Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 32 of 316
Found at i:9124391 original size:3 final size:3
Alignment explanation
Indices: 9124383--9124440 Score: 64
Period size: 3 Copynumber: 18.0 Consensus size: 3
9124373 GGCTCAGTTT
9124383 GAA GAA GAA GAA GAA GGAA GAA GAA GAA GAA GAAA GAA -AGA GAAA GAA
1 GAA GAA GAA GAA GAA -GAA GAA GAA GAA GAA G-AA GAA GA-A G-AA GAA
9124431 GAAA GAA GAA
1 G-AA GAA GAA
9124441 AAAAAGAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
2 1 0.02
3 36 0.73
4 11 0.22
5 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:9124404 original size:13 final size:13
Alignment explanation
Indices: 9124386--9124438 Score: 56
Period size: 13 Copynumber: 4.0 Consensus size: 13
9124376 TCAGTTTGAA
9124386 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
9124399 GAAGAAGAAGAA-
1 GAAGAAGAAGAAG
9124411 GAAGAAAGAA-AGAG
1 GAAG-AAGAAGA-AG
*
9124425 AAAGAAGAAAGAAG
1 GAAGAAG-AAGAAG
9124439 AAAAAAAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
12 5 0.15
13 21 0.62
14 7 0.21
15 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:9124404 original size:16 final size:16
Alignment explanation
Indices: 9124384--9124449 Score: 82
Period size: 16 Copynumber: 4.1 Consensus size: 16
9124374 GCTCAGTTTG
*
9124384 AAGAAGAAGAAGAAGG
1 AAGAAGAAGAAGAAGA
9124400 AAGAAGAAGAAGAAGA
1 AAGAAGAAGAAGAAGA
9124416 AAGAA-AGAGAAAGAAGA
1 AAGAAGA-AG-AAGAAGA
*
9124433 AAGAAGAA-AAAAAGA
1 AAGAAGAAGAAGAAGA
9124448 AA
1 AA
9124450 AAAAATTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
15 9 0.20
16 22 0.49
17 13 0.29
18 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (16 bp):
AAGAAGAAGAAGAAGA
Found at i:9124734 original size:22 final size:21
Alignment explanation
Indices: 9124706--9124758 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
9124696 GCAGCCCAGC
**
9124706 AGAAAAAAAAAGGAAGAAAAAGG
1 AGAAAAAAAAA--AAGAAAAACA
9124729 AGAAAAAGAAAAAAGAAAAACA
1 AGAAAAA-AAAAAAGAAAAACA
9124751 AGAAAAAA
1 AGAAAAAA
9124759 GGGGTTCAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 1 0.04
22 15 0.56
23 7 0.26
24 4 0.15
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (21 bp):
AGAAAAAAAAAAAGAAAAACA
Found at i:9124737 original size:15 final size:16
Alignment explanation
Indices: 9124719--9124759 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
9124709 AAAAAAAAGG
* *
9124719 AAGAAAAAGGAGAAA-
1 AAGAAAAAAGAAAAAC
9124734 AAGAAAAAAGAAAAAC
1 AAGAAAAAAGAAAAAC
9124750 AAGAAAAAAG
1 AAGAAAAAAG
9124760 GGGTTCAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAGAAAAAC
Found at i:9124743 original size:16 final size:17
Alignment explanation
Indices: 9124722--9124760 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
9124712 AAAAAGGAAG
*
9124722 AAAAAGGAGAAA-AAGA
1 AAAAAGGAAAAACAAGA
9124738 AAAAA-GAAAAACAAGA
1 AAAAAGGAAAAACAAGA
9124754 AAAAAGG
1 AAAAAGG
9124761 GGTTCAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 14 0.70
17 1 0.05
ACGTcount: A:0.77, C:0.03, G:0.21, T:0.00
Consensus pattern (17 bp):
AAAAAGGAAAAACAAGA
Found at i:9124919 original size:5 final size:5
Alignment explanation
Indices: 9124909--9124941 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
9124899 CATTTATATT
*
9124909 TTTAA TTTAA TTTAA TTTAA TTTAA TTTTA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
9124942 TTTTATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (5 bp):
TTTAA
Found at i:9124960 original size:15 final size:15
Alignment explanation
Indices: 9124908--9124959 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
9124898 GCATTTATAT
*
9124908 TTTTAATTTAATTTAA
1 TTTT-ATTTAATTTTA
*
9124924 TTTAATTTAATTTTA
1 TTTTATTTAATTTTA
9124939 TTTT-TTT-ATTTTA
1 TTTTATTTAATTTTA
9124952 TTTTATTT
1 TTTTATTT
9124960 TAAATACTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 10 0.31
14 6 0.19
15 13 0.41
16 3 0.09
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTATTTAATTTTA
Found at i:9125300 original size:18 final size:18
Alignment explanation
Indices: 9125277--9125764 Score: 242
Period size: 17 Copynumber: 27.2 Consensus size: 18
9125267 GAAAAATCAG
9125277 AAAATTTTCGTGTTTTCA
1 AAAATTTTCGTGTTTTCA
*
9125295 AAAATTCTCGTGTTTTCAA
1 AAAATTTTCGTGTTTTC-A
*
9125314 AAAATTTT-AT-TTTTCA
1 AAAATTTTCGTGTTTTCA
*
9125330 AAATTTTTCGTGTTTTCTA
1 AAAATTTTCGTGTTTTC-A
* * * *
9125349 AAAATTTCCAT-ATTTCT
1 AAAATTTTCGTGTTTTCA
9125366 AAAATTTTCGTG-TTT-A
1 AAAATTTTCGTGTTTTCA
* *
9125382 AAAAATTTCGTATTTTCA
1 AAAATTTTCGTGTTTTCA
* ** *
9125400 AAATTTTTTATTTTTTTCA
1 AAA-ATTTTCGTGTTTTCA
* * *
9125419 ACAATTCTCGAG-TTTCA
1 AAAATTTTCGTGTTTTCA
* *
9125436 CAAATTCTCGTGTTTT-A
1 AAAATTTTCGTGTTTTCA
* ** *
9125453 AAATTTTTTATGTTTTAA
1 AAAATTTTCGTGTTTTCA
9125471 AAAATAAATTTC-TCGTGTTTCAAA
1 AAAAT---TTTCGT-GT-TTTC--A
* *
9125495 AAAATTGTCATGTTTT-A
1 AAAATTTTCGTGTTTTCA
* *
9125512 AAAATTTTCATG-TTTCT
1 AAAATTTTCGTGTTTTCA
*
9125529 AAAATGTTT-GT-ATTTCAA
1 AAAAT-TTTCGTGTTTTC-A
**
9125547 AAAATCCTCGTGTTTT-A
1 AAAATTTTCGTGTTTTCA
* * *
9125564 AAAATTCTCATG-TTTAA
1 AAAATTTTCGTGTTTTCA
*
9125581 AAAATCTTCGTGTTTTC-
1 AAAATTTTCGTGTTTTCA
* *
9125598 AAAATTCTAGTG-TTT-A
1 AAAATTTTCGTGTTTTCA
*
9125614 AAAATTTTCATGTTTTCA
1 AAAATTTTCGTGTTTTCA
* *
9125632 AAAATTTCCCCTGTTTTCA
1 AAAATTT-TCGTGTTTTCA
* * *
9125651 AAAATTCTCGTATTTT-G
1 AAAATTTTCGTGTTTTCA
*
9125668 AAAATTTTCTTGTTTTCAAAAA
1 AAAATTTTCGTGTTTTC----A
*
9125690 AAAACTTTCGTGTTTT-A
1 AAAATTTTCGTGTTTTCA
* * *
9125707 TAAATCTCCGTGTTTTCAA
1 AAAATTTTCGTGTTTTC-A
* *
9125726 AAAATTCTCGT-CTTTCA
1 AAAATTTTCGTGTTTTCA
9125743 AAAATTTTCGTGTTTTCA
1 AAAATTTTCGTGTTTTCA
9125761 AAAA
1 AAAA
9125765 ATTGACCTTG
Statistics
Matches: 350, Mismatches: 82, Indels: 76
0.69 0.16 0.15
Matches are distributed among these distances:
16 36 0.10
17 140 0.40
18 81 0.23
19 55 0.16
20 4 0.01
21 10 0.03
22 18 0.05
24 6 0.02
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.47
Consensus pattern (18 bp):
AAAATTTTCGTGTTTTCA
Found at i:9125331 original size:35 final size:36
Alignment explanation
Indices: 9125289--9125689 Score: 148
Period size: 35 Copynumber: 11.3 Consensus size: 36
9125279 AATTTTCGTG
*
9125289 TTTTCAAAAATTCTCGTGTTTTCAAAAAATTT-TAT
1 TTTTCAAAAATTTTCGTGTTTTCAAAAAATTTCTAT
* * *
9125324 TTTTCAAAATTTTTCGTGTTTTCTAAAAATTTCCAT
1 TTTTCAAAAATTTTCGTGTTTTCAAAAAATTTCTAT
* *
9125360 ATTTCTAAAATTTTCGTG-TTT-AAAAAATTTCGTA-
1 TTTTCAAAAATTTTCGTGTTTTCAAAAAATTTC-TAT
* ** * * *
9125394 TTTTCAAAATTTTTTATTTTTTTC-AACAATTCTCGA-
1 TTTTCAAAA-ATTTTCGTGTTTTCAAAAAATT-TCTAT
* * * * *
9125430 GTTTCACAAATTCTCGTGTTTT--AAAATTTTTTAT
1 TTTTCAAAAATTTTCGTGTTTTCAAAAAATTTCTAT
*
9125464 GTTTTAAAAAATAAATTTC-TCGTGTTTCAAAAAAATTGTC-AT
1 -TTTTCAAAAAT---TTTCGT-GT-TTTC-AAAAAATT-TCTAT
* * *
9125506 GTTTT-AAAAATTTTCATG-TTTC-TAAAATGTT-TGT
1 -TTTTCAAAAATTTTCGTGTTTTCAAAAAAT-TTCTAT
* **
9125540 ATTTCAAAAAATCCTCGTGTTTT--AAAAA-TTCTCAT
1 TTTTC-AAAAATTTTCGTGTTTTCAAAAAATTTCT-AT
* * *
9125575 GTTTAAAAAATCTTCGTGTTTTC--AAAA-TTCTAGT
1 TTTTCAAAAATTTTCGTGTTTTCAAAAAATTTCTA-T
* * **
9125609 GTTT-AAAAATTTTCATGTTTTC-AAAAATTTCCCCT
1 TTTTCAAAAATTTTCGTGTTTTCAAAAAATTT-CTAT
* * * *
9125644 GTTTTCAAAAATTCTCGTATTTT-GAAAATTTTCT-T
1 -TTTTCAAAAATTTTCGTGTTTTCAAAAAATTTCTAT
9125679 GTTTTCAAAAA
1 -TTTTCAAAAA
9125690 AAAACTTTCG
Statistics
Matches: 278, Mismatches: 55, Indels: 66
0.70 0.14 0.17
Matches are distributed among these distances:
33 24 0.09
34 62 0.22
35 88 0.32
36 46 0.17
37 24 0.09
38 10 0.04
39 4 0.01
41 6 0.02
42 13 0.05
43 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (36 bp):
TTTTCAAAAATTTTCGTGTTTTCAAAAAATTTCTAT
Found at i:9125561 original size:52 final size:50
Alignment explanation
Indices: 9125505--9125682 Score: 146
Period size: 52 Copynumber: 3.4 Consensus size: 50
9125495 AAAATTGTCA
** * *
9125505 TGTTTTAAAAATTTTCATGTTTCTAAAATGTT-TGTATTTCAAAAAATCCTCG
1 TGTTTTAAAAATTTTCATGTTTAAAAAATCTTCTGT-TTTC--AAAATCCTAG
* *
9125557 TGTTTTAAAAATTCTCATGTTTAAAAAATCTTCGTGTTTTCAAAATTCTAG
1 TGTTTTAAAAATTTTCATGTTTAAAAAATCTTC-TGTTTTCAAAATCCTAG
* * *
9125608 TG-TTTAAAAATTTTCATGTTTTCAAAAAT-TTCCCCTGTTTTCAAAAATTCTCG
1 TGTTTTAAAAATTTTCATG-TTTAAAAAATCTT---CTGTTTTC-AAAATCCTAG
* * *
9125661 TATTTTGAAAATTTTCTTGTTT
1 TGTTTTAAAAATTTTCATGTTT
9125683 TCAAAAAAAA
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
50 17 0.16
51 19 0.18
52 35 0.33
53 18 0.17
54 17 0.16
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.48
Consensus pattern (50 bp):
TGTTTTAAAAATTTTCATGTTTAAAAAATCTTCTGTTTTCAAAATCCTAG
Found at i:9125619 original size:16 final size:17
Alignment explanation
Indices: 9125546--9125637 Score: 66
Period size: 16 Copynumber: 5.4 Consensus size: 17
9125536 TTGTATTTCA
* *
9125546 AAAAATCCTCGTGTTTT
1 AAAAATTCTAGTGTTTT
9125563 AAAAATTCTCA-TG-TTT
1 AAAAATTCT-AGTGTTTT
* *
9125579 AAAAAATCTTCGTGTTTT
1 AAAAATTC-TAGTGTTTT
*
9125597 CAAAATTCTAGTG-TTT
1 AAAAATTCTAGTGTTTT
*
9125613 AAAAATTTTCA-TGTTTT
1 AAAAATTCT-AGTGTTTT
9125630 CAAAAATT
1 -AAAAATT
9125638 TCCCCTGTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
16 22 0.37
17 21 0.36
18 16 0.27
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (17 bp):
AAAAATTCTAGTGTTTT
Found at i:9125868 original size:22 final size:22
Alignment explanation
Indices: 9125826--9125867 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
9125816 ATAATTTATC
*
9125826 AAAATTTTTGTGTTTTCAAAAT
1 AAAATTTTTGTGTTTTAAAAAT
9125848 AAAA-TTTTGTGTTTTAAAAA
1 AAAATTTTTGTGTTTTAAAAA
9125868 AATTCTCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (22 bp):
AAAATTTTTGTGTTTTAAAAAT
Found at i:9125885 original size:17 final size:18
Alignment explanation
Indices: 9125865--9125907 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
9125855 TGTGTTTTAA
9125865 AAAAATTCTCATG-TTTC
1 AAAAATTCTCATGTTTTC
* * *
9125882 AAAAACTGTCGTGTTTTC
1 AAAAATTCTCATGTTTTC
9125900 AAAAATTC
1 AAAAATTC
9125908 CCGTGTTAAA
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.37
Consensus pattern (18 bp):
AAAAATTCTCATGTTTTC
Found at i:9125935 original size:41 final size:43
Alignment explanation
Indices: 9125890--9125975 Score: 124
Period size: 42 Copynumber: 2.0 Consensus size: 43
9125880 TCAAAAACTG
9125890 TCGTGTTTTC-AAAAATTCCCGTG-TTAAAAAATTTT-GTGTTT
1 TCGTGTTTTCAAAAAATT-CCGTGTTTAAAAAATTTTCGTGTTT
* *
9125931 TCGTGTTTTCAAAAAATTTCGTGTTTCAAAAATTTTCGTGTTT
1 TCGTGTTTTCAAAAAATTCCGTGTTTAAAAAATTTTCGTGTTT
9125974 TC
1 TC
9125976 AAAAATTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
41 14 0.35
42 18 0.45
43 8 0.20
ACGTcount: A:0.26, C:0.13, G:0.14, T:0.48
Consensus pattern (43 bp):
TCGTGTTTTCAAAAAATTCCGTGTTTAAAAAATTTTCGTGTTT
Found at i:9125959 original size:17 final size:18
Alignment explanation
Indices: 9125929--9125980 Score: 88
Period size: 17 Copynumber: 2.9 Consensus size: 18
9125919 AATTTTGTGT
9125929 TTTCGTGTTTTCAAAAAA
1 TTTCGTGTTTTCAAAAAA
*
9125947 TTTCGTG-TTTCAAAAAT
1 TTTCGTGTTTTCAAAAAA
9125964 TTTCGTGTTTTCAAAAA
1 TTTCGTGTTTTCAAAAA
9125981 TTATTATTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 16 0.50
18 16 0.50
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (18 bp):
TTTCGTGTTTTCAAAAAA
Found at i:9125981 original size:18 final size:18
Alignment explanation
Indices: 9125928--9125982 Score: 94
Period size: 18 Copynumber: 3.1 Consensus size: 18
9125918 AAATTTTGTG
9125928 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
9125946 ATTTCGTG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
9125963 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
9125981 TT
1 TT
9125983 ATTATTCTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
17 16 0.47
18 18 0.53
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAA
Found at i:9127281 original size:62 final size:62
Alignment explanation
Indices: 9127202--9127426 Score: 283
Period size: 62 Copynumber: 3.6 Consensus size: 62
9127192 GTGTAGGTTT
9127202 CACACGGCCAAGGACACGGGCGTGTGCCCAGGCCGTGTAACTCACTGTTTGGGGTATAAAAC
1 CACACGGCCAAGGACACGGGCGTGTGCCCAGGCCGTGTAACTCACTGTTTGGGGTATAAAAC
* * * * * *
9127264 CACACGGCC-AGGAACACGGGCTTTTGTCTAGGCCTTATAACTCACTGTTTGGGGTATAAAAC
1 CACACGGCCAAGG-ACACGGGCGTGTGCCCAGGCCGTGTAACTCACTGTTTGGGGTATAAAAC
* * * * * *
9127326 CACACAGCCAAGGACACGGGCGTGTGCCCAAGACC-TGTAACTTATTTTTTGGGGTATAAGAC
1 CACACGGCCAAGGACACGGGCGTGTGCCC-AGGCCGTGTAACTCACTGTTTGGGGTATAAAAC
* *
9127388 CACACGGCCAAGGCACGCGGGTGTGTGCCCAGGCCGTGT
1 CACACGGCCAAGG-ACACGGGCGTGTGCCCAGGCCGTGT
9127427 GGTAAAATAT
Statistics
Matches: 137, Mismatches: 21, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
61 3 0.02
62 110 0.80
63 24 0.18
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (62 bp):
CACACGGCCAAGGACACGGGCGTGTGCCCAGGCCGTGTAACTCACTGTTTGGGGTATAAAAC
Found at i:9128220 original size:26 final size:26
Alignment explanation
Indices: 9128191--9128240 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
9128181 ATTTGTTTTA
9128191 GAATGTTATGGATTTATGAAGATTAT
1 GAATGTTATGGATTTATGAAGATTAT
9128217 GAATGTTATGGATTTATGAAGATT
1 GAATGTTATGGATTTATGAAGATT
9128241 TTGTCTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (26 bp):
GAATGTTATGGATTTATGAAGATTAT
Found at i:9129063 original size:22 final size:22
Alignment explanation
Indices: 9129038--9129083 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
9129028 AACTTTCCAA
9129038 TAATCATAGAAATAACATACTT
1 TAATCATAGAAATAACATACTT
* *
9129060 TAATCATAGAAATAATATATTT
1 TAATCATAGAAATAACATACTT
9129082 TA
1 TA
9129084 CATGCTGGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (22 bp):
TAATCATAGAAATAACATACTT
Found at i:9129846 original size:14 final size:14
Alignment explanation
Indices: 9129827--9129853 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9129817 TGTTTAGATT
9129827 ATTTTAAAATTAAC
1 ATTTTAAAATTAAC
9129841 ATTTTAAAATTAA
1 ATTTTAAAATTAA
9129854 GACATTACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTTTAAAATTAAC
Found at i:9131840 original size:20 final size:20
Alignment explanation
Indices: 9131802--9131838 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9131792 AGTTCACTAC
9131802 TTTTATTTCTTAGAATTTAG
1 TTTTATTTCTTAGAATTTAG
*
9131822 TTTTATTTTTTA-AATTT
1 TTTTATTTCTTAGAATTT
9131839 TAAAAACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTATTTCTTAGAATTTAG
Found at i:9147136 original size:91 final size:90
Alignment explanation
Indices: 9146950--9147117 Score: 230
Period size: 91 Copynumber: 1.9 Consensus size: 90
9146940 CTCAAACTTT
* *
9146950 AAAAAAAAAACAATTAAGTCCCTCTTTTTTTTTCACTCAATTGAGCACTTAAACTTTCAAAACGC
1 AAAAAAAAAACAATTAAGCCCCTCTTTTCTTTTCACTCAATTGAGCACTTAAACTTTCAAAACGC
*
9147015 ATCAAAAATGCCTTCAAACTTCTTC
66 ATCAAAAATGACTTCAAACTTCTTC
** * * * * *
9147040 AAAAAAAAAGTAATTAAGCCCCTGTTCTTCTTTTCACTCAATTGGGTACTTGAACTTTCAAAATG
1 AAAAAAAAAACAATTAAGCCCCTCTT-TTCTTTTCACTCAATTGAGCACTTAAACTTTCAAAACG
9147105 CATCAAAAA-GACT
65 CATCAAAAATGACT
9147118 CTAAATTTAT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 25 0.37
91 42 0.63
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (90 bp):
AAAAAAAAAACAATTAAGCCCCTCTTTTCTTTTCACTCAATTGAGCACTTAAACTTTCAAAACGC
ATCAAAAATGACTTCAAACTTCTTC
Found at i:9147246 original size:27 final size:28
Alignment explanation
Indices: 9147208--9147260 Score: 99
Period size: 27 Copynumber: 1.9 Consensus size: 28
9147198 AGAAAATTTA
9147208 TTAAATTTTAATAAAAA-TATAAAAATT
1 TTAAATTTTAATAAAAATTATAAAAATT
9147235 TTAAATTTTAATAAAAATTATAAAAA
1 TTAAATTTTAATAAAAATTATAAAAA
9147261 AATTTAACGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
TTAAATTTTAATAAAAATTATAAAAATT
Found at i:9147529 original size:57 final size:56
Alignment explanation
Indices: 9147462--9147589 Score: 143
Period size: 57 Copynumber: 2.2 Consensus size: 56
9147452 TTCTTACAAC
*** *
9147462 TTTATAAAATTTTATGCTTTTTTATATTTCTATAT-A-CTTTATATTTTTTTTACGATT
1 TTTATAAAATTTTACAATTTTTTATATTT-TATATGATCTTTATATTTTTTCTA--ATT
* *
9147519 TTTATAAAATTTTACAATTTTTTATATTTTTTATGATTTTTATATTTTTTCTAATT
1 TTTATAAAATTTTACAATTTTTTATATTTTATATGATCTTTATATTTTTTCTAATT
*
9147575 TTTAATAAATTTTTA
1 TTT-ATAAAATTTTA
9147590 ATATTTGAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
56 10 0.16
57 37 0.61
58 14 0.23
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (56 bp):
TTTATAAAATTTTACAATTTTTTATATTTTATATGATCTTTATATTTTTTCTAATT
Found at i:9147533 original size:19 final size:20
Alignment explanation
Indices: 9147509--9147563 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
9147499 TTTATATTTT
9147509 TTTTACGATTTTTATA-AAA
1 TTTTACGATTTTTATATAAA
* **
9147528 TTTTACAATTTTT-TATATT
1 TTTTACGATTTTTATATAAA
*
9147547 TTTTATGATTTTTATAT
1 TTTTACGATTTTTATAT
9147564 TTTTTCTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 2 0.07
19 24 0.83
20 3 0.10
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (20 bp):
TTTTACGATTTTTATATAAA
Found at i:9147549 original size:18 final size:18
Alignment explanation
Indices: 9147508--9147577 Score: 52
Period size: 19 Copynumber: 3.8 Consensus size: 18
9147498 CTTTATATTT
* *
9147508 TTTTTACGATTTTTATAAA
1 TTTTTACAATTTTT-TATA
*
9147527 ATTTTACAATTTTTTATA
1 TTTTTACAATTTTTTATA
**
9147545 TTTTTTATGA-TTTTTATA
1 -TTTTTACAATTTTTTATA
*
9147563 TTTTTTCTAATTTTT
1 TTTTTAC-AATTTTT
9147578 AATAAATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
17 5 0.13
18 12 0.31
19 22 0.56
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTACAATTTTTTATA
Found at i:9147578 original size:18 final size:18
Alignment explanation
Indices: 9147480--9147578 Score: 72
Period size: 18 Copynumber: 5.3 Consensus size: 18
9147470 ATTTTATGCT
* *
9147480 TTTTTATATTTCTATATAC
1 TTTTTATATTT-TTTATAA
* * **
9147499 TTTATATTTTTTTTACGA
1 TTTTTATATTTTTTATAA
** *
9147517 TTTTTATAAAATTTTACAA
1 TTTTTAT-ATTTTTTATAA
*
9147536 TTTTTTATATTTTTTATGA
1 -TTTTTATATTTTTTATAA
*
9147555 TTTTTATATTTTTTCTAA
1 TTTTTATATTTTTTATAA
9147573 TTTTTA
1 TTTTTA
9147579 ATAAATTTTT
Statistics
Matches: 61, Mismatches: 17, Indels: 5
0.73 0.20 0.06
Matches are distributed among these distances:
18 31 0.51
19 23 0.38
20 7 0.11
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTTATATTTTTTATAA
Found at i:9147595 original size:9 final size:10
Alignment explanation
Indices: 9147517--9147589 Score: 62
Period size: 10 Copynumber: 7.6 Consensus size: 10
9147507 TTTTTTACGA
*
9147517 TTTTTATAAA
1 TTTTTATAAT
* *
9147527 ATTTTACAAT
1 TTTTTATAAT
9147537 TTTTTAT-AT
1 TTTTTATAAT
*
9147546 TTTTTATGA-
1 TTTTTATAAT
9147555 TTTTTAT-AT
1 TTTTTATAAT
*
9147564 TTTTTCTAAT
1 TTTTTATAAT
* *
9147574 TTTTAATAAA
1 TTTTTATAAT
9147584 TTTTTA
1 TTTTTA
9147590 ATATTTGAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
8 1 0.02
9 22 0.44
10 27 0.54
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:9147601 original size:27 final size:29
Alignment explanation
Indices: 9147571--9147624 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
9147561 TATTTTTTCT
*
9147571 AATTTTTAAT-AAATTT-TTAATATTTGA
1 AATTTTTAATAAAATTTAATAATATTTGA
*
9147598 AATTTTTATTAAAATTTAATAATATTT
1 AATTTTTAATAAAATTTAATAATATTT
9147625 ATAGCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 6 0.26
29 8 0.35
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (29 bp):
AATTTTTAATAAAATTTAATAATATTTGA
Found at i:9147664 original size:10 final size:9
Alignment explanation
Indices: 9147516--9147660 Score: 64
Period size: 9 Copynumber: 15.8 Consensus size: 9
9147506 TTTTTTTACG
9147516 ATTTTTATAA
1 ATTTTTAT-A
* *
9147526 AATTTTACA
1 ATTTTTATA
9147535 ATTTTTTATA
1 A-TTTTTATA
* *
9147545 TTTTTTATG
1 ATTTTTATA
9147554 ATTTTTATA
1 ATTTTTATA
* *
9147563 TTTTTTCTA
1 ATTTTTATA
9147572 ATTTTTAATA
1 ATTTTT-ATA
*
9147582 AATTTT-TA
1 ATTTTTATA
*
9147590 ATATTTGA-A
1 AT-TTTTATA
9147599 ATTTTTATTAA
1 ATTTTTA-T-A
* *
9147610 AATTTAATA
1 ATTTTTATA
*
9147619 ATATTTATA
1 ATTTTTATA
** *
9147628 GCTTTTATTG
1 ATTTTTA-TA
9147638 A-TTTTA-A
1 ATTTTTATA
*
9147645 GTTTTTATA
1 ATTTTTATA
9147654 ATTTTTA
1 ATTTTTA
9147661 ATAAAAGTAG
Statistics
Matches: 96, Mismatches: 29, Indels: 21
0.66 0.20 0.14
Matches are distributed among these distances:
8 12 0.12
9 57 0.59
10 21 0.22
11 6 0.06
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.61
Consensus pattern (9 bp):
ATTTTTATA
Found at i:9149376 original size:36 final size:36
Alignment explanation
Indices: 9149330--9149402 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
9149320 CGTTTAATGC
* *
9149330 TTAAATTTATGGTCTTTTAAATTCAAATTTTATTGT
1 TTAAAATTATGATCTTTTAAATTCAAATTTTATTGT
9149366 TTAAAATTATGATCTTTTAAATTCAAATTTTATTGT
1 TTAAAATTATGATCTTTTAAATTCAAATTTTATTGT
9149402 T
1 T
9149403 GATGGGATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (36 bp):
TTAAAATTATGATCTTTTAAATTCAAATTTTATTGT
Found at i:9149950 original size:13 final size:13
Alignment explanation
Indices: 9149932--9149956 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9149922 ATAATGGAGT
9149932 TTAAAATTAAAAA
1 TTAAAATTAAAAA
9149945 TTAAAATTAAAA
1 TTAAAATTAAAA
9149957 CAAAATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TTAAAATTAAAAA
Found at i:9152724 original size:15 final size:15
Alignment explanation
Indices: 9152697--9152739 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
9152687 GTTTGATAAA
*
9152697 TTGAAAAATTAAGTG
1 TTGAAAAATTAAGAG
9152712 TTGAACAAA-TAAGAG
1 TTGAA-AAATTAAGAG
*
9152727 TTGGAAAATTAAG
1 TTGAAAAATTAAG
9152740 TACTGAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 3 0.12
15 18 0.75
16 3 0.12
ACGTcount: A:0.49, C:0.02, G:0.21, T:0.28
Consensus pattern (15 bp):
TTGAAAAATTAAGAG
Found at i:9153189 original size:31 final size:31
Alignment explanation
Indices: 9153141--9153214 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
9153131 TAGAAAATAT
* *
9153141 TAAATTAATTTTAATTTATTAAAAAGTTGAGA
1 TAAATT-ATCTTAATTTATTAAAAAGTTGAAA
9153173 TAAATTATCTTAATTTATTAAAAAGTTGAAA
1 TAAATTATCTTAATTTATTAAAAAGTTGAAA
9153204 TAAATTATCTT
1 TAAATTATCTT
9153215 TTTTAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 34 0.85
32 6 0.15
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.45
Consensus pattern (31 bp):
TAAATTATCTTAATTTATTAAAAAGTTGAAA
Found at i:9153282 original size:21 final size:21
Alignment explanation
Indices: 9153257--9153323 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 21
9153247 TTATCCTCCA
9153257 AAATAATATAAAATATT-ATAT
1 AAATAATATAAAA-ATTAATAT
* *
9153278 TAATAAGATTAAAAATTAATAT
1 AAATAATA-TAAAAATTAATAT
9153300 AAATAATATTTTAAAAATTAATAT
1 AAATAATA---TAAAAATTAATAT
9153324 TTACTTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
21 9 0.24
22 15 0.39
24 14 0.37
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (21 bp):
AAATAATATAAAAATTAATAT
Found at i:9153304 original size:33 final size:31
Alignment explanation
Indices: 9153256--9153320 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 31
9153246 TTTATCCTCC
*
9153256 AAAATAATATAAAATATTATATTAATAAGATTA
1 AAAATAATATAAAATAATATATTAA-AA-ATTA
*
9153289 AAAATTAATAT-AAATAATATTTTAAAAATTA
1 AAAA-TAATATAAAATAATATATTAAAAATTA
9153320 A
1 A
9153321 TATTTACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 5 0.17
32 2 0.07
33 16 0.55
34 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (31 bp):
AAAATAATATAAAATAATATATTAAAAATTA
Found at i:9154312 original size:29 final size:31
Alignment explanation
Indices: 9154270--9154338 Score: 81
Period size: 32 Copynumber: 2.3 Consensus size: 31
9154260 GAGGAATACT
*
9154270 ATAATAATACTAATG-T-AATTGTAATAATA
1 ATAATAATACTAATGATAAATTATAATAATA
* *
9154299 ATAATATTATTAATGATCAAATTATAATAATA
1 ATAATAATACTAATGAT-AAATTATAATAATA
9154331 ATAA-AATA
1 ATAATAATA
9154339 AATAAGGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 13 0.39
30 1 0.03
31 3 0.09
32 16 0.48
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (31 bp):
ATAATAATACTAATGATAAATTATAATAATA
Found at i:9156293 original size:44 final size:44
Alignment explanation
Indices: 9156100--9156548 Score: 251
Period size: 44 Copynumber: 10.0 Consensus size: 44
9156090 ACTACAACTA
* * * ** *
9156100 TTGTAGTTTTAATCTACTCCACTACAACTTTATAGAGATGAGAC
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGAC
* * * * * *
9156144 TAGTAGCTTCAATCTGCTTCACTGCCACTTCAAGGAGATAAGATTC
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGA--C
* * * * * * *
9156190 GTTATGGTAGATTAAATAC-AATCTACTGCAGCTTTAGAGG-TATAGGA-
1 --T-T-GTAGCTTCAAT-CTACTCCACTGCAACTTTAG-GGAGATAAGAC
* * * *
9156237 TT-TAGTTTCAATCTACTCCACTACAACTTTAAGGAGATAAGGC
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGAC
* *
9156280 TTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAAC
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGAT-A-A---G--AC
* * * * *
9156331 TTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGAT
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGAC
* * * * * * * * *
9156375 TTTTGGCCTCAATATACTCCACTACAACTTCAAGGAGATTAGAT
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGAC
* * * * *
9156419 TTATAGCTTTAATCTGCTTCACTGTAACTTTAGGGAGATAAGAC
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGAC
* * * *
9156463 TTGTAACTTCAATCTTCTCCACTGCAACTTTAGGGAGATTAGAT
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGAC
* * * * *
9156507 TTATAGCTTTAATCTGCTCTATTGCAACTTTA-GGAGATAAGA
1 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGA
9156549 TTCACTATGG
Statistics
Matches: 301, Mismatches: 85, Indels: 39
0.71 0.20 0.09
Matches are distributed among these distances:
41 3 0.01
42 25 0.08
43 11 0.04
44 192 0.64
45 2 0.01
46 3 0.01
48 1 0.00
49 2 0.01
50 25 0.08
51 37 0.12
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (44 bp):
TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGAC
Found at i:9156355 original size:51 final size:51
Alignment explanation
Indices: 9156279--9156376 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 51
9156269 GGAGATAAGG
* * *
9156279 CTTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAA
1 CTTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAAATAAGATTTGTAA
* * *
9156330 CTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTT
1 CTTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAAATAAGATTT
9156377 TTGGCCTCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (51 bp):
CTTGTAACTTCAATCTACTCCACTGCAACTTCAGGGAAATAAGATTTGTAA
Found at i:9156483 original size:88 final size:88
Alignment explanation
Indices: 9156246--9156548 Score: 306
Period size: 88 Copynumber: 3.4 Consensus size: 88
9156236 ATTTAGTTTC
* * * * * *
9156246 AATCTACTCCACTACAACTTTAAGGAGATAAGGCTTGTAACTTCAATCTGCTCCACTGCAACTTT
1 AATCTGCTTCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAATCTACTCCACTGCAACTTT
*
9156311 AGGGAGATAAGATTTGTAACTTGTAGCTTT
66 AGGGAGATTAGA-TT-T-A----TAGCTTT
* * * * * ** * * *
9156341 AATCT-ATTCCACTGCAACTTCAGGGAAATAAGATTTTTGGCCTCAATATACTCCACTACAACTT
1 AATCTGCTT-CACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAATCTACTCCACTGCAACTT
* *
9156405 CAAGGAGATTAGATTTATAGCTTT
65 TAGGGAGATTAGATTTATAGCTTT
* *
9156429 AATCTGCTTCACTGTAACTTTAGGGAGATAAGACTTGTAACTTCAATCTTCTCCACTGCAACTTT
1 AATCTGCTTCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAATCTACTCCACTGCAACTTT
9156494 AGGGAGATTAGATTTATAGCTTT
66 AGGGAGATTAGATTTATAGCTTT
*
9156517 AATCTGC-TCTATTGCAACTTTA-GGAGATAAGA
1 AATCTGCTTC-ACTGCAACTTTAGGGAGATAAGA
9156549 TTCACTATGG
Statistics
Matches: 171, Mismatches: 34, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
87 12 0.07
88 95 0.56
89 2 0.01
92 1 0.01
93 1 0.01
94 3 0.02
95 57 0.33
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (88 bp):
AATCTGCTTCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAATCTACTCCACTGCAACTTT
AGGGAGATTAGATTTATAGCTTT
Found at i:9156844 original size:13 final size:13
Alignment explanation
Indices: 9156826--9156851 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9156816 AACGTATATG
9156826 AATGTATATGAAT
1 AATGTATATGAAT
9156839 AATGTATATGAAT
1 AATGTATATGAAT
9156852 GTTATTCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (13 bp):
AATGTATATGAAT
Found at i:9158791 original size:169 final size:169
Alignment explanation
Indices: 9158506--9158832 Score: 546
Period size: 169 Copynumber: 1.9 Consensus size: 169
9158496 TCAATTTGGG
* *
9158506 CCTTTGCCCAACCGGATATAGTTTCACAATTATATTAGAGCCTTGGCCCATACCAAATATAGAAT
1 CCTTTGCCCAACCGGATACAGTTTCACAATTATATTAGAGCCTTGGCCCATACCAAATACAGAAT
* *
9158571 GCAAACACAGTAAATCAGAATCCTACCCATCAGCCTCTACACACCATCTCCGTCCAGCCCTACAC
66 GCAAACACAGTAAATCAGAATCCTACCCACCAACCTCTACACACCATCTCCGTCCAGCCCTACAC
* *
9158636 ACCATGTGGGGATTAAATCAACCCACCCATCCCTACACA
131 ACCATGTGAGGATTAAATAAACCCACCCATCCCTACACA
* * * *
9158675 CCTTTGCCCAATCGGATACAGTTTCACAATTATATTAGAGTCTTGGCCCATATCAGATACAGAAT
1 CCTTTGCCCAACCGGATACAGTTTCACAATTATATTAGAGCCTTGGCCCATACCAAATACAGAAT
* *
9158740 GCAAACACAGTAAATCAGAATCCTACCCACCAACCTCTACACACTATCTCCGTCCAGGCCTACAC
66 GCAAACACAGTAAATCAGAATCCTACCCACCAACCTCTACACACCATCTCCGTCCAGCCCTACAC
9158805 ACCATGTGAGGATTAAATAAACCCACCC
131 ACCATGTGAGGATTAAATAAACCCACCC
9158833 TGATACAATG
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
169 146 1.00
ACGTcount: A:0.33, C:0.32, G:0.12, T:0.22
Consensus pattern (169 bp):
CCTTTGCCCAACCGGATACAGTTTCACAATTATATTAGAGCCTTGGCCCATACCAAATACAGAAT
GCAAACACAGTAAATCAGAATCCTACCCACCAACCTCTACACACCATCTCCGTCCAGCCCTACAC
ACCATGTGAGGATTAAATAAACCCACCCATCCCTACACA
Found at i:9170371 original size:4 final size:4
Alignment explanation
Indices: 9170354--9170392 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
9170344 TATAGATTGT
* *
9170354 ATAC ATAC AAAC ATAC ATAC ATAC ATTC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
9170393 TATATATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:9193387 original size:24 final size:24
Alignment explanation
Indices: 9193360--9193407 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
9193350 CTGATCTGGG
9193360 GCACTTATATTCAATATTTAATCT
1 GCACTTATATTCAATATTTAATCT
9193384 GCACTTATATTCAATATTTAATCT
1 GCACTTATATTCAATATTTAATCT
9193408 ATCTTTCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.04, T:0.46
Consensus pattern (24 bp):
GCACTTATATTCAATATTTAATCT
Found at i:9195138 original size:2 final size:2
Alignment explanation
Indices: 9195131--9195160 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9195121 GAATTTGAAT
*
9195131 TC TC TC TC TC TC TC TC TC TC TC CC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9195161 CCTGTACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:9209046 original size:21 final size:21
Alignment explanation
Indices: 9209022--9209061 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
9209012 CACCGGGCTT
9209022 CAACACCCTCA-CCATCTCCCC
1 CAACACCCTCATCC-TCTCCCC
9209043 CAACACCCTCATCCTCTCC
1 CAACACCCTCATCCTCTCC
9209062 GCCGCTGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.23, C:0.60, G:0.00, T:0.17
Consensus pattern (21 bp):
CAACACCCTCATCCTCTCCCC
Found at i:9210754 original size:28 final size:29
Alignment explanation
Indices: 9210692--9210746 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
9210682 TTTTAGATTA
9210692 TATTTTTTTAGAATTTATATACATATTTTG
1 TATTTTTTTA-AATTTATATACATATTTTG
9210722 TATTTTTTT-AATTT-TATA-ATATTTT
1 TATTTTTTTAAATTTATATACATATTTT
9210747 AATTATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 7 0.28
27 4 0.16
28 5 0.20
30 9 0.36
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (29 bp):
TATTTTTTTAAATTTATATACATATTTTG
Found at i:9213035 original size:81 final size:81
Alignment explanation
Indices: 9212942--9213094 Score: 297
Period size: 81 Copynumber: 1.9 Consensus size: 81
9212932 TATTAAAATA
*
9212942 TTGATAAAAATATAGATGAAATTATAAAATATTTCATTTAAAGAACAGTAAAAATTAGAAAATAT
1 TTGATAAAAATATAGATGAAATTATAAAATATTTCATTTAAAGAACAATAAAAATTAGAAAATAT
9213007 ATAGTCAGGCTCAATT
66 ATAGTCAGGCTCAATT
9213023 TTGATAAAAATATAGATGAAATTATAAAATATTTCATTTAAAGAACAATAAAAATTAGAAAATAT
1 TTGATAAAAATATAGATGAAATTATAAAATATTTCATTTAAAGAACAATAAAAATTAGAAAATAT
9213088 ATAGTCA
66 ATAGTCA
9213095 AGCTTAAAAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.32
Consensus pattern (81 bp):
TTGATAAAAATATAGATGAAATTATAAAATATTTCATTTAAAGAACAATAAAAATTAGAAAATAT
ATAGTCAGGCTCAATT
Found at i:9213437 original size:23 final size:22
Alignment explanation
Indices: 9213401--9213446 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
9213391 ATTATAATAA
*
9213401 TATTTAAAAAATTATATATTTT
1 TATTAAAAAAATTATATATTTT
*
9213423 TATTAAAAAATATTATGTATTTT
1 TATTAAAAAA-ATTATATATTTT
9213446 T
1 T
9213447 TTTTCTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTAAAAAAATTATATATTTT
Found at i:9213927 original size:24 final size:24
Alignment explanation
Indices: 9213900--9213951 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
9213890 TTAGTAAGTC
*
9213900 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
9213924 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
9213948 AAAT
1 AAAT
9213952 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:9215897 original size:24 final size:24
Alignment explanation
Indices: 9215870--9215921 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
9215860 TTAGTAAGTC
*
9215870 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* * *
9215894 AAATATATTATACTACTAAATACT
1 AAATAAACTATACTAATAAATACT
9215918 AAAT
1 AAAT
9215922 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:9216942 original size:16 final size:16
Alignment explanation
Indices: 9216923--9216953 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9216913 TTTCAATTTG
9216923 GACTGTAAATTGGACC
1 GACTGTAAATTGGACC
9216939 GACTGTAAATTGGAC
1 GACTGTAAATTGGAC
9216954 TGTTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (16 bp):
GACTGTAAATTGGACC
Found at i:9226062 original size:14 final size:15
Alignment explanation
Indices: 9226035--9226066 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
9226025 AATGATCATA
9226035 TTCCAAATTTTTTTC
1 TTCCAAATTTTTTTC
9226050 TTCCAAATTTTTTTC
1 TTCCAAATTTTTTTC
9226065 TT
1 TT
9226067 TCTTTCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (15 bp):
TTCCAAATTTTTTTC
Found at i:9227536 original size:20 final size:18
Alignment explanation
Indices: 9227495--9227538 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 18
9227485 TTTTTTTCGA
9227495 AATTTTATGATATTTAAT
1 AATTTTATGATATTTAAT
9227513 AATTTTGATAGAT-TTTATAT
1 AATTTT-AT-GATATTTA-AT
9227533 AATTTT
1 AATTTT
9227539 CAAAATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.26
19 6 0.26
20 11 0.48
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (18 bp):
AATTTTATGATATTTAAT
Found at i:9228285 original size:29 final size:25
Alignment explanation
Indices: 9228253--9228314 Score: 70
Period size: 30 Copynumber: 2.3 Consensus size: 25
9228243 AATTTCAAAT
9228253 AATTTATTTTCAATTATTTTATTTTTTAA
1 AATTTATTTTC-ATTA--TTA-TTTTTAA
*
9228282 AATTTTATTTTCATTATTATTTTTAT
1 AA-TTTATTTTCATTATTATTTTTAA
9228308 AATTTAT
1 AATTTAT
9228315 AAGTTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
25 5 0.16
26 8 0.26
27 3 0.10
29 6 0.19
30 9 0.29
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (25 bp):
AATTTATTTTCATTATTATTTTTAA
Found at i:9228772 original size:27 final size:27
Alignment explanation
Indices: 9228724--9228775 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
9228714 CTTTGAGAGT
* *
9228724 TTTTGAGAAATAATATTTTATATATAA
1 TTTTAAGAAATAATATTATATATATAA
9228751 TTTTAAGAAATAATGA-TATATATAT
1 TTTTAAGAAATAAT-ATTATATATAT
9228776 TTTTTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (27 bp):
TTTTAAGAAATAATATTATATATATAA
Found at i:9229279 original size:24 final size:24
Alignment explanation
Indices: 9229252--9229319 Score: 66
Period size: 27 Copynumber: 2.7 Consensus size: 24
9229242 ATAACTCTTT
9229252 TATGTATATAAATAAAATA-ATAAA
1 TATGTATATAAATAAAATATAT-AA
*
9229276 TATGTAATTATATAATAAAATATATAT
1 TATGT-A-TATA-AATAAAATATATAA
* *
9229303 TATATATAAAAATAAAA
1 TATGTATATAAATAAAA
9229320 GATTTATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
24 12 0.32
25 4 0.11
26 5 0.14
27 14 0.38
28 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (24 bp):
TATGTATATAAATAAAATATATAA
Found at i:9229292 original size:19 final size:19
Alignment explanation
Indices: 9229268--9229313 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
9229258 TATAAATAAA
*
9229268 ATAAT-AAATATGTAATTAT
1 ATAATAAAATATAT-ATTAT
9229287 ATAATAAAATATATATTAT
1 ATAATAAAATATATATTAT
9229306 AT-ATAAAA
1 ATAATAAAA
9229314 ATAAAAGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 6 0.24
19 12 0.48
20 7 0.28
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
ATAATAAAATATATATTAT
Found at i:9229327 original size:24 final size:22
Alignment explanation
Indices: 9229275--9229336 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 22
9229265 AAAATAATAA
* *
9229275 ATATGTAATTATATAATAAAATAT
1 ATAT-TAATTA-AAAATAAAAGAT
9229299 ATATTATATATAAAAATAAAAGAT
1 ATATTA-AT-TAAAAATAAAAGAT
*
9229323 TTATTAATTAAAAA
1 ATATTAATTAAAAA
9229337 GATAAATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 6 0.18
23 4 0.12
24 21 0.64
25 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (22 bp):
ATATTAATTAAAAATAAAAGAT
Found at i:9230876 original size:34 final size:35
Alignment explanation
Indices: 9230824--9230942 Score: 113
Period size: 34 Copynumber: 3.5 Consensus size: 35
9230814 AATATGAGAT
* *
9230824 ATTTATAATAGATTAATACGGTAACATTTAATATG
1 ATTTATAATAGATCAATACGGTAACAATTAATATG
9230859 ATTT-TAATAGATCAATACGGTAACAATTAATAT-
1 ATTTATAATAGATCAATACGGTAACAATTAATATG
* * **
9230892 ACTTATAACA-ATTCAATAAAGTAGA-AATTAATATG
1 ATTTATAATAGA-TCAATACGGTA-ACAATTAATATG
* *
9230927 -TTTATAACAAATCAAT
1 ATTTATAATAGATCAAT
9230943 TCAGTAGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
33 4 0.06
34 62 0.86
35 6 0.08
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.36
Consensus pattern (35 bp):
ATTTATAATAGATCAATACGGTAACAATTAATATG
Found at i:9233837 original size:11 final size:11
Alignment explanation
Indices: 9233813--9233855 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
9233803 TTCTAATACG
*
9233813 TATATATATTA
1 TATATATTTTA
*
9233824 TATGTATTTTA
1 TATATATTTTA
* *
9233835 TATATATTATG
1 TATATATTTTA
9233846 TATATATTTT
1 TATATATTTT
9233856 TAATGCCATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:9233990 original size:3 final size:3
Alignment explanation
Indices: 9233982--9234033 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
9233972 GATGTGTATA
* ** * *
9233982 TAT TAT TAT TACT AAT TAT TAT TAT TGC TAG TAT TAT TAT AAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9234028 TAT TAT
1 TAT TAT
9234034 GTTAGTGTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
3 37 0.95
4 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:9234003 original size:16 final size:15
Alignment explanation
Indices: 9233982--9234021 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
9233972 GATGTGTATA
*
9233982 TATTATTATTACTAAT
1 TATTATTATTACT-AG
*
9233998 TATTATTATTGCTAG
1 TATTATTATTACTAG
9234013 TATTATTAT
1 TATTATTAT
9234022 AATTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (15 bp):
TATTATTATTACTAG
Found at i:9234199 original size:23 final size:26
Alignment explanation
Indices: 9234171--9234226 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 26
9234161 TTTTTTTGTA
9234171 TATATTATTCAT-ACTA-T-CA-TTAT
1 TATATTATT-ATCACTATTACATTTAT
9234194 TATATTATTATCACTATTACATTTAT
1 TATATTATTATCACTATTACATTTAT
9234220 TATATTA
1 TATATTA
9234227 GTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 2 0.07
23 13 0.45
24 1 0.03
25 2 0.07
26 11 0.38
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.54
Consensus pattern (26 bp):
TATATTATTATCACTATTACATTTAT
Found at i:9234211 original size:17 final size:18
Alignment explanation
Indices: 9234185--9234222 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
9234175 TTATTCATAC
* *
9234185 TATCATTATTATA-TTAT
1 TATCACTATTACATTTAT
9234202 TATCACTATTACATTTAT
1 TATCACTATTACATTTAT
9234220 TAT
1 TAT
9234223 ATTAGTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (18 bp):
TATCACTATTACATTTAT
Found at i:9236007 original size:55 final size:55
Alignment explanation
Indices: 9235941--9236050 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
9235931 TTGCAATCAT
9235941 TTTATTCTTAAGTAATACAATACATTTGAGAGTATTTATTCAAATACGTGGTGTG
1 TTTATTCTTAAGTAATACAATACATTTGAGAGTATTTATTCAAATACGTGGTGTG
9235996 TTTATTCTTAAGTAATACAATACATTTGAGAGTATTTATTCAAATACGTGGTGTG
1 TTTATTCTTAAGTAATACAATACATTTGAGAGTATTTATTCAAATACGTGGTGTG
9236051 CTTAATTTTC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (55 bp):
TTTATTCTTAAGTAATACAATACATTTGAGAGTATTTATTCAAATACGTGGTGTG
Found at i:9253984 original size:9 final size:9
Alignment explanation
Indices: 9253967--9254003 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
9253957 TGAGTTTTCG
9253967 AATTCGAAT
1 AATTCGAAT
*
9253976 AACTCGAAT
1 AATTCGAAT
9253985 AATTCGAAT
1 AATTCGAAT
9253994 AATTCGAAT
1 AATTCGAAT
9254003 A
1 A
9254004 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:9255272 original size:25 final size:25
Alignment explanation
Indices: 9255238--9255289 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
9255228 TGATTTGGAG
*
9255238 AATGACTATTTCTTGGTAAAGTTCC
1 AATGAATATTTCTTGGTAAAGTTCC
*
9255263 AATGAATATTTCTTGGTCAAGTTCC
1 AATGAATATTTCTTGGTAAAGTTCC
9255288 AA
1 AA
9255290 AATGATGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (25 bp):
AATGAATATTTCTTGGTAAAGTTCC
Found at i:9259333 original size:46 final size:46
Alignment explanation
Indices: 9259273--9259500 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
9259263 TTTGACATGA
* * * * *
9259273 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** * *
9259319 TGCCATGGTATCTTTCAACTATGGTCTTGTTCATTTCATATTACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
9259365 TGCCATGGTATCTTTCAACCATGGTCTTACGCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
9259411 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
9259457 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
9259501 AGAGCACACT
Statistics
Matches: 167, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 163 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:9260680 original size:17 final size:17
Alignment explanation
Indices: 9260655--9260688 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9260645 ATAGGACTCC
*
9260655 AAAATTTTAAGAATTTT
1 AAAACTTTAAGAATTTT
9260672 AAAACTTTAAGAATTTT
1 AAAACTTTAAGAATTTT
9260689 TGGTTTATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (17 bp):
AAAACTTTAAGAATTTT
Found at i:9264800 original size:25 final size:26
Alignment explanation
Indices: 9264772--9264837 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 26
9264762 CACTACCGAT
9264772 CAGGATGCTCGTAGGA-ACCATATAA
1 CAGGATGCTCGTAGGAGACCATATAA
* ** *
9264797 CAGGAAGCTCG-A-GAGGGCTTATAA
1 CAGGATGCTCGTAGGAGACCATATAA
9264821 CAGGATGCTCGTAGGAG
1 CAGGATGCTCGTAGGAG
9264838 TTATGGTGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
23 2 0.06
24 17 0.52
25 11 0.33
26 3 0.09
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.18
Consensus pattern (26 bp):
CAGGATGCTCGTAGGAGACCATATAA
Found at i:9265174 original size:21 final size:21
Alignment explanation
Indices: 9265150--9265191 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9265140 AACTTAACAC
* *
9265150 CAATTTAATAAAATTCACATT
1 CAATTCAACAAAATTCACATT
*
9265171 CAATTCAACCAAATTCACATT
1 CAATTCAACAAAATTCACATT
9265192 TAGGCAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (21 bp):
CAATTCAACAAAATTCACATT
Found at i:9267570 original size:18 final size:19
Alignment explanation
Indices: 9267529--9267579 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
9267519 TTTTAGAATT
* *
9267529 ATTTTATATATTTTTTAGA
1 ATTTTATATATTTTTAAAA
*
9267548 TTTTTA-ATATTTTTAAAA
1 ATTTTATATATTTTTAAAA
9267566 ATTTTATA-ATTTTT
1 ATTTTATATATTTTT
9267580 TTCAAAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 21 0.78
19 6 0.22
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
ATTTTATATATTTTTAAAA
Found at i:9267609 original size:18 final size:19
Alignment explanation
Indices: 9267588--9267624 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9267578 TTTTCAAAAA
9267588 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
*
9267606 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
9267625 AAAAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:9277537 original size:19 final size:19
Alignment explanation
Indices: 9277513--9277552 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
9277503 TAGGTCTCAA
9277513 CAACATGAAGAGGCAAAAG
1 CAACATGAAGAGGCAAAAG
*
9277532 CAACATGAAGAGGTAAAAG
1 CAACATGAAGAGGCAAAAG
9277551 CA
1 CA
9277553 TTTATTGAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.15, G:0.25, T:0.07
Consensus pattern (19 bp):
CAACATGAAGAGGCAAAAG
Found at i:9282837 original size:13 final size:12
Alignment explanation
Indices: 9282783--9282843 Score: 50
Period size: 13 Copynumber: 4.8 Consensus size: 12
9282773 TTGGCTATGT
9282783 TTTTGAAAAGTAG
1 TTTTGAAAAGT-G
*
9282796 TTTTGAGAAGTG
1 TTTTGAAAAGTG
* *
9282808 TTGTGGAAAATTG
1 TT-TTGAAAAGTG
*
9282821 CTTTTGAGAAGTG
1 -TTTTGAAAAGTG
9282834 CTTTTGAAAA
1 -TTTTGAAAA
9282844 CTTTAGTTTA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 3 0.08
13 33 0.87
14 2 0.05
ACGTcount: A:0.31, C:0.03, G:0.26, T:0.39
Consensus pattern (12 bp):
TTTTGAAAAGTG
Found at i:9282842 original size:26 final size:25
Alignment explanation
Indices: 9282783--9282843 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
9282773 TTGGCTATGT
9282783 TTTTGAAAAGTAGTTTTGAGAAGTG
1 TTTTGAAAAGTAGTTTTGAGAAGTG
* *
9282808 TTGTGGAAAA-TTGCTTTTGAGAAGTG
1 TT-TTGAAAAGTAG-TTTTGAGAAGTG
9282834 CTTTTGAAAA
1 -TTTTGAAAA
9282844 CTTTAGTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 4 0.13
26 24 0.80
27 2 0.07
ACGTcount: A:0.31, C:0.03, G:0.26, T:0.39
Consensus pattern (25 bp):
TTTTGAAAAGTAGTTTTGAGAAGTG
Found at i:9292400 original size:14 final size:14
Alignment explanation
Indices: 9292376--9292412 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
9292366 TGCTACCACT
9292376 AAAAT-ATTTTTCA
1 AAAATAATTTTTCA
*
9292389 AAAATAATTTTTGA
1 AAAATAATTTTTCA
9292403 AAAATAATTT
1 AAAATAATTT
9292413 ATTTTTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (14 bp):
AAAATAATTTTTCA
Found at i:9292547 original size:20 final size:20
Alignment explanation
Indices: 9292524--9292563 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
9292514 CTATTTTTAA
9292524 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
9292544 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
9292564 TTTAAATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:9292568 original size:16 final size:18
Alignment explanation
Indices: 9292519--9292563 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
9292509 AAAAACTATT
* *
9292519 TTTAAATATATTAATAAA
1 TTTATATATTTTAATAAA
9292537 TTTATATATATATTAATAAA
1 TTTATATAT-T-TTAATAAA
9292557 TTTATAT
1 TTTATAT
9292564 TTTAAATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATTTTAATAAA
Found at i:9293423 original size:15 final size:15
Alignment explanation
Indices: 9293403--9293454 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
9293393 ACCAGAAAAC
9293403 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
9293418 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
9293437 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
9293452 ATT
1 ATT
9293455 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:9293525 original size:13 final size:13
Alignment explanation
Indices: 9293483--9293528 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
9293473 TAATAGATCA
*
9293483 AAAATATTATTTA
1 AAAATATTATTTT
9293496 AAAATATTATTTCT
1 AAAATATTATTT-T
9293510 AAAAT-TTATTATT
1 AAAATATTATT-TT
9293523 AAAATA
1 AAAATA
9293529 AAATTAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 23 0.79
14 6 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (13 bp):
AAAATATTATTTT
Found at i:9293556 original size:20 final size:20
Alignment explanation
Indices: 9293531--9293570 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9293521 TTAAAATAAA
*
9293531 ATTAAAATATTAAATAATTT
1 ATTAAAATAATAAATAATTT
*
9293551 ATTAAAATAATAAATTATTT
1 ATTAAAATAATAAATAATTT
9293571 TAATAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAAAATAATAAATAATTT
Found at i:9293563 original size:34 final size:33
Alignment explanation
Indices: 9293518--9293656 Score: 91
Period size: 29 Copynumber: 4.3 Consensus size: 33
9293508 CTAAAATTTA
9293518 TTATTAAAAT-A-AAATTAAAATATTAAATAAT
1 TTATTAAAATAATAAATTAAAATATTAAATAAT
*
9293549 TTATTAAAATAATAAATT---AT-TTTAATAAT
1 TTATTAAAATAATAAATTAAAATATTAAATAAT
*
9293578 TTATT-ATATGAATAAA-TATAAATAATTAAATATAT
1 TTATTAAAAT-AATAAATTA-AAAT-ATTAAATA-AT
* * *
9293613 ATTTTTAATAATATTTTAAATTAAAATTTTAAAT-AT
1 -TTATTAA-AATA--ATAAATTAAAATATTAAATAAT
9293649 TT-TTAAAA
1 TTATTAAAA
9293657 ATAAAAGTAA
Statistics
Matches: 85, Mismatches: 7, Indels: 30
0.70 0.06 0.25
Matches are distributed among these distances:
28 4 0.05
29 19 0.22
30 2 0.02
31 10 0.12
32 3 0.04
33 7 0.08
34 10 0.12
35 4 0.05
36 6 0.07
37 2 0.02
38 8 0.09
39 8 0.09
40 2 0.02
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (33 bp):
TTATTAAAATAATAAATTAAAATATTAAATAAT
Found at i:9293591 original size:16 final size:15
Alignment explanation
Indices: 9293543--9293592 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
9293533 TAAAATATTA
*
9293543 AATAATTTATTAAAAT
1 AATAATTTATT-ATAT
*
9293559 AATAAATTATT-T-T
1 AATAATTTATTATAT
9293572 AATAATTTATTATAT
1 AATAATTTATTATAT
9293587 GAATAA
1 -AATAA
9293593 ATATAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 11 0.39
14 1 0.04
15 1 0.04
16 15 0.54
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
AATAATTTATTATAT
Found at i:9295608 original size:14 final size:13
Alignment explanation
Indices: 9295589--9295618 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
9295579 CTGCAATATC
9295589 ATGTATGTATGTGT
1 ATGTATGTAT-TGT
9295603 ATGTATGTATTGT
1 ATGTATGTATTGT
9295616 ATG
1 ATG
9295619 CCAACTATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (13 bp):
ATGTATGTATTGT
Found at i:9296624 original size:15 final size:15
Alignment explanation
Indices: 9296604--9296637 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9296594 GAATTGAACA
9296604 AAATTTAGAA-CACAC
1 AAATTTAGAATC-CAC
9296619 AAATTTAGAATCCAC
1 AAATTTAGAATCCAC
9296634 AAAT
1 AAAT
9296638 ATAATAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.94
16 1 0.06
ACGTcount: A:0.53, C:0.18, G:0.06, T:0.24
Consensus pattern (15 bp):
AAATTTAGAATCCAC
Found at i:9300841 original size:18 final size:20
Alignment explanation
Indices: 9300806--9300844 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
9300796 AAATTTTATC
*
9300806 AATTTGTAAAACATTATTAA
1 AATTTATAAAACATTATTAA
9300826 AATTTATAAAA-A-TATTAA
1 AATTTATAAAACATTATTAA
9300844 A
1 A
9300845 TAAAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 10 0.56
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (20 bp):
AATTTATAAAACATTATTAA
Found at i:9300849 original size:13 final size:13
Alignment explanation
Indices: 9300831--9300871 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
9300821 ATTAAAATTT
*
9300831 ATAAAAATATTAA
1 ATAAAAATAATAA
*
9300844 ATAAAATTAATAA
1 ATAAAAATAATAA
9300857 ATAATAAATAATAA
1 ATAA-AAATAATAA
9300871 A
1 A
9300872 AATCATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
ATAAAAATAATAA
Found at i:9300861 original size:7 final size:7
Alignment explanation
Indices: 9300831--9300871 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
9300821 ATTAAAATTT
9300831 ATAA-AA
1 ATAATAA
*
9300837 ATATTAA
1 ATAATAA
9300844 ATAA-AA
1 ATAATAA
*
9300850 TTAATAA
1 ATAATAA
9300857 ATAATAA
1 ATAATAA
9300864 ATAATAA
1 ATAATAA
9300871 A
1 A
9300872 AATCATTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
6 8 0.28
7 21 0.72
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAATAA
Found at i:9302478 original size:21 final size:21
Alignment explanation
Indices: 9302443--9302519 Score: 75
Period size: 21 Copynumber: 3.7 Consensus size: 21
9302433 GTGTGGATCT
**
9302443 ACACGCCCATGTGAAGGCAAC
1 ACACGCCTGTGTGAAGGCAAC
* *
9302464 ACATGCCTGTGTGAAGGCCAC
1 ACACGCCTGTGTGAAGGCAAC
* *
9302485 ACACGCCCGTGTGGAGAG-AAC
1 ACACGCCTGTGTGAAG-GCAAC
*
9302506 ACACGCCTATGTGA
1 ACACGCCTGTGTGA
9302520 GCAGCCCGTG
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
21 43 0.98
22 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.27, T:0.14
Consensus pattern (21 bp):
ACACGCCTGTGTGAAGGCAAC
Found at i:9305376 original size:25 final size:26
Alignment explanation
Indices: 9305327--9305381 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
9305317 AATGATGACG
9305327 AAAACAATAATAATATCAATAGTA-T
1 AAAACAATAATAATATCAATAGTATT
* *
9305352 AAAACGATAATAATA-CATATGGTATT
1 AAAACAATAATAATATCA-ATAGTATT
9305378 AAAA
1 AAAA
9305382 TATCTATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 19 0.73
26 5 0.19
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.27
Consensus pattern (26 bp):
AAAACAATAATAATATCAATAGTATT
Found at i:9310597 original size:10 final size:10
Alignment explanation
Indices: 9310582--9310608 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9310572 TTTTATAAAT
9310582 TTATAAAGCA
1 TTATAAAGCA
9310592 TTATAAAGCA
1 TTATAAAGCA
9310602 TTATAAA
1 TTATAAA
9310609 AATATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (10 bp):
TTATAAAGCA
Found at i:9312521 original size:55 final size:55
Alignment explanation
Indices: 9312432--9312538 Score: 196
Period size: 55 Copynumber: 1.9 Consensus size: 55
9312422 CTCTTTTAGA
*
9312432 AAAAAATAGACTTTTATTTCTTAGTTGATATATCGATTTCTTATTTCTAATGTCT
1 AAAAAATAGAATTTTATTTCTTAGTTGATATATCGATTTCTTATTTCTAATGTCT
*
9312487 AAAAGATAGAATTTTATTTCTTAGTTGATATATCGATTTCTTATTTCTAATG
1 AAAAAATAGAATTTTATTTCTTAGTTGATATATCGATTTCTTATTTCTAATG
9312539 ATTTGATTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (55 bp):
AAAAAATAGAATTTTATTTCTTAGTTGATATATCGATTTCTTATTTCTAATGTCT
Found at i:9316803 original size:23 final size:23
Alignment explanation
Indices: 9316775--9316820 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
9316765 ACAACAGGCA
9316775 TTTCAACAATATCTTTTTTTTAT
1 TTTCAACAATATCTTTTTTTTAT
9316798 TTTCAACAATATCTTTTTTTTAT
1 TTTCAACAATATCTTTTTTTTAT
9316821 ATACAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTCAACAATATCTTTTTTTTAT
Found at i:9317760 original size:23 final size:23
Alignment explanation
Indices: 9317710--9317770 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
9317700 TGCCTTTAGA
* *
9317710 TTAAATTAATTAATGATTAATGT
1 TTAATTTAATTAATAATTAATGT
9317733 TTAATTTAATTAATTAATTAA-GT
1 TTAATTTAATTAA-TAATTAATGT
9317756 TTAATTATAAATTAA
1 TTAATT-T-AATTAA
9317771 ACTAATCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 20 0.61
24 7 0.21
25 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (23 bp):
TTAATTTAATTAATAATTAATGT
Found at i:9317768 original size:17 final size:17
Alignment explanation
Indices: 9317733--9317770 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
9317723 TGATTAATGT
*
9317733 TTAATTTAATTAATTAA
1 TTAATTTAATTAATAAA
9317750 TTAAGTTTAATT-ATAAA
1 TTAA-TTTAATTAATAAA
9317767 TTAA
1 TTAA
9317771 ACTAATCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TTAATTTAATTAATAAA
Found at i:9325996 original size:18 final size:18
Alignment explanation
Indices: 9325973--9326008 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
9325963 GTTAGAAGTT
9325973 GAATGCGTTTTTAGATTC
1 GAATGCGTTTTTAGATTC
9325991 GAATGCGTTTTTAGATTC
1 GAATGCGTTTTTAGATTC
9326009 AAATATTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (18 bp):
GAATGCGTTTTTAGATTC
Found at i:9326867 original size:50 final size:50
Alignment explanation
Indices: 9326809--9326910 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
9326799 TGTTAAATTT
9326809 AATACCCCTTAACCTACCCTTGAGTCGTGCAAATCGAATCAAACCCCTCG
1 AATACCCCTTAACCTACCCTTGAGTCGTGCAAATCGAATCAAACCCCTCG
*
9326859 AATACCCCTTAACCTACTCTTGAGTCGTGCAAATCGAATCAAACCCCTCG
1 AATACCCCTTAACCTACCCTTGAGTCGTGCAAATCGAATCAAACCCCTCG
9326909 AA
1 AA
9326911 ACACTTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.31, C:0.34, G:0.12, T:0.23
Consensus pattern (50 bp):
AATACCCCTTAACCTACCCTTGAGTCGTGCAAATCGAATCAAACCCCTCG
Found at i:9329384 original size:23 final size:25
Alignment explanation
Indices: 9329358--9329404 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
9329348 TATCATTCAT
*
9329358 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
9329381 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
9329405 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:9329727 original size:46 final size:46
Alignment explanation
Indices: 9329675--9330060 Score: 455
Period size: 46 Copynumber: 8.7 Consensus size: 46
9329665 TGTCATAGTG
* ** * *
9329675 TCTTTCAACTATGGTCTTACTTATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
**** * *
9329721 TCTTTCAACCATGGTCTTATTTTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
9329767 TCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
**** * *
9329813 TCTTTCAACCATGGTCTTATTTTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
9329859 TCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
9329905 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGATA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
9329951 TCTTTCAATCATGGTCTT--ACA---C--A-CAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
9329989 TCTTTCAACCATGGTCTT--ACA---C--A-CAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
9330027 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
9330061 AGAGCACACT
Statistics
Matches: 301, Mismatches: 30, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
38 69 0.23
39 1 0.00
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 5 0.02
46 218 0.72
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:9329991 original size:38 final size:38
Alignment explanation
Indices: 9329936--9330049 Score: 210
Period size: 38 Copynumber: 3.0 Consensus size: 38
9329926 CATTTCATAT
* *
9329936 CAGGTTGCCATGATATCTTTCAATCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
9329974 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
9330012 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
9330050 TTTCATATCA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 74 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:9332895 original size:43 final size:43
Alignment explanation
Indices: 9332847--9332932 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
9332837 TTTCTAAGAA
9332847 AAAAACAAAAGCTTTTGAAACTTTTATACATTTGACTATCAAT
1 AAAAACAAAAGCTTTTGAAACTTTTATACATTTGACTATCAAT
9332890 AAAAACAAAAGCTTTTGAAACTTTTATACATTTGACTATCAAT
1 AAAAACAAAAGCTTTTGAAACTTTTATACATTTGACTATCAAT
9332933 TACAAGTAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (43 bp):
AAAAACAAAAGCTTTTGAAACTTTTATACATTTGACTATCAAT
Found at i:9334115 original size:11 final size:11
Alignment explanation
Indices: 9334089--9334143 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
9334079 AAACATAATA
9334089 ATAGTAT-TAC
1 ATAGTATATAC
*
9334099 AAAGTATATAC
1 ATAGTATATAC
9334110 ATAGTAT-TA-
1 ATAGTATATAC
* *
9334119 AAAATATATAC
1 ATAGTATATAC
*
9334130 ATAATATATAC
1 ATAGTATATAC
9334141 ATA
1 ATA
9334144 TTAGAAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
9 5 0.14
10 10 0.27
11 22 0.59
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (11 bp):
ATAGTATATAC
Found at i:9334128 original size:20 final size:21
Alignment explanation
Indices: 9334089--9334141 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
9334079 AAACATAATA
*
9334089 ATAGTATTACAAAGTATATAC
1 ATAGTATTACAAAATATATAC
9334110 ATAGTATTA-AAAATATATAC
1 ATAGTATTACAAAATATATAC
*
9334130 ATAATATATACA
1 ATAGTAT-TACA
9334142 TATTAGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 16 0.57
21 11 0.39
22 1 0.04
ACGTcount: A:0.53, C:0.08, G:0.06, T:0.34
Consensus pattern (21 bp):
ATAGTATTACAAAATATATAC
Found at i:9334138 original size:31 final size:29
Alignment explanation
Indices: 9334103--9334225 Score: 83
Period size: 31 Copynumber: 4.1 Consensus size: 29
9334093 TATTACAAAG
9334103 TATATACATAGTATTAAAAATATATACATAA
1 TATATACATA-TATTAAAAATA-ATACATAA
*
9334134 TATATAC--ATATTAGAAATAATA-ATAA
1 TATATACATATATTAAAAATAATACATAA
* * *
9334160 TATTAAAAACA-ACTATTAATAATACTACATAAA
1 TA-T--ATACATA-TATTAAAAATAATACAT-AA
* *
9334193 TATACACATATATATTAAAATATATACATAA
1 TATATACATATAT-TAAAAATA-ATACATAA
9334224 TA
1 TA
9334226 ATGATATTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 20
0.72 0.09 0.20
Matches are distributed among these distances:
26 6 0.08
27 4 0.05
28 10 0.14
29 4 0.05
30 8 0.11
31 29 0.40
32 8 0.11
33 4 0.05
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (29 bp):
TATATACATATATTAAAAATAATACATAA
Found at i:9334224 original size:70 final size:67
Alignment explanation
Indices: 9334057--9334237 Score: 172
Period size: 70 Copynumber: 2.7 Consensus size: 67
9334047 ACCTATATAC
* * * ** * *
9334057 ATACATATATATATTAAAATATAAACATAATAATAGTATTACAAAGTATATACATAGTATTAAAA
1 ATACACATATATATTAAAATATAAACATAATAATAATATTAAAAACAATATACATAATACTAAAA
9334122 AT
66 AT
* *
9334124 ATATACATA-ATA-TATACATATTAGAA-ATAATAATAATATTAAAAACAACTATTA-ATAATAC
1 ATACACATATATATTA-AAATA-TA-AACATAATAATAATATTAAAAACAA-TA-TACATAATAC
9334185 TACATAAAT
61 TA-A-AAAT
* *
9334194 ATACACATATATATTAAAATATATACATAATAATGATATTAAAA
1 ATACACATATATATTAAAATATAAACATAATAATAATATTAAAA
9334238 GTAGGTACGT
Statistics
Matches: 91, Mismatches: 13, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
65 2 0.02
66 7 0.08
67 27 0.30
68 11 0.12
69 4 0.04
70 31 0.34
71 7 0.08
72 2 0.02
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (67 bp):
ATACACATATATATTAAAATATAAACATAATAATAATATTAAAAACAATATACATAATACTAAAA
AT
Found at i:9334299 original size:26 final size:26
Alignment explanation
Indices: 9334270--9334319 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
9334260 AAAATACATA
9334270 ATATAATAAAATATATGA-ATAATACG
1 ATATAA-AAAATATATGACATAATACG
* *
9334296 ATATTAAAAATATATTACATAATA
1 ATATAAAAAATATATGACATAATA
9334320 TATAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (26 bp):
ATATAAAAAATATATGACATAATACG
Found at i:9334347 original size:13 final size:15
Alignment explanation
Indices: 9334314--9334365 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
9334304 AATATATTAC
9334314 ATAATATATAAAAAT
1 ATAATATATAAAAAT
*
9334329 ATAATATTTAAAAA-
1 ATAATATATAAAAAT
*
9334343 A-AATAATATACATAAT
1 ATAAT-ATATA-AAAAT
9334359 ATAATAT
1 ATAATAT
9334366 TAATATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
13 3 0.10
14 5 0.17
15 16 0.53
16 3 0.10
17 3 0.10
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAATATATAAAAAT
Found at i:9334770 original size:3 final size:3
Alignment explanation
Indices: 9334762--9334925 Score: 64
Period size: 3 Copynumber: 55.0 Consensus size: 3
9334752 ATTAACAATG
* * * *
9334762 ATA ATA ATA ATA GTA ATA ATA TTA A-A AT- ATA A-A A-A AGA ACA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
9334805 ATA ATA TATA AAA ATA ATA A-A GTA ATTA A-A A-A ATA ATA CT- ATA
1 ATA ATA -ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* *
9334848 TATA A-A TATA TATA CAT- ATA CATA GATA ATA AAA AT- ATA CACTA CTA
1 -ATA ATA -ATA -ATA -ATA ATA -ATA -ATA ATA ATA ATA ATA -A-TA ATA
9334895 TATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9334926 TTGAAATACA
Statistics
Matches: 125, Mismatches: 18, Indels: 36
0.70 0.10 0.20
Matches are distributed among these distances:
2 21 0.17
3 77 0.62
4 25 0.20
5 2 0.02
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:9334896 original size:29 final size:29
Alignment explanation
Indices: 9334837--9334913 Score: 68
Period size: 29 Copynumber: 2.6 Consensus size: 29
9334827 TAATTAAAAA
* * *
9334837 ATAATACTATATATAAATATATATACATAT
1 ATAATAATA-ATAAAAATATACATACATAT
*
9334867 A-CATAGATAATAAAAATATACACTAC-TAT
1 ATAATA-ATAATAAAAATATACA-TACATAT
*
9334896 ATAATAATAATAATAATA
1 ATAATAATAATAAAAATA
9334914 ATAATAATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
29 29 0.76
30 9 0.24
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.34
Consensus pattern (29 bp):
ATAATAATAATAAAAATATACATACATAT
Found at i:9334951 original size:143 final size:139
Alignment explanation
Indices: 9334659--9335053 Score: 411
Period size: 141 Copynumber: 2.8 Consensus size: 139
9334649 AAAGGAAAGT
* * * ** *
9334659 GTATAATATAATAATAATATTAAAATAAGGTAATAAAAAATACTACTATATAAATGCATATATAT
1 GTATAATAT-ATAAAAATAATAAAGTAA--TAA-AAAAAATACTA-TATATAAATATATATACAT
* ** * * *
9334724 ATACATATATAACAAAAACATTTACTATAT-TAACAATGATAATAATAATAGTAATAATATTAAA
61 ATACATATATAATAAAAA-ATACACTATATATAATAATAATAATAATAATAATAATAATATTAAA
*
9334788 ATATAAAAAAGAACA
125 ATACAAAAAAGAACA
*
9334803 ATATAATATATAAAAATAATAAAGTAATTAAAAAATAATACTATATATAAATATATATACATATA
1 GTATAATATATAAAAATAATAAAGTAA-TAAAAAA-AATACTATATATAAATATATATACATATA
* *
9334868 CATAGATAATAAAAATATACACTACTATATAATAATAATAATAATAATAATAATAATATTGAAAT
64 CATATATAATAAAAA-ATACACTA-TATATAATAATAATAATAATAATAATAATAATATTAAAAT
**
9334933 ACAAAAAA-ATGTA
127 ACAAAAAAGA-ACA
* * *
9334946 GTATAATA-A-AAATATTTAAATAAAGTAATAAAAAAAATACTATGTATAAAAATATATACATAT
1 GTATAATATATAAA-A-AT-AATAAAGTAATAAAAAAAATACTATATATAAATATATATACATAT
* * *
9335009 ACATATATAGTAAAAAATACACTAATATATAATACTAATACTAAT
63 ACATATATAATAAAAAATACACT-ATATATAATAATAATAATAAT
9335054 TCATTAATAA
Statistics
Matches: 215, Mismatches: 28, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
141 70 0.33
142 57 0.27
143 70 0.33
144 18 0.08
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (139 bp):
GTATAATATATAAAAATAATAAAGTAATAAAAAAAATACTATATATAAATATATATACATATACA
TATATAATAAAAAATACACTATATATAATAATAATAATAATAATAATAATAATATTAAAATACAA
AAAAGAACA
Found at i:9335188 original size:3 final size:3
Alignment explanation
Indices: 9335058--9335173 Score: 60
Period size: 3 Copynumber: 38.0 Consensus size: 3
9335048 ACTAATTCAT
* * **
9335058 TAA TAA AAA TAA TAA GAA T-A TGT TAA TAA TAA TAAA TAAA TGAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA T-AA T-AA T-AA
* * * * * *
9335106 TAAA TACA CAA AAA TAA -AA T-A TAA TTA TAA TAG TAA TAT TAA CAA
1 T-AA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9335151 -AA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
9335174 GTTAAAGTAA
Statistics
Matches: 88, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
2 8 0.09
3 61 0.69
4 19 0.22
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:9338596 original size:15 final size:15
Alignment explanation
Indices: 9338578--9338611 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
9338568 AATTTATCTT
9338578 TTAATTTATTATAAA
1 TTAATTTATTATAAA
9338593 TTAATTTATTATAAA
1 TTAATTTATTATAAA
9338608 TTAA
1 TTAA
9338612 AATAATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTAATTTATTATAAA
Found at i:9338910 original size:19 final size:19
Alignment explanation
Indices: 9338886--9338930 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
9338876 AATAGGTCTT
*
9338886 AAATTTATAATTTAATATA
1 AAATTTATAATTTAAAATA
*
9338905 AAATTT-TTATTTAAAATA
1 AAATTTATAATTTAAAATA
9338923 ATAATTTA
1 A-AATTTA
9338931 AAATATCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATTTATAATTTAAAATA
Found at i:9350522 original size:16 final size:16
Alignment explanation
Indices: 9350501--9350531 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9350491 TATTCCAATT
9350501 TTGTCCATAAAATTTC
1 TTGTCCATAAAATTTC
9350517 TTGTCCATAAAATTT
1 TTGTCCATAAAATTT
9350532 TAGATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.45
Consensus pattern (16 bp):
TTGTCCATAAAATTTC
Found at i:9355198 original size:32 final size:32
Alignment explanation
Indices: 9355140--9355210 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
9355130 TCGTTGGATT
*
9355140 TTGAAATTATTATGTCTTGAATTTGTTACATA
1 TTGAAATTATTATGTCTTGAACTTGTTACATA
* * **
9355172 TTGAATTTATTATGT-TTTAAGCTTGTTGGATA
1 TTGAAATTATTATGTCTTGAA-CTTGTTACATA
9355204 TTGAAAT
1 TTGAAAT
9355211 GATTGACAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 4 0.12
32 28 0.88
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (32 bp):
TTGAAATTATTATGTCTTGAACTTGTTACATA
Found at i:9356433 original size:14 final size:14
Alignment explanation
Indices: 9356414--9356447 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9356404 AACAATTTAA
9356414 AATATAAACTTATT
1 AATATAAACTTATT
* *
9356428 AATATATATTTATT
1 AATATAAACTTATT
9356442 AATATA
1 AATATA
9356448 TGTAAAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
AATATAAACTTATT
Found at i:9360798 original size:14 final size:14
Alignment explanation
Indices: 9360779--9360806 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9360769 TAAATACTTG
9360779 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
9360793 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
9360807 CTTGTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Done.