Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 33 of 316
Found at i:9365055 original size:45 final size:45
Alignment explanation
Indices: 9364999--9365091 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
9364989 CCCACTGCGA
* *
9364999 ATCACATAGCCTCACTGCCCACGCCAGTGATTGACCCACATCACC
1 ATCACAAAGCCTCACTGCCCACGCCAGTGACTGACCCACATCACC
*
9365044 ATCACAAAGCCTCACTGCCCACGCCAGTGGCTGACCCACATCACC
1 ATCACAAAGCCTCACTGCCCACGCCAGTGACTGACCCACATCACC
9365089 ATC
1 ATC
9365092 CTCGACGATC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.43, G:0.14, T:0.16
Consensus pattern (45 bp):
ATCACAAAGCCTCACTGCCCACGCCAGTGACTGACCCACATCACC
Found at i:9371864 original size:21 final size:21
Alignment explanation
Indices: 9371835--9371875 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9371825 TTTTTTTGCC
* * *
9371835 TCTGTTTCCCTTGCTGCTGCG
1 TCTGCTTCCCTCGCTACTGCG
9371856 TCTGCTTCCCTCGCTACTGC
1 TCTGCTTCCCTCGCTACTGC
9371876 TTTTATTGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.02, C:0.39, G:0.20, T:0.39
Consensus pattern (21 bp):
TCTGCTTCCCTCGCTACTGCG
Found at i:9384055 original size:9 final size:9
Alignment explanation
Indices: 9384043--9384067 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9384033 AATAATCTAT
9384043 ATTTTTATA
1 ATTTTTATA
9384052 ATTTTTATA
1 ATTTTTATA
9384061 ATTTTTA
1 ATTTTTA
9384068 AAAGATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
ATTTTTATA
Found at i:9385193 original size:16 final size:16
Alignment explanation
Indices: 9385172--9385202 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9385162 CATTATAAAC
9385172 CATATAAATTTGAAAG
1 CATATAAATTTGAAAG
*
9385188 CATATATATTTGAAA
1 CATATAAATTTGAAA
9385203 CTCTTTCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAG
Found at i:9395270 original size:18 final size:18
Alignment explanation
Indices: 9395247--9395287 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
9395237 GTTCAAAGCG
9395247 TAATTAATTTAAATTT-TT
1 TAATTAA-TTAAATTTATT
9395265 TAATTAATTAAATTTATT
1 TAATTAATTAAATTTATT
9395283 TAATT
1 TAATT
9395288 GAAACTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TAATTAATTAAATTTATT
Found at i:9400845 original size:54 final size:54
Alignment explanation
Indices: 9400763--9400871 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
9400753 TCCTGTCTGA
9400763 AATGATTAACAAGGTGTCCAATTATCACCCTATTTAGATCTATGGTGATAAGCT
1 AATGATTAACAAGGTGTCCAATTATCACCCTATTTAGATCTATGGTGATAAGCT
9400817 AATGATTAACAAGGTGTCCAATTATCACCCTATTTAGATCTATGGTGATAAGCT
1 AATGATTAACAAGGTGTCCAATTATCACCCTATTTAGATCTATGGTGATAAGCT
9400871 A
1 A
9400872 CTTGGCCAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (54 bp):
AATGATTAACAAGGTGTCCAATTATCACCCTATTTAGATCTATGGTGATAAGCT
Found at i:9403027 original size:32 final size:32
Alignment explanation
Indices: 9402966--9403028 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
9402956 ATGCATGGAT
**
9402966 TTTCTCAAATTTTATATAATACATATATTTAA
1 TTTCTCAAATTCCATATAATACATATATTTAA
*
9402998 TTTCTCAAATTCCATTTAAATACAT-TATTTA
1 TTTCTCAAATTCCATAT-AATACATATATTTA
9403029 TCATTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 20 0.74
33 7 0.26
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (32 bp):
TTTCTCAAATTCCATATAATACATATATTTAA
Found at i:9404077 original size:51 final size:51
Alignment explanation
Indices: 9403973--9404272 Score: 449
Period size: 51 Copynumber: 6.0 Consensus size: 51
9403963 CTGAAATTAA
9403973 GACATAGTTTTGCCATTGTGTAAGGAACACACAGCCTTTCAGGACCCCTAATT
1 GACATAGTTTTGCCATTGTGTAAGG-A-ACACAGCCTTTCAGGACCCCTAATT
*
9404026 GACATAGTTTTGCCATTGTGTAAAGAACACAGCCTTTCAGGACCCCTAATT
1 GACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCCCTAATT
*
9404077 GACATAGTTTTGCCACTGTGTAAGG---A-A------CAGGACCCCTAATT
1 GACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCCCTAATT
* *
9404118 GACATAGTTTTGCCACTGTGTAAGGAACACAGCCTTTCAGGAACCCTAATT
1 GACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCCCTAATT
9404169 GACATAGTTTTGCCATTGTGTAAGGAACACACAGCCTTTCAGGACCCCTAATT
1 GACATAGTTTTGCCATTGTGTAAGG-A-ACACAGCCTTTCAGGACCCCTAATT
*
9404222 GACATAGTTTTGCCATTGTGCAAGGAACACAGCCTTTCAGGACCCCTAATT
1 GACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCCCTAATT
9404273 TTCCCATGGA
Statistics
Matches: 228, Mismatches: 7, Indels: 26
0.87 0.03 0.10
Matches are distributed among these distances:
41 39 0.17
44 1 0.00
45 1 0.00
47 1 0.00
48 1 0.00
51 110 0.48
52 3 0.01
53 72 0.32
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (51 bp):
GACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCCCTAATT
Found at i:9404120 original size:41 final size:41
Alignment explanation
Indices: 9404063--9404146 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
9404053 CACAGCCTTT
9404063 CAGGACCCCTAATTGACATAGTTTTGCCACTGTGTAAGGAA
1 CAGGACCCCTAATTGACATAGTTTTGCCACTGTGTAAGGAA
9404104 CAGGACCCCTAATTGACATAGTTTTGCCACTGTGTAAGGAA
1 CAGGACCCCTAATTGACATAGTTTTGCCACTGTGTAAGGAA
9404145 CA
1 CA
9404147 CAGCCTTTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (41 bp):
CAGGACCCCTAATTGACATAGTTTTGCCACTGTGTAAGGAA
Found at i:9404169 original size:92 final size:95
Alignment explanation
Indices: 9404011--9404272 Score: 377
Period size: 92 Copynumber: 2.7 Consensus size: 95
9404001 ACACAGCCTT
*
9404011 TCAGGACCCCTAATTGACATAGTTTTGCCATTGTGTAAAGAACACAGCCTTTCAGGACCCCTAAT
1 TCAGGACCCCTAATTGACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCCCTAAT
9404076 TGACATAGTTTTGCCACTGTGTAAGG-A-A
66 TGACATAGTTTTGCCACTGTGTAAGGAACA
* *
9404104 -CAGGACCCCTAATTGACATAGTTTTGCCACTGTGTAAGGAACACAGCCTTTCAGGAACCCTAAT
1 TCAGGACCCCTAATTGACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCCCTAAT
*
9404168 TGACATAGTTTTGCCATTGTGTAAGGAACACACA
66 TGACATAGTTTTGCCACTGTGTAAGG---A-ACA
*
9404202 GCCTTTCAGGACCCCTAATTGACATAGTTTTGCCATTGTGCAAGGAACACAGCCTTTCAGGACCC
1 -----TCAGGACCCCTAATTGACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCC
9404267 CTAATT
61 CTAATT
9404273 TTCCCATGGA
Statistics
Matches: 150, Mismatches: 7, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
92 86 0.57
97 1 0.01
98 1 0.01
104 62 0.41
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (95 bp):
TCAGGACCCCTAATTGACATAGTTTTGCCATTGTGTAAGGAACACAGCCTTTCAGGACCCCTAAT
TGACATAGTTTTGCCACTGTGTAAGGAACA
Found at i:9406800 original size:126 final size:125
Alignment explanation
Indices: 9406567--9406816 Score: 403
Period size: 126 Copynumber: 2.0 Consensus size: 125
9406557 CAGAAGTTTC
*
9406567 CTATATGACTGCAAAACTACAAATTAAGCCACACAAGGCTACGAGGTCTTCAACAAATATACATT
1 CTATATGACTGCAAAACTACAAATTAAGCCACACAACGCTACGAGGTCTTCAACAAATATACATT
*
9406632 TACTAAAAAACTTAATTCAAAACAAACTTAGAGATCTTTCTCATACTTGATTGGTGATTTT
66 TACTAAAAAACTTAATTCAAAACAAACTTAGAGATC-TTCTCATACTCGATTGGTGATTTT
* *
9406693 CTATATGACTGTAAAAGTACAAATTAAGCCACACAACGCTACGAGGTCTTCAACAAATAATACAT
1 CTATATGACTGCAAAACTACAAATTAAGCCACACAACGCTACGAGGTCTTCAACAAAT-ATACAT
* * *
9406758 TTTCTTAAAAGCTTAATTCAAAACAAACTTAGAGATAC-TCTCATACTCGATTGGTGATT
65 TTACTAAAAAACTTAATTCAAAACAAACTTAGAGAT-CTTCTCATACTCGATTGGTGATT
9406817 CTTCGGGCCC
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
126 75 0.65
127 39 0.34
128 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (125 bp):
CTATATGACTGCAAAACTACAAATTAAGCCACACAACGCTACGAGGTCTTCAACAAATATACATT
TACTAAAAAACTTAATTCAAAACAAACTTAGAGATCTTCTCATACTCGATTGGTGATTTT
Found at i:9407650 original size:27 final size:27
Alignment explanation
Indices: 9407608--9407732 Score: 176
Period size: 27 Copynumber: 4.9 Consensus size: 27
9407598 CAAAAGAAAC
9407608 ATAGTTTTCCAGCCACAAAGAAACATA
1 ATAGTTTTCCAGCCACAAAGAAACATA
* *
9407635 ATAATTTTTCAGCCACAAAGAAACATA
1 ATAGTTTTCCAGCCACAAAGAAACATA
9407662 ATAGTTTTCCAGCCACAAAGAAACATA
1 ATAGTTTTCCAGCCACAAAGAAACATA
9407689 ATAGTTTT-----C-C--AGAAACATA
1 ATAGTTTTCCAGCCACAAAGAAACATA
9407708 ATAGTTTTCCAGCCACAAAGAAACA
1 ATAGTTTTCCAGCCACAAAGAAACA
9407733 AACTTCCTTG
Statistics
Matches: 86, Mismatches: 4, Indels: 16
0.81 0.04 0.15
Matches are distributed among these distances:
19 17 0.20
21 1 0.01
22 1 0.01
24 1 0.01
25 1 0.01
27 65 0.76
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.24
Consensus pattern (27 bp):
ATAGTTTTCCAGCCACAAAGAAACATA
Found at i:9407677 original size:54 final size:46
Alignment explanation
Indices: 9407608--9407732 Score: 169
Period size: 46 Copynumber: 2.5 Consensus size: 46
9407598 CAAAAGAAAC
*
9407608 ATAGTTTTCCAGCCACAAAGAAACATAATAATTTTTCAGCCACAAAGAAACATA
1 ATAGTTTTCCAGCCACAAAGAAACATAAT-AGTTTT----C-C--AGAAACATA
9407662 ATAGTTTTCCAGCCACAAAGAAACATAATAGTTTTCCAGAAACATA
1 ATAGTTTTCCAGCCACAAAGAAACATAATAGTTTTCCAGAAACATA
9407708 ATAGTTTTCCAGCCACAAAGAAACA
1 ATAGTTTTCCAGCCACAAAGAAACA
9407733 AACTTCCTTG
Statistics
Matches: 70, Mismatches: 1, Indels: 8
0.89 0.01 0.10
Matches are distributed among these distances:
46 34 0.49
48 1 0.01
49 1 0.01
53 5 0.07
54 29 0.41
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.24
Consensus pattern (46 bp):
ATAGTTTTCCAGCCACAAAGAAACATAATAGTTTTCCAGAAACATA
Found at i:9407704 original size:19 final size:19
Alignment explanation
Indices: 9407680--9407719 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
9407670 CCAGCCACAA
9407680 AGAAACATAATAGTTTTCC
1 AGAAACATAATAGTTTTCC
9407699 AGAAACATAATAGTTTTCC
1 AGAAACATAATAGTTTTCC
9407718 AG
1 AG
9407720 CCACAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (19 bp):
AGAAACATAATAGTTTTCC
Found at i:9416544 original size:87 final size:87
Alignment explanation
Indices: 9416190--9417011 Score: 1237
Period size: 87 Copynumber: 9.5 Consensus size: 87
9416180 GTTCGTAAAT
* *
9416190 TTAACGCACGCCACGAAGATAATCATTTCAAAAATGGAAATCCCTTTCGTGCATT-GGCTCGTTC
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGC-TTGGGCTCGTTC
9416254 GTAAATTTATAAACATGATGTAA
65 GTAAATTTATAAACATGATGTAA
* *
9416277 TTAATGCACGCCACGAAG---ATCATTTCAAAAATGGAAATCCCTTTCGGGCTTGGGCTCGTTTG
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGCTTGGGCTCGTTCG
9416339 TAAATTTATAAACATGATGTAA
66 TAAATTTATAAACATGATGTAA
* * *
9416361 TTAACGCACGCCACAAAGATAATCATTTCAAAAATGGAAAT-CCTTTCGGGCATT-GGCTCATTC
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGC-TTGGGCTCGTTC
*
9416424 GTAAATTAATAAACATGATGTAA
65 GTAAATTTATAAACATGATGTAA
*
9416447 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGATATCCCTTTCGGGCTTGGGCTCGTTCG
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGCTTGGGCTCGTTCG
9416512 TAAATTTATAAACATGATGTAA
66 TAAATTTATAAACATGATGTAA
*
9416534 TTAACACACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGCATT-GGCTCGTTC
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGC-TTGGGCTCGTTC
9416598 GTAAATTTATAAACATGATGTAA
65 GTAAATTTATAAACATGATGTAA
* * * * *
9416621 TTAATGCACGCCACGAAGAAAATCATTTCAAAAATAGACATCCCTTTCAGGCTTGGGCTCGTTTG
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGCTTGGGCTCGTTCG
*
9416686 TAAATTTATAAACATGATGCAA
66 TAAATTTATAAACATGATGTAA
* * *
9416708 TTAACGCAAGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGCTTCGGCTCATTCG
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGCTTGGGCTCGTTCG
*
9416773 TAAACTTATAAACATGATGTAA
66 TAAATTTATAAACATGATGTAA
* * * **
9416795 TTAAAGCACGCAACAAAGAAAATCATTTCAAAAATGGAAAT-CCTCTTCAAGCTTGGGCTCGTTC
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCT-TTCGGGCTTGGGCTCGTTC
9416859 GTAAATTTATAAACATGATGTAA
65 GTAAATTTATAAACATGATGTAA
* * * * * *
9416882 TCAACACATGCCACGAAGAAAACCATTTCAAAAATGGAAATCCCTTTCAGGCTTGGGCTCATTCG
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGCTTGGGCTCGTTCG
9416947 TAAATTTATAAACATGATGTAA
66 TAAATTTATAAACATGATGTAA
* * * *
9416969 TCAACACACGCCACAAAGAAAATCACTTCAAAAATGGAAATCC
1 TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCC
9417012 GGTTAATAGG
Statistics
Matches: 670, Mismatches: 54, Indels: 22
0.90 0.07 0.03
Matches are distributed among these distances:
83 2 0.00
84 77 0.11
86 84 0.13
87 502 0.75
88 5 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (87 bp):
TTAACGCACGCCACGAAGAAAATCATTTCAAAAATGGAAATCCCTTTCGGGCTTGGGCTCGTTCG
TAAATTTATAAACATGATGTAA
Found at i:9418626 original size:14 final size:14
Alignment explanation
Indices: 9418586--9418626 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
9418576 AAAAAGAAGA
9418586 TACACTCTCTCTTC
1 TACACTCTCTCTTC
9418600 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
9418611 TACACTCTTTCTTC
1 TACACTCTCTCTTC
9418625 TA
1 TA
9418627 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:9423881 original size:28 final size:28
Alignment explanation
Indices: 9423841--9423903 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
9423831 GTCATTATCA
*
9423841 ACCCCGTAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* *
9423869 ACCCCATAAGTTATAAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
9423897 ACCCCAT
1 ACCCCAT
9423904 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:9424065 original size:14 final size:14
Alignment explanation
Indices: 9424025--9424065 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
9424015 AAAAATAAGA
9424025 TACACTCTCTCTTC
1 TACACTCTCTCTTC
9424039 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
9424050 TACACTCTTTCTTC
1 TACACTCTCTCTTC
9424064 TA
1 TA
9424066 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:9429056 original size:19 final size:19
Alignment explanation
Indices: 9429011--9429049 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
9429001 CATCGAAATA
9429011 TCAGAAAAGTAAATCATTT
1 TCAGAAAAGTAAATCATTT
9429030 TCAGAAAAGTAAATCATTT
1 TCAGAAAAGTAAATCATTT
9429049 T
1 T
9429050 TCAAAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (19 bp):
TCAGAAAAGTAAATCATTT
Found at i:9432593 original size:87 final size:86
Alignment explanation
Indices: 9432477--9432822 Score: 446
Period size: 87 Copynumber: 4.0 Consensus size: 86
9432467 GGCAACAGTG
* * * *
9432477 TTTCGGGCTTGGGCTCATTTGTAAATTTATAAACATGATGTAATTAACGCATGCCACAAAGAAAA
1 TTTCGGGCTTGGCCTCATTCGTAAATTTATAAACATGATGTAATTAACACATGCCACGAAGAAAA
9432542 TCATTTCAAAAATGGAAATACC
66 TCATTTCAAAAATGGAAAT-CC
* * *
9432564 TTTCGGGCTTGGCCCCGTTCGTAAATTTATAAACATGATGTAATTAAAACATGCCACGAAGAAAA
1 TTTCGGGCTTGGCCTCATTCGTAAATTTATAAACATGATGTAATTAACACATGCCACGAAGAAAA
9432629 TCATTTCAAAAATGGAAATCC
66 TCATTTCAAAAATGGAAATCC
* ** ** *
9432650 GTTT-GAGGCTTGGGCTTGTTCAAAAATTTATAAACATGATGTAATTATCACATGCCACGAAGAA
1 -TTTCG-GGCTTGGCCTCATTCGTAAATTTATAAACATGATGTAATTAACACATGCCACGAAGAA
*
9432714 AATCATTTCAAAAGTGGAAATTCC
64 AATCATTTCAAAAATGGAAA-TCC
* * * *
9432738 TCTCGGGCTTGGCCTCATTTGTAAATTTATAAACATGATGTAAGTTATGCAC--GCCATGAAGAA
1 TTTCGGGCTTGGCCTCATTCGTAAATTTATAAACATGATGTAA-TTA-ACACATGCCACGAAGAA
*
9432801 AATCATTTCAAAAATGGGAATC
64 AATCATTTCAAAAATGGAAATC
9432823 AGATTAACAG
Statistics
Matches: 227, Mismatches: 26, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
86 5 0.02
87 212 0.93
88 7 0.03
89 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.30
Consensus pattern (86 bp):
TTTCGGGCTTGGCCTCATTCGTAAATTTATAAACATGATGTAATTAACACATGCCACGAAGAAAA
TCATTTCAAAAATGGAAATCC
Found at i:9432772 original size:174 final size:174
Alignment explanation
Indices: 9432499--9432822 Score: 506
Period size: 174 Copynumber: 1.9 Consensus size: 174
9432489 GCTCATTTGT
*
9432499 AAATTTATAAACATGATGTAATTAACGCATGCCACAAAGAAAATCATTTCAAAAATGGAAATACC
1 AAATTTATAAACATGATGTAATTAACACATGCCACAAAGAAAATCATTTCAAAAATGGAAATACC
* * *
9432564 TTTCGGGCTTGGCCCCGTTCGTAAATTTATAAACATGATGTAA-TTAAAACATGCCACGAAGAAA
66 TCTCGGGCTTGGCCCCATTCGTAAATTTATAAACATGATGTAAGTT-AAACACGCCACGAAGAAA
9432628 ATCATTTCAAAAATGGAAATCCGTTTGAGGCTTGGGCTTGTTCAA
130 ATCATTTCAAAAATGGAAATCCGTTTGAGGCTTGGGCTTGTTCAA
* * * *
9432673 AAATTTATAAACATGATGTAATTATCACATGCCACGAAGAAAATCATTTCAAAAGTGGAAATTCC
1 AAATTTATAAACATGATGTAATTAACACATGCCACAAAGAAAATCATTTCAAAAATGGAAATACC
* * ** *
9432738 TCTCGGGCTTGGCCTCATTTGTAAATTTATAAACATGATGTAAGTTATGCACGCCATGAAGAAAA
66 TCTCGGGCTTGGCCCCATTCGTAAATTTATAAACATGATGTAAGTTAAACACGCCACGAAGAAAA
*
9432803 TCATTTCAAAAATGGGAATC
131 TCATTTCAAAAATGGAAATC
9432823 AGATTAACAG
Statistics
Matches: 135, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
174 133 0.99
175 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (174 bp):
AAATTTATAAACATGATGTAATTAACACATGCCACAAAGAAAATCATTTCAAAAATGGAAATACC
TCTCGGGCTTGGCCCCATTCGTAAATTTATAAACATGATGTAAGTTAAACACGCCACGAAGAAAA
TCATTTCAAAAATGGAAATCCGTTTGAGGCTTGGGCTTGTTCAA
Found at i:9434455 original size:14 final size:15
Alignment explanation
Indices: 9434436--9434465 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9434426 TTTTAACAGT
9434436 AAAT-AAAAAATAAA
1 AAATAAAAAAATAAA
9434450 AAATAAAAAAATAAA
1 AAATAAAAAAATAAA
9434465 A
1 A
9434466 CCCTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
AAATAAAAAAATAAA
Found at i:9434458 original size:8 final size:7
Alignment explanation
Indices: 9434436--9434465 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
9434426 TTTTAACAGT
9434436 AAATAAA
1 AAATAAA
9434443 AAATAAA
1 AAATAAA
9434450 AAATAAAA
1 AAAT-AAA
9434458 AAATAAA
1 AAATAAA
9434465 A
1 A
9434466 CCCTAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAATAAA
Found at i:9435602 original size:31 final size:32
Alignment explanation
Indices: 9435566--9435633 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 32
9435556 TGTTATAAAA
* *
9435566 AAATATTTTAGAAAAAT-AAAATGTATAT-TTT
1 AAATATGTT-GAAAAATAAAAAAGTATATATTT
* *
9435597 AAATATGTTGTAAAGTAAAAAAGTATATATTT
1 AAATATGTTGAAAAATAAAAAAGTATATATTT
9435629 AAATA
1 AAATA
9435634 ACATTTAGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
30 5 0.16
31 18 0.58
32 8 0.26
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (32 bp):
AAATATGTTGAAAAATAAAAAAGTATATATTT
Found at i:9439426 original size:18 final size:20
Alignment explanation
Indices: 9439391--9439429 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
9439381 CTCTTTTATT
*
9439391 TATATAAATAAATTAATAAG
1 TATATAAATAAATAAATAAG
9439411 TATAT-AATAAA-AAATAAG
1 TATATAAATAAATAAATAAG
9439429 T
1 T
9439430 TTTTTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 6 0.33
20 5 0.28
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
TATATAAATAAATAAATAAG
Found at i:9439601 original size:13 final size:13
Alignment explanation
Indices: 9439583--9439607 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9439573 TTATAAAATG
9439583 AAAAAATTATTTA
1 AAAAAATTATTTA
9439596 AAAAAATTATTT
1 AAAAAATTATTT
9439608 TTTTATATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAAAATTATTTA
Found at i:9439659 original size:50 final size:50
Alignment explanation
Indices: 9439602--9439701 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
9439592 TTTAAAAAAA
9439602 TTATTTTTTTATATGTAAAATATTTCAAATATCATTGTTTTTTCATCTAC
1 TTATTTTTTTATATGTAAAATATTTCAAATATCATTGTTTTTTCATCTAC
9439652 TTATTTTTTTATATGTAAAATATTTCAAATATCATTGTTTTTTCATCTAC
1 TTATTTTTTTATATGTAAAATATTTCAAATATCATTGTTTTTTCATCTAC
9439702 ATTGTGGGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.30, C:0.10, G:0.04, T:0.56
Consensus pattern (50 bp):
TTATTTTTTTATATGTAAAATATTTCAAATATCATTGTTTTTTCATCTAC
Found at i:9439785 original size:20 final size:22
Alignment explanation
Indices: 9439729--9439785 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
9439719 TCAAATATTT
9439729 TTATATGTGAAATATTTCAATTAA
1 TTATATGTGAAATA--TCAATTAA
*
9439753 TTAT-T-TCAAATATC-ATT-A
1 TTATATGTGAAATATCAATTAA
9439771 TTATATGTGAAATAT
1 TTATATGTGAAATAT
9439786 TTTAAATGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
18 5 0.17
19 4 0.14
20 9 0.31
22 6 0.21
23 1 0.03
24 4 0.14
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (22 bp):
TTATATGTGAAATATCAATTAA
Found at i:9440533 original size:164 final size:169
Alignment explanation
Indices: 9440080--9440537 Score: 581
Period size: 170 Copynumber: 2.7 Consensus size: 169
9440070 GCACTTTTTG
** ** * * *
9440080 TTTCTCTTCTTAAAATCGAACTATTTCTTTAAATATCACAAAATTCAGTCCAAAACCCTAATTTT
1 TTTCTCTTCCCAAAATCGGCCTATTTCTCTAAATATCACAAAATTCA-ACCAAAACCTTAATTTT
9440145 TTAAAACTGACATATATCTAAAATTTAATTGATGTTATTATTCAC-TGATAATGCATGAAACTTA
65 TTAAAACTGACATATATCTAAAATTTAATTGATGTTATTATTCACTTG-TAATGCATGAAACTTA
*
9440209 TAGATTGACGATGCATTAAATATTATTTTATTTTCTTTCTA
129 TAGATTGACGATGCATTAAATATTATTTTATTTTCTATCTA
* * *
9440250 TTTCTCTTCCCAAAATCGGCCTATTTATCAAAATATCACAAAATTCAGCCTAAAACCTTAATTTT
1 TTTCTCTTCCCAAAATCGGCCTATTTCTCTAAATATCACAAAATTCAACC-AAAACCTTAATTTT
* * * ** *
9440315 TTAAAACTGGCATGTATCTAAAATTTAATTAATGTTATTATTCACTAATAATGCATTAAACTTAT
65 TTAAAACTGACATATATCTAAAATTTAATTGATGTTATTATTCACTTGTAATGCATGAAACTTAT
*
9440380 -GCCTTGACGATGCATTAAATATTATTTTATTTT-TAT-T-
130 AG-ATTGACGATGCATTAAATATTATTTTATTTTCTATCTA
* * * **
9440417 TTT-T-TT-CCAAAATTGGTCTATTTCTCTAAATATTACAAAATTCAACCAAAAGTTTTAATTTT
1 TTTCTCTTCCCAAAATCGGCCTATTTCTCTAAATATCACAAAATTCAACCAAAA-CCTTAATTTT
* * *
9440479 TTAAATCTGACATATATTTAAAATTTAACTGATGTTATTATTCACTTGTAATGCATGAA
65 TTAAAACTGACATATATCTAAAATTTAATTGATGTTATTATTCACTTGTAATGCATGAA
9440538 GTTTATGTAC
Statistics
Matches: 250, Mismatches: 34, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
163 4 0.02
164 93 0.37
165 2 0.01
166 1 0.00
167 3 0.01
168 1 0.00
169 5 0.02
170 141 0.56
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42
Consensus pattern (169 bp):
TTTCTCTTCCCAAAATCGGCCTATTTCTCTAAATATCACAAAATTCAACCAAAACCTTAATTTTT
TAAAACTGACATATATCTAAAATTTAATTGATGTTATTATTCACTTGTAATGCATGAAACTTATA
GATTGACGATGCATTAAATATTATTTTATTTTCTATCTA
Found at i:9443853 original size:18 final size:18
Alignment explanation
Indices: 9443818--9443853 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
9443808 TATTATTGAT
*
9443818 CATGTTTAACTATAAAAA
1 CATGTTTAAATATAAAAA
9443836 CATGTTTAAATATTAAAA
1 CATGTTTAAATA-TAAAA
9443854 TTTACATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (18 bp):
CATGTTTAAATATAAAAA
Found at i:9446229 original size:16 final size:17
Alignment explanation
Indices: 9446208--9446239 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
9446198 GAATATATAC
9446208 AAGAAAAAAA-AAGGGG
1 AAGAAAAAAATAAGGGG
9446224 AAGAAAAAAATAAGGG
1 AAGAAAAAAATAAGGG
9446240 TAAACTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (17 bp):
AAGAAAAAAATAAGGGG
Found at i:9448616 original size:51 final size:51
Alignment explanation
Indices: 9448540--9448659 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 51
9448530 AACTAAGTTA
* * * *
9448540 TCCGGATAAAACATGAAACTCTTGTTGAAGCTAGAGCAACAAAGTAATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
* *
9448591 TCCGGATGAAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
*
9448642 TCCGGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
9448660 TAAGTTTGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
Found at i:9462168 original size:13 final size:13
Alignment explanation
Indices: 9462150--9462174 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9462140 AGCCACTAGA
9462150 GCCTCTGCCTCTT
1 GCCTCTGCCTCTT
9462163 GCCTCTGCCTCT
1 GCCTCTGCCTCT
9462175 ACCTCTACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.16, T:0.36
Consensus pattern (13 bp):
GCCTCTGCCTCTT
Found at i:9466697 original size:126 final size:126
Alignment explanation
Indices: 9466333--9466689 Score: 619
Period size: 126 Copynumber: 2.8 Consensus size: 126
9466323 TAGCTTTAAG
*
9466333 AGGATATTC-GAATATCCAAAACAAACAAAGAAAGCAAAACCCAGTACGTTAGGGCACGATCTTT
1 AGGATATTCTG-ATATTCAAAACAAACAAAGAAAGCAAAACCCAGTACGTTAGGGCACGATCTTT
* *
9466397 TGAATTCTTTAAATACCGAACATTACCTTTATTTTGAAAAATTTTAAGAGTGAACTGGTAAA
65 TGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTAAGAGTGAACCGGTAAA
*
9466459 AGGATATTCTGATATTCAAAACAAACAAAGAAAGTAAAACCCAGTACGTTAGGGCACGATCTTTT
1 AGGATATTCTGATATTCAAAACAAACAAAGAAAGCAAAACCCAGTACGTTAGGGCACGATCTTTT
9466524 GAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTAAGAGTGAACCGGTAAA
66 GAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTAAGAGTGAACCGGTAAA
*
9466585 AGGATATTCTGATATTCAAAACAAACAAAGAAAGCAAAACCCAGTACGTTAGGGCACGATCCTTT
1 AGGATATTCTGATATTCAAAACAAACAAAGAAAGCAAAACCCAGTACGTTAGGGCACGATCTTTT
* * *
9466650 GAATTCTTTAAATACCGAACGTTGTCATTATTTT-AAAAAT
66 GAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAAT
9466690 AATTAAGAAT
Statistics
Matches: 221, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
125 6 0.03
126 214 0.97
127 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (126 bp):
AGGATATTCTGATATTCAAAACAAACAAAGAAAGCAAAACCCAGTACGTTAGGGCACGATCTTTT
GAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTAAGAGTGAACCGGTAAA
Found at i:9467333 original size:20 final size:21
Alignment explanation
Indices: 9467308--9467348 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
9467298 ACGAACTATT
*
9467308 ATAATAGTAG-AATATAATAA
1 ATAATAGTAGTAATAAAATAA
*
9467328 ATAATATTAGTAATAAAATAA
1 ATAATAGTAGTAATAAAATAA
9467349 TATTATTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
ATAATAGTAGTAATAAAATAA
Found at i:9467341 original size:16 final size:17
Alignment explanation
Indices: 9467322--9467353 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9467312 TAGTAGAATA
9467322 TAAT-AAATAATATTAG
1 TAATAAAATAATATTAG
9467338 TAATAAAATAATATTA
1 TAATAAAATAATATTA
9467354 TTCTTAACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAAAATAATATTAG
Found at i:9467395 original size:15 final size:15
Alignment explanation
Indices: 9467370--9467412 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
9467360 ACAGTCAAGT
*
9467370 ATAAT-AAAATAGTA
1 ATAATAAAAATAATA
9467384 ATAATAAAAATAATA
1 ATAATAAAAATAATA
*
9467399 ATACTAAAAATAAT
1 ATAATAAAAATAAT
9467413 TAATTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (15 bp):
ATAATAAAAATAATA
Found at i:9468872 original size:44 final size:43
Alignment explanation
Indices: 9468824--9469099 Score: 151
Period size: 44 Copynumber: 6.3 Consensus size: 43
9468814 TCTGCTCAAC
*
9468824 TATTGCTTAGGGAGATAAGATCTATAATCTTCAGCTTGTTACCA
1 TATTGCTTAGGGAGATAAGATCTGTAAT-TTCAGCTTGTTACCA
* * * * * *
9468868 TATTGCCTA-GGAGTTAA-AGCCTGCAATCTTTAGCTTGTTACCC
1 TATTGCTTAGGGAGATAAGA-TCTGTAAT-TTCAGCTTGTTACCA
* * * * *
9468911 TATTCCTTAGGGAGTTAAAGCTTGCTGT--TTTC-G-AT-CTACCCA
1 TATTGCTTAGGGAGAT-AAG-AT-CTGTAATTTCAGCTTGTTA-CCA
* *
9468953 CTATTGCTTAGGGAGATAGGATCTGTAATTTTCAGCTTGTTACCC
1 -TATTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCTTGTTACCA
* * * **
9468998 TATTGCTTAGGGAGTTAAAGCCTGCTGT--TTTC-GATCTG-CCCCA
1 TATTGCTTAGGGAGAT-AAG-AT-CTGTAATTTCAGCT-TGTTACCA
* *
9469041 CTATTGCTTAGGGAGATAAGATCTGTAATTTTTAGCTTGTTACCC
1 -TATTGCTTAGGGAGATAAGATCTGTAA-TTTCAGCTTGTTACCA
9469086 TATTGCTTAGGGAG
1 TATTGCTTAGGGAG
9469100 TTAAAGCCTC
Statistics
Matches: 171, Mismatches: 37, Indels: 48
0.67 0.14 0.19
Matches are distributed among these distances:
40 4 0.02
41 7 0.04
42 7 0.04
43 59 0.35
44 72 0.42
45 12 0.07
46 3 0.02
47 7 0.04
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (43 bp):
TATTGCTTAGGGAGATAAGATCTGTAATTTCAGCTTGTTACCA
Found at i:9468903 original size:43 final size:44
Alignment explanation
Indices: 9468849--9469022 Score: 126
Period size: 43 Copynumber: 4.0 Consensus size: 44
9468839 TAAGATCTAT
9468849 AATCTTCAGCTTGTTACCATATTGCC-TA-GGAGTTAAAGCCTGC
1 AATCTTCAGCTTGTTACCATATT-CCTTAGGGAGTTAAAGCCTGC
* * *
9468892 AATCTTTAGCTTGTTACCCTATTCCTTAGGGAGTTAAAGCTTGC
1 AATCTTCAGCTTGTTACCATATTCCTTAGGGAGTTAAAGCCTGC
** * * * * * * * *
9468936 TGTTTTC-G-AT-CTACCCACTATTGCTTAGGGAGAT-AGGATCTGT
1 AATCTTCAGCTTGTTA-CCA-TATTCCTTAGGGAGTTAAAG-CCTGC
* * *
9468979 AATTTTCAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCCTGC
1 AATCTTCAGCTTGTTACCATATTCCTTAGGGAGTTAAAGCCTGC
9469023 TGTTTTCGAT
Statistics
Matches: 97, Mismatches: 25, Indels: 17
0.70 0.18 0.12
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 45 0.46
44 36 0.37
45 5 0.05
46 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (44 bp):
AATCTTCAGCTTGTTACCATATTCCTTAGGGAGTTAAAGCCTGC
Found at i:9469085 original size:88 final size:87
Alignment explanation
Indices: 9468896--9469108 Score: 372
Period size: 88 Copynumber: 2.4 Consensus size: 87
9468886 GCCTGCAATC
* *
9468896 TTTAGCTTGTTACCCTATTCCTTAGGGAGTTAAAGCTTGCTGTTTTCGATCTACCCACTATTGCT
1 TTTAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCCTGCTGTTTTCGATCTACCCACTATTGCT
*
9468961 TAGGGAGATAGGATCTGTAATT
66 TAGGGAGATAAGATCTGTAATT
* *
9468983 TTCAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCCTGCTGTTTTCGATCTGCCCCACTATTGC
1 TTTAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCCTGCTGTTTTCGATCT-ACCCACTATTGC
9469048 TTAGGGAGATAAGATCTGTAATT
65 TTAGGGAGATAAGATCTGTAATT
9469071 TTTAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCCT
1 TTTAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCCT
9469109 CTGAAATTTT
Statistics
Matches: 119, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 49 0.41
88 70 0.59
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (87 bp):
TTTAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCCTGCTGTTTTCGATCTACCCACTATTGCT
TAGGGAGATAAGATCTGTAATT
Found at i:9480514 original size:126 final size:126
Alignment explanation
Indices: 9480279--9480515 Score: 370
Period size: 126 Copynumber: 1.9 Consensus size: 126
9480269 GCTTTAAGAG
* **
9480279 GATATTCGAATATCCAAAACAAACAAACAAATCAAAACCCAGTACGTTAGGGCATGATCCTTTGA
1 GATATTCGAATATCCAAAACAAACAAACAAAGCAAAACCCAGTACGTTAGGGCACAATCCTTTGA
* **
9480344 ATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAATTGGTAAAAA
66 ATTCTTTAAATACCGAACATTGCCATTATTTTGAAAAAAATTGAGAGTGAATTGGTAAAAA
* *
9480405 GATATTCTG-ATATTCAAAACAAACAAACAAAGCGAAACCCAGTACGTTAGGGCACAATCCTTTG
1 GATATTC-GAATATCCAAAACAAACAAACAAAGCAAAACCCAGTACGTTAGGGCACAATCCTTTG
9480469 AATTCTTTAAATACCGAACATTGCCATTATTTT-AAAAACAATTGAGA
65 AATTCTTTAAATACCGAACATTGCCATTATTTTGAAAAA-AATTGAGA
9480516 ATAAATCTGT
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
125 5 0.05
126 95 0.94
127 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (126 bp):
GATATTCGAATATCCAAAACAAACAAACAAAGCAAAACCCAGTACGTTAGGGCACAATCCTTTGA
ATTCTTTAAATACCGAACATTGCCATTATTTTGAAAAAAATTGAGAGTGAATTGGTAAAAA
Found at i:9481157 original size:20 final size:21
Alignment explanation
Indices: 9481132--9481172 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
9481122 ACGAACTATT
*
9481132 ATAATAGTAG-AATATAATAA
1 ATAATAGTAGTAATAAAATAA
*
9481152 ATAATATTAGTAATAAAATAA
1 ATAATAGTAGTAATAAAATAA
9481173 TATTATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
ATAATAGTAGTAATAAAATAA
Found at i:9481165 original size:16 final size:17
Alignment explanation
Indices: 9481146--9481177 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9481136 TAGTAGAATA
9481146 TAAT-AAATAATATTAG
1 TAATAAAATAATATTAG
9481162 TAATAAAATAATATTA
1 TAATAAAATAATATTA
9481178 TTATTAACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAAAATAATATTAG
Found at i:9482199 original size:17 final size:15
Alignment explanation
Indices: 9482168--9482201 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
9482158 GGTTTAGGTA
9482168 GGTTTTGGGGTATTG
1 GGTTTTGGGGTATTG
9482183 GGTTATTGGGTGTATTG
1 GGTT-TTGGG-GTATTG
9482200 GG
1 GG
9482202 CTTAGAGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 5 0.29
17 8 0.47
ACGTcount: A:0.09, C:0.00, G:0.47, T:0.44
Consensus pattern (15 bp):
GGTTTTGGGGTATTG
Found at i:9485358 original size:20 final size:20
Alignment explanation
Indices: 9485322--9485365 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
9485312 ACCCTAAACT
*
9485322 AGTTTGGATTTTGAGTTCAG
1 AGTTTGGATTTTAAGTTCAG
*
9485342 AGTTTGAGA-TTTAAGTTTAG
1 AGTTTG-GATTTTAAGTTCAG
9485362 AGTT
1 AGTT
9485366 GAGGTATGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.45
Consensus pattern (20 bp):
AGTTTGGATTTTAAGTTCAG
Found at i:9487293 original size:10 final size:10
Alignment explanation
Indices: 9487278--9487303 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
9487268 ACAATTAATT
9487278 AACTTTTTAA
1 AACTTTTTAA
9487288 AACTTTTTAA
1 AACTTTTTAA
9487298 AACTTT
1 AACTTT
9487304 AAAAAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (10 bp):
AACTTTTTAA
Found at i:9487382 original size:18 final size:21
Alignment explanation
Indices: 9487339--9487382 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 21
9487329 TTTATTTTAA
9487339 AAATAAATATGTATTAAAAAG
1 AAATAAATATGTATTAAAAAG
*
9487360 -TATAAA-AT-TA-TAAAAAG
1 AAATAAATATGTATTAAAAAG
9487377 AAATAA
1 AAATAA
9487383 TATTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 5
0.74 0.07 0.19
Matches are distributed among these distances:
17 7 0.35
18 6 0.30
19 2 0.10
20 5 0.25
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (21 bp):
AAATAAATATGTATTAAAAAG
Found at i:9494149 original size:15 final size:15
Alignment explanation
Indices: 9494113--9494142 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9494103 CTTTACGGAT
*
9494113 GAAGACGGAGGAGAA
1 GAAGAAGGAGGAGAA
9494128 GAAGAAGGAGGAGAA
1 GAAGAAGGAGGAGAA
9494143 ATAGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (15 bp):
GAAGAAGGAGGAGAA
Found at i:9495805 original size:16 final size:17
Alignment explanation
Indices: 9495784--9495818 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
9495774 GTGTAATTTT
*
9495784 AATTTTAATAA-TTTAA
1 AATTTTAAAAATTTTAA
9495800 AATTTTAAAAATTTTAA
1 AATTTTAAAAATTTTAA
9495817 AA
1 AA
9495819 GGATTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTTAAAAATTTTAA
Found at i:9500215 original size:22 final size:21
Alignment explanation
Indices: 9500190--9500244 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
9500180 TAAAAATAGT
*
9500190 TATTTTAGTTTATCTCAAATTA
1 TATTTTAGTTCA-CTCAAATTA
9500212 TATTTTAG-TCACTCAAATTA
1 TATTTTAGTTCACTCAAATTA
9500232 TATTTTAG-TCACT
1 TATTTTAGTTCACT
9500245 TATGTTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 22 0.69
21 2 0.06
22 8 0.25
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (21 bp):
TATTTTAGTTCACTCAAATTA
Found at i:9500226 original size:20 final size:20
Alignment explanation
Indices: 9500203--9500244 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
9500193 TTTAGTTTAT
9500203 CTCAAATTATATTTTAGTCA
1 CTCAAATTATATTTTAGTCA
9500223 CTCAAATTATATTTTAGTCA
1 CTCAAATTATATTTTAGTCA
9500243 CT
1 CT
9500245 TATGTTTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.45
Consensus pattern (20 bp):
CTCAAATTATATTTTAGTCA
Found at i:9504820 original size:26 final size:26
Alignment explanation
Indices: 9504785--9504839 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
9504775 TGAAGTACAA
9504785 GATTATTTAATTACATAAGTATGGTT
1 GATTATTTAATTACATAAGTATGGTT
9504811 GATTATTTAATTACATAAGTATGGTT
1 GATTATTTAATTACATAAGTATGGTT
9504837 GAT
1 GAT
9504840 GGGTAAACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.04, G:0.16, T:0.45
Consensus pattern (26 bp):
GATTATTTAATTACATAAGTATGGTT
Found at i:9510577 original size:25 final size:26
Alignment explanation
Indices: 9510527--9510578 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
9510517 TTTTATGGAC
9510527 TAAATTATCAAAAAATAGTCATTTTT
1 TAAATTATCAAAAAATAGTCATTTTT
9510553 TAAATTA-C-AAAAATAGATCGATTTTT
1 TAAATTATCAAAAAATAG-TC-ATTTTT
9510579 CAAAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 8 0.33
25 3 0.12
26 13 0.54
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (26 bp):
TAAATTATCAAAAAATAGTCATTTTT
Found at i:9518016 original size:121 final size:125
Alignment explanation
Indices: 9517864--9518155 Score: 310
Period size: 131 Copynumber: 2.3 Consensus size: 125
9517854 GAAAAATCGA
* * * *
9517864 AACCCAGCACAGTAGGGCACGATTCCTCGAATTTCCTAAACATTGAACATT-GCTTCGCCTT-G-
1 AACCCAGCACAATAGGGCACGATTCCCCGAATTTCC-AAACATCGAACATTACCTTCGCCTTGGA
* * * *
9517926 G-AAAA-CACGAGTGAAATTCTAAAGGAATATTTGATCGTTTTGAACAAACGGGAAACCGC
65 GTAAAAGCACGAGTGAAATCCTAAAGGAATATTCGATCGTTTTGAACAAACGAGAAACCAC
**
9517985 AACCCAGCACAATAGGGCACGATTCCCCGAATTGT-CAAACATCGAACATTACCTTCGTTTTGGA
1 AACCCAGCACAATAGGGCACGATTCCCCGAATT-TCCAAACATCGAACATTACCTTCGCCTTGGA
* ** *
9518049 GAATTTTTAAAAGCATGAGTGAAATCCTAAAGGAATATTCGATTTTTTTGAACAAACGAGAAATC
65 G------TAAAAGCACGAGTGAAATCCTAAAGGAATATTCGATCGTTTTGAACAAACGAGAAACC
9518114 AC
124 AC
* * *
9518116 AACCCAGCACGATAGGGCATGATT-CCCGAATTGCCAAACA
1 AACCCAGCACAATAGGGCACGATTCCCCGAATTTCCAAACA
9518156 CCGAGTATTG
Statistics
Matches: 141, Mismatches: 17, Indels: 17
0.81 0.10 0.10
Matches are distributed among these distances:
120 13 0.09
121 39 0.28
122 2 0.01
123 1 0.01
130 18 0.13
131 68 0.48
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (125 bp):
AACCCAGCACAATAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTACCTTCGCCTTGGAG
TAAAAGCACGAGTGAAATCCTAAAGGAATATTCGATCGTTTTGAACAAACGAGAAACCAC
Found at i:9523944 original size:17 final size:17
Alignment explanation
Indices: 9523918--9523953 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
9523908 CTTTATATAC
9523918 TTTATGTATTATTTATT
1 TTTATGTATTATTTATT
*
9523935 TTTATTTATTATTTATT
1 TTTATGTATTATTTATT
9523952 TT
1 TT
9523954 ACGATCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (17 bp):
TTTATGTATTATTTATT
Found at i:9524298 original size:19 final size:19
Alignment explanation
Indices: 9524274--9524311 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
9524264 TTTAGATTGC
*
9524274 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
9524293 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
9524312 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:9527184 original size:18 final size:18
Alignment explanation
Indices: 9527162--9527211 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
9527152 TGTTAAATAC
9527162 CAAAATTTTAAGGATATTA
1 CAAAATTTTAAGGA-ATTA
9527181 -AAAATTTTAAGGAATTA
1 CAAAATTTTAAGGAATTA
9527198 CTAAAATTTCTAAG
1 C-AAAATTT-TAAG
9527212 CGTAACTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.14
18 13 0.46
19 7 0.25
20 4 0.14
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (18 bp):
CAAAATTTTAAGGAATTA
Found at i:9528642 original size:3 final size:3
Alignment explanation
Indices: 9528636--9528677 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
9528626 CAGCAGCAGC
*
9528636 AGA AGA AGA TGA AGA AGA AGA AGA AGA A-A AGAA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA
9528678 TCTGATATTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:9529477 original size:32 final size:33
Alignment explanation
Indices: 9529422--9529495 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
9529412 AGGCTCGTCC
*
9529422 ATATTATTTTTAAAATTT-TTAAAAA-TTATATT
1 ATATTA-TTTTAAAATTTATAAAAAATTTATATT
*
9529454 ATATTATTTTAATATTTAATAAAAAATTTATATT
1 ATATTATTTTAAAATTT-ATAAAAAATTTATATT
*
9529488 -TTTTATTT
1 ATATTATTT
9529496 ATTGAAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
31 10 0.28
32 6 0.17
33 13 0.36
34 7 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (33 bp):
ATATTATTTTAAAATTTATAAAAAATTTATATT
Found at i:9530051 original size:15 final size:16
Alignment explanation
Indices: 9530024--9530053 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9530014 AAGATTAAAT
9530024 TATAAATTATAAATAA
1 TATAAATTATAAATAA
9530040 TATAAA-TATAAATA
1 TATAAATTATAAATA
9530054 TTTTTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TATAAATTATAAATAA
Found at i:9531104 original size:18 final size:18
Alignment explanation
Indices: 9531077--9531130 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
9531067 GGGTTTAGGG
9531077 TTTTTT-TATATTTTTTA
1 TTTTTTATATATTTTTTA
9531094 TTTTTTATATAATTTTTTGA
1 TTTTTTATAT-ATTTTTT-A
*
9531114 CTTTTTATA-ATTTTTTA
1 TTTTTTATATATTTTTTA
9531131 GTTATTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 7 0.21
18 10 0.30
19 7 0.21
20 9 0.27
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTTTTATATATTTTTTA
Found at i:9531150 original size:14 final size:14
Alignment explanation
Indices: 9531133--9531159 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9531123 ATTTTTTAGT
9531133 TATTTTAAAATATA
1 TATTTTAAAATATA
9531147 TATTTTAAAATAT
1 TATTTTAAAATAT
9531160 CTAATATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTTAAAATATA
Found at i:9534106 original size:652 final size:652
Alignment explanation
Indices: 9532863--9534174 Score: 2588
Period size: 652 Copynumber: 2.0 Consensus size: 652
9532853 AGAATTCCTA
9532863 CACAAAAGATCATACCATGTGAGTTCTTCATTGGATTAAGGCCTCATTTGGTTTGACTTTTAGCA
1 CACAAAAGATCATACCATGTGAGTTCTTCATTGGATTAAGGCCTCATTTGGTTTGACTTTTAGCA
9532928 CCAGTGAAGTGCAGTTGGGGTAGGTTTATGCTTTTAATCTCATTGATATGCTGTTTAGTTCAGTA
66 CCAGTGAAGTGCAGTTGGGGTAGGTTTATGCTTTTAATCTCATTGATATGCTGTTTAGTTCAGTA
9532993 TTACAGTTCAGTGAAAATTAATTTCAACCTCACTGCTGTGCTGAAAAGGGGCTGGAGATTTCAAC
131 TTACAGTTCAGTGAAAATTAATTTCAACCTCACTGCTGTGCTGAAAAGGGGCTGGAGATTTCAAC
9533058 AGCAATTAAGGGCATTGGGGCAGTGGGTATTTTTAACAGACAAAAATACCCATACTTTTATTTAT
196 AGCAATTAAGGGCATTGGGGCAGTGGGTATTTTTAACAGACAAAAATACCCATACTTTTATTTAT
9533123 TATTTTATCATTTTATCCTTGAAAGTTAAACTGATTTCTTTCCCAACCTCATTTGTTTTTAGATT
261 TATTTTATCATTTTATCCTTGAAAGTTAAACTGATTTCTTTCCCAACCTCATTTGTTTTTAGATT
9533188 TGGGAAGAAAACAACTGTTTATTTTACCATTGTATGGGGTGTTTGTGCTGGTTCTTCTTTTTCAT
326 TGGGAAGAAAACAACTGTTTATTTTACCATTGTATGGGGTGTTTGTGCTGGTTCTTCTTTTTCAT
9533253 ATCTGCGATTTCTTTTTCTTTTTCTCTTCAGTTATCAGCCACCACTGTGTCCACCATTTTGTTCA
391 ATCTGCGATTTCTTTTTCTTTTTCTCTTCAGTTATCAGCCACCACTGTGTCCACCATTTTGTTCA
9533318 GGATCTGATCTGTATCCCGTGTCGAAATCCGTCGAAACTGCCGAGTCCAGGTAATGAATTAGTTC
456 GGATCTGATCTGTATCCCGTGTCGAAATCCGTCGAAACTGCCGAGTCCAGGTAATGAATTAGTTC
9533383 TTTCCTCTTTCTTTGAGATTGGTATAATCTATAAGTATAGAATGAAGCCTCTGTAACAAAAGAAA
521 TTTCCTCTTTCTTTGAGATTGGTATAATCTATAAGTATAGAATGAAGCCTCTGTAACAAAAGAAA
9533448 TATATGAAACAACAAATCTAGAAAGGTATATATTTATGATCTCCTTTAGTTGCGGGTTTAACGCA
586 TATATGAAACAACAAATCTAGAAAGGTATATATTTATGATCTCCTTTAGTTGCGGGTTTAACGCA
9533513 TG
651 TG
9533515 CACAAAAGATCATACCATGTGAGTTCTTCATTGGATTAAGGCCTCATTTGGTTTGACTTTTAGCA
1 CACAAAAGATCATACCATGTGAGTTCTTCATTGGATTAAGGCCTCATTTGGTTTGACTTTTAGCA
*
9533580 CCAGTGAGGTGCAGTTGGGGTAGGTTTATGCTTTTAATCTCATTGATATGCTGTTTAGTTCAGTA
66 CCAGTGAAGTGCAGTTGGGGTAGGTTTATGCTTTTAATCTCATTGATATGCTGTTTAGTTCAGTA
9533645 TTACAGTTCAGTGAAAATTAATTTCAACCTCACTGCTGTGCTGAAAAGGGGCTGGAGATTTCAAC
131 TTACAGTTCAGTGAAAATTAATTTCAACCTCACTGCTGTGCTGAAAAGGGGCTGGAGATTTCAAC
*
9533710 AGCAATTAAGGGCATTGGGGCAGTGGGTATTTTTAACAGACAAAAATACTCATACTTTTATTTAT
196 AGCAATTAAGGGCATTGGGGCAGTGGGTATTTTTAACAGACAAAAATACCCATACTTTTATTTAT
9533775 TATTTTATCATTTTATCCTTGAAAGTTAAACTGATTTCTTTCCCAACCTCATTTGTTTTTAGATT
261 TATTTTATCATTTTATCCTTGAAAGTTAAACTGATTTCTTTCCCAACCTCATTTGTTTTTAGATT
9533840 TGGGAAGAAAACAACTGTTTATTTTACCATTGTATGGGGTGTTTGTGCTGGTTCTTCTTTTTCAT
326 TGGGAAGAAAACAACTGTTTATTTTACCATTGTATGGGGTGTTTGTGCTGGTTCTTCTTTTTCAT
*
9533905 ATCTGCGATTTCTTTTTCTTTTTCTCTTCAGTTATCAGCCACCACTGTGTCCACCATTTTGTTTA
391 ATCTGCGATTTCTTTTTCTTTTTCTCTTCAGTTATCAGCCACCACTGTGTCCACCATTTTGTTCA
*
9533970 GGATCTGATCTGTATCCCGTGTCGAAATTCGTCGAAACTGCCGAGTCCAGGTAATGAATTAGTTC
456 GGATCTGATCTGTATCCCGTGTCGAAATCCGTCGAAACTGCCGAGTCCAGGTAATGAATTAGTTC
9534035 TTTCCTCTTTCTTTGAGATTGGTATAATCTATAAGTATAGAATGAAGCCTCTGTAACAAAAGAAA
521 TTTCCTCTTTCTTTGAGATTGGTATAATCTATAAGTATAGAATGAAGCCTCTGTAACAAAAGAAA
9534100 TATATGAAACAACAAATCTAGAAAGGTATATATTTATGATCTCCTTTAGTTGCGGGTTTAACGCA
586 TATATGAAACAACAAATCTAGAAAGGTATATATTTATGATCTCCTTTAGTTGCGGGTTTAACGCA
9534165 TG
651 TG
9534167 CACAAAAG
1 CACAAAAG
9534175 GGTGATTTCT
Statistics
Matches: 656, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
652 656 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (652 bp):
CACAAAAGATCATACCATGTGAGTTCTTCATTGGATTAAGGCCTCATTTGGTTTGACTTTTAGCA
CCAGTGAAGTGCAGTTGGGGTAGGTTTATGCTTTTAATCTCATTGATATGCTGTTTAGTTCAGTA
TTACAGTTCAGTGAAAATTAATTTCAACCTCACTGCTGTGCTGAAAAGGGGCTGGAGATTTCAAC
AGCAATTAAGGGCATTGGGGCAGTGGGTATTTTTAACAGACAAAAATACCCATACTTTTATTTAT
TATTTTATCATTTTATCCTTGAAAGTTAAACTGATTTCTTTCCCAACCTCATTTGTTTTTAGATT
TGGGAAGAAAACAACTGTTTATTTTACCATTGTATGGGGTGTTTGTGCTGGTTCTTCTTTTTCAT
ATCTGCGATTTCTTTTTCTTTTTCTCTTCAGTTATCAGCCACCACTGTGTCCACCATTTTGTTCA
GGATCTGATCTGTATCCCGTGTCGAAATCCGTCGAAACTGCCGAGTCCAGGTAATGAATTAGTTC
TTTCCTCTTTCTTTGAGATTGGTATAATCTATAAGTATAGAATGAAGCCTCTGTAACAAAAGAAA
TATATGAAACAACAAATCTAGAAAGGTATATATTTATGATCTCCTTTAGTTGCGGGTTTAACGCA
TG
Found at i:9539163 original size:31 final size:31
Alignment explanation
Indices: 9539125--9539187 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
9539115 TGTACCGATT
*
9539125 TAACATTAAGTCATCGAATTTCATCGCTATG
1 TAACATTAAGTCATCGAATTTCATCACTATG
9539156 TAACATTAAGTCATCGAATTTCATCACTATG
1 TAACATTAAGTCATCGAATTTCATCACTATG
9539187 T
1 T
9539188 TGGATGGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (31 bp):
TAACATTAAGTCATCGAATTTCATCACTATG
Found at i:9542882 original size:10 final size:10
Alignment explanation
Indices: 9542863--9542923 Score: 63
Period size: 10 Copynumber: 5.9 Consensus size: 10
9542853 TTAAATTCTA
9542863 AAAGATAAAT
1 AAAGATAAAT
9542873 ACAA-ATAAAT
1 A-AAGATAAAT
9542883 AAAGATAAAT
1 AAAGATAAAT
9542893 AAAGATTAAAGCT
1 AAAGA-TAAA--T
*
9542906 -AGGATAAAT
1 AAAGATAAAT
9542915 AAAGATAAA
1 AAAGATAAA
9542924 AACGAAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
9 3 0.07
10 26 0.60
11 10 0.23
12 3 0.07
13 1 0.02
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:9546437 original size:47 final size:47
Alignment explanation
Indices: 9546374--9546506 Score: 230
Period size: 47 Copynumber: 2.8 Consensus size: 47
9546364 CCGGGATAAG
* * *
9546374 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTGTAGTA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
*
9546421 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTT
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
9546468 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACA
9546507 GTAGTCGACA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.26
Consensus pattern (47 bp):
CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
Found at i:9547885 original size:15 final size:15
Alignment explanation
Indices: 9547865--9547894 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9547855 AGAAAAAAAG
9547865 TAAATAAAGAAATAA
1 TAAATAAAGAAATAA
*
9547880 TAAATAAATAAATAA
1 TAAATAAAGAAATAA
9547895 AATAGTTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (15 bp):
TAAATAAAGAAATAA
Found at i:9551516 original size:22 final size:21
Alignment explanation
Indices: 9551490--9551544 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
9551480 ACAAAGAAGG
*
9551490 AAAGAACAGAATAGCAAACA-AA
1 AAAGAA-AGAA-AGAAAACAGAA
*
9551512 AAAGAAAGAAAGAAAAGAGAA
1 AAAGAAAGAAAGAAAACAGAA
9551533 AAAGAAAAGAAA
1 AAAG-AAAGAAA
9551545 AAGGAAAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 6 0.21
21 10 0.34
22 13 0.45
ACGTcount: A:0.75, C:0.05, G:0.18, T:0.02
Consensus pattern (21 bp):
AAAGAAAGAAAGAAAACAGAA
Found at i:9551919 original size:22 final size:22
Alignment explanation
Indices: 9551881--9551928 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
9551871 AGAAATTAAA
9551881 TAGAAAAGAAGTATGAATTGAGT
1 TAGAAAAGAAG-ATGAATTGAGT
*
9551904 TAGAAAAGTAAG-TGAATTTAGT
1 TAGAAAAG-AAGATGAATTGAGT
9551926 TAG
1 TAG
9551929 GATTAAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 12 0.52
23 8 0.35
24 3 0.13
ACGTcount: A:0.46, C:0.00, G:0.25, T:0.29
Consensus pattern (22 bp):
TAGAAAAGAAGATGAATTGAGT
Found at i:9552190 original size:3 final size:3
Alignment explanation
Indices: 9552182--9552233 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
9552172 ATGAGGTAAA
9552182 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9552230 TAT T
1 TAT T
9552234 GAGATGAGTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9572529 original size:31 final size:31
Alignment explanation
Indices: 9572489--9572557 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
9572479 AAAATCCAAT
* * * *
9572489 AATCTCAGTTGAATTATTATATTGATACTAA
1 AATCCCAGTTGAATTATTAGAATAATACTAA
*
9572520 AATCCCAGTTGAATTATTAGAATAATGCTAA
1 AATCCCAGTTGAATTATTAGAATAATACTAA
9572551 AATCCCA
1 AATCCCA
9572558 CCAACACAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (31 bp):
AATCCCAGTTGAATTATTAGAATAATACTAA
Found at i:9574112 original size:3 final size:3
Alignment explanation
Indices: 9574104--9574135 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
9574094 TTATTAGTGT
9574104 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
9574136 GGGAGGATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:9575191 original size:30 final size:29
Alignment explanation
Indices: 9575139--9575206 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 29
9575129 ATCCAATTAG
9575139 CACCCCACTAAACCGACTACTAACTCCAT
1 CACCCCACTAAACCGACTACTAACTCCAT
9575168 CACCCCACTAAACC-ACCCTACTAACTCCAT
1 CACCCCACTAAACCGA--CTACTAACTCCAT
* *
9575198 TACTCCACT
1 CACCCCACT
9575207 TGCTTACAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
28 1 0.03
29 14 0.40
30 20 0.57
ACGTcount: A:0.32, C:0.47, G:0.01, T:0.19
Consensus pattern (29 bp):
CACCCCACTAAACCGACTACTAACTCCAT
Found at i:9576654 original size:125 final size:125
Alignment explanation
Indices: 9576429--9576731 Score: 421
Period size: 125 Copynumber: 2.4 Consensus size: 125
9576419 TAAGGAAATC
* * * * *
9576429 TTTCGTGTTTGGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTA
1 TTTCGTATTTGGAAGTTCGATAAATAGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTA
*
9576494 AAATACAGAATATCCTTTTGAAATTTCGTCTATGTTCTCTTAAATTAAAGCGAGGCAATA
66 AAATACAGAATATCCTTTTGAAATTTCGTCTATGTTCTCTTAAATTAAAACGAGGCAATA
* * * *
9576554 TTTCGTATTTGGAAGTTCGATAAATAGTGTCGAATCATGCTGGGTTTCGATTTTTTATTCGACTA
1 TTTCGTATTTGGAAGTTCGATAAATAGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTA
* * * * *
9576619 AAATACGGAATATCCTTTTGGAATTTCAT-TCATGTTTTCTTAAATTAAAATGAGGCAATA
66 AAATACAGAATATCCTTTTGAAATTTCGTCT-ATGTTCTCTTAAATTAAAACGAGGCAATA
* *
9576679 TTTCGTATTTGAAAGTTCGATAAATCA-TGCCCAATCGTGTTGGGTTTCGATTT
1 TTTCGTATTTGGAAGTTCGATAAAT-AGTGCCCAATCGTGCTGGGTTTCGATTT
9576732 ACCGTTTGGC
Statistics
Matches: 156, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
124 1 0.01
125 154 0.99
126 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (125 bp):
TTTCGTATTTGGAAGTTCGATAAATAGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTA
AAATACAGAATATCCTTTTGAAATTTCGTCTATGTTCTCTTAAATTAAAACGAGGCAATA
Found at i:9576756 original size:125 final size:126
Alignment explanation
Indices: 9576455--9576772 Score: 367
Period size: 125 Copynumber: 2.5 Consensus size: 126
9576445 TTGAGAGATC
* **
9576455 GTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATAC-AGAATATCCTTTTGAAATT
1 GTGCCCAATCATGCTGGGTTTCGATTTACCATTCGACTAAAATACGA-AATATCCTTTTGAAATT
* *
9576519 TC-GTCTATGTTCTCTTAAATTAAAGCGAGGCAATATTTCGTATTTGGAAGTTCGATAAATA
65 TCAGTCTATGTTCTCTTAAATTAAAACGAGGCAATATTTCGTATTTGAAAGTTCGATAAATA
* * *** * *
9576580 GTGTCGAATCATGCTGGGTTTCGATTTTTTATTCGACTAAAATACGGAATATCCTTTTGGAATTT
1 GTGCCCAATCATGCTGGGTTTCGATTTACCATTCGACTAAAATACGAAATATCCTTTTGAAATTT
* * *
9576645 CATTC-ATGTTTTCTTAAATTAAAATGAGGCAATATTTCGTATTTGAAAGTTCGATAAATCA
66 CAGTCTATGTTCTCTTAAATTAAAACGAGGCAATATTTCGTATTTGAAAGTTCGATAAAT-A
* * * * * * *
9576706 -TGCCCAATCGTGTTGGGTTTCGATTTACCGTTTGGC-CAAATAGCTAAATATCCTTTTTGAAAT
1 GTGCCCAATCATGCTGGGTTTCGATTTACCATTCGACTAAAATA-CGAAATATCC-TTTTGAAAT
9576769 TTCA
64 TTCA
9576773 AATGCATGAG
Statistics
Matches: 163, Mismatches: 25, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
124 5 0.03
125 143 0.88
126 15 0.09
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (126 bp):
GTGCCCAATCATGCTGGGTTTCGATTTACCATTCGACTAAAATACGAAATATCCTTTTGAAATTT
CAGTCTATGTTCTCTTAAATTAAAACGAGGCAATATTTCGTATTTGAAAGTTCGATAAATA
Found at i:9582987 original size:132 final size:133
Alignment explanation
Indices: 9582683--9582989 Score: 391
Period size: 133 Copynumber: 2.3 Consensus size: 133
9582673 GACATTGGTG
* *
9582683 AAATTACATATCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCACCAACCTTATCTCTC
1 AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTC
* * ** * *
9582748 TGAGGTAGCAAGAGAGCAGATTGAAGATAAAAGTCTTATCTTCCTGATGTAGCAAGGAAACAGAC
66 TGAGGTAGCAAGAGAGCAGATTGAAGATAAAAGCCTTAACCCCCTGAAGCAGCAAGGAAACAGAC
*
9582813 TGA
131 TAA
* * * ***
9582816 AAATTACAGATCTTATCTTCATGTATCGGCTATGGAGCAGATTTTAGGCACTGGCCTTATCTCTC
1 AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTC
* * ** * * * *
9582881 TGAGGTAGCAAGAGAGTAGGTTGAAGATACGAGCCTTAACCCCCT-AAGCAGTAGGGTAACAGGC
66 TGAGGTAGCAAGAGAGCAGATTGAAGATAAAAGCCTTAACCCCCTGAAGCAGCAAGGAAACAGAC
9582945 TAA
131 TAA
*
9582948 AAATTACAAATCTTATCTCCATGTATCAGCTATGGAGCAGAT
1 AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGAT
9582990 AAAAAATGGT
Statistics
Matches: 149, Mismatches: 25, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
132 54 0.36
133 95 0.64
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (133 bp):
AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTC
TGAGGTAGCAAGAGAGCAGATTGAAGATAAAAGCCTTAACCCCCTGAAGCAGCAAGGAAACAGAC
TAA
Found at i:9583159 original size:84 final size:85
Alignment explanation
Indices: 9583048--9583397 Score: 349
Period size: 87 Copynumber: 4.1 Consensus size: 85
9583038 AGCCACCGGC
* * *
9583048 CAGATCT-CCTCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCTTTAATCCTCTAAGCAGTA
1 CAGATCTCCCTCTAAACAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAATCCCCTAAGCAGTA
*
9583112 GGGTAACAGGCTGGAA-AATA
66 GGGTAACAGGC-AGAAGAATA
* *
9583132 CAGATCTCCCT-TAAATAGTAGTGGAGCAGATCGAAG-TCAGTGAA-CCTTAAACCCCTAAGCAG
1 CAGATCTCCCTCTAAACAGTAGTGGAGCAGATCGAAGAT-AGT-AAGCCTTAATCCCCTAAGCAG
*
9583194 TAGGGTAACAGGCAGAAGATTA
64 TAGGGTAACAGGCAGAAGAATA
* * * *
9583216 CAAATCTTATCTCC-CTAAGCAGTAGTGGAGTAGATCGAAGATGGTAAGCCTTAAT-CCCTAAGC
1 CAGATC---TC-CCTCTAAACAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAATCCCCTAAGC
*
9583279 AGTAGGGTAACAGGCAGAAGATTA
62 AGTAGGGTAACAGGCAGAAGAATA
* * * * * *
9583303 CAGATCTTGTCTCTCTAAGA-AGTAGTGGAGCAGATCAAAGACAGTGAGCCTTGACCCCCTAAGC
1 CAGATC---TCCCTCTAA-ACAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAATCCCCTAAGC
* *
9583367 AGTAGGGAAACAGGCTGAA-AATTA
62 AGTAGGGTAACAGGCAGAAGAA-TA
9583391 CAGATCT
1 CAGATCT
9583398 TATCTCCCTA
Statistics
Matches: 224, Mismatches: 27, Indels: 29
0.80 0.10 0.10
Matches are distributed among these distances:
83 4 0.02
84 69 0.31
85 6 0.03
86 1 0.00
87 78 0.35
88 65 0.29
89 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (85 bp):
CAGATCTCCCTCTAAACAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAATCCCCTAAGCAGTA
GGGTAACAGGCAGAAGAATA
Found at i:9583232 original size:44 final size:44
Alignment explanation
Indices: 9583184--9583327 Score: 132
Period size: 44 Copynumber: 3.3 Consensus size: 44
9583174 AACCTTAAAC
9583184 CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAAATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAAATCTTATCT
** * *** ** *
9583228 CCCTAAGCAGTAGTGG-AGTAGATC-GAAGATGGTAAGCCTTA-AT
1 CCCTAAGCAGTAG-GGTAACAG-GCAGAAGATTACAAATCTTATCT
* *
9583271 CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAAATCTTATCT
* *
9583315 CTCTAAGAAGTAG
1 CCCTAAGCAGTAG
9583328 TGGAGCAGAT
Statistics
Matches: 73, Mismatches: 22, Indels: 10
0.70 0.21 0.10
Matches are distributed among these distances:
42 3 0.04
43 27 0.37
44 40 0.55
45 3 0.04
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAAATCTTATCT
Found at i:9583268 original size:88 final size:88
Alignment explanation
Indices: 9583051--9583425 Score: 415
Period size: 88 Copynumber: 4.3 Consensus size: 88
9583041 CACCGGCCAG
* * * * *
9583051 ATCTCCTCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCTTTAATCCTCTAAGCAGTAGGGT
1 ATCTCC-CTAAGCAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAAACCCCTAAGCAGTAGGGT
* *
9583116 AACAGGCTGGAA-AATACAGATC--
65 AACAGGC-AGAAGATTACAGATCTT
* **
9583138 -TC-CCTTAAATAGTAGTGGAGCAGATCGAAG-TCAGTGAA-CCTTAAACCCCTAAGCAGTAGGG
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT-AGT-AAGCCTTAAACCCCTAAGCAGTAGGG
*
9583199 TAACAGGCAGAAGATTACAAATCTT
64 TAACAGGCAGAAGATTACAGATCTT
* * *
9583224 ATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTAAGCCTT-AATCCCTAAGCAGTAGGGTA
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAAACCCCTAAGCAGTAGGGTA
9583288 ACAGGCAGAAGATTACAGATCTT
66 ACAGGCAGAAGATTACAGATCTT
* * * * * * * * *
9583311 GTCTCTCTAAGAAGTAGTGGAGCAGATCAAAGACAGTGAGCCTTGACCCCCTAAGCAGTAGGGAA
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAAACCCCTAAGCAGTAGGGTA
* *
9583376 ACAGGCTGAAAATTACAGATCTT
66 ACAGGCAGAAGATTACAGATCTT
* *
9583399 ATCTCCCTAAGTAGTAGTGGAGTAGAT
1 ATCTCCCTAAGCAGTAGTGGAGCAGAT
9583426 TGAAATGAAA
Statistics
Matches: 245, Mismatches: 33, Indels: 19
0.82 0.11 0.06
Matches are distributed among these distances:
83 4 0.02
84 62 0.25
85 4 0.02
86 2 0.01
87 81 0.33
88 91 0.37
89 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (88 bp):
ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAAACCCCTAAGCAGTAGGGTA
ACAGGCAGAAGATTACAGATCTT
Found at i:9583371 original size:175 final size:172
Alignment explanation
Indices: 9583051--9583425 Score: 504
Period size: 175 Copynumber: 2.2 Consensus size: 172
9583041 CACCGGCCAG
* * *
9583051 ATCTCCTCTAAACAGTAGTGGAGCAGATCGAAGATAGCAAGCTTTAATCCTCTAAGCAGTAGGGT
1 ATCTCC-CTAAGCAGTAGTGGAGTAGATCGAAGATAGCAAGCCTTAATCCTCTAAGCAGTAGGGT
* * *
9583116 AACAGGCTGGAAAATACAGATCTCCCTTAAATAGTAGTGGAGCAGATCGAAGTCAGTGAACCTTA
65 AACAGGCTAGAAAATACAGATCTCCCTTAAATAGTAGTGGAGCAGATCAAAGACAGTGAACCTTA
* *
9583181 AACCCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAAATCTT
130 AACCCCTAAGCAGTAGGGAAACAGGCAGAAAATTACAAATCTT
* *
9583224 ATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTAAGCCTTAATCC-CTAAGCAGTAGGGTA
1 ATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATAGCAAGCCTTAATCCTCTAAGCAGTAGGGTA
* * *
9583288 ACAGGC-AGAAGATTACAGATCTTGTCTCTCTAAGA-AGTAGTGGAGCAGATCAAAGACAGTGAG
66 ACAGGCTAGAA-AATACAGATC---TCCCT-TAA-ATAGTAGTGGAGCAGATCAAAGACAGTGAA
* * * *
9583351 CCTTGACCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTT
125 CCTTAAACCCCTAAGCAGTAGGGAAACAGGCAGAAAATTACAAATCTT
*
9583399 ATCTCCCTAAGTAGTAGTGGAGTAGAT
1 ATCTCCCTAAGCAGTAGTGGAGTAGAT
9583426 TGAAATGAAA
Statistics
Matches: 178, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
170 3 0.02
171 30 0.17
172 38 0.21
173 6 0.03
174 4 0.02
175 96 0.54
176 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (172 bp):
ATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATAGCAAGCCTTAATCCTCTAAGCAGTAGGGTA
ACAGGCTAGAAAATACAGATCTCCCTTAAATAGTAGTGGAGCAGATCAAAGACAGTGAACCTTAA
ACCCCTAAGCAGTAGGGAAACAGGCAGAAAATTACAAATCTT
Found at i:9583407 original size:44 final size:43
Alignment explanation
Indices: 9583184--9583415 Score: 129
Period size: 44 Copynumber: 5.3 Consensus size: 43
9583174 AACCTTAAAC
* *
9583184 CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAAATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCTGAAGATTACAGATCTTATCT
** * * *
9583228 CCCTAAGCAGTAGTGGAGTA-GATCGAAGATGGTA-AG-CCTTA-AT
1 CCCTAAGCAGTAG-GGAACAGGCT-GAAGAT--TACAGATCTTATCT
* *
9583271 CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGG-AACAGGCTGAAGATTACAGATCTTATCT
* * * * * * * *
9583315 CTCTAAGAAGTAGTGGAGCA-GATCAA-A-GACAGTGAGCCTTGA-CC
1 CCCTAAGCAGTAG-GGAACAGGCTGAAGATTACA--GA-TCTT-ATCT
*
9583359 CCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCTGAAGATTACAGATCTTATCT
*
9583403 CCCTAAGTAGTAG
1 CCCTAAGCAGTAG
9583416 TGGAGTAGAT
Statistics
Matches: 136, Mismatches: 33, Indels: 38
0.66 0.16 0.18
Matches are distributed among these distances:
41 5 0.04
42 5 0.04
43 34 0.25
44 75 0.55
45 11 0.08
46 3 0.02
47 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGAACAGGCTGAAGATTACAGATCTTATCT
Found at i:9583700 original size:24 final size:24
Alignment explanation
Indices: 9583668--9583713 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
9583658 ACTAAACCGA
9583668 CCACTAACTCCATCACCCCACTTG
1 CCACTAACTCCATCACCCCACTTG
*
9583692 CCACTAACTCTATCACCCCACT
1 CCACTAACTCCATCACCCCACT
9583714 AAACCACCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.50, G:0.02, T:0.22
Consensus pattern (24 bp):
CCACTAACTCCATCACCCCACTTG
Found at i:9584131 original size:21 final size:22
Alignment explanation
Indices: 9584075--9584135 Score: 61
Period size: 24 Copynumber: 2.7 Consensus size: 22
9584065 TTCCATTGGG
**
9584075 TTCTTTAAAATTCATGTTTTTATA
1 TTCTTT-AAATTCAT-TCATTATA
*
9584099 TTATTTATAATTCATTCATTAT-
1 TTCTTTA-AATTCATTCATTATA
9584121 TTCTTTAAATTCATT
1 TTCTTTAAATTCATT
9584136 TGGCATTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 8 0.25
22 6 0.19
23 6 0.19
24 12 0.38
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.59
Consensus pattern (22 bp):
TTCTTTAAATTCATTCATTATA
Found at i:9585205 original size:125 final size:125
Alignment explanation
Indices: 9584970--9585271 Score: 417
Period size: 125 Copynumber: 2.4 Consensus size: 125
9584960 TAAAGAAATC
* * * * * *
9584970 TTTCGTGTTTGGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTTGACTA
1 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTGTTCATTCGACTA
* * * * *
9585035 AAATACAGAATATCCTTTTGAAATTTCGTCTATGTTCTCTTAAATTAAAGTGAGGCAATA
66 AAATACAGAATATCCTTTTGAAATTTCATCCATATTCTCTTAAATTAAAATGAGACAATA
* * *
9585095 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATTGAGCTAGGTTTCGATTGTTCATTCGACTA
1 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTGTTCATTCGACTA
** * * *
9585160 AAATATGGAATATCTTTTTGGAATTTCATCCATATT-TTTTGAAATTAAAATGAGACAATA
66 AAATACAGAATATCCTTTTGAAATTTCATCCATATTCTCTT-AAATTAAAATGAGACAATA
9585220 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATT
1 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATT
9585272 TACCGTTTGG
Statistics
Matches: 154, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
124 3 0.02
125 151 0.98
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (125 bp):
TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTGTTCATTCGACTA
AAATACAGAATATCCTTTTGAAATTTCATCCATATTCTCTTAAATTAAAATGAGACAATA
Found at i:9585297 original size:125 final size:124
Alignment explanation
Indices: 9584970--9585313 Score: 399
Period size: 125 Copynumber: 2.7 Consensus size: 124
9584960 TAAAGAAATC
* * * *
9584970 TTTCGTGTTTGGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTTGACTA
1 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGA-TTTTCATTTGACTA
* * * * * *
9585035 AAATA-CAGAATATCCTTTTGAAATTTCGTCTATGTTCTCTTAAATTAAAGTGAGGCAATA
65 AAATAGCA-AATATCTTTTTGAAATTTCATCCATATTCTCTTAAATTAAAATGAGACAATA
* * * *
9585095 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATTGAGCTAGGTTTCGATTGTTCATTCGACTA
1 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATT-TTCATTTGACTA
* * *
9585160 AAATATG-GAATATCTTTTTGGAATTTCATCCATATT-TTTTGAAATTAAAATGAGACAATA
65 AAATA-GCAAATATCTTTTTGAAATTTCATCCATATTCTCTT-AAATTAAAATGAGACAATA
* * * *
9585220 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTTACCGTTTGGC-C
1 TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTT-TCATTTGACTA
9585284 AAATAGCCAAATATCCTTTTTGAAATTTCA
65 AAATAG-CAAATAT-CTTTTTGAAATTTCA
9585314 AATGCATGAG
Statistics
Matches: 184, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
123 1 0.01
124 11 0.06
125 158 0.86
126 14 0.08
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39
Consensus pattern (124 bp):
TTTCGTATTTGGAAGTTCGATAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTCATTTGACTAA
AATAGCAAATATCTTTTTGAAATTTCATCCATATTCTCTTAAATTAAAATGAGACAATA
Found at i:9593367 original size:56 final size:58
Alignment explanation
Indices: 9593278--9593391 Score: 151
Period size: 56 Copynumber: 2.0 Consensus size: 58
9593268 ACAAAAATGG
*
9593278 TGAAAATGAAGAAATGAGAAACAATTGGAAATGATTATGATTTTCTCCAAAATGAAAA
1 TGAAAATGAAGAAATGAGAAACAATTGGAAATGAATATGATTTTCTCCAAAATGAAAA
* * * * * *
9593336 TGAAAATGGAGAAATG-G-AATATTTGGAAATGAATGTGGTTTTCTTCAAAATGAAAA
1 TGAAAATGAAGAAATGAGAAACAATTGGAAATGAATATGATTTTCTCCAAAATGAAAA
9593392 ATAAAAATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
56 33 0.67
57 1 0.02
58 15 0.31
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.28
Consensus pattern (58 bp):
TGAAAATGAAGAAATGAGAAACAATTGGAAATGAATATGATTTTCTCCAAAATGAAAA
Found at i:9598173 original size:3 final size:3
Alignment explanation
Indices: 9598160--9598199 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
9598150 TCATAGGTTT
*
9598160 GAA GAAA GAA GAA GAA GAA TAA GAA GAA GAA GAA G-A GAA G
1 GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
9598200 GCCAATATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:9603436 original size:29 final size:29
Alignment explanation
Indices: 9603394--9603452 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
9603384 TATCCCTTTC
9603394 TGACAATAATGTATCAACTGAAATAAGAT
1 TGACAATAATGTATCAACTGAAATAAGAT
9603423 TGACAATAATGTATCAACTGAAATAAGAT
1 TGACAATAATGTATCAACTGAAATAAGAT
9603452 T
1 T
9603453 CAATTAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (29 bp):
TGACAATAATGTATCAACTGAAATAAGAT
Found at i:9603656 original size:22 final size:23
Alignment explanation
Indices: 9603614--9603664 Score: 77
Period size: 22 Copynumber: 2.2 Consensus size: 23
9603604 CAAATGAAAA
9603614 TTTTGATCATATTGTTATTTTTATT
1 TTTTGATCATA-T-TTATTTTTATT
9603639 TTTTGATCATA-TTATTTTTATT
1 TTTTGATCATATTTATTTTTATT
9603661 TTTT
1 TTTT
9603665 AAAATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.58
25 11 0.42
ACGTcount: A:0.20, C:0.04, G:0.06, T:0.71
Consensus pattern (23 bp):
TTTTGATCATATTTATTTTTATT
Found at i:9605083 original size:5 final size:5
Alignment explanation
Indices: 9605073--9605104 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
9605063 TTGTGTGTTC
9605073 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
9605105 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:9605087 original size:9 final size:9
Alignment explanation
Indices: 9605073--9605103 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
9605063 TTGTGTGTTC
9605073 TTTATTTTA
1 TTTATTTTA
9605082 TTTATTTTA
1 TTTATTTTA
9605091 TTTTATTTTA
1 -TTTATTTTA
9605101 TTT
1 TTT
9605104 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:9609598 original size:17 final size:19
Alignment explanation
Indices: 9609576--9609623 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
9609566 TTCTATAAGT
9609576 TAAATAAAATAT-TA-AAA
1 TAAATAAAATATATACAAA
9609593 TAAAT-AAATATATACAAA
1 TAAATAAAATATATACAAA
*
9609611 -AAATAAAACATAT
1 TAAATAAAATATAT
9609624 GGCGATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 6 0.22
17 11 0.41
18 10 0.37
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAATAAAATATATACAAA
Found at i:9617259 original size:20 final size:18
Alignment explanation
Indices: 9617221--9617264 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
9617211 AAACCCTAAT
9617221 TTTCCC-TTTTCTTTTTC
1 TTTCCCTTTTTCTTTTTC
9617238 TTTCCCTTTTTCCTTCTTTC
1 TTTCCCTTTTT-CTT-TTTC
9617258 TTTCCCT
1 TTTCCCT
9617265 GCTAATCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
18 4 0.17
19 3 0.12
20 11 0.46
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCCCTTTTTCTTTTTC
Found at i:9617339 original size:14 final size:16
Alignment explanation
Indices: 9617314--9617355 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
9617304 TTTATATCTT
9617314 TTATTCATTATA-ACTA
1 TTATT-ATTATACACTA
9617330 TTA-TATTATATCACTA
1 TTATTATTATA-CACTA
9617346 TTATTATTAT
1 TTATTATTAT
9617356 TATATTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 1 0.04
16 10 0.43
17 6 0.26
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTATTATACACTA
Found at i:9617375 original size:21 final size:21
Alignment explanation
Indices: 9617345--9617388 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
9617335 TTATATCACT
*
9617345 ATTATTATTATTATATT-TTAA
1 ATTATAATTATTAT-TTCTTAA
9617366 ATTATAATTATTATTTCTTAA
1 ATTATAATTATTATTTCTTAA
9617387 AT
1 AT
9617389 ATTAAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATAATTATTATTTCTTAA
Found at i:9624538 original size:34 final size:34
Alignment explanation
Indices: 9624495--9624561 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
9624485 AAGCATGGGA
9624495 TAAAAATATGTATATATTATGGTTGATCAAACAG
1 TAAAAATATGTATATATTATGGTTGATCAAACAG
*
9624529 TAAAAATATGTATATATTATGGTTTATCAAACA
1 TAAAAATATGTATATATTATGGTTGATCAAACA
9624562 TCTTTTCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (34 bp):
TAAAAATATGTATATATTATGGTTGATCAAACAG
Found at i:9632478 original size:30 final size:30
Alignment explanation
Indices: 9632444--9632507 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
9632434 ATTGGAGTAG
*
9632444 AATTTTTAAATTTTAT-AAGTATAAGAAACT
1 AATTTTCAAATTTTATAAAGTATAA-AAACT
*
9632474 AATTTTCAAATTTTATAGAAGTATAATAACT
1 AATTTTCAAATTTTATA-AAGTATAAAAACT
9632505 AAT
1 AAT
9632508 AGTAGAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 15 0.50
31 7 0.23
32 8 0.27
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (30 bp):
AATTTTCAAATTTTATAAAGTATAAAAACT
Found at i:9633901 original size:3 final size:3
Alignment explanation
Indices: 9633893--9633935 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
9633883 GAGTACCAAT
* * * *
9633893 TCA TCA TCA ACA ACA TTA TCA TCA TCT TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
9633936 TAAGGACATC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.30, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:9634754 original size:42 final size:42
Alignment explanation
Indices: 9634695--9634780 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
9634685 AATTGATGTG
9634695 GAAAGCCATTAGGGATGGAGGTATAGGGGTGATATTTGAGCA
1 GAAAGCCATTAGGGATGGAGGTATAGGGGTGATATTTGAGCA
9634737 GAAAGCCATTAGGGATGGAGGTATAGGGGTGATATTTGAGCA
1 GAAAGCCATTAGGGATGGAGGTATAGGGGTGATATTTGAGCA
9634779 GA
1 GA
9634781 GTGAAGGTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.31, C:0.07, G:0.38, T:0.23
Consensus pattern (42 bp):
GAAAGCCATTAGGGATGGAGGTATAGGGGTGATATTTGAGCA
Found at i:9639421 original size:24 final size:24
Alignment explanation
Indices: 9639394--9639441 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
9639384 TTTAGAACAG
*
9639394 GAAGAGATGTTGAAGTCGTAAGTC
1 GAAGAGATGTTGAAGTCGCAAGTC
9639418 GAAGAGATGTTGAAGTCGCAAGTC
1 GAAGAGATGTTGAAGTCGCAAGTC
9639442 CTTTATCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.33, T:0.23
Consensus pattern (24 bp):
GAAGAGATGTTGAAGTCGCAAGTC
Found at i:9645099 original size:50 final size:50
Alignment explanation
Indices: 9645045--9645142 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
9645035 CCATGTGAAC
9645045 ATAGTAAAGAATATGATACAGTTGGCATGCCAGTAGGGTTAGTTGAGCAA
1 ATAGTAAAGAATATGATACAGTTGGCATGCCAGTAGGGTTAGTTGAGCAA
9645095 ATAGTAAAGAATATGATACAGTTGGCATGCCAGTAGGGTTAGTTGAGC
1 ATAGTAAAGAATATGATACAGTTGGCATGCCAGTAGGGTTAGTTGAGC
9645143 GCTTTTATGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.27
Consensus pattern (50 bp):
ATAGTAAAGAATATGATACAGTTGGCATGCCAGTAGGGTTAGTTGAGCAA
Found at i:9649357 original size:27 final size:29
Alignment explanation
Indices: 9649311--9649384 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 29
9649301 GGATTTTTTA
*
9649311 TACATATTTTTTA-TTTAAATTAT-TCTTG
1 TACATATTATTTATTTTAAATT-TCTCTTG
*
9649339 TACA-A-TATTTATTTTAAATTTCTCTTT
1 TACATATTATTTATTTTAAATTTCTCTTG
9649366 TACATATTATTTATTTTAA
1 TACATATTATTTATTTTAA
9649385 GCTCTTTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
26 6 0.15
27 17 0.43
28 5 0.12
29 12 0.30
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.59
Consensus pattern (29 bp):
TACATATTATTTATTTTAAATTTCTCTTG
Found at i:9649487 original size:27 final size:28
Alignment explanation
Indices: 9649448--9649500 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
9649438 CATATTGTAT
*
9649448 ATTTAAAATTTGTTTTATATATTATTTC
1 ATTTAAAATTTGTTTTACATATTATTTC
* *
9649476 ATTTCAAA-TTGTTTTACATTTTATT
1 ATTTAAAATTTGTTTTACATATTATT
9649501 CATGTTAGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (28 bp):
ATTTAAAATTTGTTTTACATATTATTTC
Found at i:9651347 original size:29 final size:28
Alignment explanation
Indices: 9651314--9651368 Score: 101
Period size: 29 Copynumber: 1.9 Consensus size: 28
9651304 GCTAGTTATA
9651314 CTGATTTGGCTTCGAGCCATGAATATCGG
1 CTGATTTGGCTTCGAGCCATG-ATATCGG
9651343 CTGATTTGGCTTCGAGCCATGATATC
1 CTGATTTGGCTTCGAGCCATGATATC
9651369 AGTATTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (28 bp):
CTGATTTGGCTTCGAGCCATGATATCGG
Found at i:9653620 original size:47 final size:46
Alignment explanation
Indices: 9653551--9653678 Score: 175
Period size: 47 Copynumber: 2.7 Consensus size: 46
9653541 TCCGCAGTTT
* *
9653551 ATCTGCTCGACCAGTGGTTTATCCACAACATATTTCAGTCAGTAGTC
1 ATCTGCTCGA-CAGTGGTTTATCCACAACATATTTCAGCCAGCAGTC
* *
9653598 ATCTGCTCAATCAGTGGTTTATCCACAACATATTTTAGCCAGCAGTC
1 ATCTGCTCGA-CAGTGGTTTATCCACAACATATTTCAGCCAGCAGTC
* *
9653645 ATCTGCTCGACTAGTGGTTCATCCACAACGTATT
1 ATCTGCTCGAC-AGTGGTTTATCCACAACATATT
9653679 AGTAGCTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 1 0.01
47 71 0.99
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (46 bp):
ATCTGCTCGACAGTGGTTTATCCACAACATATTTCAGCCAGCAGTC
Found at i:9657508 original size:18 final size:19
Alignment explanation
Indices: 9657487--9657530 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
9657477 GAAAAAGAAG
*
9657487 GAAAAGAAAGGAGATG-GA
1 GAAAAGAAAGGAAATGAGA
*
9657505 GAAATGAAAGGAAATGAGA
1 GAAAAGAAAGGAAATGAGA
*
9657524 GGAAAGA
1 GAAAAGA
9657531 GTGTTGTCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.57, C:0.00, G:0.36, T:0.07
Consensus pattern (19 bp):
GAAAAGAAAGGAAATGAGA
Found at i:9658764 original size:21 final size:21
Alignment explanation
Indices: 9658740--9658782 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
9658730 AGAGAATTTA
9658740 GGGGAACATGGAGACTAAGTT
1 GGGGAACATGGAGACTAAGTT
9658761 GGGGAACATGGAGACTAAGTT
1 GGGGAACATGGAGACTAAGTT
9658782 G
1 G
9658783 CGGCCTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.40, T:0.19
Consensus pattern (21 bp):
GGGGAACATGGAGACTAAGTT
Found at i:9664264 original size:5 final size:5
Alignment explanation
Indices: 9664254--9664294 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
9664244 ATTTGTGAAA
*
9664254 GGGAT GGGAT GGGGAT -GCAT GGGAT GGGAT GGGAT GGGAT G
1 GGGAT GGGAT -GGGAT GGGAT GGGAT GGGAT GGGAT GGGAT G
9664295 ATAATTATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 3 0.09
5 24 0.75
6 5 0.16
ACGTcount: A:0.20, C:0.02, G:0.59, T:0.20
Consensus pattern (5 bp):
GGGAT
Found at i:9673532 original size:3 final size:3
Alignment explanation
Indices: 9673513--9673663 Score: 60
Period size: 3 Copynumber: 49.0 Consensus size: 3
9673503 AATAATGTAT
* * * *
9673513 TAA TAA GAA TTA TAA TAA TATA TAT TAA TAA TAA CAAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA
* ** * * *
9673559 -AA TAA AAA TGGGT TAA TAA -AGA TAA TAG TAA TAA TAGA -AG TAA AAA
1 TAA TAA TAA T--AA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA TAA TAA
* * * *
9673605 CAA TAA TAA TAA TAAA TAAA TAA TAG TAA TAA TGA TAA TAA TACA AAA
1 TAA TAA TAA TAA T-AA T-AA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
9673653 T-A TAA TAA TAA
1 TAA TAA TAA TAA
9673664 CAAATAAATA
Statistics
Matches: 109, Mismatches: 27, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
2 7 0.06
3 85 0.78
4 16 0.15
5 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:9673732 original size:3 final size:3
Alignment explanation
Indices: 9673717--9673834 Score: 52
Period size: 3 Copynumber: 40.7 Consensus size: 3
9673707 TGATAAGGAA
* * * * * *
9673717 AAT AAT AAC AAT AAT -AC AAT AAT AAT AA- AGT AGT AAT AAA AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
9673763 AAT AAC AAT AAT AGT AAA AAT -AT AAT AAAT AAT AGT AA- AAG AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
*
9673806 AAT AAT AA- AATT AACT AAT -TT AAT AAT AA
1 AAT AAT AAT AA-T AA-T AAT AAT AAT AAT AA
9673835 AGTAGCTAAA
Statistics
Matches: 85, Mismatches: 21, Indels: 18
0.69 0.17 0.15
Matches are distributed among these distances:
2 11 0.13
3 66 0.78
4 8 0.09
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:9673742 original size:11 final size:10
Alignment explanation
Indices: 9673717--9673801 Score: 65
Period size: 9 Copynumber: 8.9 Consensus size: 10
9673707 TGATAAGGAA
*
9673717 AATAAT-AAC
1 AATAATAAAT
9673726 AATAATACAAT
1 AATAATA-AAT
9673737 AATAATAAAGT
1 AATAATAAA-T
*
9673748 AGTAATAAA-
1 AATAATAAAT
9673757 AATAA-AAAT
1 AATAATAAAT
*
9673766 AACAAT-AAT
1 AATAATAAAT
*
9673775 AGTAA-AAAT
1 AATAATAAAT
9673784 -ATAATAAAT
1 AATAATAAAT
*
9673793 AATAGTAAA
1 AATAATAAA
9673802 AGAAAATAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.10
9 27 0.45
10 9 0.15
11 18 0.30
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.25
Consensus pattern (10 bp):
AATAATAAAT
Found at i:9673760 original size:23 final size:22
Alignment explanation
Indices: 9673734--9673814 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 22
9673724 ACAATAATAC
* *
9673734 AATAATAATAAAGTAGTAATAAA
1 AATAATAATAAA-TAATAGTAAA
*
9673757 AATAAAAATAACAATAATAGTAAA
1 AATAATAAT-A-AATAATAGTAAA
9673781 AAT-ATAATAAATAATAGTAAA
1 AATAATAATAAATAATAGTAAA
*
9673802 AGAAAATAATAAA
1 A-ATAATAATAAA
9673815 ATTAACTAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
21 13 0.27
22 2 0.04
23 20 0.41
24 12 0.24
25 2 0.04
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.23
Consensus pattern (22 bp):
AATAATAATAAATAATAGTAAA
Found at i:9673813 original size:46 final size:44
Alignment explanation
Indices: 9673714--9673813 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 44
9673704 TAATGATAAG
* * *
9673714 GAAAATAATAACAATAATACAATAATAATAAAGTAGTAATAAAA
1 GAAAATAATAACAATAATAAAAAAATAATAAAGTAATAATAAAA
*
9673758 -ATAAA-AATAACAATAATAGTAAAAATATAATAAA-TAATAGTAAAA
1 GA-AAATAATAACAATAATA--AAAAA-ATAATAAAGTAATAATAAAA
9673803 GAAAATAATAA
1 GAAAATAATAA
9673814 AATTAACTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
43 14 0.30
44 3 0.07
45 15 0.33
46 14 0.30
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (44 bp):
GAAAATAATAACAATAATAAAAAAATAATAAAGTAATAATAAAA
Found at i:9675309 original size:37 final size:37
Alignment explanation
Indices: 9675268--9675387 Score: 96
Period size: 37 Copynumber: 3.1 Consensus size: 37
9675258 CACCTAGTGT
9675268 CTCATTAGCTTAACCGGAGTAAATTGGTACCCAGTAC
1 CTCATTAGCTTAACCGGAGTAAATTGGTACCCAGTAC
* ** * * ** * **
9675305 CTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGT
1 CTCAT-TAGCTTAACCGGAGT-A-AA-TTGGTACCCAGTAC
* *
9675346 CTCATTGGCTTAATCGGAGTAAATTGGTACCCAGTAC
1 CTCATTAGCTTAACCGGAGTAAATTGGTACCCAGTAC
9675383 CTCAT
1 CTCAT
9675388 CGAATTTATC
Statistics
Matches: 57, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
37 19 0.33
38 12 0.21
39 2 0.04
40 10 0.18
41 14 0.25
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (37 bp):
CTCATTAGCTTAACCGGAGTAAATTGGTACCCAGTAC
Found at i:9675347 original size:78 final size:78
Alignment explanation
Indices: 9675214--9675428 Score: 351
Period size: 78 Copynumber: 2.8 Consensus size: 78
9675204 ACATACTAAT
* * * * *
9675214 TTGGCACCCAGTGCATCATCGAA-TAATTCGAAGTAATAAGTTGACACCTAGTGTCTCATTAGCT
1 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCATTAGCT
9675278 TAACCGGAGTAAA
66 TAACCGGAGTAAA
*
9675291 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCATTGGCT
1 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCATTAGCT
*
9675356 TAATCGGAGTAAA
66 TAACCGGAGTAAA
*
9675369 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAATTTGACACCTAGTGTCTCAT
1 TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCAT
9675429 CGGCTCGAAG
Statistics
Matches: 129, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
77 20 0.16
78 109 0.84
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (78 bp):
TTGGTACCCAGTACCTCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTCTCATTAGCT
TAACCGGAGTAAA
Found at i:9675350 original size:41 final size:40
Alignment explanation
Indices: 9675229--9675430 Score: 130
Period size: 41 Copynumber: 5.2 Consensus size: 40
9675219 ACCCAGTGCA
* *
9675229 TCATCGAA-TAATTCGAAGTAATAAGTTGACACCTAGTGTC
1 TCATCGAATTTATCCGAAGTAATAA-TTGACACCTAGTGTC
* ** * * ** * **
9675269 TCAT-TAGCTTAACCGGAGT-A-AATTGGTACCCAGTACC
1 TCATCGAATTTATCCGAAGTAATAATTGACACCTAGTGTC
9675306 TCATCGAATTTATCCGAAGTAATAAGTTGACACCTAGTGTC
1 TCATCGAATTTATCCGAAGTAATAA-TTGACACCTAGTGTC
* ** * * ** * **
9675347 TCATTGGCTTAAT-CGGAGT-A-AATTGGTACCCAGTACC
1 TCATCGAATTTATCCGAAGTAATAATTGACACCTAGTGTC
9675384 TCATCGAATTTATCCGAAGTAATAATTTGACACCTAGTGTC
1 TCATCGAATTTATCCGAAGTAATAA-TTGACACCTAGTGTC
9675425 TCATCG
1 TCATCG
9675431 GCTCGAAGTC
Statistics
Matches: 112, Mismatches: 41, Indels: 17
0.66 0.24 0.10
Matches are distributed among these distances:
37 33 0.29
38 19 0.17
39 5 0.04
40 20 0.18
41 35 0.31
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (40 bp):
TCATCGAATTTATCCGAAGTAATAATTGACACCTAGTGTC
Found at i:9676304 original size:20 final size:20
Alignment explanation
Indices: 9676247--9676312 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 20
9676237 TTTCACCTTA
* *
9676247 TTTTTCTTTCTTCCTTTTCTTC
1 TTTTTCATTCTT-CTTAT-TTC
9676269 TCTTTTCATTCTTCTTATTTC
1 T-TTTTCATTCTTCTTATTTC
9676290 TTTTTCTATTC-TCTTATTTC
1 TTTTTC-ATTCTTCTTATTTC
9676310 TTT
1 TTT
9676313 GTTTTGTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
20 17 0.43
21 8 0.20
22 5 0.12
23 10 0.25
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTTCATTCTTCTTATTTC
Found at i:9677299 original size:26 final size:25
Alignment explanation
Indices: 9677262--9677322 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
9677252 AATGAAAAAT
*
9677262 AAAGAAAGAAAAGTTAAAAGAACAT-A
1 AAAGAAA-AAAAATTAAAAG-ACATAA
* *
9677288 AAAGAAAAAAAATTAAATGACTTAA
1 AAAGAAAAAAAATTAAAAGACATAA
9677313 AAAGAAAAAA
1 AAAGAAAAAA
9677323 TATGGGTACC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.10
25 21 0.68
26 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.11, T:0.13
Consensus pattern (25 bp):
AAAGAAAAAAAATTAAAAGACATAA
Found at i:9678996 original size:17 final size:17
Alignment explanation
Indices: 9678970--9679009 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
9678960 AACTCAAGCC
9678970 AAAA-AAAATACTTAAA
1 AAAACAAAATACTTAAA
*
9678986 AAAACAAAATAGTTAAA
1 AAAACAAAATACTTAAA
*
9679003 ATAACAA
1 AAAACAA
9679010 TGTGCGATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (17 bp):
AAAACAAAATACTTAAA
Found at i:9685889 original size:29 final size:28
Alignment explanation
Indices: 9685839--9685893 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
9685829 ACCTAAATTT
*
9685839 AAAATAAAAAAAAAGAATTAAATTCTTA
1 AAAATAAAAAAAAAGAACTAAATTCTTA
9685867 AAAATTAAAATAAAAA-AACTAAATTCT
1 AAAA-TAAAA-AAAAAGAACTAAATTCT
9685894 AAATTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 4 0.17
29 15 0.62
30 5 0.21
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.25
Consensus pattern (28 bp):
AAAATAAAAAAAAAGAACTAAATTCTTA
Done.