Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 314 of 316
Found at i:103131943 original size:22 final size:23
Alignment explanation
Indices: 103131896--103131944 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
103131886 TTGTACATTG
*
103131896 ATAT-TATAATGCTATTGCTATT
1 ATATATATAATGCTATTGATATT
*
103131918 -TATATATAATGTTATT-ATATT
1 ATATATATAATGCTATTGATATT
103131939 ATATAT
1 ATATAT
103131945 TCTATTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (23 bp):
ATATATATAATGCTATTGATATT
Found at i:103135397 original size:19 final size:20
Alignment explanation
Indices: 103135373--103135410 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
103135363 AAGGTCAAAT
103135373 AAAACTAAG-AATAAAGCAA
1 AAAACTAAGCAATAAAGCAA
*
103135392 AAAACTACGCAATAAAGCA
1 AAAACTAAGCAATAAAGCA
103135411 TTGACCATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.63, C:0.16, G:0.11, T:0.11
Consensus pattern (20 bp):
AAAACTAAGCAATAAAGCAA
Found at i:103135474 original size:95 final size:95
Alignment explanation
Indices: 103135311--103135500 Score: 326
Period size: 95 Copynumber: 2.0 Consensus size: 95
103135301 TAGAACCAGT
103135311 AAGCATTGACCATTAACACTTATCAGCTCTGTAATAAGACTTTTAAGAGCCAAAGGTCAAATAAA
1 AAGCATTGACCATTAACACTTATCAGCTCTGTAATAAGACTTTTAAGAGCCAAAGGTCAAATAAA
*
103135376 ACTAAGAATAAAGCAAAAAACTACGCAATA
66 ACTAAGAATAAAGCAAAAAACTACACAATA
* ** *
103135406 AAGCATTGACCATTATCACTTATCAGCTCTGTTTTAAGACTTTTAAGAGCCGAAGGTCAAATAAA
1 AAGCATTGACCATTAACACTTATCAGCTCTGTAATAAGACTTTTAAGAGCCAAAGGTCAAATAAA
*
103135471 ACTAAGACTAAAGCAAAAAACTACACAATA
66 ACTAAGAATAAAGCAAAAAACTACACAATA
103135501 GCAACTCTAA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 89 1.00
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (95 bp):
AAGCATTGACCATTAACACTTATCAGCTCTGTAATAAGACTTTTAAGAGCCAAAGGTCAAATAAA
ACTAAGAATAAAGCAAAAAACTACACAATA
Found at i:103135933 original size:160 final size:148
Alignment explanation
Indices: 103135527--103135980 Score: 509
Period size: 148 Copynumber: 3.0 Consensus size: 148
103135517 AGCCAAAGTT
* * *
103135527 TAATTCAACAAATAGCTAACAGTTCACCTAAATATTCAAGAAACAGTACGATTCAGCTTCGAACT
1 TAATTCATCAAATAGCTAACAGTTCACATAAAGATTCAA-AAACAGTACGATTCAGCTTCGAACT
* * * * *
103135592 AGGATCTAAAAACAAGCTAAAGT-TGTCCTCCCTACGTAAATCTTATAAAACTTAGCTCGTAAAC
65 AGAATCTAAAAACAAGCTAAA-TCTGTTCTTCCTACGTAAAGCTCATAAAACTTAGCTCGTAAAC
103135656 TTCAGATCTGTATTTTTTTG
129 TTCAGATCTGTATTTTTTTG
* *
103135676 TAATTCATCAAACAGCT-ACAGTTCACATAAGGATTCAAAAAACAGTACGATTCAGCTTCGAACT
1 TAATTCATCAAATAGCTAACAGTTCACATAAAGATTC-AAAAACAGTACGATTCAGCTTCGAACT
* * *
103135740 ATAATCTAAAACCAAGCTAAAGCTGTTCTTCCTACGCTAGTCATAGGCTCATAGCAAACTTAGCT
65 AGAATCTAAAAACAAGCTAAATCTGTTCTTCCTACG-TA---A-A-GCTCATA--AAACTTAGCT
* *
103135805 CGTAAACTTCAGTTTTGTATTTTTTTTTG
122 CGTAAACTTCAGATCTGTA--TTTTTTTG
* * * *
103135834 TAATTCATCAAATAGATAATAGTTCACGTAAAGATTCAAAAACCGGTATC-ATTCAAGCTTCGAA
1 TAATTCATCAAATAGCTAACAGTTCACATAAAGATTCAAAAA-CAGTA-CGATTC-AGCTTCGAA
* * * *** *
103135898 CTAGAATCTAAAAACAAGTTAAATCTGTTCTTCCTACGTAAATCTTAGCGATCTTAGCTCGTAAA
63 CTAGAATCTAAAAACAAGCTAAATCTGTTCTTCCTACGTAAAGCTCATAAAACTTAGCTCGTAAA
103135963 CTTCAGATCTGTATTTTT
128 CTTCAGATCTGTATTTTT
103135981 AAGCAAAACA
Statistics
Matches: 256, Mismatches: 33, Indels: 31
0.80 0.10 0.10
Matches are distributed among these distances:
148 70 0.27
149 19 0.07
150 5 0.02
152 26 0.10
153 1 0.00
154 8 0.03
155 1 0.00
156 28 0.11
158 28 0.11
159 26 0.10
160 44 0.17
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (148 bp):
TAATTCATCAAATAGCTAACAGTTCACATAAAGATTCAAAAACAGTACGATTCAGCTTCGAACTA
GAATCTAAAAACAAGCTAAATCTGTTCTTCCTACGTAAAGCTCATAAAACTTAGCTCGTAAACTT
CAGATCTGTATTTTTTTG
Found at i:103136935 original size:13 final size:13
Alignment explanation
Indices: 103136917--103136943 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
103136907 AGAATAAAAT
103136917 AATTTTTTTATTA
1 AATTTTTTTATTA
103136930 AATTTTTTTATTA
1 AATTTTTTTATTA
103136943 A
1 A
103136944 TTTGTATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
AATTTTTTTATTA
Found at i:103136945 original size:12 final size:12
Alignment explanation
Indices: 103136916--103136946 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
103136906 AAGAATAAAA
103136916 TAATTTTTTTAT
1 TAATTTTTTTAT
103136928 TAAATTTTTTTAT
1 T-AATTTTTTTAT
103136941 TAATTT
1 TAATTT
103136947 GTATTACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TAATTTTTTTAT
Found at i:103142060 original size:46 final size:46
Alignment explanation
Indices: 103142042--103142244 Score: 214
Period size: 46 Copynumber: 4.3 Consensus size: 46
103142032 TGACAAGTGG
* * *
103142042 AAAGTGATAAGTAATAGCT-TCGCCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTATAG-CTACACTTATCTGATCAAGTGAC
* *
103142088 AAAGTGATAAGTGATAGCT-TCGGCTGCACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
* * *
103142134 AAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
* *
103142186 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
103142232 AAAGTGATAAGTG
1 AAAGTGATAAGTG
103142245 GCTACACTTA
Statistics
Matches: 140, Mismatches: 9, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
46 95 0.68
47 2 0.01
52 43 0.31
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
Found at i:103142145 original size:98 final size:98
Alignment explanation
Indices: 103141976--103142244 Score: 439
Period size: 98 Copynumber: 2.7 Consensus size: 98
103141966 TTTGAGTACT
*
103141976 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
103142041 GAAAGTGATAAGTAATAGCTTCGCCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
** *
103142074 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTGCACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
103142139 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
* *
103142172 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
103142237 GATAAGTG
65 GAAAAGTG
103142245 GCTACACTTA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
98 146 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
Found at i:103142252 original size:37 final size:37
Alignment explanation
Indices: 103142208--103142353 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
103142198 GATAGCTTTA
*
103142208 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
103142245 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
103142282 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
103142319 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
103142354 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:103143683 original size:58 final size:59
Alignment explanation
Indices: 103143606--103143724 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
103143596 CATGTGAACA
103143606 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
103143665 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
103143723 TG
1 TG
103143725 ATTTCGTGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 55 0.92
59 5 0.08
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (59 bp):
TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:103143715 original size:28 final size:28
Alignment explanation
Indices: 103143625--103143715 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
103143615 GTGATTCCGT
103143625 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
103143653 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
103143682 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
103143711 GTAAG
1 GTAAG
103143716 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:103143738 original size:49 final size:49
Alignment explanation
Indices: 103143666--103143808 Score: 223
Period size: 49 Copynumber: 2.9 Consensus size: 49
103143656 AGTGATATGT
* *
103143666 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* * *
103143715 GTGATATGTGATTTCGTGTAAGACCGTAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
103143764 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
103143809 AGAAAACGAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 86 1.00
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:103147010 original size:46 final size:46
Alignment explanation
Indices: 103146992--103147194 Score: 214
Period size: 46 Copynumber: 4.3 Consensus size: 46
103146982 TGACAAGTGG
* * *
103146992 AAAGTGATAAGTAATAGCT-TCGCCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTATAG-CTACACTTATCTGATCAAGTGAC
* *
103147038 AAAGTGATAAGTGATAGCT-TCGGCTGCACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
* * *
103147084 AAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
* *
103147136 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
103147182 AAAGTGATAAGTG
1 AAAGTGATAAGTG
103147195 GCTACACTTA
Statistics
Matches: 140, Mismatches: 9, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
46 95 0.68
47 2 0.01
52 43 0.31
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
Found at i:103147095 original size:98 final size:98
Alignment explanation
Indices: 103146926--103147194 Score: 439
Period size: 98 Copynumber: 2.7 Consensus size: 98
103146916 TTTGAGTACT
*
103146926 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
103146991 GAAAGTGATAAGTAATAGCTTCGCCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
** *
103147024 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTGCACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
103147089 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
* *
103147122 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
103147187 GATAAGTG
65 GAAAAGTG
103147195 GCTACACTTA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
98 146 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
Found at i:103147202 original size:37 final size:37
Alignment explanation
Indices: 103147158--103147303 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
103147148 GATAGCTTTA
*
103147158 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
103147195 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
103147232 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
103147269 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
103147304 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:103148634 original size:58 final size:59
Alignment explanation
Indices: 103148557--103148675 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
103148547 CATGTGAACA
103148557 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
103148616 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
103148674 TG
1 TG
103148676 ATTTCGTGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 55 0.92
59 5 0.08
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (59 bp):
TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:103148666 original size:28 final size:28
Alignment explanation
Indices: 103148576--103148666 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
103148566 GTGATTCCGT
103148576 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
103148604 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
103148633 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
103148662 GTAAG
1 GTAAG
103148667 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:103148689 original size:49 final size:49
Alignment explanation
Indices: 103148617--103148759 Score: 223
Period size: 49 Copynumber: 2.9 Consensus size: 49
103148607 AGTGATATGT
* *
103148617 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* * *
103148666 GTGATATGTGATTTCGTGTAAGACCGTAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
103148715 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
103148760 AGAAAACGAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 86 1.00
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:103151962 original size:52 final size:48
Alignment explanation
Indices: 103151943--103152145 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
103151933 TGACAAGTGG
* *
103151943 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
103151989 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
103152041 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
103152087 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
103152133 AAAGTGATAAGTG
1 AAAGTGATAAGTG
103152146 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:103151997 original size:98 final size:98
Alignment explanation
Indices: 103151877--103152145 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
103151867 TTTGAGTACT
*
103151877 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
103151942 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
103151975 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
103152040 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
103152073 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
103152138 GATAAGTG
65 GAAAAGTG
103152146 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:103152153 original size:37 final size:37
Alignment explanation
Indices: 103152109--103152254 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
103152099 GATAGCTTTA
*
103152109 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
103152146 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
103152183 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
103152220 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
103152255 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:103153583 original size:58 final size:59
Alignment explanation
Indices: 103153506--103153624 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
103153496 CATGTGAACA
103153506 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
103153565 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
103153623 TG
1 TG
103153625 ATTTCGTGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 55 0.92
59 5 0.08
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (59 bp):
TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:103153615 original size:28 final size:28
Alignment explanation
Indices: 103153525--103153615 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
103153515 GTGATTCCGT
103153525 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
103153553 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
103153582 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
103153611 GTAAG
1 GTAAG
103153616 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:103153638 original size:49 final size:49
Alignment explanation
Indices: 103153566--103153708 Score: 223
Period size: 49 Copynumber: 2.9 Consensus size: 49
103153556 AGTGATATGT
* *
103153566 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* * *
103153615 GTGATATGTGATTTCGTGTAAGACCGTAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
103153664 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
103153709 AGAAAACGAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 86 1.00
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:103156909 original size:52 final size:48
Alignment explanation
Indices: 103156890--103157092 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
103156880 TGACAAGTGG
* *
103156890 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
103156936 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
103156988 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
103157034 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
103157080 AAAGTGATAAGTG
1 AAAGTGATAAGTG
103157093 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:103156944 original size:98 final size:98
Alignment explanation
Indices: 103156824--103157092 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
103156814 TTTGAGTACT
*
103156824 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
103156889 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
103156922 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
103156987 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
103157020 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
103157085 GATAAGTG
65 GAAAAGTG
103157093 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:103157100 original size:37 final size:37
Alignment explanation
Indices: 103157056--103157163 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
103157046 GATAGCTTTA
103157056 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
103157093 GCTACACTTATCTGATCAAGAAACAAAGTGAT-AGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
103157129 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
103157164 ATCATACGTA
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
34 7 0.10
35 8 0.12
36 21 0.31
37 31 0.46
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:103161350 original size:19 final size:18
Alignment explanation
Indices: 103161328--103161367 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
103161318 TGAATAAAAC
103161328 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
103161347 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
103161365 TTA
1 TTA
103161368 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:103165373 original size:29 final size:27
Alignment explanation
Indices: 103165317--103165374 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 27
103165307 TTCCCCTACC
* *
103165317 TTCAAATAATAAAAAAAAATCATCTAA
1 TTCAAATAATAAAAAAAAAACATATAA
103165344 TTCAGAATAATAGAAAGAAAAAAC-TATAA
1 TTCA-AATAATA-AAA-AAAAAACATATAA
103165373 TT
1 TT
103165375 TGATCATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 4 0.15
28 7 0.27
29 9 0.35
30 6 0.23
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (27 bp):
TTCAAATAATAAAAAAAAAACATATAA
Found at i:103166633 original size:29 final size:29
Alignment explanation
Indices: 103166601--103166661 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
103166591 AGTTTAATTT
*
103166601 ATGTAATTT-AATTTTATCAATTTTAGTTC
1 ATGTAATTTCAA-TTGATCAATTTTAGTTC
* *
103166630 ATGTATTTTCGAATTGGTCAATTTTAGTTC
1 ATGTAATTTC-AATTGATCAATTTTAGTTC
103166660 AT
1 AT
103166662 ATACTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 8 0.30
30 17 0.63
31 2 0.07
ACGTcount: A:0.28, C:0.08, G:0.11, T:0.52
Consensus pattern (29 bp):
ATGTAATTTCAATTGATCAATTTTAGTTC
Found at i:103170288 original size:27 final size:27
Alignment explanation
Indices: 103170236--103170289 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
103170226 ATTCTGTTGT
* * *
103170236 CATTGTTAGATTATTAATTCACTTCTA
1 CATTGTAAGATTACTAATTCAATTCTA
103170263 CATTGTAAGATT-CTAATTCTAATTCTA
1 CATTGTAAGATTACTAATTC-AATTCTA
103170290 ATTAATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.31, C:0.15, G:0.07, T:0.46
Consensus pattern (27 bp):
CATTGTAAGATTACTAATTCAATTCTA
Found at i:103170472 original size:21 final size:22
Alignment explanation
Indices: 103170447--103170487 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
103170437 TAGGGACCTG
103170447 AATTTAATTATA-AT-ATTTCTA
1 AATTT-ATTATATATAATTTCTA
103170468 AATTTATTATATATAATTTC
1 AATTTATTATATATAATTTC
103170488 ATCATTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 7 0.39
22 5 0.28
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (22 bp):
AATTTATTATATATAATTTCTA
Found at i:103181054 original size:93 final size:93
Alignment explanation
Indices: 103180895--103181080 Score: 372
Period size: 93 Copynumber: 2.0 Consensus size: 93
103180885 CAAGTTGGGA
103180895 AGTCATATTTTACTTTCTTATTTTATAATTCATTGAAGATTACATTGGAAATATATTAGGTACAT
1 AGTCATATTTTACTTTCTTATTTTATAATTCATTGAAGATTACATTGGAAATATATTAGGTACAT
103180960 CACCTTTTTGTGTATCAAATTTGAGGCT
66 CACCTTTTTGTGTATCAAATTTGAGGCT
103180988 AGTCATATTTTACTTTCTTATTTTATAATTCATTGAAGATTACATTGGAAATATATTAGGTACAT
1 AGTCATATTTTACTTTCTTATTTTATAATTCATTGAAGATTACATTGGAAATATATTAGGTACAT
103181053 CACCTTTTTGTGTATCAAATTTGAGGCT
66 CACCTTTTTGTGTATCAAATTTGAGGCT
103181081 TACATTCCAA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (93 bp):
AGTCATATTTTACTTTCTTATTTTATAATTCATTGAAGATTACATTGGAAATATATTAGGTACAT
CACCTTTTTGTGTATCAAATTTGAGGCT
Found at i:103186192 original size:16 final size:15
Alignment explanation
Indices: 103186152--103186193 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
103186142 GCTTGAGTGT
103186152 CAAATCTG-AATGAC
1 CAAATCTGAAATGAC
* *
103186166 AAAACCTGAAATGACC
1 CAAATCTGAAATGA-C
103186182 CAAATCTGAAAT
1 CAAATCTGAAAT
103186194 TATCCGACCT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 6 0.27
15 5 0.23
16 11 0.50
ACGTcount: A:0.48, C:0.21, G:0.12, T:0.19
Consensus pattern (15 bp):
CAAATCTGAAATGAC
Found at i:103191318 original size:144 final size:146
Alignment explanation
Indices: 103191089--103191372 Score: 461
Period size: 144 Copynumber: 2.0 Consensus size: 146
103191079 AATATTAAAA
103191089 TTTGAAAAGTAAAGGGACTAATAGCTAAAATTAACCAAACATTTAAAGAACAAAAAATTCAGTGT
1 TTTGAAAAGTAAAGGGA-TAATAGCTAAAATTAACCAAACATTTAAAGAACAAAAAATTCAGTGT
103191154 GGCTGCTGGGATTCGAGCCCAGGTCTCCACGGCCACAACGTGGAATTCTTACCACTAAACTACAG
65 GGCTGCTGGGATTCGAGCCCAGGTCTCCACGGCCACAACGTGGAATTCTTACCACTAAACTACAG
103191219 CCACAACTTGTTAAAGT
130 CCACAACTTGTTAAAGT
* * **
103191236 TTTGAAAAGTAAAGCTG-TAATATCTAAAATTAACCAAAACATATT-AA-AA-AAAAAATT-TTT
1 TTTGAAAAGTAAAG-GGATAATAGCTAAAATTAACC-AAACAT-TTAAAGAACAAAAAATTCAGT
103191296 GTGGCTGCTGGGATTCGAGCCCAGGTCTCCACGGCCACAACGTGGAATTCTTACCACTAAACTAC
63 GTGGCTGCTGGGATTCGAGCCCAGGTCTCCACGGCCACAACGTGGAATTCTTACCACTAAACTAC
103191361 AGCCACAACTTG
128 AGCCACAACTTG
103191373 AGAACCTTAG
Statistics
Matches: 130, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
144 78 0.60
145 8 0.06
146 19 0.15
147 22 0.17
148 3 0.02
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (146 bp):
TTTGAAAAGTAAAGGGATAATAGCTAAAATTAACCAAACATTTAAAGAACAAAAAATTCAGTGTG
GCTGCTGGGATTCGAGCCCAGGTCTCCACGGCCACAACGTGGAATTCTTACCACTAAACTACAGC
CACAACTTGTTAAAGT
Found at i:103203544 original size:113 final size:109
Alignment explanation
Indices: 103203386--103203605 Score: 305
Period size: 113 Copynumber: 2.0 Consensus size: 109
103203376 TTTCTGGCCT
* * * *
103203386 TTTGTTTTGGTATTAAATCTAGCATTTGAGGGTTTAAGTTGTTACTTTTATGTTGTTTCTCGGAA
1 TTTGTTTTGGTATTAAATCTAGCATTTGAAGGTTTAAGGTGTTACTTTTATGCTGTTTCTCGAAA
* *
103203451 GAATTTCGGGTCATTCGAGATTGTTTAGTGTGTGTTTATGTGCC
66 GAATTTCAGGTCATTCGAGATTGTTTAGGGTGTGTTTATGTGCC
* *
103203495 TTTGTTTTGGTTTTGAAATGTAGCATTTGGATTAGGTTTAAGGTGTTACTTTTATGCTGTTTCTC
1 TTTGTTTTGGTATT-AAATCTAGCATTT-GA--AGGTTTAAGGTGTTACTTTTATGCTGTTTCTC
* * *
103203560 GAAAGAATTTCAGGTCATTCGAGTTTGTTTGGGGTGTGTTTTTGTG
62 GAAAGAATTTCAGGTCATTCGAGATTGTTTAGGGTGTGTTTATGTG
103203606 TTACAAAGTT
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
109 13 0.14
110 12 0.12
111 2 0.02
113 69 0.72
ACGTcount: A:0.18, C:0.08, G:0.26, T:0.48
Consensus pattern (109 bp):
TTTGTTTTGGTATTAAATCTAGCATTTGAAGGTTTAAGGTGTTACTTTTATGCTGTTTCTCGAAA
GAATTTCAGGTCATTCGAGATTGTTTAGGGTGTGTTTATGTGCC
Found at i:103203783 original size:156 final size:152
Alignment explanation
Indices: 103203492--103203825 Score: 429
Period size: 156 Copynumber: 2.2 Consensus size: 152
103203482 GTGTTTATGT
** * * *
103203492 GCCTTTGTTTTGGTTTTGAAATGTAGCATTTGGATTAGGTTTAAGGTGTTACTTTTATGCTGTTT
1 GCCTTTGTTTTGGTACTGAAATGTAGCACTTGAATTAGGTTTAAGGTGTTACTTTTATGCTCTTT
* * * **
103203557 CTCGAAAGAATTTCAGGTCATTCGAGTTTGTTTGGGGTGTGTTTTTGTGTTACAAAGTTCAAGTA
66 CTCGAAAGAATTTCAGGTCATTCGAGATTGTTTAGGGTGTGTTTATGCATTACAAAGTTCAAGTA
* *
103203622 TACTTAATTAT-GTTCATTTTCTG
131 CACTTAATTATAG-TCA-TATCTG
*
103203645 GCCTTCTGTTTTGGTACTGAAATGTAGCACTTGAATTAGGGTTTAAGTTGTTACTTTTACT-CTC
1 GCCTT-TGTTTTGGTACTGAAATGTAGCACTTGAATTA-GGTTTAAGGTGTTACTTTTA-TGCTC
* * *
103203709 TTTTTCGAAAGAATTTCAGGGTCATTTGAGATTGTTTAGTGTGTGTTTATGCATTACAAAGTTCA
63 TTTCTCGAAAGAATTTCA-GGTCATTCGAGATTGTTTAGGGTGTGTTTATGCATTACAAAGTTCA
103203774 AGTACACTTAATTATAGTCATATCTG
127 AGTACACTTAATTATAGTCATATCTG
*
103203800 GCCTTTTTATTTTGGTACTGAAATGT
1 GCC--TTTGTTTTGGTACTGAAATGT
103203826 GCATTTTGCT
Statistics
Matches: 157, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
153 5 0.03
154 28 0.18
155 46 0.29
156 75 0.48
157 3 0.02
ACGTcount: A:0.22, C:0.11, G:0.21, T:0.45
Consensus pattern (152 bp):
GCCTTTGTTTTGGTACTGAAATGTAGCACTTGAATTAGGTTTAAGGTGTTACTTTTATGCTCTTT
CTCGAAAGAATTTCAGGTCATTCGAGATTGTTTAGGGTGTGTTTATGCATTACAAAGTTCAAGTA
CACTTAATTATAGTCATATCTG
Found at i:103206198 original size:22 final size:22
Alignment explanation
Indices: 103206168--103206217 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
103206158 CATGCTGGTT
*
103206168 CTTTCTTTTCTC-TTGTTGATAG
1 CTTTTTTTTCTCATTGTTG-TAG
*
103206190 CTTTTTTTTTTCATTTGTTGTAG
1 CTTTTTTTTCTCA-TTGTTGTAG
103206213 CTTTT
1 CTTTT
103206218 GAAATATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
23 8 0.33
24 6 0.25
ACGTcount: A:0.08, C:0.14, G:0.12, T:0.66
Consensus pattern (22 bp):
CTTTTTTTTCTCATTGTTGTAG
Found at i:103217687 original size:13 final size:14
Alignment explanation
Indices: 103217659--103217687 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
103217649 AGTTATTGAG
103217659 ATAAGTTTTGATAT
1 ATAAGTTTTGATAT
103217673 ATAAGTTTT-ATAT
1 ATAAGTTTTGATAT
103217686 AT
1 AT
103217688 TGTTATTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (14 bp):
ATAAGTTTTGATAT
Found at i:103219263 original size:46 final size:46
Alignment explanation
Indices: 103219213--103219309 Score: 185
Period size: 46 Copynumber: 2.1 Consensus size: 46
103219203 AATTGTGTTT
103219213 AATTTTAAACATAAAATTTATTTTTGAGTAGCTTAACTCATCAACA
1 AATTTTAAACATAAAATTTATTTTTGAGTAGCTTAACTCATCAACA
*
103219259 AATTTTAAACATAAAATTTCTTTTTGAGTAGCTTAACTCATCAACA
1 AATTTTAAACATAAAATTTATTTTTGAGTAGCTTAACTCATCAACA
103219305 AATTT
1 AATTT
103219310 AATTGTAATG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (46 bp):
AATTTTAAACATAAAATTTATTTTTGAGTAGCTTAACTCATCAACA
Found at i:103221923 original size:39 final size:39
Alignment explanation
Indices: 103221845--103221926 Score: 119
Period size: 39 Copynumber: 2.1 Consensus size: 39
103221835 AGCTTCAGTT
** *
103221845 CTTCCGTTTAGCACTTATGTGCTTCAGTTAGCCTCCGGG
1 CTTCCGTTTAGCACTTATGTGCTTCAACTAGACTCCGGG
* *
103221884 CTTCCGTTTAGCACTTATGTGCTTCAACTAGATTTCGGG
1 CTTCCGTTTAGCACTTATGTGCTTCAACTAGACTCCGGG
103221923 CTTC
1 CTTC
103221927 AGATCACGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.38
Consensus pattern (39 bp):
CTTCCGTTTAGCACTTATGTGCTTCAACTAGACTCCGGG
Found at i:103222849 original size:14 final size:14
Alignment explanation
Indices: 103222830--103222856 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
103222820 TATCCATAAT
103222830 TTAAAAATACCTTG
1 TTAAAAATACCTTG
103222844 TTAAAAATACCTT
1 TTAAAAATACCTT
103222857 AAGACGTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.37
Consensus pattern (14 bp):
TTAAAAATACCTTG
Found at i:103224904 original size:31 final size:31
Alignment explanation
Indices: 103224836--103224904 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
103224826 TAGTTTTTAA
103224836 CAAGTCCCTTTACTCTTCACCAATTCAAAATT
1 CAAGTCCCTTTACTCTTCA-CAATTCAAAATT
* * *
103224868 -TAGTCCCTTTACTTTTCA-AATTTTAAAATT
1 CAAGTCCCTTTACTCTTCACAA-TTCAAAATT
103224898 CAAGTCC
1 CAAGTCC
103224905 AATTGTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
29 2 0.06
30 8 0.26
31 21 0.68
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.39
Consensus pattern (31 bp):
CAAGTCCCTTTACTCTTCACAATTCAAAATT
Found at i:103226553 original size:13 final size:13
Alignment explanation
Indices: 103226535--103226559 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103226525 TAATGTTGTA
103226535 AATATTAGATTAT
1 AATATTAGATTAT
103226548 AATATTAGATTA
1 AATATTAGATTA
103226560 AATGCTTCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
AATATTAGATTAT
Found at i:103229677 original size:22 final size:22
Alignment explanation
Indices: 103229591--103229692 Score: 73
Period size: 22 Copynumber: 4.6 Consensus size: 22
103229581 AGAGTCTTAC
*
103229591 CAGAGTACGCCAC-CAGAGCTAGA
1 CAGAATACGCCACACAG-GCTA-A
* * *
103229614 CATATTACGCCACAAAGGCT-A
1 CAGAATACGCCACACAGGCTAA
*** * *
103229635 CAGAATACATTATACAAGCTAA
1 CAGAATACGCCACACAGGCTAA
103229657 CAGAATACGCCACACAGGCTAA
1 CAGAATACGCCACACAGGCTAA
* *
103229679 AAGAATATGCCACA
1 CAGAATACGCCACA
103229693 AGAGCTAGAT
Statistics
Matches: 59, Mismatches: 18, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
21 13 0.22
22 30 0.51
23 14 0.24
24 2 0.03
ACGTcount: A:0.42, C:0.26, G:0.17, T:0.15
Consensus pattern (22 bp):
CAGAATACGCCACACAGGCTAA
Found at i:103229699 original size:22 final size:23
Alignment explanation
Indices: 103229651--103229699 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
103229641 ACATTATACA
*
103229651 AGCTAACAGAATACGCCACACAG
1 AGCTAAAAGAATACGCCACACAG
*
103229674 -GCTAAAAGAATATGCCACA-AG
1 AGCTAAAAGAATACGCCACACAG
103229695 AGCTA
1 AGCTA
103229700 GATCAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.45, C:0.24, G:0.18, T:0.12
Consensus pattern (23 bp):
AGCTAAAAGAATACGCCACACAG
Found at i:103230865 original size:46 final size:46
Alignment explanation
Indices: 103230737--103230872 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
103230727 TTTGACATGA
* * * * *
103230737 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACAATGGTCTTACTCA-TTTCATATCACGT
**
103230783 TGCCATGGTATCTTTCAACAATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACAATGGTCTTACTCATTTCATATCACGT
* * *
103230829 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAC
1 TGCCATGGTATCTTTCAACAATGGTCTTACTCATTTCATATCAC
103230873 TTTCAACCAT
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 4 0.05
46 73 0.95
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACAATGGTCTTACTCATTTCATATCACGT
Found at i:103230881 original size:32 final size:32
Alignment explanation
Indices: 103230840--103230903 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
103230830 GCCATGGTAT
103230840 CTTTCAACCATGGTCTTACACATTTCACATCA
1 CTTTCAACCATGGTCTTACACATTTCACATCA
*
103230872 CTTTCAACCATGGTCTTACACATTTCATATCA
1 CTTTCAACCATGGTCTTACACATTTCACATCA
103230904 GGTTGCCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.30, G:0.06, T:0.36
Consensus pattern (32 bp):
CTTTCAACCATGGTCTTACACATTTCACATCA
Found at i:103230923 original size:78 final size:78
Alignment explanation
Indices: 103230794--103230949 Score: 258
Period size: 78 Copynumber: 2.0 Consensus size: 78
103230784 GCCATGGTAT
***
103230794 CTTTCAACAATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACAATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
103230859 ACATTTCACATCA
66 ACATTTCACATCA
* *
103230872 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACAATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
*
103230937 ACATTTCATATCA
66 ACATTTCACATCA
103230950 GACTGCCATG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.38
Consensus pattern (78 bp):
CTTTCAACAATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
ACATTTCACATCA
Found at i:103230924 original size:46 final size:46
Alignment explanation
Indices: 103230872--103231087 Score: 387
Period size: 46 Copynumber: 4.7 Consensus size: 46
103230862 TTTCACATCA
*
103230872 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
*
103230918 CTTTCAACCATGGTCTTACACATTTCATATCAGACTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
*
103230964 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
* *
103231010 CTTTCAACCATGGTCTTACACATTTCATATTAGGCTGCCATGGCAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
103231056 CTTTCAACCATGGTCTTACACATTTCATATCA
1 CTTTCAACCATGGTCTTACACATTTCATATCA
103231088 AAGAGCACAC
Statistics
Matches: 162, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 162 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (46 bp):
CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
Found at i:103230968 original size:124 final size:130
Alignment explanation
Indices: 103230747--103231087 Score: 428
Period size: 124 Copynumber: 2.6 Consensus size: 130
103230737 TGCCATAGTG
* * * * *
103230747 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACAATGGTCTT
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTT
*** *
103230811 GTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-A-CA-T-C-
65 ACACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAATCAGTCCG
103230871 A
130 A
103230872 -CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
103230936 CACATTTCATATCA-GACTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTT
66 CACATTTCATATCACG-CTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA-ATCA-G-T
103231000 GCCATGGTA
127 -CC---G-A
* * *
103231009 TCTTTCAACCATGGTCTTACACATTTCATATTAGGCTGCCATGGCATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
103231074 CACATTTCATATCA
66 CACATTTCATATCA
103231088 AAGAGCACAC
Statistics
Matches: 188, Mismatches: 12, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
123 5 0.03
124 102 0.54
126 1 0.01
127 2 0.01
130 1 0.01
132 1 0.01
137 1 0.01
138 75 0.40
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (130 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAATCAGTCCGA
Found at i:103236796 original size:24 final size:24
Alignment explanation
Indices: 103236764--103236814 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
103236754 TAATATAAAG
103236764 ACAAATGTATAG-TAAATAAAATAT
1 ACAAATGTATAGATAAA-AAAATAT
* * *
103236788 ACAAGTGTATGGATAAAAATATAT
1 ACAAATGTATAGATAAAAAAATAT
103236812 ACA
1 ACA
103236815 TTTGTAATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (24 bp):
ACAAATGTATAGATAAAAAAATAT
Found at i:103239014 original size:54 final size:54
Alignment explanation
Indices: 103238942--103239077 Score: 256
Period size: 54 Copynumber: 2.5 Consensus size: 54
103238932 ATTGTCGTTG
103238942 CAGGGGA-TTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
103238995 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
*
103239049 CAGGGGATTTAGCCTGGACTAGTAATCCC
1 CAGGGGATTTAGCCTGGACTGGTAATCCC
103239078 ACTGTAAGGA
Statistics
Matches: 81, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
53 7 0.09
54 74 0.91
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:103239180 original size:46 final size:46
Alignment explanation
Indices: 103239111--103239384 Score: 406
Period size: 46 Copynumber: 6.0 Consensus size: 46
103239101 AGTGTGCTCT
*
103239111 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
103239157 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
103239203 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
103239249 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
103239295 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
103239341 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
103239385 TCATGTCAAA
Statistics
Matches: 213, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 212 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:103244376 original size:23 final size:23
Alignment explanation
Indices: 103244346--103244397 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
103244336 TGCAACTTGG
103244346 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
103244369 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
103244392 TTTCAT
1 TTTCAT
103244398 CTTTTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:103248635 original size:23 final size:23
Alignment explanation
Indices: 103248605--103248656 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
103248595 TGCAACTTGG
103248605 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
103248628 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
103248651 TTTCAT
1 TTTCAT
103248657 CTTTTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:103249434 original size:23 final size:23
Alignment explanation
Indices: 103249408--103249453 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
103249398 TAACTCTTTG
103249408 TTGTATTGATATCTCTCATTATT
1 TTGTATTGATATCTCTCATTATT
103249431 TTGTATTGATATCTCTCATTATT
1 TTGTATTGATATCTCTCATTATT
103249454 GATACTAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.57
Consensus pattern (23 bp):
TTGTATTGATATCTCTCATTATT
Found at i:103258170 original size:22 final size:22
Alignment explanation
Indices: 103258145--103258186 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
103258135 AATTATTCTT
*
103258145 TTTTTTCACAATTTTGTTGTTG
1 TTTTCTCACAATTTTGTTGTTG
**
103258167 TTTTCTCACTGTTTTGTTGT
1 TTTTCTCACAATTTTGTTGT
103258187 CATTATGTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.10, C:0.12, G:0.14, T:0.64
Consensus pattern (22 bp):
TTTTCTCACAATTTTGTTGTTG
Found at i:103258618 original size:23 final size:23
Alignment explanation
Indices: 103258581--103258640 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
103258571 ATATTTTTAA
103258581 ATTTATTTTCAAATAGTTTGGAAAT
1 ATTTATTTT--AATAGTTTGGAAAT
* * *
103258606 ATTTATTTTAATATTTTTGATAT
1 ATTTATTTTAATAGTTTGGAAAT
103258629 ATTATATTTTAA
1 ATT-TATTTTAA
103258641 AATTCTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 14 0.45
24 8 0.26
25 9 0.29
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
ATTTATTTTAATAGTTTGGAAAT
Found at i:103258636 original size:24 final size:23
Alignment explanation
Indices: 103258604--103258653 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
103258594 TAGTTTGGAA
*
103258604 ATATTTATTTTAATATT-TTTGAT
1 ATATTTATTTTAAAATTCTTT-AT
103258627 ATATTATATTTTAAAATTCTTTAT
1 ATATT-TATTTTAAAATTCTTTAT
103258651 ATA
1 ATA
103258654 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 5 0.21
24 16 0.67
25 3 0.12
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
ATATTTATTTTAAAATTCTTTAT
Found at i:103267775 original size:113 final size:113
Alignment explanation
Indices: 103267574--103267791 Score: 282
Period size: 113 Copynumber: 1.9 Consensus size: 113
103267564 TTTGAAGAAC
* * *
103267574 GAAAACGCGGGAGAGTTTTGAATTTTTTTGTTTTGTTTGATGGGTTTAAACCTTCATCTAATCCC
1 GAAAACGCGGGAGAGCTTTGAA--TTTTTGTTTTGTTTGATAGGTTCAAACCTTCATCTAATCCC
* * *
103267639 TTTGGTTTTTTAATATTTAAAATTTAGTTCCTCTATTTTTAATATGGAGGAAA
64 TGTGATTTTTTAATATTTAAAATTCAG-TCCT-T-TTTTTAATATGGAGGAAA
*
103267692 GAAAACGCGGGAGAGCTTTGAA-TTTT-TTTTGTTT-ATAGG-TCAAACTCTTCTTCTAATCCCT
1 GAAAACGCGGGAGAGCTTTGAATTTTTGTTTTGTTTGATAGGTTCAAAC-CTTCATCTAATCCCT
*
103267753 GTGATTTTTTAGTATTTAAAATTCAGTCCTTTTTTTAAT
65 GTGATTTTTTAATATTTAAAATTCAGTCCTTTTTTTAAT
103267792 CTCATGAATT
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
110 8 0.09
111 1 0.01
112 9 0.10
113 40 0.44
114 8 0.09
115 4 0.04
118 21 0.23
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.46
Consensus pattern (113 bp):
GAAAACGCGGGAGAGCTTTGAATTTTTGTTTTGTTTGATAGGTTCAAACCTTCATCTAATCCCTG
TGATTTTTTAATATTTAAAATTCAGTCCTTTTTTTAATATGGAGGAAA
Found at i:103268863 original size:14 final size:14
Alignment explanation
Indices: 103268846--103268883 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
103268836 AATATAATTT
103268846 TAAAAATTAA-AATA
1 TAAAAATTAATAA-A
103268860 TAAAAA-TAATAAA
1 TAAAAATTAATAAA
103268873 TAAAAATTAAT
1 TAAAAATTAAT
103268884 TTAAAAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TAAAAATTAATAAA
Found at i:103269332 original size:21 final size:21
Alignment explanation
Indices: 103269281--103269332 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
103269271 TATATATAAG
* *
103269281 AATAAAATAATAATTTCATAT
1 AATAAAACAGTAATTTCATAT
103269302 AATAAAACAGTAATTTCATAT
1 AATAAAACAGTAATTTCATAT
103269323 AATAAAACAG
1 AATAAAACAG
103269333 GATGGAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.31
Consensus pattern (21 bp):
AATAAAACAGTAATTTCATAT
Found at i:103273745 original size:16 final size:16
Alignment explanation
Indices: 103273719--103273794 Score: 89
Period size: 16 Copynumber: 4.8 Consensus size: 16
103273709 AAACAATACT
*
103273719 TAGAACTGTAATGGAA
1 TAGAGCTGTAATGGAA
* **
103273735 TAGGGCTGTAATTTAA
1 TAGAGCTGTAATGGAA
* *
103273751 TAGAGTTGTAATAGAA
1 TAGAGCTGTAATGGAA
103273767 TAGAGCTGTAATGGAA
1 TAGAGCTGTAATGGAA
*
103273783 TAGAACTGTAAT
1 TAGAGCTGTAAT
103273795 AAGTAATTCA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (16 bp):
TAGAGCTGTAATGGAA
Found at i:103273785 original size:32 final size:32
Alignment explanation
Indices: 103273719--103273795 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
103273709 AAACAATACT
* * **
103273719 TAGAACTGTAATGGAATAGGGCTGTAATTTAA
1 TAGAACTGTAATAGAATAGAGCTGTAATGGAA
**
103273751 TAGAGTTGTAATAGAATAGAGCTGTAATGGAA
1 TAGAACTGTAATAGAATAGAGCTGTAATGGAA
103273783 TAGAACTGTAATA
1 TAGAACTGTAATA
103273796 AGTAATTCAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (32 bp):
TAGAACTGTAATAGAATAGAGCTGTAATGGAA
Found at i:103273833 original size:46 final size:44
Alignment explanation
Indices: 103273776--103273868 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
103273766 ATAGAGCTGT
*
103273776 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCAACTGTTTGGTTGAAAGG
***
103273822 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAAAGG
1 AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAAAGG
103273866 AAT
1 AAT
103273869 AATGATGTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 21 0.49
45 3 0.07
46 19 0.44
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAAAGG
Found at i:103274059 original size:16 final size:16
Alignment explanation
Indices: 103274040--103274071 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
103274030 AATTATTATT
103274040 AAATATAATTTAATAA
1 AAATATAATTTAATAA
103274056 AAATATAATTTAATAA
1 AAATATAATTTAATAA
103274072 CATTCATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATAATTTAATAA
Found at i:103274597 original size:18 final size:18
Alignment explanation
Indices: 103274574--103274608 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
103274564 ACGTGGTAGT
*
103274574 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
103274592 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
103274609 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:103274667 original size:40 final size:40
Alignment explanation
Indices: 103274612--103274900 Score: 452
Period size: 40 Copynumber: 7.2 Consensus size: 40
103274602 CTTAAGTATA
* * *
103274612 TCTGTTAATACATACTTCATCCGGGTAAATTATACAATTT
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
103274652 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
* * * *
103274692 TCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
103274732 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
103274772 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
*
103274812 TCTGTTAATACATACTTTACCTGGGTAAATTATACAGTTT
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
* * * * *
103274852 TCTATTAATATATACTTCATCCGGATAAATTATACAGTTT
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
*
103274892 TCTATTAAT
1 TCTGTTAAT
103274901 GTGCTTGTGA
Statistics
Matches: 231, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 231 1.00
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (40 bp):
TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
Found at i:103281598 original size:25 final size:25
Alignment explanation
Indices: 103281564--103281613 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
103281554 GTTGTAGTCG
103281564 CCTAATAGTCAAGGTGTTTCAGTTT
1 CCTAATAGTCAAGGTGTTTCAGTTT
103281589 CCTAATAGTCAAGGTGTTTCAGTTT
1 CCTAATAGTCAAGGTGTTTCAGTTT
103281614 ACTTTCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (25 bp):
CCTAATAGTCAAGGTGTTTCAGTTT
Found at i:103285613 original size:15 final size:14
Alignment explanation
Indices: 103285595--103285625 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
103285585 TTAATTTATT
103285595 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
103285610 TAATAATAATCTAA
1 TAATAATAATCTAA
103285624 TA
1 TA
103285626 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:103285636 original size:21 final size:20
Alignment explanation
Indices: 103285612--103285680 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
103285602 AATGCTAATA
103285612 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
103285633 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
103285652 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
103285673 ATAATAAT
1 ATAATAAT
103285681 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:103292917 original size:31 final size:29
Alignment explanation
Indices: 103292871--103292930 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
103292861 TTTTTAATTT
103292871 AACTCGAACAATTTCACTTGATTCGACTC
1 AACTCGAACAATTTCACTTGATTCGACTC
* *
103292900 AACTCGACACAAATTTCATTTTATTCGACTC
1 AACTCGA-AC-AATTTCACTTGATTCGACTC
103292931 GATTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 7 0.26
30 2 0.07
31 18 0.67
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (29 bp):
AACTCGAACAATTTCACTTGATTCGACTC
Found at i:103300587 original size:7 final size:7
Alignment explanation
Indices: 103300575--103300604 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
103300565 TAGGACTCAA
103300575 AAATATC
1 AAATATC
103300582 AAATATC
1 AAATATC
103300589 AAATATC
1 AAATATC
103300596 AAATATC
1 AAATATC
103300603 AA
1 AA
103300605 GAACAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATATC
Found at i:103307020 original size:9 final size:9
Alignment explanation
Indices: 103307006--103307030 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
103306996 CTTGGGTCAG
103307006 AACCTCTTC
1 AACCTCTTC
103307015 AACCTCTTC
1 AACCTCTTC
103307024 AACCTCT
1 AACCTCT
103307031 AATTCCTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.32
Consensus pattern (9 bp):
AACCTCTTC
Found at i:103307116 original size:21 final size:21
Alignment explanation
Indices: 103307092--103307132 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
103307082 ATTTGCTCAA
* *
103307092 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
103307113 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
103307133 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:103316913 original size:25 final size:25
Alignment explanation
Indices: 103316868--103316939 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 25
103316858 TCACTTCTCG
103316868 CTAAGCTTGCAGCTTTG-ACATCTTA
1 CTAAGCTTGCAGC-TTGCACATCTTA
* *
103316893 CTAAGCTTGCAGCTTGCACATTTTTG
1 CTAAGCTTGCAGCTTGCACA-TCTTA
* *
103316919 CTGAGCCTGCAGCTTGCACAT
1 CTAAGCTTGCAGCTTGCACAT
103316940 TGGAAAGCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.07
25 17 0.41
26 21 0.51
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33
Consensus pattern (25 bp):
CTAAGCTTGCAGCTTGCACATCTTA
Found at i:103328157 original size:24 final size:24
Alignment explanation
Indices: 103328125--103328174 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
103328115 AGTAACGATG
103328125 TATGTGCATGAATATGGAACTAAT
1 TATGTGCATGAATATGGAACTAAT
103328149 TATGTGCATGAATATGGAACTAAT
1 TATGTGCATGAATATGGAACTAAT
103328173 TA
1 TA
103328175 CACAGACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (24 bp):
TATGTGCATGAATATGGAACTAAT
Found at i:103330390 original size:11 final size:11
Alignment explanation
Indices: 103330374--103330398 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
103330364 TATAATTACG
103330374 TAAAATTAAAT
1 TAAAATTAAAT
103330385 TAAAATTAAAT
1 TAAAATTAAAT
103330396 TAA
1 TAA
103330399 TAGATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAAAATTAAAT
Found at i:103339191 original size:55 final size:55
Alignment explanation
Indices: 103339132--103339242 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
103339122 ATTCGGATTC
103339132 GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
1 GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
103339187 GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
1 GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
103339242 G
1 G
103339243 CTAAACGCCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (55 bp):
GGATCTACTCTCAACATTCATCTAATTAACTTATGTTATATTGTTGTAGGGAAAA
Found at i:103349733 original size:9 final size:9
Alignment explanation
Indices: 103349719--103349752 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
103349709 TTAAATAATT
103349719 ATTTTAAAA
1 ATTTTAAAA
103349728 ATTTTAAAA
1 ATTTTAAAA
*
103349737 A-TTAAAAA
1 ATTTTAAAA
103349745 ATTTTAAA
1 ATTTTAAA
103349753 TATTAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:103349746 original size:17 final size:17
Alignment explanation
Indices: 103349724--103349759 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
103349714 TAATTATTTT
103349724 AAAAATTTTAAAAATTA
1 AAAAATTTTAAAAATTA
*
103349741 AAAAATTTTAAATATTA
1 AAAAATTTTAAAAATTA
103349758 AA
1 AA
103349760 TTGGTGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAAATTTTAAAAATTA
Found at i:103350951 original size:100 final size:101
Alignment explanation
Indices: 103350777--103350981 Score: 349
Period size: 100 Copynumber: 2.0 Consensus size: 101
103350767 GTTAGGTAGA
* * *
103350777 ATTTTGCTTTTAATTTGATGAATTTATTTTACTCTGAGTGAGCTAGCGGTTGTATTTGTGATGAT
1 ATTTTGCGTTTAATTTAATGAATTTATTTTACTCGGAGTGAGCTAGCGGTTGTATTTGTGATGAT
* *
103350842 ATATTGTTAATTGATTAGAGATTAGTATTTGTTATG
66 ATAGTGTTAATTGATTACAGATTAGTATTTGTTATG
*
103350878 ATTTTGCGTTTAATTTAATGAATTTA-TTTACTCGGAGTGAGCTAGCTGTTGTATTTGTGATGAT
1 ATTTTGCGTTTAATTTAATGAATTTATTTTACTCGGAGTGAGCTAGCGGTTGTATTTGTGATGAT
103350942 ATAGTGTTAATTGATTACAGATTAGTATTTGTTATG
66 ATAGTGTTAATTGATTACAGATTAGTATTTGTTATG
103350978 ATTT
1 ATTT
103350982 AGTATTGATG
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
100 74 0.76
101 24 0.24
ACGTcount: A:0.25, C:0.05, G:0.20, T:0.49
Consensus pattern (101 bp):
ATTTTGCGTTTAATTTAATGAATTTATTTTACTCGGAGTGAGCTAGCGGTTGTATTTGTGATGAT
ATAGTGTTAATTGATTACAGATTAGTATTTGTTATG
Found at i:103359032 original size:23 final size:23
Alignment explanation
Indices: 103359006--103359062 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
103358996 AGGTGATTAT
103359006 ATATAAAATTATAATAAATTAAA
1 ATATAAAATTATAATAAATTAAA
*
103359029 ATATATAAATT-TATTAAATTAAA
1 ATATA-AAATTATAATAAATTAAA
103359052 ATA-AATAATTA
1 ATATAA-AATTA
103359063 AATTTACATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.03
22 5 0.17
23 19 0.63
24 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
ATATAAAATTATAATAAATTAAA
Found at i:103360040 original size:19 final size:19
Alignment explanation
Indices: 103360008--103360075 Score: 55
Period size: 21 Copynumber: 3.3 Consensus size: 19
103359998 TTGAGTTAAT
103360008 TTTTTTAGATAATTATGTTTA
1 TTTTTTA-A-AATTATGTTTA
* *
103360029 TTTTTTAAAATTAAGAGTTA
1 TTTTTTAAAATTATG-TTTA
**
103360049 TTTTTTTAATTTTATGTATTA
1 -TTTTTTAAAATTATGT-TTA
103360070 TTTTTT
1 TTTTTT
103360076 CATTTAATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
19 6 0.16
20 10 0.26
21 22 0.58
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (19 bp):
TTTTTTAAAATTATGTTTA
Found at i:103360087 original size:19 final size:20
Alignment explanation
Indices: 103360050--103360087 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
103360040 TAAGAGTTAT
*
103360050 TTTTTTAATTTTATGTATTA
1 TTTTTTAATTTAATGTATTA
*
103360070 TTTTTTCATTTAAT-TATT
1 TTTTTTAATTTAATGTATT
103360088 TTCACATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTTTTAATTTAATGTATTA
Found at i:103364015 original size:21 final size:21
Alignment explanation
Indices: 103363991--103364038 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
103363981 CCAAGAAGCT
103363991 CTTGGTTCATCAAATGAAAAC
1 CTTGGTTCATCAAATGAAAAC
**
103364012 CTTGAATCATCAAATGAAAAC
1 CTTGGTTCATCAAATGAAAAC
103364033 CTTGGT
1 CTTGGT
103364039 GGAGCTATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.29
Consensus pattern (21 bp):
CTTGGTTCATCAAATGAAAAC
Found at i:103364853 original size:25 final size:24
Alignment explanation
Indices: 103364822--103364880 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 24
103364812 TATATGGAAA
103364822 AAAAAATTAAATTTATTAAACTATT
1 AAAAAATTAAATTTATTAAA-TATT
* * *
103364847 AATAAATTTACATTTATTAAATTTT
1 AA-AAAATTAAATTTATTAAATATT
103364872 AAAAAATTA
1 AAAAAATTA
103364881 TAAAATAGTC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 6 0.21
25 7 0.24
26 16 0.55
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.42
Consensus pattern (24 bp):
AAAAAATTAAATTTATTAAATATT
Found at i:103364977 original size:99 final size:100
Alignment explanation
Indices: 103364863--103365059 Score: 351
Period size: 100 Copynumber: 2.0 Consensus size: 100
103364853 TTTACATTTA
* *
103364863 TTAAATTTTAAAAAATTATAAAATAGTCACTAAATTATCTGAAA-ATTTTATTTAAGTCATTGGG
1 TTAAATTTTAAAAAATTACAAAATAATCACTAAATTATCTGAAAGATTTTATTTAAGTCATTGGG
*
103364927 TTATTAAGTTTTTATTTAAGCAACGGTTCATATGG
66 TTATCAAGTTTTTATTTAAGCAACGGTTCATATGG
*
103364962 TTAAATTTTAAAAAATTACAAAATAATCACTAAATTATCTGAAAGATTTTATTTAATTCATTGGG
1 TTAAATTTTAAAAAATTACAAAATAATCACTAAATTATCTGAAAGATTTTATTTAAGTCATTGGG
103365027 TTATCAAGTTTTTATTTAAGCAACGGTTCATAT
66 TTATCAAGTTTTTATTTAAGCAACGGTTCATAT
103365060 AGTGGGCCAA
Statistics
Matches: 93, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
99 42 0.45
100 51 0.55
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (100 bp):
TTAAATTTTAAAAAATTACAAAATAATCACTAAATTATCTGAAAGATTTTATTTAAGTCATTGGG
TTATCAAGTTTTTATTTAAGCAACGGTTCATATGG
Found at i:103365789 original size:24 final size:25
Alignment explanation
Indices: 103365743--103365789 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
103365733 TACAATGGCT
*
103365743 AATTTTTAAAAGTAAAGATTAATGA
1 AATTTTTAAAAGTAAAGACTAATGA
* *
103365768 AATTTTTAACAG-AATGACTAAT
1 AATTTTTAAAAGTAAAGACTAAT
103365790 TTGTTTCTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (25 bp):
AATTTTTAAAAGTAAAGACTAATGA
Found at i:103368809 original size:20 final size:19
Alignment explanation
Indices: 103368751--103368811 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 19
103368741 ATAATTCTAA
*
103368751 AAAATTATA-AAAAATCTT
1 AAAATTATATAAAAATATT
* * *
103368769 AAAAATAAATATAAATGATT
1 AAAATTATATAAAAAT-ATT
103368789 AAAATTATATTAAAAATATT
1 AAAATTATA-TAAAAATATT
103368809 AAA
1 AAA
103368812 TCAAAAGCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
18 7 0.21
19 5 0.15
20 15 0.45
21 6 0.18
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATTATATAAAAATATT
Found at i:103371870 original size:10 final size:10
Alignment explanation
Indices: 103371855--103371879 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
103371845 TTTTTTTTAT
103371855 TTTATAATAA
1 TTTATAATAA
103371865 TTTATAATAA
1 TTTATAATAA
103371875 TTTAT
1 TTTAT
103371880 TTAATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTATAATAA
Found at i:103380771 original size:33 final size:33
Alignment explanation
Indices: 103380729--103380794 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
103380719 TTAGATGGTA
103380729 GCTTACACTAATACACATAACGATAAATTATTT
1 GCTTACACTAATACACATAACGATAAATTATTT
*
103380762 GCTTACACTAATACGCATAACGATAAATTATTT
1 GCTTACACTAATACACATAACGATAAATTATTT
103380795 ATGTTTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (33 bp):
GCTTACACTAATACACATAACGATAAATTATTT
Found at i:103385903 original size:15 final size:16
Alignment explanation
Indices: 103385869--103385906 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
103385859 AAAATTTAAT
*
103385869 TAATTAATTTAAACAA
1 TAATAAATTTAAACAA
*
103385885 TAATAAATTTATA-AA
1 TAATAAATTTAAACAA
103385900 TAATAAA
1 TAATAAA
103385907 AGAATCAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATAAATTTAAACAA
Found at i:103386060 original size:12 final size:12
Alignment explanation
Indices: 103386043--103386067 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103386033 ATTTTACTCT
103386043 TTCAACTAAAAA
1 TTCAACTAAAAA
103386055 TTCAACTAAAAA
1 TTCAACTAAAAA
103386067 T
1 T
103386068 ACATGTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (12 bp):
TTCAACTAAAAA
Found at i:103390709 original size:13 final size:13
Alignment explanation
Indices: 103390691--103390715 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103390681 AGTATCGAAT
103390691 TTTTTAATTAATG
1 TTTTTAATTAATG
103390704 TTTTTAATTAAT
1 TTTTTAATTAAT
103390716 AAACATCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:103391616 original size:16 final size:17
Alignment explanation
Indices: 103391585--103391620 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
103391575 TAGGATTTCT
*
103391585 AAATTGAAAAAGAAAAA
1 AAATTGAAAAAAAAAAA
103391602 AAATT-AAAAAAAAAAA
1 AAATTGAAAAAAAAAAA
103391618 AAA
1 AAA
103391621 GCTTTGTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (17 bp):
AAATTGAAAAAAAAAAA
Found at i:103394702 original size:3 final size:3
Alignment explanation
Indices: 103394694--103394755 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
103394684 GATTTAGTCC
103394694 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
103394742 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
103394756 CCTACTTATT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:103395026 original size:24 final size:24
Alignment explanation
Indices: 103394973--103395030 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
103394963 AAATATACTT
*
103394973 TATATATTTT-GTTAATTTATATA
1 TATATATTTTAGTTAATGTATATA
* * *
103394996 TACATATTTTAGTTTATGTCTATA
1 TATATATTTTAGTTAATGTATATA
103395020 TATATATTTTA
1 TATATATTTTA
103395031 TATTTAATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 9 0.31
24 20 0.69
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (24 bp):
TATATATTTTAGTTAATGTATATA
Found at i:103397010 original size:19 final size:20
Alignment explanation
Indices: 103396970--103397013 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
103396960 GTCTCTTTAG
* *
103396970 GCATT-CATTTCATGCATCT
1 GCATTACATTGCATGCATAT
103396989 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
103397008 GCATTA
1 GCATTA
103397014 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:103398130 original size:7 final size:8
Alignment explanation
Indices: 103398109--103398138 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
103398099 TCTCATGAAT
103398109 TCAAAAAA
1 TCAAAAAA
103398117 TCAAAAAA
1 TCAAAAAA
103398125 TCAAAAAAA
1 TC-AAAAAA
103398134 TCAAA
1 TCAAA
103398139 GTCAAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (8 bp):
TCAAAAAA
Found at i:103400434 original size:88 final size:88
Alignment explanation
Indices: 103400285--103401315 Score: 1642
Period size: 88 Copynumber: 11.7 Consensus size: 88
103400275 ATGAAGTTAC
* * * *
103400285 AGATCTTGCCTTCCTGCATTGATAGTGAAGCAGGTCGAGGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
103400350 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
103400373 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
103400438 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
*
103400461 AGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
103400526 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
* *
103400549 AGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
103400614 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
103400637 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
103400702 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
*
103400725 AGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
103400790 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
* * *
103400813 AGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
* *
103400878 TGATGGAGCTGGTTGAAGAAAAAA
66 TGATAGAGCTGGTTGAAG-ACAAA
* * * *
103400902 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAAAGACAAATCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
103400967 TGATAGAGCTGGTTGGAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
* * *
103400990 ATATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
103401055 TGATGGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
* *
103401078 GGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
103401143 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTGAAGACAAA
* * * ** *
103401166 AGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCATCCATCGATT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
* * * *
103401229 G-CAGTGGAGCTAGTTAAAGA-AAA
65 GTGA-TAGAGCTGGTTGAAGACAAA
* * **
103401252 AGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATC-AA-AAACAAAGCCTTGCCTCCATCGGTT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
103401315 G
65 G
103401316 CATTGGAGCT
Statistics
Matches: 882, Mismatches: 57, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
85 3 0.00
86 66 0.07
87 28 0.03
88 707 0.80
89 78 0.09
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
TGATAGAGCTGGTTGAAGACAAA
Found at i:103401700 original size:46 final size:46
Alignment explanation
Indices: 103401633--103401930 Score: 245
Period size: 46 Copynumber: 6.8 Consensus size: 46
103401623 GAAGATCACA
103401633 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
*
103401679 TCAGGTCTTATCTCCCTGAGATTACAGTAGAACAGACCAAAGAATT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
* * * * *
103401725 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAG
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAT-T
* * * * *
103401771 T-A-ATCCTATCTCCTTGAGATTACAATGG---AG--C---GGATT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
** * * * *
103401807 AAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CA--
1 TCAGG-TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGACCAAAGAATT
103401849 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
* * * *
103401895 TTAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGA
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGA
103401931 TTGAAGCCAG
Statistics
Matches: 203, Mismatches: 30, Indels: 38
0.75 0.11 0.14
Matches are distributed among these distances:
36 1 0.00
37 3 0.01
38 1 0.00
39 19 0.09
40 1 0.00
41 28 0.14
42 6 0.03
43 1 0.00
44 25 0.12
45 3 0.01
46 115 0.57
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (46 bp):
TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
Found at i:103401885 original size:216 final size:214
Alignment explanation
Indices: 103401511--103402098 Score: 833
Period size: 216 Copynumber: 2.7 Consensus size: 214
103401501 CTAAAGCCAG
103401511 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
103401576 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
*
103401641 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGGTCTTATCTCCCTGAGATTACAG
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
103401706 TAGAACAGACCAAAG-AATTTC
196 TAGAACAGACCAAAGCAA---C
103401727 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
103401792 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
* *
103401857 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTTAGATCTTATCTCCCTGAGGTTACAG
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
* * *** * *
103401922 TGGAGCAGATTGAAGCCAG
196 TAGAACAGACCAAAGCAAC
* * * * *
103401941 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-ATACTATCTCCCTGA-AGT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGA-T
* * * * * * *
103402004 TACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCGCATC
65 TACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATC
* * *
103402069 AAGTCTTATTTCCCTGAAGA-TGCAGTGGAA
125 AGGTCTTATCTCCCTG-AGATTACAGTGGAA
103402099 TAGATTGAAA
Statistics
Matches: 339, Mismatches: 25, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
212 1 0.00
213 26 0.08
214 43 0.13
216 202 0.60
217 1 0.00
218 63 0.19
219 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (214 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
TAGAACAGACCAAAGCAAC
Found at i:103402008 original size:43 final size:44
Alignment explanation
Indices: 103401467--103402013 Score: 192
Period size: 44 Copynumber: 12.7 Consensus size: 44
103401457 TGGAAATTAC
* * * * * * *
103401467 AGATCTTGTCCCCCTGAAGTCACAGTGGGGCA-AACTAAAGCCAG
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATC-GAAGACAG
* * *
103401511 AGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAGATAG
1 AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAG
* * * * *
103401555 TA-ATCCTATCTCCTTG-AGATTACAATGGAGCGGAT--TA-A-AG
1 -AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAG
* * * *
103401595 -GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC-ACA-TCAG
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGA-AGACAG
* * *
103401637 -G-TCTTATCTCCCTG-AGATTACAGTGGAACAGACCAAAGAATTTCAG
1 AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAG-A---CAG
* * * * *
103401683 -G-TCTTATCTCCCTG-AGATTACAGTAGAACAGACCAAAGA-ATTTC
1 AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACA---G
* * *
103401727 AGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAGATAG
1 AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAG
* * * * *
103401771 TA-ATCCTATCTCCTTG-AGATTACAATGGAGCGGAT--TA-A-AG
1 -AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAG
* * * *
103401811 -GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC-ACA-TCAG
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGA-AGACAG
* * * *
103401853 -G-TCTTATCTCCCTG-AGATTACAGTGGAACAGACCAAAGA-ATTTT
1 AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACA---G
* * *
103401897 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
*
103401941 AGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAG
**
103401984 CTATAC-TATCTCCCTGAAGTTACAGTGGAG
1 AGAT-CTTATCTCCCTGAAGTTACAGTGGAG
103402014 TGGATTAAAA
Statistics
Matches: 391, Mismatches: 72, Indels: 81
0.72 0.13 0.15
Matches are distributed among these distances:
39 46 0.12
40 12 0.03
41 58 0.15
42 10 0.03
43 25 0.06
44 126 0.32
45 7 0.02
46 104 0.27
47 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
Found at i:103402033 original size:87 final size:89
Alignment explanation
Indices: 103401854--103402053 Score: 210
Period size: 87 Copynumber: 2.3 Consensus size: 89
103401844 TCACATCAGG
* * *
103401854 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTTAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAA-TCTAGATCTTATCTCCCTGAAGTTA
* **
103401919 CAGTGGAGCAGATTGAAGCCAGAGA
65 CAGTGGAGCAGATTAAAGAAAGAGA
* * * *
103401944 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-CTATA-C-TATCTCCCTGAAGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGA-ATCTAGATCTTATCTCCCTGAAGTTA
** *
103402006 CAGTGGAGTGGATTAAAATAAAG-GA
65 CAGTGGAGCAGATT-AAAGAAAGAGA
* *
103402031 TCTTATCTCTCTGAGGTTACAGC
1 TCTTATCTCCCTGAGATTACAGC
103402054 AGAGTAGGTC
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
87 50 0.54
88 5 0.05
89 3 0.03
90 34 0.37
91 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (89 bp):
TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCTAGATCTTATCTCCCTGAAGTTAC
AGTGGAGCAGATTAAAGAAAGAGA
Found at i:103403634 original size:3 final size:3
Alignment explanation
Indices: 103403626--103403675 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
103403616 GATTTAGTCC
103403626 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
103403674 TA
1 TA
103403676 CCTACTTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:103403946 original size:24 final size:23
Alignment explanation
Indices: 103403893--103403949 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
103403883 AAATATACTT
*
103403893 TATATATTTTGTTAATTTATATA
1 TATATATTTTGTTAATGTATATA
* * *
103403916 TACATATTTTAGTTTATGTCTATA
1 TATATATTTT-GTTAATGTATATA
103403940 TATATATTTT
1 TATATATTTT
103403950 TATATTTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 9 0.32
24 19 0.68
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (23 bp):
TATATATTTTGTTAATGTATATA
Found at i:103410909 original size:13 final size:13
Alignment explanation
Indices: 103410891--103410915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103410881 ATATTGTTTT
103410891 TTCAGTGTTTTAA
1 TTCAGTGTTTTAA
103410904 TTCAGTGTTTTA
1 TTCAGTGTTTTA
103410916 GTTGGATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (13 bp):
TTCAGTGTTTTAA
Found at i:103419495 original size:139 final size:138
Alignment explanation
Indices: 103419245--103419573 Score: 622
Period size: 139 Copynumber: 2.4 Consensus size: 138
103419235 TTCCACATTT
* *
103419245 TAACAAATTGATACCTATATAAGCAAAGATCAAAACTTTAGCATAATTGATAACAGCCATGAAAT
1 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATAACAGCCATGAAAT
*
103419310 CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACATTTTTTAAC
66 CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACA-TTTGTAAC
103419375 AGTGTAAGG
130 AGTGTAAGG
103419384 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATAACAGCCATGAAAT
1 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATAACAGCCATGAAAT
103419449 CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACATTTGTAACA
66 CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACATTTGTAACA
103419514 GTGTAAGG
131 GTGTAAGG
103419522 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATA
1 TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATA
103419574 CCACTAACTA
Statistics
Matches: 187, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
138 68 0.36
139 119 0.64
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.28
Consensus pattern (138 bp):
TAACAAATTGATACCTACATAAGCAAAGATCAAAACTTTAACATAATTGATAACAGCCATGAAAT
CAATGTAACTCTCAAAACATTAACAAAATGCACTCAATCAGTGCCAATTTTCTACATTTGTAACA
GTGTAAGG
Found at i:103424280 original size:21 final size:19
Alignment explanation
Indices: 103424255--103424312 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
103424245 AAAAAAATTA
*
103424255 AATTTTTTATAACTTCTTTAT
1 AATTTTTTATAA-TT-TATAT
*
103424276 AATTTTTAATAATTTATAT
1 AATTTTTTATAATTTATAT
103424295 AATATTTTT-TAAATTTAT
1 AAT-TTTTTAT-AATTTAT
103424313 GTGACATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 8 0.25
20 13 0.41
21 11 0.34
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (19 bp):
AATTTTTTATAATTTATAT
Found at i:103430368 original size:22 final size:22
Alignment explanation
Indices: 103430345--103430388 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
103430335 ATGAACTCTT
103430345 AAACTCTTAAAGTGATTCAATTA
1 AAACT-TTAAAGTGATTCAATTA
*
103430368 AAAGTTTAAAGTGATTCAATT
1 AAACTTTAAAGTGATTCAATT
103430389 GAAGAATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (22 bp):
AAACTTTAAAGTGATTCAATTA
Found at i:103433092 original size:62 final size:60
Alignment explanation
Indices: 103433020--103433224 Score: 241
Period size: 62 Copynumber: 3.3 Consensus size: 60
103433010 GCATACATTC
103433020 TTTGCCTTCAATTCAATAAATTCAACCAAAGAAGAGGGAACTTTAGGTCATATTACCCAACA
1 TTTGCCTTCAATTCAATAAATTCAACCAAA-AAGAGGGAACTTTAGGTCA-ATTACCCAACA
* * *
103433082 TTTGCCTTCAATTTACCCAAAAAATTCAACCAAAAA-AGAGGAACCTTAGGTCAATTTACCTAAC
1 TTTGCCTTCAA-TT---CAATAAATTCAACCAAAAAGAG-GGAACTTTAGGTCAA-TTACCCAAC
103433146 A
60 A
* * * *
103433147 TTTGCCTTCAATTCCATAAATTCAAGCAGAAAAGAGGGATCTTTAGGTCAATTAACCCAATA
1 TTTGCCTTCAATTCAATAAATTCAACCA-AAAAGAGGGAACTTTAGGTCAATT-ACCCAACA
*
103433209 TTTGCTTTCAATTCAA
1 TTTGCCTTCAATTCAA
103433225 AACCCAACAT
Statistics
Matches: 122, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
61 14 0.11
62 48 0.39
63 4 0.03
64 5 0.04
65 35 0.29
66 16 0.13
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (60 bp):
TTTGCCTTCAATTCAATAAATTCAACCAAAAAGAGGGAACTTTAGGTCAATTACCCAACA
Found at i:103434728 original size:48 final size:48
Alignment explanation
Indices: 103434676--103434771 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
103434666 TGTTTCATGC
103434676 TATAATATCGCTATAGTATTTAATCTCACCACCACCACTGTTTTTACA
1 TATAATATCGCTATAGTATTTAATCTCACCACCACCACTGTTTTTACA
* *
103434724 TATAATATCGCTATAGTATTTAATCTCACTACCACCGCTGTTTTTACA
1 TATAATATCGCTATAGTATTTAATCTCACCACCACCACTGTTTTTACA
103434772 CTAACCAGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
TATAATATCGCTATAGTATTTAATCTCACCACCACCACTGTTTTTACA
Found at i:103439172 original size:62 final size:62
Alignment explanation
Indices: 103439075--103439202 Score: 238
Period size: 62 Copynumber: 2.1 Consensus size: 62
103439065 ACCTTTAGCT
*
103439075 TTGTTCCAAGCAACCCTAACCCTAAACTCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
1 TTGTTCCAAGCAACCCTAACCCTAAACCCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
*
103439137 TTGTTCCAAGGAACCCTAACCCTAAACCCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
1 TTGTTCCAAGCAACCCTAACCCTAAACCCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
103439199 TTGT
1 TTGT
103439203 GGAAAGGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (62 bp):
TTGTTCCAAGCAACCCTAACCCTAAACCCTATATCTAAATGAAGTGTTTGGATATGAAAAAG
Found at i:103441698 original size:33 final size:33
Alignment explanation
Indices: 103441656--103441722 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
103441646 ATCTATGAGA
*
103441656 ACTATATACATCATAATTTGCCCCTCTTAATGT
1 ACTATATACATCATAATTTGCCCCTCTAAATGT
103441689 ACTATATACATCATAATTTGCCCCTCTAAATGT
1 ACTATATACATCATAATTTGCCCCTCTAAATGT
103441722 A
1 A
103441723 GGTAAATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (33 bp):
ACTATATACATCATAATTTGCCCCTCTAAATGT
Found at i:103452502 original size:6 final size:6
Alignment explanation
Indices: 103452485--103452522 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
103452475 ACCCTTCTTC
*
103452485 TCCCCTT TCCCCT TCCCCT TCCCTT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
103452523 GGTTTGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TCCCCT
Found at i:103452522 original size:18 final size:18
Alignment explanation
Indices: 103452487--103452522 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
103452477 CCTTCTTCTC
103452487 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
103452505 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
103452523 GGTTTGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (18 bp):
CCCTTTCCCCTTCCCCTT
Found at i:103455679 original size:59 final size:58
Alignment explanation
Indices: 103455606--103455804 Score: 195
Period size: 59 Copynumber: 3.3 Consensus size: 58
103455596 AATACTAAGA
*
103455606 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTAAAATTAT
1 ATTTTA-TATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTAAAATTAT
* ** * * * * * * *
103455665 ATTTTATAGTATTATATA-TTATGATTTTAGTAAATTCATATAAGAA-TATTTAATACTAAGA
1 ATTTTATA-TATTATATATTTTTG-TTAAATTATATTTA-ATAATAATTATTTAA-AATTA-T
* *
103455726 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
1 ATTTTA-TATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTAAAATTAT
103455785 ATTTTATAATATTATATATT
1 ATTTTAT-ATATTATATATT
103455805 ATAATTTTAG
Statistics
Matches: 107, Mismatches: 24, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
58 7 0.07
59 47 0.44
60 18 0.17
61 29 0.27
62 6 0.06
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.54
Consensus pattern (58 bp):
ATTTTATATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTAAAATTAT
Found at i:103455740 original size:61 final size:59
Alignment explanation
Indices: 103455584--103455754 Score: 159
Period size: 59 Copynumber: 2.8 Consensus size: 59
103455574 TGATACAATC
* * * *
103455584 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTA
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATA-TTATGTTAAAGTAAATTCA
* * * * * **
103455644 ATAATAATTATTTAA-AATTA-TATTTTA-TAGTATTATATATTATGATTTTAGTAAATTCA
1 ATAAGAA-TATTTAATACTAAGAATTTTATTA-AATTATATATTATG-TTAAAGTAAATTCA
*
103455703 TATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAA
1 -ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATA-TTATGTTAAA
103455755 TTATATTTAA
Statistics
Matches: 84, Mismatches: 19, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
58 6 0.07
59 30 0.36
60 18 0.21
61 24 0.29
62 6 0.07
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (59 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTATGTTAAAGTAAATTCA
Done.