Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 34 of 316
Found at i:9685904 original size:29 final size:30
Alignment explanation
Indices: 9685842--9685907 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
9685832 TAAATTTAAA
*
9685842 ATAAAAAAAAAGAATTAAATTCTTAAAAAT
1 ATAAAAAAAAAGAACTAAATTCTTAAAAAT
**
9685872 -TAAAATAAAAA-AACTAAATTC-TAAATTT
1 ATAAAA-AAAAAGAACTAAATTCTTAAAAAT
9685900 ATAAAAAA
1 ATAAAAAA
9685908 TACATAGAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
28 7 0.23
29 19 0.61
30 5 0.16
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.27
Consensus pattern (30 bp):
ATAAAAAAAAAGAACTAAATTCTTAAAAAT
Found at i:9688011 original size:10 final size:10
Alignment explanation
Indices: 9687998--9688040 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
9687988 ATAAAAATCA
*
9687998 TTAAAAGAAT
1 TTAAAAAAAT
9688008 TTAAAAAAAT
1 TTAAAAAAAT
*
9688018 TTAAAAAAGGT
1 TTAAAAAA-AT
*
9688029 TTAAAAATAT
1 TTAAAAAAAT
9688039 TT
1 TT
9688041 TTTTTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 20 0.71
11 8 0.29
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (10 bp):
TTAAAAAAAT
Found at i:9689708 original size:16 final size:15
Alignment explanation
Indices: 9689685--9689716 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
9689675 TCCCCTCCTC
9689685 TTTCTTTCTTTTTTT
1 TTTCTTTCTTTTTTT
9689700 TTTCATTTCTTTTTTT
1 TTTC-TTTCTTTTTTT
9689716 T
1 T
9689717 CTTTTTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTCTTTCTTTTTTT
Found at i:9689708 original size:20 final size:20
Alignment explanation
Indices: 9689685--9689723 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
9689675 TCCCCTCCTC
9689685 TTTCTTTCTTTTT-TTTTTCA
1 TTTCTTT-TTTTTCTTTTTCA
9689705 TTTCTTTTTTTTCTTTTTC
1 TTTCTTTTTTTTCTTTTTC
9689724 TAAGCATGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTCTTTTTTTTCTTTTTCA
Found at i:9691901 original size:18 final size:18
Alignment explanation
Indices: 9691886--9692025 Score: 120
Period size: 18 Copynumber: 7.8 Consensus size: 18
9691876 TCAGTAACGA
*
9691886 TCAATTGTTTAGTAACAG
1 TCAATTATTTAGTAACAG
*
9691904 TCAGTTATTTAGTAACAG
1 TCAATTATTTAGTAACAG
* *
9691922 TCATTTATTCAGTAACAG
1 TCAATTATTTAGTAACAG
* * *
9691940 TCAATTATTCAGTAATAA
1 TCAATTATTTAGTAACAG
* * * *
9691958 TTAGTTATTCAGTAACAA
1 TCAATTATTTAGTAACAG
* *
9691976 TCATTTATTCAGTAACAG
1 TCAATTATTTAGTAACAG
* *
9691994 TC-ATTTTTTCAGTAGCAG
1 TCAATTATTT-AGTAACAG
*
9692012 TCAGTTATTTAGTA
1 TCAATTATTTAGTA
9692026 CCTTTATTTA
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
17 4 0.04
18 92 0.91
19 5 0.05
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (18 bp):
TCAATTATTTAGTAACAG
Found at i:9691932 original size:54 final size:54
Alignment explanation
Indices: 9691874--9692025 Score: 191
Period size: 54 Copynumber: 2.8 Consensus size: 54
9691864 TATGAATATC
* *
9691874 ATTCAGTAAC-GATCAATTGTTTAGTAACAGTCAGTTATTTAGTAACAGTCATTT
1 ATTCAGTAACAG-TCAATTATTTAGTAACAGTCAGTTATTTAGTAACAATCATTT
* * * * *
9691928 ATTCAGTAACAGTCAATTATTCAGTAATAATTAGTTATTCAGTAACAATCATTT
1 ATTCAGTAACAGTCAATTATTTAGTAACAGTCAGTTATTTAGTAACAATCATTT
* *
9691982 ATTCAGTAACAGTC-ATTTTTTCAGTAGCAGTCAGTTATTTAGTA
1 ATTCAGTAACAGTCAATTATTT-AGTAACAGTCAGTTATTTAGTA
9692026 CCTTTATTTA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 5 0.06
54 76 0.93
55 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (54 bp):
ATTCAGTAACAGTCAATTATTTAGTAACAGTCAGTTATTTAGTAACAATCATTT
Found at i:9691936 original size:36 final size:36
Alignment explanation
Indices: 9691874--9692025 Score: 162
Period size: 36 Copynumber: 4.2 Consensus size: 36
9691864 TATGAATATC
* * *
9691874 ATTCAGTAAC-GATCAATTGTTTAGTAACAGTCAGTT
1 ATTCAGTAACAG-TCATTTATTCAGTAACAGTCAGTT
* *
9691910 ATTTAGTAACAGTCATTTATTCAGTAACAGTCAATT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
* * * * * *
9691946 ATTCAGTAATAATTAGTTATTCAGTAACAATCATTT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
* *
9691982 ATTCAGTAACAGTCATTTTTTCAGTAGCAGTCAGTT
1 ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
*
9692018 ATTTAGTA
1 ATTCAGTA
9692026 CCTTTATTTA
Statistics
Matches: 94, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
36 93 0.99
37 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (36 bp):
ATTCAGTAACAGTCATTTATTCAGTAACAGTCAGTT
Found at i:9692270 original size:44 final size:44
Alignment explanation
Indices: 9692179--9692270 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
9692169 CCGAAGTAAC
*
9692179 AGTAATAGTACGACACACGAAGTGCCTCATCGACACAAAGTCGA
1 AGTAATAGTACGACACACGAAGTGCCTCATCGACACAAAGTCAA
** * **
9692223 AGTAATAGTACGACACTA-TTAGTGCCTCATCGACCCATGGTCAA
1 AGTAATAGTACGACAC-ACGAAGTGCCTCATCGACACAAAGTCAA
9692267 AGTA
1 AGTA
9692271 TCCCTGTACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.21
Consensus pattern (44 bp):
AGTAATAGTACGACACACGAAGTGCCTCATCGACACAAAGTCAA
Found at i:9693043 original size:13 final size:13
Alignment explanation
Indices: 9693027--9693069 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
9693017 ACTTTATATA
9693027 AATATATTATAAT
1 AATATATTATAAT
9693040 AATATAATT-TAAT
1 AATAT-ATTATAAT
9693053 AATATACTTAT-AT
1 AATATA-TTATAAT
9693066 AATA
1 AATA
9693070 AATAAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 22 0.81
14 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (13 bp):
AATATATTATAAT
Found at i:9697562 original size:55 final size:53
Alignment explanation
Indices: 9697475--9697729 Score: 234
Period size: 55 Copynumber: 4.8 Consensus size: 53
9697465 ATTAGGGTTT
* *
9697475 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTTTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTATAAGGC
* * * * * *
9697530 AAGGAAATCATGTAAGACCCTGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TATAAGGC
* * * * *
9697585 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTATAAGGC
* * * *
9697638 AAGGATACCATGTAAGACCATGTCGAGACATGGAAATGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTATAAGGC
* * *
9697687 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
9697730 GTACCCATGT
Statistics
Matches: 165, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
49 36 0.22
50 2 0.01
52 6 0.04
53 43 0.26
54 7 0.04
55 67 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTATAAGGC
Found at i:9697681 original size:108 final size:110
Alignment explanation
Indices: 9697482--9697682 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 110
9697472 TTTAAGGATA
** *
9697482 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTTTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
* * *
9697547 CCCTGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* * *
9697592 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
* *
9697655 CCATGTCGAGACATGGAAATGGTAAGTT
66 CCATGTCAAGACATGGAAATGATAAGTT
9697683 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 47 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:9711055 original size:28 final size:28
Alignment explanation
Indices: 9711015--9711093 Score: 106
Period size: 28 Copynumber: 2.8 Consensus size: 28
9711005 GCAATCAAAT
*
9711015 ATGGCA-TTCAGTGTACGAAATATTGAGA
1 ATGGCACTT-AGTGTGCGAAATATTGAGA
*
9711043 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
**
9711071 ATGAAACTTAGTGTGCGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
9711094 CGAATAATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
28 43 0.96
29 2 0.04
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:9722179 original size:13 final size:13
Alignment explanation
Indices: 9722161--9722200 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
9722151 TCAGTAATCG
9722161 CACACGGGCGTGT
1 CACACGGGCGTGT
9722174 CACACGGGCGTGT
1 CACACGGGCGTGT
9722187 CACACGGGCGTGT
1 CACACGGGCGTGT
9722200 C
1 C
9722201 CTTGTCGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.15, C:0.33, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:9728413 original size:8 final size:9
Alignment explanation
Indices: 9728392--9728423 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
9728382 TACAAAAGTG
9728392 ATGATAACA
1 ATGATAACA
9728401 ATGATAA-A
1 ATGATAACA
9728409 ATGATAACA
1 ATGATAACA
9728418 ATGATA
1 ATGATA
9728424 TTAGTAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (9 bp):
ATGATAACA
Found at i:9728523 original size:23 final size:24
Alignment explanation
Indices: 9728497--9728546 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
9728487 TAAAAAAGGA
9728497 AATAATAATATGGTAA-AAAAAAT
1 AATAATAATATGGTAATAAAAAAT
* * *
9728520 AATAGTAATATGTTAATGAAAAAT
1 AATAATAATATGGTAATAAAAAAT
9728544 AAT
1 AAT
9728547 GGTAATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (24 bp):
AATAATAATATGGTAATAAAAAAT
Found at i:9728546 original size:24 final size:23
Alignment explanation
Indices: 9728497--9728553 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
9728487 TAAAAAAGGA
*
9728497 AATAATAATATGGTAAAAAAAAT
1 AATAGTAATATGGTAAAAAAAAT
* *
9728520 AATAGTAATATGTTAATGAAAAAT
1 AATAGTAATATGGTAA-AAAAAAT
*
9728544 AATGGTAATA
1 AATAGTAATA
9728554 ATAATAATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 14 0.48
24 15 0.52
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (23 bp):
AATAGTAATATGGTAAAAAAAAT
Found at i:9728590 original size:22 final size:22
Alignment explanation
Indices: 9728541--9728597 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
9728531 GTTAATGAAA
*
9728541 AATAATGGTAATAATAATAATG
1 AATAATGGTAATAAAAATAATG
*
9728563 ATTAATGGTAATAAAAATATAT-
1 AATAATGGTAATAAAAATA-ATG
*
9728585 AATAATAGTAATA
1 AATAATGGTAATA
9728598 CGAAGTTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (22 bp):
AATAATGGTAATAAAAATAATG
Found at i:9728829 original size:15 final size:16
Alignment explanation
Indices: 9728776--9728829 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 16
9728766 TATAATGATA
*
9728776 ATATTAATAGAAATAG
1 ATATAAATAGAAATAG
9728792 ATATAAA-AGAAATAG
1 ATATAAATAGAAATAG
*
9728807 CA-AT-AATAGTAATA-
1 -ATATAAATAGAAATAG
9728821 ATATAAATA
1 ATATAAATA
9728830 ATAATATATG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
13 1 0.03
14 4 0.12
15 20 0.62
16 7 0.22
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (16 bp):
ATATAAATAGAAATAG
Found at i:9728940 original size:14 final size:14
Alignment explanation
Indices: 9728921--9728950 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9728911 AAAATAACAC
9728921 TATATATAAACATA
1 TATATATAAACATA
*
9728935 TATATATATACATA
1 TATATATAAACATA
9728949 TA
1 TA
9728951 GAATATAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (14 bp):
TATATATAAACATA
Found at i:9729057 original size:134 final size:141
Alignment explanation
Indices: 9728882--9729133 Score: 333
Period size: 134 Copynumber: 1.8 Consensus size: 141
9728872 GTACATAATA
* *
9728882 ATAATAATAATATTAAAGTAAAGTAAATAAAAATAACACTATATATAAACATATATATATATACA
1 ATAATAATAATATTAAAATAAAGTAAATAAAAATAACACTATATATAAACATATATACATATACA
* * *
9728947 TATA-GA-ATATAAATACAC-ACTA-AT-GT-ATAATAATAATAGTAATAATATTGAAATACAAA
66 TATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATATTGAAATACAAA
9729006 AAAAAGTAAAT
131 AAAAAGTAAAT
* * *
9729017 ATAATAA-AATATTAAAA-ATAAGT-AATGAAGAATAATACTATATATAAATATATATACATATA
1 ATAATAATAATATTAAAATA-AAGTAAAT-AAAAATAACACTATATATAAACATATATACATATA
* *
9729079 CCTATACGATAAAGAAATACACTATTATATGGTAATAATAATAATAATAATAATA
64 CATATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATA
9729134 GAAGATAAAA
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
133 4 0.04
134 49 0.49
135 9 0.09
136 10 0.10
137 3 0.03
138 2 0.02
139 2 0.02
140 20 0.20
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (141 bp):
ATAATAATAATATTAAAATAAAGTAAATAAAAATAACACTATATATAAACATATATACATATACA
TATACGATAAAGAAATACACTACTATATGGTAATAATAATAATAATAATAATATTGAAATACAAA
AAAAAGTAAAT
Found at i:9729119 original size:3 final size:3
Alignment explanation
Indices: 9729111--9729274 Score: 83
Period size: 3 Copynumber: 54.7 Consensus size: 3
9729101 TATTATATGG
9729111 TAA TAA TAA TAA TAA TAA TAA TAGA -AGA TAA -AA -AGA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA TA-A TAA TAA TAA
* * ** * * *
9729156 T-A TAA TAG TAG TAA TAA CCA TGAA -AG TAA AAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
** * * *
9729200 TAA TGG TAA TAA TGA TAA TTAA TAA TAA TAA CAA TAA T-A TAAA TGA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA T-AA TAA
*
9729246 TAA -CA TACA T-A TGAA TAA TAA TAA TAA TA
1 TAA TAA TA-A TAA T-AA TAA TAA TAA TAA TA
9729275 GCAATAATTT
Statistics
Matches: 123, Mismatches: 24, Indels: 28
0.70 0.14 0.16
Matches are distributed among these distances:
2 11 0.09
3 99 0.80
4 13 0.11
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:9729144 original size:134 final size:135
Alignment explanation
Indices: 9728876--9729162 Score: 302
Period size: 134 Copynumber: 2.1 Consensus size: 135
9728866 ATATATGTAC
* *
9728876 ATAATAATAATAATAATATTAAAGTAAAGTAAATAAAAATAACACTATATATAAACATATATATA
1 ATAATAATAATAA-AATATTAAAATAAAGTAAATAAAAATAACACTATATATAAACATATATACA
* * * *
9728941 TATACATATAGAATATAAATACACACTAATGTATAATAATAATAGTAATAATATTGAAATACAAA
65 TATACATATAGAAAAGAAATACACACTAATGTATAATAATAATAATAATAATAATGAAATACAAA
9729006 AAAAAG
130 AAAAAG
* * *
9729012 -TAA-ATATAATAAAATATTAAAA-ATAAGT-AATGAAGAATAATACTATATATAAATATATATA
1 ATAATA-ATAATAAAATATTAAAATA-AAGTAAAT-AAAAATAACACTATATATAAACATATATA
* * * *
9729073 CATATACCTATACGATAAAGAAATACACTATTATATG-GTAATAATAATAATAATAATAAT-AGA
63 CATATACATATA-GA-AAAGAAATACAC-ACTA-ATGTATAATAATAATAATAATAATAATGAAA
* *
9729136 -A-GATAAAAAG
124 TACAAAAAAAAG
*
9729146 ATAATAATAATATAATA
1 ATAATAATAATAAAATA
9729163 GTAGTAATAA
Statistics
Matches: 126, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
133 4 0.03
134 57 0.45
135 26 0.21
136 13 0.10
137 23 0.18
138 3 0.02
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (135 bp):
ATAATAATAATAAAATATTAAAATAAAGTAAATAAAAATAACACTATATATAAACATATATACAT
ATACATATAGAAAAGAAATACACACTAATGTATAATAATAATAATAATAATAATGAAATACAAAA
AAAAG
Found at i:9731456 original size:21 final size:20
Alignment explanation
Indices: 9731430--9731486 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
9731420 TCGAAGACTG
*
9731430 AACAGAAGCACATAAGTGCTA
1 AACAGAAGC-CATAAGGGCTA
* *
9731451 AACAGAAATCCATAAGGGTTA
1 AACAG-AAGCCATAAGGGCTA
9731472 AACAGAAGCTCATAA
1 AACAGAAGC-CATAA
9731487 AAGAGCTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 3 0.10
21 24 0.80
22 3 0.10
ACGTcount: A:0.49, C:0.18, G:0.18, T:0.16
Consensus pattern (20 bp):
AACAGAAGCCATAAGGGCTA
Found at i:9733215 original size:27 final size:27
Alignment explanation
Indices: 9733184--9733274 Score: 155
Period size: 27 Copynumber: 3.4 Consensus size: 27
9733174 AATCATCGTG
* *
9733184 GTTGGATGAGATTAAAAGTTAGCAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
*
9733211 GTTGGAAGAGATTAAAAGTAAGAAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
9733238 GTTGGATGAGATTAAAAGTAAGAAGAT
1 GTTGGATGAGATTAAAAGTAAGAAGAT
9733265 GTTGGATGAG
1 GTTGGATGAG
9733275 TCTTTGATTA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.41, C:0.01, G:0.32, T:0.26
Consensus pattern (27 bp):
GTTGGATGAGATTAAAAGTAAGAAGAT
Found at i:9740872 original size:14 final size:14
Alignment explanation
Indices: 9740853--9740881 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9740843 TAATAAAAAA
9740853 TTAAAATTTGAAAT
1 TTAAAATTTGAAAT
9740867 TTAAAATTTGAAAT
1 TTAAAATTTGAAAT
9740881 T
1 T
9740882 GACTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
TTAAAATTTGAAAT
Found at i:9745738 original size:37 final size:38
Alignment explanation
Indices: 9745686--9745776 Score: 121
Period size: 37 Copynumber: 2.4 Consensus size: 38
9745676 ACCCACTACC
* * *
9745686 GTGGTGTGTAAGGTGGAGGGGCCTATAATAGCCC-TTT
1 GTGGTGTGTAGGGTGGAGGGGCCTACAATAGCCCAATT
* *
9745723 GTGGTGTGTAGGGTGGATGGGCCTACCATAGCCCAATT
1 GTGGTGTGTAGGGTGGAGGGGCCTACAATAGCCCAATT
*
9745761 GTGGTGTGCAGGGTGG
1 GTGGTGTGTAGGGTGG
9745777 TTGGAGTAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 30 0.64
38 17 0.36
ACGTcount: A:0.16, C:0.14, G:0.42, T:0.27
Consensus pattern (38 bp):
GTGGTGTGTAGGGTGGAGGGGCCTACAATAGCCCAATT
Found at i:9748703 original size:6 final size:6
Alignment explanation
Indices: 9748692--9748735 Score: 52
Period size: 6 Copynumber: 6.7 Consensus size: 6
9748682 AAAATTTAGT
9748692 AAATAA AAATAA AAATAA AAATAA ATTGCAATAA AAATAA AAAT
1 AAATAA AAATAA AAATAA AAATAA A----AATAA AAATAA AAAT
9748736 GGCTAAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 28 0.82
10 6 0.18
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:9750633 original size:37 final size:38
Alignment explanation
Indices: 9750584--9750671 Score: 115
Period size: 37 Copynumber: 2.3 Consensus size: 38
9750574 CACTACTGTT
* *
9750584 GTGTGTAGGGTGGACGAGCCTATAATAGCCC-TTTGTG
1 GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
* * * *
9750621 GTGTGTAAGGTGGATGGGCCTACCATAGCCCAATTGTG
1 GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
9750659 GTGTGTAGGGTGG
1 GTGTGTAGGGTGG
9750672 TTGGAGTGGT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 26 0.60
38 17 0.40
ACGTcount: A:0.18, C:0.15, G:0.39, T:0.28
Consensus pattern (38 bp):
GTGTGTAGGGTGGACGAGCCTACAATAGCCCAATTGTG
Found at i:9751568 original size:8 final size:8
Alignment explanation
Indices: 9751555--9751584 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
9751545 AGAAAGATGA
9751555 AGAAGTGT
1 AGAAGTGT
9751563 AGAAGTGT
1 AGAAGTGT
9751571 AGAAGTGT
1 AGAAGTGT
9751579 AGAAGT
1 AGAAGT
9751585 AGGGCTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (8 bp):
AGAAGTGT
Found at i:9759956 original size:13 final size:13
Alignment explanation
Indices: 9759930--9760012 Score: 67
Period size: 13 Copynumber: 6.2 Consensus size: 13
9759920 TTGCGTACAA
*
9759930 GGTTCGCACATAT
1 GGTTCACACATAT
*
9759943 GGTTCACACCTAT
1 GGTTCACACATAT
*
9759956 GTGTTTCGCACATAT
1 G-G-TTCACACATAT
* *
9759971 GGTTCACACTTAG
1 GGTTCACACATAT
*
9759984 GGTTCACATATAT
1 GGTTCACACATAT
* *
9759997 GGGTTCGCACCTAT
1 -GGTTCACACATAT
9760011 GG
1 GG
9760013 GTTTGCACAT
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
13 32 0.59
14 12 0.22
15 10 0.19
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (13 bp):
GGTTCACACATAT
Found at i:9759964 original size:28 final size:27
Alignment explanation
Indices: 9759932--9760022 Score: 96
Period size: 28 Copynumber: 3.3 Consensus size: 27
9759922 GCGTACAAGG
9759932 TTCGCACATATGGTTCACACCTATGTGT
1 TTCGCACATATGGTTCACACCTATG-GT
* *
9759960 TTCGCACATATGGTTCACACTTA-GGG
1 TTCGCACATATGGTTCACACCTATGGT
* * *
9759986 TTCACATATATGGGTTCGCACCTATGGGT
1 TTCGCACATAT-GGTTCACACCTAT-GGT
9760015 TT-GCACAT
1 TTCGCACAT
9760023 TCAAGGGGGT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
26 10 0.20
27 11 0.22
28 26 0.51
29 4 0.08
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (27 bp):
TTCGCACATATGGTTCACACCTATGGT
Found at i:9759975 original size:41 final size:41
Alignment explanation
Indices: 9759930--9760022 Score: 98
Period size: 41 Copynumber: 2.3 Consensus size: 41
9759920 TTGCGTACAA
* * *
9759930 GGTTCGCACATATGGTTCACACCTATGTGTTTCGCACATAT-
1 GGTTCGCACATAGGGTTCACACATATG-GGTTCGCACATATG
* * * *
9759971 GGTTCACACTTAGGGTTCACATATATGGGTTCGCACCTATG
1 GGTTCGCACATAGGGTTCACACATATGGGTTCGCACATATG
*
9760012 GGTTTGCACAT
1 GGTTCGCACAT
9760023 TCAAGGGGGT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
40 11 0.27
41 30 0.73
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (41 bp):
GGTTCGCACATAGGGTTCACACATATGGGTTCGCACATATG
Found at i:9760055 original size:23 final size:23
Alignment explanation
Indices: 9760029--9760196 Score: 80
Period size: 23 Copynumber: 7.2 Consensus size: 23
9760019 ACATTCAAGG
9760029 GGGTTCGCATAAATACATATATA
1 GGGTTCGCATAAATACATATATA
* * * *
9760052 GGGTTCACATAGTACACATAAATA
1 GGGTTCGCATA-AATACATATATA
* * *
9760076 GGGTTCACGT-AATAACATGT-TCA
1 GGGTTCGCATAAAT-ACATATAT-A
* *
9760099 AGGTTCGTATATACACTA-ATATATA
1 GGGTTCGCATA-A-A-TACATATATA
* *
9760124 GGGTTCGCATAAATA-GTCATGTA
1 GGGTTCGCATAAATACAT-ATATA
* * *
9760147 GGGTTCGCATGAATA-ACACATA
1 GGGTTCGCATAAATACATATATA
9760169 GGGTTCGCATAACAATACAT-T-TA
1 GGGTTCGCAT-A-AATACATATATA
9760192 GGGTT
1 GGGTT
9760197 GAAATGTATA
Statistics
Matches: 107, Mismatches: 26, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
22 18 0.17
23 47 0.44
24 23 0.21
25 15 0.14
26 3 0.03
27 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (23 bp):
GGGTTCGCATAAATACATATATA
Found at i:9760194 original size:45 final size:45
Alignment explanation
Indices: 9760121--9760222 Score: 111
Period size: 45 Copynumber: 2.2 Consensus size: 45
9760111 ACACTAATAT
*
9760121 ATAGGGTTCGCATAAATAGTCATGTAGGGTTCG-CATGAAT-AACAC
1 ATAGGGTTCGCATAAATAG-CATGTAGGGTT-GAAATGAATAAACAC
* *
9760166 ATAGGGTTCGCATAACAATA-CATTTAGGGTTGAAATGTATAAACAC
1 ATAGGGTTCGCAT-A-AATAGCATGTAGGGTTGAAATGAATAAACAC
*
9760212 ATAGAGTTCGC
1 ATAGGGTTCGC
9760223 TTGATATTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
44 1 0.02
45 28 0.57
46 16 0.33
47 4 0.08
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (45 bp):
ATAGGGTTCGCATAAATAGCATGTAGGGTTGAAATGAATAAACAC
Found at i:9762978 original size:25 final size:25
Alignment explanation
Indices: 9762949--9763003 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
9762939 ATATGATATC
9762949 AATGTATAATGAATTTGGACAAATT
1 AATGTATAATGAATTTGGACAAATT
9762974 AATGTATAATGAATTTGGACAAATT
1 AATGTATAATGAATTTGGACAAATT
*
9762999 GATGT
1 AATGT
9763004 CTATGTATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (25 bp):
AATGTATAATGAATTTGGACAAATT
Found at i:9763689 original size:13 final size:13
Alignment explanation
Indices: 9763671--9763708 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
9763661 TTTTACTCTT
9763671 GATTTTA-TAAAAA
1 GATTTTACT-AAAA
9763684 GATTTTACTAAAA
1 GATTTTACTAAAA
*
9763697 GATTTTGCTAAA
1 GATTTTACTAAA
9763709 TTTATGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 22 0.96
14 1 0.04
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (13 bp):
GATTTTACTAAAA
Found at i:9782207 original size:16 final size:16
Alignment explanation
Indices: 9782171--9782201 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9782161 GTCCATTTAA
9782171 TTTTTAATTTATTTTC
1 TTTTTAATTTATTTTC
*
9782187 TTTTTAGTTTATTTT
1 TTTTTAATTTATTTT
9782202 TATTTTTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTTAATTTATTTTC
Found at i:9783771 original size:14 final size:14
Alignment explanation
Indices: 9783718--9783762 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
9783708 TTAATTATCA
*
9783718 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
9783732 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
*
9783746 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
9783760 TTA
1 TTA
9783763 AGGTGTAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:9783909 original size:22 final size:25
Alignment explanation
Indices: 9783847--9783895 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
9783837 TAAAATTTAA
*
9783847 GGGTTAGGGGTTAATGATTAGGGTC
1 GGGTTAGGGGTTAAGGATTAGGGTC
9783872 GGGTTAGGGGTTAAGGATTAGGGT
1 GGGTTAGGGGTTAAGGATTAGGGT
9783896 GTGTAGGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.47, T:0.31
Consensus pattern (25 bp):
GGGTTAGGGGTTAAGGATTAGGGTC
Found at i:9785116 original size:159 final size:157
Alignment explanation
Indices: 9784827--9785172 Score: 455
Period size: 159 Copynumber: 2.2 Consensus size: 157
9784817 AGATTAGTGC
* * *
9784827 CGTTTTTTTAAAAAAACGCCGCAAAAAATAGTATAGTTTAAAGAAAACGGCATCGTTTTAGTTGG
1 CGTTTTTTT-AAAAAACGCCGCAAAAAACAGTATAGTTTAAAGAAAACGGCACCGTTTTAGTTAG
* * *
9784892 ATAGGGGATTAGTGGCGTTTTGAAAAACGCCGTAACAGAATTAAAGTGTACTGGAAGCGTTGTCG
65 ATAGGGGATTAGTGGCGTTTTGAAAAACGCCGCAAAAGAATTAAAGTGTACTGGAAGCGTCGTCG
9784957 TTTTAGTTGAATATATAGGGGATTAGCAG
130 TTTTAGTTGAATATATA-GGGATTAGCAG
* * **
9784986 CGTTTTTTTAAAAAACACCGCAAAAGACAGTATTAGTTTAAAGAAAACGGTGCCGTTTTAGTATA
1 CGTTTTTTTAAAAAACGCCGCAAAAAACAGTA-TAGTTTAAAGAAAACGGCACCGTTTTAGT-TA
* * * * *
9785051 G-TAGTGTATTAGTGGCGCTTTT-AAAAATGCCGCAAAAGAATTAAAGTTTACTGTACA-CGTCG
64 GATAGGGGATTAGTGGCG-TTTTGAAAAACGCCGCAAAAGAATTAAAGTGTACTGGA-AGCGTCG
*
9785113 TCGTTTTAGTTGAATATATAGGGATTAGCGG
127 TCGTTTTAGTTGAATATATAGGGATTAGCAG
* *
9785144 CGTTTTTTTAATAAACGCCGCAAATAACA
1 CGTTTTTTTAAAAAACGCCGCAAAAAACA
9785173 TTAATGCTTA
Statistics
Matches: 163, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
158 55 0.34
159 101 0.62
160 7 0.04
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (157 bp):
CGTTTTTTTAAAAAACGCCGCAAAAAACAGTATAGTTTAAAGAAAACGGCACCGTTTTAGTTAGA
TAGGGGATTAGTGGCGTTTTGAAAAACGCCGCAAAAGAATTAAAGTGTACTGGAAGCGTCGTCGT
TTTAGTTGAATATATAGGGATTAGCAG
Found at i:9786898 original size:8 final size:8
Alignment explanation
Indices: 9786885--9786927 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
9786875 TGATTATGAT
9786885 AATAGTGG
1 AATAGTGG
9786893 AATAGTGG
1 AATAGTGG
*
9786901 AATAGTGT
1 AATAGTGG
* *
9786909 AATAGAGT
1 AATAGTGG
9786917 AATAGTGG
1 AATAGTGG
9786925 AAT
1 AAT
9786928 TTTTTGATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (8 bp):
AATAGTGG
Found at i:9787782 original size:5 final size:5
Alignment explanation
Indices: 9787774--9787803 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
9787764 GTATTTAAAG
9787774 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
9787804 ATCACGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:9787792 original size:53 final size:53
Alignment explanation
Indices: 9787726--9788032 Score: 260
Period size: 53 Copynumber: 6.1 Consensus size: 53
9787716 TTTTGTCTAC
9787726 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
** ** * ** *
9787779 TTTTATTTTA-TTTTATTTTATTTTAATCACGAA--AAA-ACT-TTT---G-TCTA
1 TTTTATTTTATTTTTAAATTA-CCTAATTA--AATTAAATTGTATTTAAAGTTTTA
9787826 CTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
1 -TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
*
9787880 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
** * **** * *
9787933 TTTTA-TTTA-TTTTATTTTA-ATGCCGAAA--AAA--CT-TTT---G-TCTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
9787974 CTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
1 -TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
9788028 TTTTA
1 TTTTA
9788033 AATATTTTAT
Statistics
Matches: 192, Mismatches: 36, Indels: 52
0.69 0.13 0.19
Matches are distributed among these distances:
41 3 0.02
42 5 0.03
43 4 0.02
44 8 0.04
45 7 0.04
46 3 0.02
47 6 0.03
48 22 0.11
49 10 0.05
50 10 0.05
51 11 0.06
52 13 0.07
53 82 0.43
54 6 0.03
55 2 0.01
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (53 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTA
Found at i:9787932 original size:101 final size:100
Alignment explanation
Indices: 9787726--9787940 Score: 274
Period size: 101 Copynumber: 2.1 Consensus size: 100
9787716 TTTTGTCTAC
9787726 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
** ** ** *
9787791 TTATTTTATTTTAATCACGAAAAAACTTTTGTCTAC
66 TTAAATTATCCTAATCAC-AAAAAACTTTTGTAAAA
9787827 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTA-T
* * *
9787892 TTTAAATTA-CCTAATTA-AATTAAA-TTGTATTTAAAA
65 TTTAAATTATCCTAATCACAA-AAAACTT-T-TGTAAAA
9787928 TTTTATTTTATTT
1 TTTTATTTTATTT
9787941 ATTTTATTTT
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
99 4 0.04
100 4 0.04
101 84 0.84
102 8 0.08
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (100 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
TTAAATTATCCTAATCACAAAAAACTTTTGTAAAA
Found at i:9787994 original size:95 final size:99
Alignment explanation
Indices: 9787880--9788110 Score: 339
Period size: 105 Copynumber: 2.3 Consensus size: 99
9787870 TAAAGTTTTA
9787880 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA-A-TTT-TATTTTA-TTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATATTTTATATTTTATTTT
9787941 ATTTTATTTTAATGC-CGAA-AAAACTTTTGTCTAC
66 ATTTTATTTTAAT-CACGAAGAAAA-TTTTGTCTAC
9787975 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA----TATTTT--ATATTT
*
9788040 TATTTTATTTTATTTTAATCACGAAGAATATTTTGTCTAC
60 TATTTTATTTTATTTTAATCACGAAGAAAATTTTGTCTAC
9788080 TTTTATTTTATTTTTAAATTACCTAATTAAA
1 TTTTATTTTATTTTTAAATTACCTAATTAAA
9788111 AATAACCGAT
Statistics
Matches: 123, Mismatches: 1, Indels: 14
0.89 0.01 0.10
Matches are distributed among these distances:
95 47 0.38
100 1 0.01
101 3 0.02
104 8 0.07
105 61 0.50
106 3 0.02
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (99 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATATTTTATATTTTATTTT
ATTTTATTTTAATCACGAAGAAAATTTTGTCTAC
Found at i:9787999 original size:148 final size:150
Alignment explanation
Indices: 9787726--9788032 Score: 548
Period size: 148 Copynumber: 2.0 Consensus size: 150
9787716 TTTTGTCTAC
9787726 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA----TATTTTATTTTATT
9787791 TTATTTTATTTTAATCACGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTA
62 TTATTTTATTTTAATCACGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTA
9787856 AATTAAATTGTATTTAAAGTTTTA
127 AATTAAATTGTATTTAAAGTTTTA
9787880 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA-ATTTTATTTTA-TTTAT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATATTTTATTTTATTTTAT
9787943 TTTATTTTAATGC-CGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAT
66 TTTATTTTAAT-CACGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAT
9788007 TAAATTGTATTTAAAGTTTTA
130 TAAATTGTATTTAAAGTTTTA
9788028 TTTTA
1 TTTTA
9788033 AATATTTTAT
Statistics
Matches: 152, Mismatches: 0, Indels: 8
0.95 0.00 0.05
Matches are distributed among these distances:
148 93 0.61
149 12 0.08
154 47 0.31
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (150 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATATTTTATTTTATTTTAT
TTTATTTTAATCACGAAAAAACTTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATT
AAATTGTATTTAAAGTTTTA
Found at i:9788325 original size:10 final size:9
Alignment explanation
Indices: 9788309--9788415 Score: 85
Period size: 9 Copynumber: 11.7 Consensus size: 9
9788299 AAATATATAT
*
9788309 CATATTTTA
1 CATAATTTA
9788318 CATAATTTA
1 CATAATTTA
*
9788327 CATAACTTA
1 CATAATTTA
9788336 CATAA--TA
1 CATAATTTA
9788343 CATAAATATATA
1 CAT-AAT-T-TA
9788355 TCAT-ATCTTA
1 -CATAAT-TTA
9788365 CATAATTTA
1 CATAATTTA
**
9788374 CATAATTCG
1 CATAATTTA
* *
9788383 GATAACTTA
1 CATAATTTA
9788392 CATAATTTA
1 CATAATTTA
*
9788401 CATAACTTA
1 CATAATTTA
9788410 CATAAT
1 CATAAT
9788416 ACATAAATAT
Statistics
Matches: 78, Mismatches: 13, Indels: 14
0.74 0.12 0.13
Matches are distributed among these distances:
7 5 0.06
8 2 0.03
9 59 0.76
10 4 0.05
11 3 0.04
12 2 0.03
13 3 0.04
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (9 bp):
CATAATTTA
Found at i:9788336 original size:18 final size:18
Alignment explanation
Indices: 9788315--9788415 Score: 98
Period size: 18 Copynumber: 5.5 Consensus size: 18
9788305 ATATCATATT
9788315 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
*
9788333 TTACATAA--TACATAAA
1 TTACATAATTTACATAAC
* *
9788349 TATATATCATATCTTACATAAT
1 T-TACAT-A-AT-TTACATAAC
***
9788371 TTACATAATTCGGATAAC
1 TTACATAATTTACATAAC
9788389 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
9788407 TTACATAAT
1 TTACATAAT
9788416 ACATAAATAT
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
16 8 0.12
17 4 0.06
18 38 0.58
19 3 0.05
20 1 0.02
21 4 0.06
22 8 0.12
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.39
Consensus pattern (18 bp):
TTACATAATTTACATAAC
Found at i:9793502 original size:13 final size:14
Alignment explanation
Indices: 9793486--9793514 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9793476 TTATAAATAT
9793486 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
9793499 TTATAATGGTTTAA
1 TTATAATGGTTTAA
9793513 TT
1 TT
9793515 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:9793948 original size:21 final size:21
Alignment explanation
Indices: 9793923--9793978 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
9793913 AACTTAGAGA
9793923 AGCGGCAGCAGCGAGAGAGGC
1 AGCGGCAGCAGCGAGAGAGGC
9793944 AGCGGCAGCAGCGAGAGAGGC
1 AGCGGCAGCAGCGAGAGAGGC
*
9793965 AGAGGCAGCAGCGA
1 AGCGGCAGCAGCGA
9793979 TGGCAGTAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.30, C:0.23, G:0.46, T:0.00
Consensus pattern (21 bp):
AGCGGCAGCAGCGAGAGAGGC
Found at i:9794261 original size:30 final size:31
Alignment explanation
Indices: 9794227--9794291 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
9794217 TGTATTTTTT
** *
9794227 ATGCTACATTTGCT-TTTTTGGTTGGATTTC
1 ATGCTACATTTGCTGTTTTAAGTTGGATTTA
* *
9794257 ATGCTATATTTTCTGTTTTAAGTTGGATTTA
1 ATGCTACATTTGCTGTTTTAAGTTGGATTTA
9794288 ATGC
1 ATGC
9794292 AGGAAGGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 12 0.41
31 17 0.59
ACGTcount: A:0.18, C:0.11, G:0.18, T:0.52
Consensus pattern (31 bp):
ATGCTACATTTGCTGTTTTAAGTTGGATTTA
Found at i:9795072 original size:13 final size:13
Alignment explanation
Indices: 9795051--9795121 Score: 72
Period size: 13 Copynumber: 5.5 Consensus size: 13
9795041 AAATTTTTCC
9795051 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
9795064 AAAGTACTTCTCA
1 AAAGCACTTCTCA
*
9795077 AAAGCACTTTTCCA
1 AAAGCACTTCT-CA
** *
9795091 CCA-CACTTTTCA
1 AAAGCACTTCTCA
*
9795103 AAAGCACTTTTCA
1 AAAGCACTTCTCA
9795116 AAAGCA
1 AAAGCA
9795122 ATGAAGAACT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
12 3 0.06
13 43 0.88
14 3 0.06
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.27
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:9798184 original size:28 final size:27
Alignment explanation
Indices: 9798150--9798251 Score: 100
Period size: 28 Copynumber: 3.7 Consensus size: 27
9798140 CTTACACCCG
9798150 ATCTCGCACACATAGTGCTCAGTTAATA
1 ATCTCGCACACATAGTGCTC-GTTAATA
* **
9798178 ATTTCGCACACATAGTGC-C-TTACACCCG
1 ATCTCGCACACATAGTGCTCGTTA-A--TA
* *
9798206 ATCTCGCACACATAGTGCTCGGCTACTA
1 ATCTCGCACACATAGTGCTC-GTTAATA
9798234 ATCTCGCACACATAGTGC
1 ATCTCGCACACATAGTGC
9798252 ATATATTCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 1 0.02
28 52 0.87
29 1 0.02
31 2 0.03
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (27 bp):
ATCTCGCACACATAGTGCTCGTTAATA
Found at i:9798204 original size:56 final size:56
Alignment explanation
Indices: 9798129--9798251 Score: 201
Period size: 56 Copynumber: 2.2 Consensus size: 56
9798119 AATTTTGCAT
* * *
9798129 ACACACAGTGCCTTACACCCGATCTCGCACACATAGTGCTCAGTTAATAATTTCGC
1 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCAGCTAATAATCTCGC
* *
9798185 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGCTACTAATCTCGC
1 ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCAGCTAATAATCTCGC
9798241 ACACATAGTGC
1 ACACATAGTGC
9798252 ATATATTCAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (56 bp):
ACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCAGCTAATAATCTCGC
Found at i:9805907 original size:28 final size:28
Alignment explanation
Indices: 9805873--9805974 Score: 113
Period size: 28 Copynumber: 3.6 Consensus size: 28
9805863 CTTACACCCG
9805873 ATCTCGCACACATAGTGCTCGGTTAACA
1 ATCTCGCACACATAGTGCTCGGTTAACA
* *
9805901 ATTTCGCACACATAGTGC-C--TTACACCCG
1 ATCTCGCACACATAGTGCTCGGTTA-A--CA
*
9805929 ATCTCACACACATAGTGCTCGGTT-ACAA
1 ATCTCGCACACATAGTGCTCGGTTAAC-A
9805957 ATCTCGCACACATAGTGC
1 ATCTCGCACACATAGTGC
9805975 ATATATTCAT
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 2 0.03
28 51 0.84
29 2 0.03
31 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (28 bp):
ATCTCGCACACATAGTGCTCGGTTAACA
Found at i:9805930 original size:56 final size:56
Alignment explanation
Indices: 9805851--9805974 Score: 196
Period size: 56 Copynumber: 2.2 Consensus size: 56
9805841 TAATTTTGCA
* * * *
9805851 CACACACAATGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTA-ACAATTTCG
1 CACACATAGTGCCTTACACCCGATCTCACACACATAGTGCTCGGTTACA-AATCTCG
9805907 CACACATAGTGCCTTACACCCGATCTCACACACATAGTGCTCGGTTACAAATCTCG
1 CACACATAGTGCCTTACACCCGATCTCACACACATAGTGCTCGGTTACAAATCTCG
9805963 CACACATAGTGC
1 CACACATAGTGC
9805975 ATATATTCAT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
56 62 0.98
57 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.15, T:0.23
Consensus pattern (56 bp):
CACACATAGTGCCTTACACCCGATCTCACACACATAGTGCTCGGTTACAAATCTCG
Found at i:9813393 original size:16 final size:16
Alignment explanation
Indices: 9813372--9813402 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9813362 TGTCAATATC
9813372 GTGACGCATAAAAATA
1 GTGACGCATAAAAATA
9813388 GTGACGCATAAAAAT
1 GTGACGCATAAAAAT
9813403 TTGTAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (16 bp):
GTGACGCATAAAAATA
Found at i:9826863 original size:46 final size:46
Alignment explanation
Indices: 9826802--9827114 Score: 381
Period size: 46 Copynumber: 7.0 Consensus size: 46
9826792 TTTCTGTCAT
* *
9826802 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
9826848 GTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
9826894 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* **
9826940 GTTGCCATGGTATCTTTCAACCATGGCCTTACACATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* ** * *
9826986 GTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* ** *
9827032 GTTGTCATGGTATCTTT----C----TCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
** *
9827070 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATGTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
9827115 GAGAGCACAC
Statistics
Matches: 239, Mismatches: 20, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
38 35 0.15
42 2 0.01
46 202 0.85
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:9826903 original size:92 final size:92
Alignment explanation
Indices: 9826802--9827100 Score: 434
Period size: 92 Copynumber: 3.3 Consensus size: 92
9826792 TTTCTGTCAT
9826802 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
**
9826867 ACCATGGTCTTATTCATTTCATATCAG
66 ACCATGGTCTTACACATTTCATATCAG
*
9826894 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
* *
9826959 ACCATGGCCTTACACATTTCATATCAC
66 ACCATGGTCTTACACATTTCATATCAG
* ** * * * *
9826986 GTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGTCATGGTATCTTT--
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
9827049 --C----TCTTACACATTTCATATCAG
66 ACCATGGTCTTACACATTTCATATCAG
9827070 GTTGCCATGGTATCTTTCAACCATGGTCTTA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTA
9827101 CACATGTCAT
Statistics
Matches: 191, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
84 48 0.25
88 1 0.01
92 142 0.74
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (92 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCA
ACCATGGTCTTACACATTTCATATCAG
Found at i:9826960 original size:138 final size:138
Alignment explanation
Indices: 9826754--9827114 Score: 443
Period size: 138 Copynumber: 2.6 Consensus size: 138
9826744 TTTGACATGA
* * * *
9826754 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCCATGGTATCTT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGTTGCCATGGTATCTT
** * * **
9826818 TCAACCATGGTCTTATTCTTTTCATGTCACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCA
61 TCAACCATGGTCTTACACATTTCATATCACGTTGTCATGGTATCTTTCAACCATGGTCTTACACA
9826883 TTTCATATCAGGT
126 TTTCATATCAGGT
9826896 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
*
9826961 CATGGCCTTACACATTTCATATCACGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCATATCACGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
9827026 TATTAGGT
131 TATCAGGT
* ** * * *
9827034 TGTCATGGTATCTTT----C----TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
*
9827091 CATGGTCTTACACATGTCATATCA
66 CATGGTCTTACACATTTCATATCA
9827115 GAGAGCACAC
Statistics
Matches: 198, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
130 58 0.29
134 1 0.01
137 5 0.03
138 109 0.55
139 1 0.01
141 1 0.01
142 23 0.12
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAGGT
Found at i:9827063 original size:38 final size:38
Alignment explanation
Indices: 9827012--9827087 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
9827002 TCAACCATGG
* *
9827012 TCTTACACATTTCATATTAGGTTGTCATGGTATCTTTC
1 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTC
9827050 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTC
1 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTC
9827088 AACCATGGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (38 bp):
TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTC
Found at i:9829294 original size:16 final size:18
Alignment explanation
Indices: 9829265--9829305 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
9829255 TCATCCTTTC
9829265 TTTCTTTTTCTATT-CTT
1 TTTCTTTTTCTATTCCTT
9829282 TTTCTTTTT-TATTCCTT
1 TTTCTTTTTCTATTCCTT
*
9829299 TTACTTT
1 TTTCTTT
9829306 ATATATGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTTCTATTCCTT
Found at i:9842957 original size:44 final size:44
Alignment explanation
Indices: 9842894--9843197 Score: 175
Period size: 44 Copynumber: 6.8 Consensus size: 44
9842884 GCCACATCAG
* * * *
9842894 ATCTCCTTGAAATTTCAGTGGAGTTGATTGAAGTCACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTCACAAGTCTT
* * *
9842938 ATCTCCCTGAAGTTGCAGTGGAGTAAACTAAAGAT-ATTCAA-TCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-TCA--CAAGTCTT
* ** * * *
9842983 ATTTCCCTGAAGTTGCAGTGGAACAGATTGGAGCTGAATTACAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-T-CA-CA-AG-TCTT
* * * * *
9843032 ATCTCCCTGAGGTTGCAGTGGAGCAGATCGAAGTCATTAA-CCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTCA-CAAGTCTT
* * * **
9843076 ATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAACCACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTCACAAGTCTT
* * ** * * *
9843120 ATCTCCTTGAAGTCGCAGTGGAACAGACTAAAGAT-AGCAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-TCA-CAAGTCTT
* * **
9843165 ATTTCTCTGAAGTTGCAGTGGAACAGATTGAAG
1 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG
9843198 CTATAAATTA
Statistics
Matches: 204, Mismatches: 45, Indels: 21
0.76 0.17 0.08
Matches are distributed among these distances:
43 2 0.01
44 91 0.45
45 66 0.32
46 6 0.03
47 6 0.03
48 1 0.00
49 32 0.16
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTCACAAGTCTT
Found at i:9843251 original size:137 final size:137
Alignment explanation
Indices: 9843110--9843403 Score: 435
Period size: 137 Copynumber: 2.1 Consensus size: 137
9843100 AGGTTAAAAC
* * * *
9843110 CACAAGTCTTATCTCCTTGAAGTCGCAGTGGAACAGACTAAAGATAGCAAATCTTATTTCTCTGA
1 CACAAGTCTTATCTCCTTGAAGTCACAATGGAACAGACTAAAGATAGCAAATCTCATTTCCCTGA
** * *
9843175 AGTTGCAGTGGAACAGATTGAAGCTATAAATTATAGATCTCATCTCTCTAAAGTTGCAATAGAGT
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTAAAGTTGCAATAGAGC
9843240 AGATCAA
131 AGATCAA
* * *
9843247 CACAAGTCTTATCTCCCTGAAGTTACAATGGAGCAGACTAAAGATAGCAAATCTCATTTCCCTGA
1 CACAAGTCTTATCTCCTTGAAGTCACAATGGAACAGACTAAAGATAGCAAATCTCATTTCCCTGA
* *
9843312 AGTTGTAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTTGCAATAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTAAAGTTGCAATAGAGC
9843377 AGATCAA
131 AGATCAA
* ** *
9843384 AACAAACCCTATCTCCTTGA
1 CACAAGTCTTATCTCCTTGA
9843404 GATTGCAGTG
Statistics
Matches: 139, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
137 139 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (137 bp):
CACAAGTCTTATCTCCTTGAAGTCACAATGGAACAGACTAAAGATAGCAAATCTCATTTCCCTGA
AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTAAAGTTGCAATAGAGC
AGATCAA
Found at i:9843324 original size:182 final size:181
Alignment explanation
Indices: 9842928--9843328 Score: 434
Period size: 182 Copynumber: 2.2 Consensus size: 181
9842918 TGATTGAAGT
* * ** * *
9842928 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAACTAAAGATATTCAATCTTATTTCCCTGA
1 CACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATATGCAATCTTATTTCCCTGA
* * * * * * *
9842993 AGTTGCAGTGGAACAGATTGGAGCTGAATTACAGATCTTATCTCCCTGAGGTTGCAGTGGAGCAG
66 AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTCATCTCCCTAAAGTTGCAATAGAGCAG
* * * **
9843058 ATCGAAGTCATTAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAAC
131 ATCGAAG-CATCAACCTTATCTCCCTGAAGTTACAATGGAGCAGACTAAAAC
* * * * *
9843110 CACAAGTCTTATCTCCTTGAAGTCGCAGTGGAACAGACTAAAGATA-GCAAATCTTATTTCTCTG
1 CACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATATGC-AATCTTATTTCCCTG
* *
9843174 AAGTTGCAGTGGAACAGATTGAAGCTATAAATTATAGATCTCATCTCTCTAAAGTTGCAATAGAG
65 AAGTTGCAGTGGAACAGATTGAAGC--TAAATTACAGATCTCATCTCCCTAAAGTTGCAATAGAG
* *
9843239 TAGATC-AA-CA-CAAGTCTTATCTCCCTGAAGTTACAATGGAGCAGACTAAAGA-
128 CAGATCGAAGCATCAA-CCTTATCTCCCTGAAGTTACAATGGAGCAGACTAAA-AC
* * *
9843291 TAGCAAATCTCATTTCCCTGAAGTTGTAGTGGAACAGA
1 CA-CAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGA
9843329 TTGAAGCTAT
Statistics
Matches: 183, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
180 2 0.01
181 35 0.19
182 109 0.60
183 2 0.01
184 35 0.19
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (181 bp):
CACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATATGCAATCTTATTTCCCTGA
AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTCATCTCCCTAAAGTTGCAATAGAGCAG
ATCGAAGCATCAACCTTATCTCCCTGAAGTTACAATGGAGCAGACTAAAAC
Found at i:9845058 original size:28 final size:28
Alignment explanation
Indices: 9845026--9845087 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
9845016 TCATATTAAC
*
9845026 ATTATACCATGTATATA-ATTTTATAA-AT
1 ATTATA-CATATATATATATTTT-TAATAT
*
9845054 ATTATATATATATATATATTTTTAATAT
1 ATTATACATATATATATATTTTTAATAT
9845082 ATTATA
1 ATTATA
9845088 TATTGTGTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 11 0.37
28 19 0.63
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (28 bp):
ATTATACATATATATATATTTTTAATAT
Found at i:9845088 original size:28 final size:27
Alignment explanation
Indices: 9845037--9845090 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
9845027 TTATACCATG
9845037 TATATAATTTTATAAATATTATATATA
1 TATATAATTTTATAAATATTATATATA
9845064 TATATATATTTT-TAATATATTATATAT
1 TATATA-ATTTTATAA-ATATTATATAT
9845091 TGTGTACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 9 0.36
28 16 0.64
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TATATAATTTTATAAATATTATATATA
Found at i:9846177 original size:132 final size:132
Alignment explanation
Indices: 9845940--9846179 Score: 363
Period size: 132 Copynumber: 1.8 Consensus size: 132
9845930 GGAGTCGATG
* * *
9845940 TTCGATGTTTAGCAATTCGGGAAATCTTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCCCA
1 TTCGATGTTCAGCAATTCGGGAAATCATGCCCTATCGTGCAGGGTTGCAATTTCTCGTTTGCCCA
* * *
9846005 AAATAATCGAATATCTCTTTAGAATTTCGTTCATATTTTCTAAAAACTTTTTAAAACGAAGGAAA
66 AAATAATCGAATATCCCTTTAGAATTTCATTCATAGTTTCTAAAAACTTTTTAAAACGAAGGAAA
9846070 TA
131 TA
* * * *
9846072 TTCGATGTTCGGCAATTCGGGGAATCATGCCCTATCGTGCAGGGTTGCAATTTCTTGTTTGCGCA
1 TTCGATGTTCAGCAATTCGGGAAATCATGCCCTATCGTGCAGGGTTGCAATTTCTCGTTTGCCCA
* * *
9846137 AAATAATCGAATATCCCTTTGGAATTTCATTCGTGGTTTCTAA
66 AAATAATCGAATATCCCTTTAGAATTTCATTCATAGTTTCTAA
9846180 GGCGAGGCAA
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 95 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (132 bp):
TTCGATGTTCAGCAATTCGGGAAATCATGCCCTATCGTGCAGGGTTGCAATTTCTCGTTTGCCCA
AAATAATCGAATATCCCTTTAGAATTTCATTCATAGTTTCTAAAAACTTTTTAAAACGAAGGAAA
TA
Found at i:9850224 original size:46 final size:46
Alignment explanation
Indices: 9850173--9850402 Score: 388
Period size: 46 Copynumber: 5.0 Consensus size: 46
9850163 TTTCTGTCAT
**
9850173 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
** * * *
9850219 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
9850265 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
9850311 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
9850357 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
9850403 AGAGCACACT
Statistics
Matches: 176, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 176 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:9850283 original size:92 final size:92
Alignment explanation
Indices: 9850125--9850402 Score: 396
Period size: 92 Copynumber: 3.0 Consensus size: 92
9850115 TTTGACATGA
* * * *
9850125 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCCATGGTATCTT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGTTGCCATGGTATCTT
**
9850189 TCAACCATGGTCTTATTCATTTCATATCAGGT
61 TCAACCATGGTCTTACACATTTCATATCAGGT
9850221 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
*
9850286 CATGGTCTTACACATTTCATATCACGT
66 CATGGTCTTACACATTTCATATCAGGT
** * * *
9850313 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
9850378 CATGGTCTTACACATTTCATATCAG
66 CATGGTCTTACACATTTCATATCAG
9850403 AGAGCACACT
Statistics
Matches: 168, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
91 5 0.03
92 138 0.82
93 1 0.01
95 1 0.01
96 23 0.14
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAGGT
Found at i:9852502 original size:16 final size:16
Alignment explanation
Indices: 9852483--9852521 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
9852473 AATTTTTCCC
*
9852483 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
*
9852499 TTTTCCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
9852515 TCTTTCC
1 TTTTTCC
9852522 CCTGCTCTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:9852579 original size:16 final size:18
Alignment explanation
Indices: 9852550--9852590 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
9852540 TCATCCTTTC
9852550 TTTCTTTTTCTATT-CTT
1 TTTCTTTTTCTATTCCTT
9852567 TTTCTTTTT-TATTCCTT
1 TTTCTTTTTCTATTCCTT
*
9852584 TTACTTT
1 TTTCTTT
9852591 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTTCTATTCCTT
Found at i:9853469 original size:6 final size:6
Alignment explanation
Indices: 9853458--9853484 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9853448 GTTCCTCTAT
9853458 TTTTCC TTTTCC TTTTCC TTTTCC TTT
1 TTTTCC TTTTCC TTTTCC TTTTCC TTT
9853485 GTCTCTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTCC
Found at i:9855532 original size:7 final size:7
Alignment explanation
Indices: 9855510--9855543 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
9855500 ATTGATTAAT
9855510 ATTTAGAA
1 ATTTAG-A
9855518 ATTTTAGA
1 A-TTTAGA
9855526 ATTTAGA
1 ATTTAGA
9855533 ATTTAGA
1 ATTTAGA
9855540 ATTT
1 ATTT
9855544 TCTTATGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 17 0.68
8 3 0.12
9 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (7 bp):
ATTTAGA
Found at i:9855914 original size:20 final size:20
Alignment explanation
Indices: 9855889--9855926 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9855879 TATTTGTTTT
9855889 AAATA-TTTAACAAGAATGAA
1 AAATATTTTAA-AAGAATGAA
9855909 AAATATTTTAAAAGAATG
1 AAATATTTTAAAAGAATG
9855927 TTTACTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.29
Consensus pattern (20 bp):
AAATATTTTAAAAGAATGAA
Found at i:9856904 original size:25 final size:25
Alignment explanation
Indices: 9856856--9856904 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
9856846 AATTTAATTT
*
9856856 AAAAAAATAAAAATTAAATTGATAG
1 AAAAAAATAAAAATTAAATAGATAG
*
9856881 AAAAAATATAAACATTAAA-AGATA
1 AAAAAA-ATAAAAATTAAATAGATA
9856905 AAATTATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.22
Consensus pattern (25 bp):
AAAAAAATAAAAATTAAATAGATAG
Found at i:9862064 original size:16 final size:18
Alignment explanation
Indices: 9862028--9862066 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
9862018 AATTTTTAAA
*
9862028 AAAATCAAAATAATTTTT
1 AAAATCAAAATAATATTT
9862046 AAAAT-AAAA-AATATTT
1 AAAATCAAAATAATATTT
9862062 AAAAT
1 AAAAT
9862067 TTTTCAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 4 0.20
18 5 0.25
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATCAAAATAATATTT
Found at i:9862070 original size:26 final size:26
Alignment explanation
Indices: 9862039--9862091 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
9862029 AAATCAAAAT
9862039 AATTTTT-AAAA-TAAAAAATATTTAA
1 AATTTTTCAAAATTAAAAAAT-TTTAA
*
9862064 AATTTTTCAAAATTTAAAAATTTTAA
1 AATTTTTCAAAATTAAAAAATTTTAA
9862090 AA
1 AA
9862092 AAATTATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 7 0.28
26 11 0.44
27 7 0.28
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
AATTTTTCAAAATTAAAAAATTTTAA
Found at i:9862080 original size:17 final size:16
Alignment explanation
Indices: 9862058--9862091 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
9862048 AATAAAAAAT
*
9862058 ATTTAAAATTTTTCAAA
1 ATTTAAAAATTTT-AAA
9862075 ATTTAAAAATTTTAAA
1 ATTTAAAAATTTTAAA
9862091 A
1 A
9862092 AAATTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTAAAAATTTTAAA
Found at i:9862090 original size:9 final size:9
Alignment explanation
Indices: 9862052--9862112 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
9862042 TTTTAAAATA
9862052 AAAAATATTT
1 AAAAAT-TTT
*
9862062 AAAATTTTT
1 AAAAATTTT
*
9862071 CAAAA-TTT
1 AAAAATTTT
9862079 AAAAATTTT
1 AAAAATTTT
*
9862088 AAAAAAATTAT
1 --AAAAATTTT
*
9862099 AAAAATTTC
1 AAAAATTTT
9862108 AAAAA
1 AAAAA
9862113 ATAAAAATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
8 7 0.17
9 21 0.51
10 5 0.12
11 8 0.20
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (9 bp):
AAAAATTTT
Found at i:9862108 original size:36 final size:37
Alignment explanation
Indices: 9862050--9862122 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 37
9862040 ATTTTTAAAA
* **
9862050 TAAAAAATATTTAAAATTTTTCAAAATTTAAAAATTT
1 TAAAAAATATTTAAAATATTTCAAAAAATAAAAATTT
9862087 TAAAAAA-ATTATAAAA-ATTTCAAAAAATAAAAATTT
1 TAAAAAATATT-TAAAATATTTCAAAAAATAAAAATTT
9862123 GATATATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 20 0.62
37 12 0.38
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (37 bp):
TAAAAAATATTTAAAATATTTCAAAAAATAAAAATTT
Found at i:9862114 original size:19 final size:19
Alignment explanation
Indices: 9862050--9862113 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 19
9862040 ATTTTTAAAA
9862050 TAAAAAATATTT-AAAATTT
1 TAAAAAA-ATTTAAAAATTT
**
9862069 T-TCAAAATTTAAAAATTT
1 TAAAAAAATTTAAAAATTT
9862087 TAAAAAAATTATAAAAATTT
1 TAAAAAAATT-TAAAAATTT
*
9862107 CAAAAAA
1 TAAAAAA
9862114 TAAAAATTTG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 4 0.11
18 11 0.30
19 7 0.19
20 15 0.41
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAAAAATTTAAAAATTT
Found at i:9862743 original size:27 final size:28
Alignment explanation
Indices: 9862690--9862744 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
9862680 TTTTTTATCG
*
9862690 AATTTATCAAAAAAAATTTAAACTTTTA
1 AATTTATCAAAAAAAATATAAACTTTTA
*
9862718 AATTTAT-AATAAAAATAATAAA-TTTTA
1 AATTTATCAAAAAAAAT-ATAAACTTTTA
9862745 CACACAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (28 bp):
AATTTATCAAAAAAAATATAAACTTTTA
Found at i:9862870 original size:19 final size:19
Alignment explanation
Indices: 9862824--9862861 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
9862814 AATCTCTCTC
9862824 AATAAA-AATTTTTAAAAA
1 AATAAATAATTTTTAAAAA
9862842 AATCAAAATAATTTTTAAAA
1 AAT--AAATAATTTTTAAAA
9862862 GGATAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
20 3 0.18
21 11 0.65
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (19 bp):
AATAAATAATTTTTAAAAA
Found at i:9862904 original size:17 final size:17
Alignment explanation
Indices: 9862865--9862903 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
9862855 TTTAAAAGGA
*
9862865 TAAATATTTAAAAATTT
1 TAAAAATTTAAAAATTT
*
9862882 TCAAAATTT-AAAATTT
1 TAAAAATTTAAAAATTT
9862898 TAAAAA
1 TAAAAA
9862904 AAATTATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAAAATTTAAAAATTT
Found at i:9862923 original size:20 final size:19
Alignment explanation
Indices: 9862884--9862925 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
9862874 AAAAATTTTC
*
9862884 AAAATTTAAAATTTTAAAA
1 AAAATTTAAAAATTTAAAA
9862903 AAAATTATAAAAATTTCAAAA
1 AAAATT-TAAAAATTT-AAAA
9862924 AA
1 AA
9862926 TAAAATTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 8 0.40
21 6 0.30
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATTTAAAAATTTAAAA
Found at i:9863472 original size:22 final size:25
Alignment explanation
Indices: 9863412--9863481 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 25
9863402 ATCCCCAACA
9863412 AAATCTTTTCTTTTATCATAAAATTG
1 AAATC-TTTCTTTTATCATAAAATTG
9863438 AAAATCTTTTCTTTTATCATAAAATTG
1 -AAATC-TTTCTTTTATCATAAAATTG
9863465 -AA-C-TTCTTTTATACATA
1 AAATCTTTCTTTTAT-CATA
9863482 CCTGAAAAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.21
23 4 0.10
24 1 0.02
25 2 0.05
27 26 0.62
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (25 bp):
AAATCTTTCTTTTATCATAAAATTG
Found at i:9863474 original size:27 final size:27
Alignment explanation
Indices: 9863411--9863466 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
9863401 GATCCCCAAC
9863411 AAAATCTTTTCTTTTATCATAAAATTG
1 AAAATCTTTTCTTTTATCATAAAATTG
9863438 AAAATCTTTTCTTTTATCATAAAATTG
1 AAAATCTTTTCTTTTATCATAAAATTG
9863465 AA
1 AA
9863467 CTTCTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (27 bp):
AAAATCTTTTCTTTTATCATAAAATTG
Found at i:9863745 original size:839 final size:836
Alignment explanation
Indices: 9861997--9864463 Score: 4144
Period size: 839 Copynumber: 3.0 Consensus size: 836
9861987 AAAAATGAGC
**
9861997 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAATAAAAAATATTT
1 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATTT
* *
9862062 AAAATTTTTCAAAATTTAAAAATTTT-AAAAAAATTATAAAAATTTCAAAAAATAAAAATTTGAT
66 AAAAATTTTCAAAATTT-AAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAA-TT-CT
*
9862126 ATATATATATAAAGTTT-AAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAG
128 ATATATATATAAAGTTTAAAAAAATTGAGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAG
* *
9862190 TTCTATCTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAA
193 TTCTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACATTTTCAAAATTTAAAA
* *
9862255 TTTTAGTTACCCACAATTAAATACTTAACAAAAAGTTGATGCAATCCTTTTTATATTGGCCTAAT
258 TTTTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAAT
* *
9862320 AATAAATTTAGTTCTCCAATGTTTATACATTTTATCAAATTGATCCTAAATCTAAAAATTCAACA
323 AATAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATA
* * *
9862385 GATTTAGCCCTTAATGTTTACGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTA
388 GATTGAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTA
9862450 CAAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAA
453 CAAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAA
*
9862515 TAAAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGC
518 TAAAAATTCATTTTTATCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGC
*
9862580 GATTTAGAAGAT-CCC--C---A-----------A-C--------AAAATCTTTTCTTTTATCAT
583 GATATAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAAATCTTTTCTTTTATCAT
9862619 AAAATTGAACTTCTTTTATACATACCTGATAAAGGGTGAGTAACATATAAGAGAAATATGATTTT
648 AAAATTGAACTTCTTTTATACATACCTGA-AAAGGGTGAGTAACATATAAGAGAAATATGATTTT
*
9862684 TTATCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATAAAAATAATAAATTTTACACA
712 TTATCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATAAAAATGATAAATTTTACACA
*
9862749 CAAATACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAAA
777 CAAGTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAAA
*
9862809 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAAGGATAAATATTT
1 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATTT
9862874 AAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAAT-AAAATTCGATA
66 AAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAATTC--TA
9862938 TATATATATAAAGTTTAAAAAAATTGAGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGT
129 TATATATATAAAGTTTAAAAAAATTGAGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGT
9863003 TCTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACATTTTCAAAATTTAAAAT
194 TCTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACATTTTCAAAATTTAAAAT
*
9863068 TTTAGTCACTCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATA
259 TTTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATA
9863133 ATAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAG
324 ATAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAG
*
9863198 ATTGAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTTATTTTAAAAAATCAATAAATTTAC
389 ATTGAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTAC
9863263 AAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAAT
454 AAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAAT
9863328 AAAAATTCATTTTTATCATTTAGAAGCTGC-TTGAAAAGCATATGCAATAGCTTTTTTAAATAGC
519 AAAAATTCATTTTTATCATTTAGAAGCT-CTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGC
9863392 GATATAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTGAAAATCTTTTCTTTTATCA
583 GATATAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATT-AAAATCTTTTCTTTTATCA
9863457 TAAAATTGAACTTCTTTTATACATACCTGAAAAAGGGTGAGTAACATATAAGAGAAATATGATTT
647 TAAAATTGAACTTCTTTTATACATACCTG-AAAAGGGTGAGTAACATATAAGAGAAATATGATTT
*
9863522 TTTATCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATGAAAATGATAAATTTTACAC
711 TTTATCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATAAAAATGATAAATTTTACAC
9863587 ACAAGTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAAA
776 ACAAGTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAAA
*
9863648 AAATTAATTTCTCTCAATAAAAATTTTTAAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
1 AAATTAATCTCTCTCAATAAAAATTTTT-AAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
9863713 TAAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTAT
65 TAAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTAT
* *
9863778 ATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTT
130 ATATATATAAAGTTTAAAAAAATTGAGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTT
*
9863843 CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATT
195 CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACATTTTCAAAATTTAAAATT
9863908 TTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
260 TTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
9863973 TAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGA
325 TAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGA
* * *
9864038 TTTAGCCCTTAGTGTTTATGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
390 TTGAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
*
9864103 AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTTAAAAAATCAATA
455 AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATA
* *
9864168 AAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCTA
520 AAAATTCATTTTTATCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCGA
*
9864233 TTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATT-AAA-C--TTC-TTT-T-AT-A
585 TATAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAAATCTTTTCTTTTATCATAA
*
9864290 CA-T--AC--C-----T--A-A--T--AAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTA
650 AATTGAACTTCTTTTATACATACCTGAAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTA
9864338 TCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATAAAAATGATAAATTTTACACACAA
715 TCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATAAAAATGATAAATTTTACACACAA
9864403 GTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTTAAAAA
780 GTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAA-TTTAAAAA
9864461 AAA
1 AAA
9864464 ATAAACTTCT
Statistics
Matches: 1580, Mismatches: 38, Indels: 73
0.93 0.02 0.04
Matches are distributed among these distances:
810 2 0.00
811 30 0.02
812 689 0.44
813 15 0.01
815 2 0.00
817 1 0.00
818 2 0.00
820 1 0.00
825 1 0.00
827 2 0.00
829 2 0.00
830 3 0.00
831 2 0.00
832 1 0.00
833 3 0.00
834 3 0.00
836 1 0.00
837 3 0.00
838 1 0.00
839 719 0.46
840 90 0.06
841 7 0.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.38
Consensus pattern (836 bp):
AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATTT
AAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTATA
TATATATAAAGTTTAAAAAAATTGAGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTTC
TATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACATTTTCAAAATTTAAAATTT
TAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAAT
AAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGAT
TGAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACAA
AATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATAA
AAATTCATTTTTATCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCGAT
ATAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAAATCTTTTCTTTTATCATAAA
ATTGAACTTCTTTTATACATACCTGAAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTAT
CGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATAAAAATGATAAATTTTACACACAAG
TACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAAA
Found at i:9863763 original size:20 final size:19
Alignment explanation
Indices: 9863724--9863765 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
9863714 AAAAATTTTC
*
9863724 AAAATTTAAAATTTTAAAA
1 AAAATTTAAAAATTTAAAA
9863743 AAAATTATAAAAATTTCAAAA
1 AAAATT-TAAAAATTT-AAAA
9863764 AA
1 AA
9863766 TAAAAATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 8 0.40
21 6 0.30
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATTTAAAAATTTAAAA
Found at i:9864386 original size:812 final size:811
Alignment explanation
Indices: 9861997--9864463 Score: 4321
Period size: 812 Copynumber: 3.0 Consensus size: 811
9861987 AAAAATGAGC
**
9861997 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAATAAAAAATATTT
1 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATTT
* *
9862062 AAAATTTTTCAAAATTTAAAAATTTT-AAAAAAATTATAAAAATTTCAAAAAATAAAAATTTGAT
66 AAAAATTTTCAAAATTT-AAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAA-TT-CT
9862126 ATATATATATAAAG-TTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAG
128 ATATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAG
*
9862190 TTCTATCTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAA
193 TTCTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAA
* *
9862255 TTTTAGTTACCCACAATTAAATACTTAACAAAAAGTTGATGCAATCCTTTTTATATTGGCCTAAT
258 TTTTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAAT
* *
9862320 AATAAATTTAGTTCTCCAATGTTTATACATTTTATCAAATTGATCCTAAATCTAAAAATTCAACA
323 AATAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATA
*
9862385 GATTTAGCCCTTAATGTTTACGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTA
388 GATTTAGCCCTTAGTGTTTACGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTA
9862450 CAAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAA
453 CAAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAA
9862515 TAAAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGC
518 TAAAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGC
*
9862580 GATTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTGAACTTCTTTTATACATACC
583 GATTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAACTTCTTTTATACATACC
*
9862645 TGATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTA
648 TAATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTA
* *
9862710 AACTTTTAAATTTATAATAAAAATAATAAATTTTACACACAAATACTTTTAGATAAATGTTTATT
713 AACTTTTAAATTTATAATAAAAATGATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATT
9862775 GCTATAAATATTACAAAGTGAATTAATTTAAAAA
778 GCTATAAATATTACAAAGTGAATTAATTTAAAAA
*
9862809 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAAGGATAAATATTT
1 AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATTT
9862874 AAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAAT-AAAATTCGATA
66 AAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAATTC--TA
* *
9862938 TATATATATAAAGTTTAAAAAAATTGAGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGT
129 TATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGT
*
9863003 TCTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACATTTTCAAAATTTAAAAT
194 TCTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAAT
*
9863068 TTTAGTCACTCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATA
259 TTTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATA
9863133 ATAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAG
324 ATAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAG
* * *
9863198 ATTGAGCCCTTAGTGTTTACGAAATTTGTCATTTAGTTTTTATTTTAAAAAATCAATAAATTTAC
389 ATTTAGCCCTTAGTGTTTACGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTAC
9863263 AAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAAT
454 AAAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAAT
*
9863328 AAAAATTCATTTTTATCATTTAGAAGCTGC-TTGAAAAGCATATGCAATAGCTTTTTTAAATAGC
519 AAAAATTCATTTTTGTCATTTAGAAGCT-CTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGC
*
9863392 GATATAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTGAAAATCTTTTCTTTTATCA
583 GATTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATT--AAA-C--TTC-TTT-T-A
*
9863457 TAAAATTGAACTTCTTTTATACATACCTGAAAAAGGGTGAGTAACATATAAGAGAAATATGATTT
640 T-ACA-T--AC--C-----T--A-A--T---AAAGGGTGAGTAACATATAAGAGAAATATGATTT
*
9863522 TTTATCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATGAAAATGATAAATTTTACAC
686 TTTATCGAATTTATCAAAAAAAATTTAAACTTTTAAATTTATAATAAAAATGATAAATTTTACAC
9863587 ACAAGTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAAA
751 ACAAGTACTTTTAGATAAATGTTTATTGCTATAAATATTACAAAGTGAATTAATTTAAAAA
*
9863648 AAATTAATTTCTCTCAATAAAAATTTTTAAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
1 AAATTAATCTCTCTCAATAAAAATTTTT-AAAAAAATCAAAATAATTTTTAAAAGGAAAAATATT
9863713 TAAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTAT
65 TAAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTAT
9863778 ATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTT
130 ATATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTT
9863843 CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATT
195 CTATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATT
9863908 TTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
260 TTAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAA
9863973 TAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGA
325 TAAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGA
*
9864038 TTTAGCCCTTAGTGTTTATGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
390 TTTAGCCCTTAGTGTTTACGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACA
*
9864103 AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTTAAAAAATCAATA
455 AAATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATA
*
9864168 AAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCTA
520 AAAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCGA
9864233 TTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAACTTCTTTTATACATACCTA
585 TTTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAACTTCTTTTATACATACCTA
9864298 ATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTAAA
650 ATAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTAAA
9864363 CTTTTAAATTTATAATAAAAATGATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATTGC
715 CTTTTAAATTTATAATAAAAATGATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATTGC
9864428 TATAAATATTACAAAGTGAATTAATTTTAAAAA
780 TATAAATATTACAAAGTGAATTAA-TTTAAAAA
9864461 AAA
1 AAA
9864464 ATAAACTTCT
Statistics
Matches: 1577, Mismatches: 42, Indels: 71
0.93 0.02 0.04
Matches are distributed among these distances:
810 2 0.00
811 27 0.02
812 724 0.46
813 12 0.01
814 2 0.00
815 2 0.00
817 4 0.00
818 4 0.00
819 1 0.00
820 3 0.00
821 2 0.00
822 1 0.00
824 2 0.00
825 1 0.00
826 1 0.00
827 2 0.00
829 1 0.00
830 2 0.00
831 3 0.00
832 1 0.00
833 3 0.00
834 4 0.00
836 2 0.00
837 3 0.00
838 1 0.00
839 671 0.43
840 89 0.06
841 7 0.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.38
Consensus pattern (811 bp):
AAATTAATCTCTCTCAATAAAAATTTTTAAAAAAATCAAAATAATTTTTAAAAGGAAAAATATTT
AAAAATTTTCAAAATTTAAAATTTTAAAAAAAATTATAAAAATTTCAAAAAATAAAAATTCTATA
TATATATAAAGTTTTAAAAAATTGGGTAAATTACCTGGGTGATCACCCAACTTTTGGGTAAGTTC
TATTTTGGTCACCCAACTTCAAAAACTTTCAATTTCATCACCAACGTTTTCAAAATTTAAAATTT
TAGTCACCCACAATTAAATACTTAACAAAAAGTTGATGCGATCCTTTTTATATTGGCCTAATAAT
AAATTTAGTTCTCCAATGTTTGTACATTTTATCAAATTGATCCTAAATCTAAAAATTCAATAGAT
TTAGCCCTTAGTGTTTACGAAATTTTTCATTTAGTTTTAATTTTAAAAAATCAATAAATTTACAA
AATTTTCCAATTTAATTTTAATTCTAAAATTTTAAAAAATAAAAATATTTTAAAAAAATCAATAA
AAATTCATTTTTGTCATTTAGAAGCTCTTTGAAAAGCATATGCAATAGCTTTTTTAAATAGCGAT
TTAGAAGATCCCCAACAAAATCTTTTCTTTTATCATAAAATTAAACTTCTTTTATACATACCTAA
TAAAGGGTGAGTAACATATAAGAGAAATATGATTTTTTATCGAATTTATCAAAAAAAATTTAAAC
TTTTAAATTTATAATAAAAATGATAAATTTTACACACAAGTACTTTTAGATAAATGTTTATTGCT
ATAAATATTACAAAGTGAATTAATTTAAAAA
Found at i:9864394 original size:27 final size:28
Alignment explanation
Indices: 9864341--9864395 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
9864331 TTTTTTATCG
*
9864341 AATTTATCAAAAAAAATTTAAACTTTTA
1 AATTTATCAAAAAAAATATAAACTTTTA
*
9864369 AATTTAT-AATAAAAATGATAAA-TTTTA
1 AATTTATCAAAAAAAAT-ATAAACTTTTA
9864396 CACACAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (28 bp):
AATTTATCAAAAAAAATATAAACTTTTA
Found at i:9867331 original size:23 final size:22
Alignment explanation
Indices: 9867280--9867344 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 22
9867270 GTTTTAAAAT
* *
9867280 TTGGGCTCAGGTAGTTTTA-GGA
1 TTGGGCT-AGGTTGGTTTAGGGA
9867302 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGG-A
9867325 TTGGGCTAGGTTGGTTTAGG
1 TTGGGCTAGGTTGGTTTAGG
9867345 CTTGGTTTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
21 9 0.23
22 9 0.23
23 21 0.54
ACGTcount: A:0.14, C:0.06, G:0.42, T:0.38
Consensus pattern (22 bp):
TTGGGCTAGGTTGGTTTAGGGA
Found at i:9894831 original size:15 final size:15
Alignment explanation
Indices: 9894811--9894853 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
9894801 AAAAAACTCA
9894811 GAAAAACAGGTACAC
1 GAAAAACAGGTACAC
9894826 GAAAAAC---T-CA-
1 GAAAAACAGGTACAC
9894836 GAAAAACAGGTACAC
1 GAAAAACAGGTACAC
9894851 GAA
1 GAA
9894854 TTCAGTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 2 0.09
12 1 0.04
13 1 0.04
14 2 0.09
15 10 0.43
ACGTcount: A:0.56, C:0.19, G:0.19, T:0.07
Consensus pattern (15 bp):
GAAAAACAGGTACAC
Found at i:9894835 original size:25 final size:25
Alignment explanation
Indices: 9894802--9894853 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
9894792 GTTCGGAAGA
9894802 AAAAACTCAGAAAAACAGGTACACG
1 AAAAACTCAGAAAAACAGGTACACG
9894827 AAAAACTCAGAAAAACAGGTACACG
1 AAAAACTCAGAAAAACAGGTACACG
9894852 AA
1 AA
9894854 TTCAGTTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.58, C:0.19, G:0.15, T:0.08
Consensus pattern (25 bp):
AAAAACTCAGAAAAACAGGTACACG
Found at i:9897288 original size:20 final size:19
Alignment explanation
Indices: 9897249--9897288 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9897239 GTTTTTGTTT
*
9897249 TTAAATTTAGAAAAATAAG
1 TTAAATTTAGAAAAAGAAG
*
9897268 TTAATTTTAGAAAAACGAAG
1 TTAAATTTAGAAAAA-GAAG
9897288 T
1 T
9897289 GGTAAAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.33
Consensus pattern (19 bp):
TTAAATTTAGAAAAAGAAG
Found at i:9898085 original size:165 final size:164
Alignment explanation
Indices: 9897813--9898145 Score: 438
Period size: 165 Copynumber: 2.0 Consensus size: 164
9897803 TTAATATTTT
* *
9897813 TTTATATTTATATAATTAGGACAAAAATCAGATTATTGAAACGTATACACACAACTTAAGTGCAA
1 TTTATATTTATATAATTAGGACAAAAATCAGATTATCGAAACATATACACACAACTTAAGTGCAA
*
9897878 GAGCACTGTCTATTATTAAAAAAAACTTGGAAGAGGCGGGATTTGTTTACGT-GTCTC-GTATCC
66 GAGCACTGTCTATTATTAAAAAAAACTTGGAAGAGGCGGGA-TT-TTTACCTAGTC-CAGTATCC
* *
9897941 TTGGTAGGACTAAATTGGAGCCAACACTTATTAGTGC
128 TTGGCAGGACTAAATTGGAGCCAACACTTATCAGTGC
** * * *
9897978 TTTATATTTATATAATTAGGATGAAGATCAGATTATCGAAACATATACACACAATTTAAGTGTGA
1 TTTATATTTATATAATTAGGACAAAAATCAGATTATCGAAACATATACACACAACTTAAGTG-CA
* ** * * *
9898043 A-AGCACTGTCTATTATTGAGCAACACTTGGAAGAGGCGGGATTTTTGCCTAGTCCAGTATGCTT
65 AGAGCACTGTCTATTATTAAAAAAAACTTGGAAGAGGCGGGATTTTTACCTAGTCCAGTATCCTT
* * *
9898107 GGCGGGACTAAATTGGAGCCCACACTTATCAGTGT
130 GGCAGGACTAAATTGGAGCCAACACTTATCAGTGC
9898142 TTTA
1 TTTA
9898146 CTGGAAAGAT
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
163 6 0.04
164 46 0.32
165 92 0.63
166 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (164 bp):
TTTATATTTATATAATTAGGACAAAAATCAGATTATCGAAACATATACACACAACTTAAGTGCAA
GAGCACTGTCTATTATTAAAAAAAACTTGGAAGAGGCGGGATTTTTACCTAGTCCAGTATCCTTG
GCAGGACTAAATTGGAGCCAACACTTATCAGTGC
Found at i:9908375 original size:479 final size:480
Alignment explanation
Indices: 9907459--9908418 Score: 1510
Period size: 479 Copynumber: 2.0 Consensus size: 480
9907449 CCTCGCCCCA
* * * * *
9907459 AAACCTTAATGAAGTCACAAGATTGACTTGCAGGAGAGAATTGATGAAGATTAACCTAAATTCTA
1 AAACCTCAATGAACTCACAAGATTAACTTGCAGGAGAGAATCGATGAAGATTAACCTAAATTCCA
*
9907524 TACGAAGTATATCTACTTGTGGGAACATAGGTATCATTTCTTACTTATGCATGAACCAATTGTCA
66 TACCAAGTATATCTACTTGTGGGAACATAGGTATCATTTCTTACTTATGCATGAACCAATTGTCA
* * * *
9907589 GATTAGATTTGGCGACATTTTCGGATTACATGACATTGTTTAGACTTTATGGTAAGTCATATCTA
131 GATCAGATTTGGCGACATCTGCGGATTACATGACATTGTTTAGACTTCATGGTAAGTCATATCTA
* *
9907654 TTACCAGAGGAGGAAAAGAGATACAAATTCATCGTAAAAGGCCAACACGACCCTACATGAGGTTG
196 TTACCAGAGGAGGAAAAGAAAGACAAATTCATCGTAAAAGGCCAACACGACCCTACATGAGGTTG
* * *
9907719 CGACCGGGAGTACATGCATCGGGTTCATCATCATCATCAACTTCAACCTTGAATCCTATACTAAT
261 CGACCAGGAGTACATGCATCGAGTTCATCATCATCATCAACTCCAACCTTGAATCCTATACTAAT
* * *
9907784 GGATGCACTTTCTGATTAGCATGATTCATATTTTTCTTGTGCATTTACTAACCCTATGTTTTTCA
326 GGATGCACTTCCCGATTAGCATGATTCATATTTTTCTAGTGCATTTACTAACCCTATGTTTTTCA
*
9907849 CACAAGCACAAATTATACACCATCATACCATGCATAAACACCTTTTCTAAGAATA-TTTTTTGGA
391 CACAAGCACAAATTATACACCATCATACCATGCATAAACACCTTTTCTAAAAATATTTTTTTGGA
*
9907913 ACACCTCCATTTGCAGGAGGATATT
456 ACACCTCCATTTGCAGGAGCATATT
** *
9907938 AAACCTCAATGAACTCACAAGATTAACTTGTGGGGGAGAATCGATGAAGATTAACCTAAATTCCA
1 AAACCTCAATGAACTCACAAGATTAACTTGCAGGAGAGAATCGATGAAGATTAACCTAAATTCCA
* * *
9908003 TGCCAAGTATATCTACTTTTGGGAACATAGGTA-CGATTTCTTACTTATGCGTGAACCAATTGTC
66 TACCAAGTATATCTACTTGTGGGAACATAGGTATC-ATTTCTTACTTATGCATGAACCAATTGTC
*
9908067 AGATCAGATTTGGCGACGTCTGCGGATTACATGACATTGTTTAGACTTCATGGTAAGTCATATCT
130 AGATCAGATTTGGCGACATCTGCGGATTACATGACATTGTTTAGACTTCATGGTAAGTCATATCT
* * * *
9908132 ATTACCGGAGGAGGAAATGAAAGACAAATTCATCGTAGAAGGCCAACACGACCCTACTTGAGGTT
195 ATTACCAGAGGAGGAAAAGAAAGACAAATTCATCGTAAAAGGCCAACACGACCCTACATGAGGTT
* * * ** * *
9908197 GTGTCTAGGAGTACATGCATCGAGTTCATTGTCATCATCAGCTCCAACCTTGAATTCTATACTAA
260 GCGACCAGGAGTACATGCATCGAGTTCATCATCATCATCAACTCCAACCTTGAATCCTATACTAA
* *
9908262 TGGATGCACTTCCCGATTAGTATGATTCATATTTTTCTAGTGCATTTACTAACCCTATTTTTTTC
325 TGGATGCACTTCCCGATTAGCATGATTCATATTTTTCTAGTGCATTTACTAACCCTATGTTTTTC
* * *
9908327 ACACAAGCACAAATTATACACCATCATACCATGCATTAACAGCTTTTCTAAAAATATTTTTTTGT
390 ACACAAGCACAAATTATACACCATCATACCATGCATAAACACCTTTTCTAAAAATATTTTTTTGG
9908392 AACACCTCCATTTGCAGGAGCATATT
455 AACACCTCCATTTGCAGGAGCATATT
9908418 A
1 A
9908419 CACGCCACTG
Statistics
Matches: 436, Mismatches: 43, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
478 1 0.00
479 402 0.92
480 33 0.08
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (480 bp):
AAACCTCAATGAACTCACAAGATTAACTTGCAGGAGAGAATCGATGAAGATTAACCTAAATTCCA
TACCAAGTATATCTACTTGTGGGAACATAGGTATCATTTCTTACTTATGCATGAACCAATTGTCA
GATCAGATTTGGCGACATCTGCGGATTACATGACATTGTTTAGACTTCATGGTAAGTCATATCTA
TTACCAGAGGAGGAAAAGAAAGACAAATTCATCGTAAAAGGCCAACACGACCCTACATGAGGTTG
CGACCAGGAGTACATGCATCGAGTTCATCATCATCATCAACTCCAACCTTGAATCCTATACTAAT
GGATGCACTTCCCGATTAGCATGATTCATATTTTTCTAGTGCATTTACTAACCCTATGTTTTTCA
CACAAGCACAAATTATACACCATCATACCATGCATAAACACCTTTTCTAAAAATATTTTTTTGGA
ACACCTCCATTTGCAGGAGCATATT
Found at i:9909299 original size:249 final size:256
Alignment explanation
Indices: 9908864--9909465 Score: 707
Period size: 249 Copynumber: 2.3 Consensus size: 256
9908854 AACTATTAAT
* *
9908864 TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTATTTTTACATTAATAATTTAC
1 TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTA--TTTACATCAATAATATAC
* * * *
9908929 TTATTTACATTTTATCAAAAAATTGTTTGTTTGTTTTTCTTTTTGTATGTTTATAAAAAAATGAA
64 TTATTTACATTTTATCAAAAAA-------TATGTATTTCATTTTGTATGTTTATAAAAAAACGAA
* * * *
9908994 TAAATTTTTTATTTTATATATATATAATGCTTCCATTAATATTTTTCTTTTATTTTTACAACAAT
122 TAAAATTTTTATTTTATATATATATAATGCTTCCATTAATATTTGTATTGTATTTTTACAACAAT
* * * * * * *
9909059 ATTCTACTTGTTTATATTTTATCAAAAAATTTGTTT-ATTTTTTTGTATGTTTATAGAAAAACGA
187 AATCTACTTATTTACATTTTATCAAAAAAATTATTTGATTTTTTTATATGTTTATA-AAAAAAGA
*
9909123 GTAAAA
251 ATAAAA
* *
9909129 TTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTAGATCAATAATATA-TT
1 TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTATTTACATCAATAATATACTT
* * *
9909193 TTTTATATTTTATCAAAAAA-AT-TATTT-ATTTTGTATGTTTAT-AAAAAACGAGTAAAATTTT
66 ATTTACATTTTATCAAAAAATATGTATTTCATTTTGTATGTTTATAAAAAAACGAATAAAATTTT
* **
9909254 TA-TTT-TATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATCTACTT
131 TATTTTATATATATATAATGCTTCCATTAATATTTGTATTGTATTTTTACAACAATAATCTACTT
* ***
9909317 ATTTACATTTTATCAAAAAAATTATTTGTTTTTTTTATATGTTTATAAAAAAAGAATATTT
196 ATTTACATTTTATCAAAAAAATTATTTGATTTTTTTATATGTTTATAAAAAAAGAATAAAA
* ** * * **
9909378 TTTTTATTTTATATAGGTAATGTTTTAATTAATATTTGTATTATATTTTTACAACAATAACCTAC
1 TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTA--TTTACATCAATAATATAC
9909443 TTATTTACATTTTATCAAAAAAT
64 TTATTTACATTTTATCAAAAAAT
9909466 TGTTTGTTTG
Statistics
Matches: 291, Mismatches: 41, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
249 123 0.42
250 20 0.07
251 31 0.11
252 34 0.12
253 4 0.01
254 1 0.00
262 20 0.07
263 14 0.05
265 44 0.15
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.53
Consensus pattern (256 bp):
TTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTATTTACATCAATAATATACTT
ATTTACATTTTATCAAAAAATATGTATTTCATTTTGTATGTTTATAAAAAAACGAATAAAATTTT
TATTTTATATATATATAATGCTTCCATTAATATTTGTATTGTATTTTTACAACAATAATCTACTT
ATTTACATTTTATCAAAAAAATTATTTGATTTTTTTATATGTTTATAAAAAAAGAATAAAA
Found at i:9909418 original size:128 final size:128
Alignment explanation
Indices: 9908861--9909474 Score: 733
Period size: 128 Copynumber: 4.8 Consensus size: 128
9908851 GTTAACTATT
* * *
9908861 AATTTTTTATTTTATATATGTAATGTTTCCATTAATATTTGTATTGTATTTTTACATTAATAATT
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATCAATAATC
*
9908926 TACTTATTTACATTTTATCAAAAAATTGTTTGTTTGTTTTTCTTTTTGTATGTTTATAAAAAAAT
66 TACTTATTTACATTTTATCAAAAAA---ATTGTTTG--TTT-TTTTTGTATGTTTATAAAAAAA-
9908991 GAATA
124 GAATA
* * * * * *
9908996 AATTTTTTATTTTATATATATATAATGCTTCCATTAATATTTTTCTTTTATTTTTACAACAATAT
1 AATTTTTTA-TTT-TATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATCAATAA
* * * * * *
9909061 TCTACTTGTTTATATTTTATCAAAAAATTTGTTT-ATTTTTTTGTATGTTTATAGAAAAACGAGT
64 TCTACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTTGTATGTTTATA-AAAAAAGAAT
9909125 A
128 A
* * *
9909126 AAATTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTA--TTTAGATCAATAATA
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATCAATAATC
* * * * * *
9909189 TA-TTTTTTATATTTTATCAAAAAAA----TTATTTATTTTGTATGTTTATAAAAAACGAGTA
66 TACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTTGTATGTTTATAAAAAAAGAATA
* *
9909247 AAATTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATTAATAATC
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATCAATAATC
* *
9909312 TACTTATTTACATTTTATCAAAAAAATTATTTGTTTTTTTTATATGTTTATAAAAAAAGAATA
66 TACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTTGTATGTTTATAAAAAAAGAATA
** * * ** * * *
9909375 TTTTTTTTATTTTATATAGGTAATGTTTTAATTAATATTTGTATTATATTTTTACAACAATAACC
1 AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATCAATAATC
9909440 TACTTATTTACATTTTATC-AAAAAATTGTTTGTTT
66 TACTTATTTACATTTTATCAAAAAAATTGTTTGTTT
9909475 GTTTGTTTGT
Statistics
Matches: 419, Mismatches: 49, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
121 61 0.15
122 17 0.04
123 14 0.03
124 21 0.05
125 21 0.05
126 13 0.03
127 15 0.04
128 133 0.32
129 3 0.01
130 28 0.07
131 7 0.02
134 7 0.02
135 9 0.02
136 3 0.01
137 67 0.16
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.53
Consensus pattern (128 bp):
AATTTTTTATTTTATATATGTAATGCTTCCATTAATATTTGTATTGTATTTTTACATCAATAATC
TACTTATTTACATTTTATCAAAAAAATTGTTTGTTTTTTTTGTATGTTTATAAAAAAAGAATA
Found at i:9915389 original size:22 final size:22
Alignment explanation
Indices: 9915364--9915407 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
9915354 CCCCATTGCC
*
9915364 CTTC-TCCACTTTTCTCCTCCCT
1 CTTCTTCC-CTTTCCTCCTCCCT
*
9915386 CTTCTTTCCTTTCCTCCTCCCT
1 CTTCTTCCCTTTCCTCCTCCCT
9915408 TACTTTCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.02, C:0.50, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCTTCCCTTTCCTCCTCCCT
Found at i:9915413 original size:21 final size:21
Alignment explanation
Indices: 9915372--9915422 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
9915362 CCCTTCTCCA
* *
9915372 CTTTTCTCCTCCCTCTTCTTT
1 CTTTCCTCCTCCCTCTACTTT
9915393 CCTTTCCTCCTCCCT-TACTTT
1 -CTTTCCTCCTCCCTCTACTTT
9915414 CTCTTCCTC
1 CT-TTCCTC
9915423 AGTTCACACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 2 0.08
21 11 0.42
22 13 0.50
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (21 bp):
CTTTCCTCCTCCCTCTACTTT
Found at i:9930383 original size:53 final size:53
Alignment explanation
Indices: 9930321--9930426 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
9930311 AACGATATTG
*
9930321 GACGAGGTCGTACCCTGTTGAAGAAAATAAGAGTATTTTTATGAATACAAACA
1 GACGAGGTCGTACCCTATTGAAGAAAATAAGAGTATTTTTATGAATACAAACA
9930374 GACGAGGTCGTACCCTATTGAAGAAAATAAGAGTATTTTTATGAATACAAACA
1 GACGAGGTCGTACCCTATTGAAGAAAATAAGAGTATTTTTATGAATACAAACA
9930427 ATGTCTTAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (53 bp):
GACGAGGTCGTACCCTATTGAAGAAAATAAGAGTATTTTTATGAATACAAACA
Found at i:9932486 original size:21 final size:21
Alignment explanation
Indices: 9932460--9932502 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
9932450 AAGAAGCTAA
9932460 CAAATCTCCATAGGACTTAGT
1 CAAATCTCCATAGGACTTAGT
*
9932481 CAAATCTCCCTAGGACTTAGT
1 CAAATCTCCATAGGACTTAGT
9932502 C
1 C
9932503 TTATTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (21 bp):
CAAATCTCCATAGGACTTAGT
Found at i:9934773 original size:43 final size:43
Alignment explanation
Indices: 9934709--9934794 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
9934699 GAAAAGAGAA
9934709 AGCTCACTTATGGTTCAGAACTTTGAATTGGTGAATTAGGTAT
1 AGCTCACTTATGGTTCAGAACTTTGAATTGGTGAATTAGGTAT
*
9934752 AGCTCACTTATGGTTCGGAACTTTGAATTGGTGAATTAGGTAT
1 AGCTCACTTATGGTTCAGAACTTTGAATTGGTGAATTAGGTAT
9934795 GTCTTTTGCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (43 bp):
AGCTCACTTATGGTTCAGAACTTTGAATTGGTGAATTAGGTAT
Found at i:9947651 original size:24 final size:24
Alignment explanation
Indices: 9947619--9947669 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
9947609 AAGTCTGTCA
**
9947619 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
9947643 GGATAGGATTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
9947667 GGA
1 GGA
9947670 GGAAATCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:9949125 original size:27 final size:27
Alignment explanation
Indices: 9949087--9949198 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
9949077 AGGAAGCGTC
9949087 CTGGTGGCTCTGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
9949114 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
9949141 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
9949169 CTGGTGACTCCGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
9949195 CTGG
1 CTGG
9949199 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 50 0.67
28 17 0.23
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:9949193 original size:54 final size:54
Alignment explanation
Indices: 9949087--9949198 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
9949077 AGGAAGCGTC
* * *
9949087 CTGGTGGCTCTGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGATCTGGTGACTCCGCCACATATATCTGTT
* *
9949141 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCCGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTG-ATCTGGTGACTCCGCCACATATATCTGTT
9949195 CTGG
1 CTGG
9949199 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACAATTATCTGATCTGGTGACTCCGCCACATATATCTGTT
Found at i:9957649 original size:30 final size:29
Alignment explanation
Indices: 9957613--9957676 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
9957603 ATGAATCGGA
9957613 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
9957643 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
9957672 AGCTT
1 AGCTT
9957677 CGACTACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:9960835 original size:47 final size:48
Alignment explanation
Indices: 9960631--9960924 Score: 184
Period size: 47 Copynumber: 6.2 Consensus size: 48
9960621 TCGCCACTAC
* * * *
9960631 CATGTCCCAGACATGGTCTTACGCTGACTATC-TCCATCGAGACCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAACAT-CATCGAGGCCGATG
* ** * * **
9960679 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTATACG-TGCTAATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTAACAT-CAT-CGAGGCCGATG
* * * *
9960729 AATGTCCCAGACAT-GTCTTACACTAGC--ACGA--AACTTA-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAAC-ATCATC-GAGGCCGATG
9960773 CATGTCCCAGACAT-GTCTTACACTGGCTAACATCATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAACATCATCGAGGCCGATG
* * *
9960820 CATGTCCCAGACAT-GTCTTACACTGGC--AC-TCACCTCTACGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAACATCA--TCGAGGCCGATG
* * * * * * *
9960866 CTATGTCCCAGACGTGGTCTTACACAGACTATCATGAT-GCGGCTGATG
1 C-ATGTCCCAGACATGGTCTTACACTGGCTAACATCATCGAGGCCGATG
9960914 CATGTCCCAGA
1 CATGTCCCAGA
9960925 AACATCTTAC
Statistics
Matches: 195, Mismatches: 33, Indels: 36
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 34 0.17
45 3 0.02
46 14 0.07
47 59 0.30
48 30 0.15
49 42 0.22
50 8 0.04
51 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTAACATCATCGAGGCCGATG
Found at i:9960921 original size:94 final size:92
Alignment explanation
Indices: 9960676--9960981 Score: 321
Period size: 94 Copynumber: 3.3 Consensus size: 92
9960666 ATCGAGACCG
* * * *
9960676 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTATACGTGCTAATGAATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACAC-AGCTATCATG-ATGCG-GCTGATGCATGTCCCAGAC
** *
9960741 ATGTCTTACACTAGCACGAAACT-TAGCCG
63 ATGTCTTACACTAGCACTCAACTCTAGCCA
* * * * *
9960770 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTAACATCATCGAGGCCGATGCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACAC-AGCTATCATGAT-GCGGCTGATGCATGTCCCAGACA
* *
9960833 TGTCTTACACTGGCACTCACCTCTACGCCA
64 TGTCTTACACTAGCACTCAACTCTA-GCCA
* * * *
9960863 ATGCTATGTCCCAGACGTGGTCTTACACAGACTATCATGATGCGGCTGATGCATGTCCCAGAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACAG-CTATCATGATGCGGCTGATGCATGTCCCAGACAT
* * * *
9960928 ATCTTACACTAGCCCTCAGCTCAATGCCA
65 GTCTTACACTAGCACTCAACTCTA-GCCA
9960957 ATGCCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
9960982 TACTGGCTCT
Statistics
Matches: 175, Mismatches: 31, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
91 37 0.21
92 19 0.11
93 20 0.11
94 82 0.47
95 17 0.10
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGCTATCATGATGCGGCTGATGCATGTCCCAGACATG
TCTTACACTAGCACTCAACTCTAGCCA
Found at i:9960924 original size:141 final size:141
Alignment explanation
Indices: 9960631--9960890 Score: 332
Period size: 139 Copynumber: 1.9 Consensus size: 141
9960621 TCGCCACTAC
* *
9960631 CATGTCCCAGACATGGTCTTACGCTGACTATCTCCATCGAGACCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTGACTAACTCCATCGAGACCGATGCCATGTCCCAGACATGG
* ** *
9960696 TCTTACACTAGCTCTCATGTATACGTGCTAATGAATGTCCCAGACATGTCTTACACTAGCACGAA
66 TCTTACACTAGCACTCACCTATACG-GCCAATGAATGTCCCAGACATGTCTTACACTAGCACGAA
*
9960761 ACTTAGCCGATG
130 ACTGAGCCGATG
* *
9960773 CATGTCCCAGACAT-GTCTTACACTGGCTAACAT-CATCGAGGCCGATG-CATGTCCCAGACAT-
1 CATGTCCCAGACATGGTCTTACACTGACTAAC-TCCATCGAGACCGATGCCATGTCCCAGACATG
* * * *
9960834 GTCTTACACTGGCACTCACCTCTAC-GCCAATGCTATGTCCCAGACGTGGTCTTACAC
65 GTCTTACACTAGCACTCACCTATACGGCCAATG-AATGTCCCAGACAT-GTCTTACAC
9960891 AGACTATCAT
Statistics
Matches: 103, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
137 6 0.06
138 12 0.12
139 29 0.28
140 14 0.14
141 27 0.26
142 15 0.15
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (141 bp):
CATGTCCCAGACATGGTCTTACACTGACTAACTCCATCGAGACCGATGCCATGTCCCAGACATGG
TCTTACACTAGCACTCACCTATACGGCCAATGAATGTCCCAGACATGTCTTACACTAGCACGAAA
CTGAGCCGATG
Found at i:9964247 original size:15 final size:14
Alignment explanation
Indices: 9964227--9964280 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
9964217 ATTATGAACT
*
9964227 ACCCTAAACTATAAA
1 ACCCTAAACCAT-AA
*
9964242 ACCCTAAACCCTAA
1 ACCCTAAACCATAA
*
9964256 ACCCTAAAACCTTAA
1 ACCCT-AAACCATAA
*
9964271 ACTCTAAACC
1 ACCCTAAACC
9964281 CTAGGGAAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.35
15 22 0.65
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (14 bp):
ACCCTAAACCATAA
Found at i:9964250 original size:7 final size:7
Alignment explanation
Indices: 9964240--9964283 Score: 61
Period size: 7 Copynumber: 6.1 Consensus size: 7
9964230 CTAAACTATA
9964240 AAACCCT
1 AAACCCT
9964247 AAACCCT
1 AAACCCT
9964254 AAACCCT
1 AAACCCT
*
9964261 AAAACCTT
1 -AAACCCT
*
9964269 AAACTCT
1 AAACCCT
9964276 AAACCCT
1 AAACCCT
9964283 A
1 A
9964284 GGGAAGATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:9964281 original size:22 final size:22
Alignment explanation
Indices: 9964227--9964283 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
9964217 ATTATGAACT
**
9964227 ACCCTAAACTATAAAACCCTAA
1 ACCCTAAACCCTAAAACCCTAA
*
9964249 ACCCTAAACCCTAAAACCTTAA
1 ACCCTAAACCCTAAAACCCTAA
*
9964271 ACTCTAAACCCTA
1 ACCCTAAACCCTA
9964284 GGGAAGATGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (22 bp):
ACCCTAAACCCTAAAACCCTAA
Found at i:9965574 original size:28 final size:28
Alignment explanation
Indices: 9965534--9965589 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
9965524 TGGACAAAAA
9965534 TAGGCTATTTACTAAGCCAATTTGTCAC
1 TAGGCTATTTACTAAGCCAATTTGTCAC
9965562 TAGGCTATTTACTAAGCCAATTTGTCAC
1 TAGGCTATTTACTAAGCCAATTTGTCAC
9965590 CCAACTTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (28 bp):
TAGGCTATTTACTAAGCCAATTTGTCAC
Found at i:9972823 original size:20 final size:20
Alignment explanation
Indices: 9972798--9972849 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
9972788 TCTATTATAT
9972798 AATATATAATAAAATATCTA
1 AATATATAATAAAATATCTA
* *
9972818 AATATATAACAACATATCTA
1 AATATATAATAAAATATCTA
**
9972838 TTTATATAATAA
1 AATATATAATAA
9972850 TATTTTTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.37
Consensus pattern (20 bp):
AATATATAATAAAATATCTA
Found at i:9983936 original size:25 final size:25
Alignment explanation
Indices: 9983908--9983957 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
9983898 TGGTGATTGC
9983908 AAAATCATTAGAAGATGGGTTTTGA
1 AAAATCATTAGAAGATGGGTTTTGA
9983933 AAAATCATTAGAAGATGGGTTTTGA
1 AAAATCATTAGAAGATGGGTTTTGA
9983958 TTATTTGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (25 bp):
AAAATCATTAGAAGATGGGTTTTGA
Found at i:9984628 original size:24 final size:24
Alignment explanation
Indices: 9984600--9984649 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9984590 CATTAGCAGC
9984600 TTTTAGATCTCTATGTATTATTCT
1 TTTTAGATCTCTATGTATTATTCT
9984624 TTTTAGATCTCTATGTATTATTCT
1 TTTTAGATCTCTATGTATTATTCT
9984648 TT
1 TT
9984650 ATCTCAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.12, G:0.08, T:0.60
Consensus pattern (24 bp):
TTTTAGATCTCTATGTATTATTCT
Found at i:9986249 original size:21 final size:20
Alignment explanation
Indices: 9986223--9986263 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
9986213 TTATTAATAA
9986223 AACTAAATCCTAGGAAGATTT
1 AACTAAAT-CTAGGAAGATTT
* *
9986244 AACTAAGTCTAGGGAGATTT
1 AACTAAATCTAGGAAGATTT
9986264 GTTAACTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (20 bp):
AACTAAATCTAGGAAGATTT
Done.