTTATACATAAATTTTGATTTAATGTAT
* *
103060793 AATTTAATATATAAATTTTGATTTAGTGTAT
1 AATTT-ATACATAAATTTTGATTTAATGTAT
103060824 TTATACACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (30 bp):
AATTTATACATAAATTTTGATTTAATGTAT
Found at i:103061733 original size:18 final size:19
Alignment explanation
Indices: 103061679--103061736 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
103061669 AAATTAGAAA
103061679 AAAAATTCAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
103061698 CAAAAATTCAAAATATTTAT
1 -AAAAATTCAAAATATTTAT
*
103061718 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
103061736 A
1 A
103061737 TTTTTAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
18 7 0.19
19 15 0.42
20 14 0.39
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:103063052 original size:29 final size:29
Alignment explanation
Indices: 103063019--103063075 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
103063009 ATTATTTAAG
103063019 TTAGAAAAATTGTGAAGCAATGAAATGAT
1 TTAGAAAAATTGTGAAGCAATGAAATGAT
*
103063048 TTAGAAACATTGTGAAGCAATGAAATGA
1 TTAGAAAAATTGTGAAGCAATGAAATGA
103063076 AATTACTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.05, G:0.21, T:0.26
Consensus pattern (29 bp):
TTAGAAAAATTGTGAAGCAATGAAATGAT
Found at i:103068736 original size:19 final size:19
Alignment explanation
Indices: 103068714--103068767 Score: 54
Period size: 23 Copynumber: 2.6 Consensus size: 19
103068704 TATTTTTATG
103068714 ATTTAAAAATAAATATTTT
1 ATTTAAAAATAAATATTTT
103068733 ATTTATAAAAAAATAAATATTTT
1 A-TT-T--AAAAATAAATATTTT
*
103068756 ATATTTAAAATA
1 AT-TTAAAAATA
103068768 TTGAAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
19 1 0.03
20 8 0.28
21 1 0.03
22 2 0.07
23 17 0.59
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTAAAAATAAATATTTT
Found at i:103068744 original size:23 final size:23
Alignment explanation
Indices: 103068718--103068765 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
103068708 TTTATGATTT
103068718 AAAAATAAATATTTTAT-TTATAA
1 AAAAATAAATATTTTATATT-TAA
103068741 AAAAATAAATATTTTATATTTAA
1 AAAAATAAATATTTTATATTTAA
103068764 AA
1 AA
103068766 TATTGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
AAAAATAAATATTTTATATTTAA
Found at i:103068965 original size:14 final size:15
Alignment explanation
Indices: 103068946--103068986 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
103068936 AAATAAGTTC
103068946 AAAAATCCAAAAT-A
1 AAAAATCCAAAATGA
*
103068960 AAAAAT-CAATATGA
1 AAAAATCCAAAATGA
*
103068974 AAAAATCGAAAAT
1 AAAAATCCAAAAT
103068987 TAAATCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
13 5 0.23
14 13 0.59
15 4 0.18
ACGTcount: A:0.68, C:0.10, G:0.05, T:0.17
Consensus pattern (15 bp):
AAAAATCCAAAATGA
Found at i:103076013 original size:56 final size:56
Alignment explanation
Indices: 103075911--103076072 Score: 193
Period size: 56 Copynumber: 2.9 Consensus size: 56
103075901 GAATAAAGAC
* * * *
103075911 AAGTTCATACTTCAATATGAGAACAATTGCCAAATTCAGGGACTAACTTAAAAAAA
1 AAGTTCATGCCTCAATATGAGAACAATTGCCAAGTTTAGGGACTAACTTAAAAAAA
* * *
103075967 AAGTTCATGCCTCAATATGAGAACAATTGCTAAGTTTAGGGGCTAACTTGAAACAAA
1 AAGTTCATGCCTCAATATGAGAACAATTGCCAAGTTTAGGGACTAACTT-AAAAAAA
* * * *
103076024 AA-TTCAAGTCC-CAATGTGGGAACAATTGCCAAGTTTAAGGACTAACTTA
1 AAGTTCATG-CCTCAATATGAGAACAATTGCCAAGTTTAGGGACTAACTTA
103076073 GACAACGAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
55 1 0.01
56 80 0.88
57 10 0.11
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (56 bp):
AAGTTCATGCCTCAATATGAGAACAATTGCCAAGTTTAGGGACTAACTTAAAAAAA
Found at i:103076935 original size:17 final size:17
Alignment explanation
Indices: 103076883--103076935 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
103076873 TTGAACTAAG
103076883 TTTT-ATTATTTTTTAAT
1 TTTTAATTATTTTTT-AT
**
103076900 TTTTAATT-TGTTTGAAT
1 TTTTAATTAT-TTTTTAT
103076917 TTTTAATTATTTTTTAT
1 TTTTAATTATTTTTTAT
103076934 TT
1 TT
103076936 AAACTAATCG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
17 22 0.76
18 7 0.24
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTTAATTATTTTTTAT
Found at i:103077759 original size:14 final size:14
Alignment explanation
Indices: 103077740--103077766 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
103077730 ATTAAAAGTT
103077740 TATAAATTTTTATA
1 TATAAATTTTTATA
103077754 TATAAATTTTTAT
1 TATAAATTTTTAT
103077767 TTGGAGTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATAAATTTTTATA
Found at i:103078461 original size:31 final size:31
Alignment explanation
Indices: 103078426--103078494 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
103078416 ATTAACTACC
*
103078426 CAATGACTTAAATAAAAACTTTTAAATAGTT
1 CAATGACTTAAATAAAAACTTTCAAATAGTT
* * *
103078457 CAATGTCTTAAATGAAATCTTTCAAATAGTT
1 CAATGACTTAAATAAAAACTTTCAAATAGTT
*
103078488 TAATGAC
1 CAATGAC
103078495 CAAATTATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTCAAATAGTT
Found at i:103080780 original size:24 final size:24
Alignment explanation
Indices: 103080753--103080804 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
103080743 TCAGTAAGTC
*
103080753 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
103080777 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
103080801 AAAT
1 AAAT
103080805 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:103082743 original size:24 final size:24
Alignment explanation
Indices: 103082716--103082767 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
103082706 TTAGTAAGTC
*
103082716 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
103082740 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
103082764 AAAT
1 AAAT
103082768 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:103089866 original size:6 final size:6
Alignment explanation
Indices: 103089860--103089892 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
103089850 AAATGATGAT
*
103089860 GAAGAT GAAGAC GAAGAC GAAGAC GAAGAC GAA
1 GAAGAC GAAGAC GAAGAC GAAGAC GAAGAC GAA
103089893 AGGAACTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.52, C:0.12, G:0.33, T:0.03
Consensus pattern (6 bp):
GAAGAC
Found at i:103090676 original size:30 final size:30
Alignment explanation
Indices: 103090620--103090676 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
103090610 TTAAGCTCGC
* **
103090620 TTATATTATTTTTATTTTTTAAAATTTATA
1 TTATATTATTTTTAGTAATTAAAATTTATA
103090650 TTATATTA-TTTTAGTAATTAATAATTT
1 TTATATTATTTTTAGTAATTAA-AATTT
103090677 TATGCAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 10 0.43
30 13 0.57
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (30 bp):
TTATATTATTTTTAGTAATTAAAATTTATA
Found at i:103095866 original size:5 final size:5
Alignment explanation
Indices: 103095856--103095888 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
103095846 ATCAGTCCCT
103095856 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
103095889 GGCAGTAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:103098985 original size:25 final size:26
Alignment explanation
Indices: 103098957--103099029 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 26
103098947 TATTCAAGCA
* *
103098957 AAATGGATGAAATTTTTAACGGAA-G
1 AAATGGATGGAATTTTTAACGAAAGG
* *
103098982 AAATTGATGGAATTTTTAATAGAAAGTG
1 AAATGGATGGAATTTTTAA-CGAAAG-G
103099010 AAATGGATGGAATTTTTAAC
1 AAATGGATGGAATTTTTAAC
103099030 ATGGAGGAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 17 0.44
26 3 0.08
28 19 0.49
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (26 bp):
AAATGGATGGAATTTTTAACGAAAGG
Found at i:103104607 original size:43 final size:43
Alignment explanation
Indices: 103104549--103104655 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
103104539 GTTTATTTGA
* * *
103104549 AAAAATGCCACTAAAGATCATGACCTTTAGCGGCGCTTTTTTC
1 AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCTC
* *
103104592 ACAAACGCCGCTAAAGATTATGACCTTTAGCGGCGCTTTTCTC
1 AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCTC
103104635 AAAAACGCCGCT-AAG-TCATGA
1 AAAAACGCCGCTAAAGATCATGA
103104656 AATTCAAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 5 0.09
42 3 0.05
43 49 0.86
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCTC
Found at i:103104927 original size:31 final size:32
Alignment explanation
Indices: 103104853--103104938 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 32
103104843 TCAAGTTATC
*
103104853 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATATAAAAATAAAAATAAAAATTTAGAA
* *
103104885 TCAAA-ACAAAAATAAATAATAAAAA-TTAG-A
1 TTAAATATAAAAATAAA-AATAAAAATTTAGAA
**
103104915 TTAAATATAAAAATATCAATAAAA
1 TTAAATATAAAAATAAAAATAAAA
103104939 TAAGATATTA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
30 12 0.27
31 21 0.47
32 12 0.27
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.27
Consensus pattern (32 bp):
TTAAATATAAAAATAAAAATAAAAATTTAGAA
Found at i:103114638 original size:15 final size:17
Alignment explanation
Indices: 103114603--103114636 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
103114593 AGAATATTTA
103114603 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
103114620 ATTTTGTTAAATTATAT
1 ATTTTATTAAATTATAT
103114637 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:103114703 original size:61 final size:60
Alignment explanation
Indices: 103114633--103114810 Score: 170
Period size: 61 Copynumber: 3.0 Consensus size: 60
103114623 TTGTTAAATT
*
103114633 ATATTTAATAATAATAATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAATA
1 ATATTTAATAATAATAATTTTATA-TATTATATATTATGATTTTAATAAATTCATATAATA
* * * * *
103114694 ATATTTAATACTAAGAATTTTATTAAATTATATATT-T--TTGTTAAATTATATTTA-ATAATA
1 ATATTTAATAATAATAATTTTA-TATATTATATATTATGATT-TT-AA-TAAATTCATATAATA
* * *
103114754 ATTATTTTA-AATTAT-ATTTTATAATATTATATATTATAATTTTAATAAATTCATATA
1 A-TATTTAATAATAATAATTTTAT-ATATTATATATTATGATTTTAATAAATTCATATA
103114811 TTTTATCAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 21
0.73 0.10 0.16
Matches are distributed among these distances:
58 3 0.03
59 25 0.27
60 18 0.19
61 44 0.47
62 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (60 bp):
ATATTTAATAATAATAATTTTATATATTATATATTATGATTTTAATAAATTCATATAATA
Found at i:103114763 original size:26 final size:25
Alignment explanation
Indices: 103114725--103114783 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
103114715 ATTAAATTAT
*
103114725 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
103114751 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
103114777 ATATTAT
1 ATATTAT
103114784 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:103114782 original size:15 final size:15
Alignment explanation
Indices: 103114738--103114793 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
103114728 TTTTTGTTAA
*
103114738 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
103114753 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
103114764 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
103114779 ATTATATATTATAAT
1 ATTATATTTTATAAT
103114794 TTTAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:103114809 original size:24 final size:22
Alignment explanation
Indices: 103114764--103114832 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
103114754 ATTATTTTAA
103114764 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
103114786 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
103114805 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
103114827 ATTATA
1 ATTATA
103114833 AAAAATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:103114811 original size:41 final size:40
Alignment explanation
Indices: 103114649--103114833 Score: 129
Period size: 41 Copynumber: 4.6 Consensus size: 40
103114639 AATAATAATA
* * *
103114649 ATTTTATAGTATTATATATTATGATTTTAGTAAATTCATAT
1 ATTTTATAATATTATATATTATAATTTTATTAAATT-ATAT
* *
103114690 A----ATAATATT-TAATACTAAGAATTTTATTAAATTATAT
1 ATTTTATAATATTAT-ATA-TTATAATTTTATTAAATTATAT
* *
103114727 ATTTTTGTTAA-ATTATAT-TTAATAATAATTATTTTAAA-T-TAT
1 A-TTTT-ATAATATTATATATT-ATAAT--TT-TATTAAATTATAT
*
103114769 ATTTTATAATATTATATATTATAATTTTAATAAATTCATAT
1 ATTTTATAATATTATATATTATAATTTTATTAAATT-ATAT
103114810 ATTTTATCAA-ATTATATATTATAA
1 ATTTTAT-AATATTATATATTATAA
103114834 AAAATATATT
Statistics
Matches: 113, Mismatches: 12, Indels: 38
0.69 0.07 0.23
Matches are distributed among these distances:
36 1 0.01
37 15 0.13
38 19 0.17
39 3 0.03
40 4 0.04
41 45 0.40
42 13 0.12
43 7 0.06
44 6 0.05
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (40 bp):
ATTTTATAATATTATATATTATAATTTTATTAAATTATAT
Found at i:103114828 original size:17 final size:17
Alignment explanation
Indices: 103114710--103114849 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
103114700 AATACTAAGA
*
103114710 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
103114727 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
103114743 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
103114757 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
103114776 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
103114792 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
103114810 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
*
103114827 ATTATAA-AAA--ATAT
1 ATTTTAATAAATTATAT
103114841 A-TTTAATAA
1 ATTTTAATAA
103114850 TAATTATGTT
Statistics
Matches: 95, Mismatches: 13, Indels: 33
0.67 0.09 0.23
Matches are distributed among these distances:
13 6 0.06
14 13 0.14
15 8 0.08
16 15 0.16
17 24 0.25
18 24 0.25
19 1 0.01
20 4 0.04
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:103115098 original size:16 final size:16
Alignment explanation
Indices: 103115077--103115128 Score: 104
Period size: 16 Copynumber: 3.2 Consensus size: 16
103115067 GATTTGCTAT
103115077 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
103115093 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
103115109 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
103115125 TACA
1 TACA
103115129 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.38, C:0.37, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:103115504 original size:15 final size:15
Alignment explanation
Indices: 103115482--103115517 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
103115472 AATCATAGAC
103115482 CCCT-AACCCATAAT
1 CCCTAAACCCATAAT
103115496 CCCTAAACCCATAAT
1 CCCTAAACCCATAAT
*
103115511 CCATAAA
1 CCCTAAA
103115518 ACTTAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.19
Consensus pattern (15 bp):
CCCTAAACCCATAAT
Found at i:103115868 original size:41 final size:41
Alignment explanation
Indices: 103115804--103115942 Score: 181
Period size: 41 Copynumber: 3.4 Consensus size: 41
103115794 GTTATATGAC
* *
103115804 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCTGT
*
103115845 TTTTAGCGGCGTTATACCAAAAGCGCCGCTAATGCTCCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCTGT
* * * * *
103115886 TTTTAGCGGCGCTTTTAACAAAAAACACTGCTATTGCT-CTGT
1 TTTTAGCGGCG-TTTT-ACCAAAAGCGCCGCTAATGCTCCTGT
103115928 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
103115943 TGGTAAAACG
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
41 53 0.61
42 18 0.21
43 16 0.18
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCTGT
Found at i:103118938 original size:29 final size:29
Alignment explanation
Indices: 103118877--103118944 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 29
103118867 TATTCAAAAG
* *
103118877 TTTTTATTTAAGTTACTGAACTATTCAAG
1 TTTTTATTTAAGTTACTGAACTATTAAAC
* * * *
103118906 TTTTTATTTAAGTTATTGGATTGTTAAAC
1 TTTTTATTTAAGTTACTGAACTATTAAAC
103118935 TTTTT-TTTAA
1 TTTTTATTTAA
103118945 AGTCTAGCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 5 0.15
29 28 0.85
ACGTcount: A:0.28, C:0.06, G:0.10, T:0.56
Consensus pattern (29 bp):
TTTTTATTTAAGTTACTGAACTATTAAAC
Found at i:103123503 original size:24 final size:24
Alignment explanation
Indices: 103123471--103123522 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 24
103123461 TTTTTTATTA
*
103123471 TTTTCATTTTC-CTCTGTTTTTTC
1 TTTTCATTTTCTCTCTGTTTTCTC
103123494 TTTTCTATTTTCTTCTCTGTTTTCTC
1 TTTTC-ATTTTC-TCTCTGTTTTCTC
103123520 TTT
1 TTT
103123523 ATTGGCCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 5 0.20
24 6 0.24
26 14 0.56
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.71
Consensus pattern (24 bp):
TTTTCATTTTCTCTCTGTTTTCTC
Found at i:103130215 original size:2 final size:2
Alignment explanation
Indices: 103130208--103130232 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
103130198 AAGCAAATCC
103130208 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
103130233 ATTGAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.