Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 35 of 316
Found at i:9991534 original size:26 final size:26
Alignment explanation
Indices: 9991431--9991536 Score: 176
Period size: 26 Copynumber: 4.1 Consensus size: 26
9991421 ATAAAAATTA
* *
9991431 ATAATTGGTTAGGTAAATGTTCCATA
1 ATAATGGGTTAGGTAAATGTTCCATG
*
9991457 ATAATGGGTTAGGTAAATGGTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
*
9991483 ATAATGGGTTAAGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
9991509 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
9991535 AT
1 AT
9991537 GGGAATTTCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.35
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:9993064 original size:27 final size:27
Alignment explanation
Indices: 9993026--9993164 Score: 171
Period size: 27 Copynumber: 5.1 Consensus size: 27
9993016 GAAGAGTCCC
*
9993026 GGTGGCTATGCCACAATTATCTGATCT
1 GGTGGCTCTGCCACAATTATCTGATCT
9993053 GGTGGCTCTGCCAC-ATATATCTG-TCCT
1 GGTGGCTCTGCCACAAT-TATCTGAT-CT
* *
9993080 GGTGGCTATGCCACAATTATCTAATCT
1 GGTGGCTCTGCCACAATTATCTGATCT
9993107 GGTGGCTCTGCCAC-ATATATCT-ATTCT
1 GGTGGCTCTGCCACAAT-TATCTGA-TCT
9993134 GGTGGCTCTGCCACAA-TATCTGTATCT
1 GGTGGCTCTGCCACAATTATCTG-ATCT
9993161 GGTG
1 GGTG
9993165 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 4, Indels: 18
0.82 0.03 0.15
Matches are distributed among these distances:
26 11 0.11
27 83 0.84
28 5 0.05
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATTATCTGATCT
Found at i:9993108 original size:54 final size:54
Alignment explanation
Indices: 9993021--9993164 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
9993011 TGGAGGAAGA
* *
9993021 GTCCCGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
9993075 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
* * * *
9993129 ATTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCT-AATCTGGTG
9993165 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
Found at i:9993176 original size:81 final size:80
Alignment explanation
Indices: 9993026--9993181 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 80
9993016 GAAGAGTCCC
*
9993026 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGC
1 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGC
9993091 CACAATTATCTAATCT
66 CACAA-TATCTAATCT
* *
9993107 GGTGGCTCTGCCAC-ATATATCT-ATTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT-
1 GGTGGCTATGCCACAAT-TATCTGA-TCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACTA
*
9993168 TCGTCACAATATCT
63 T-GCCACAATATCT
9993182 GGCAGCCTCA
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (80 bp):
GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGC
CACAATATCTAATCT
Found at i:9998470 original size:26 final size:26
Alignment explanation
Indices: 9998439--9998544 Score: 153
Period size: 26 Copynumber: 4.2 Consensus size: 26
9998429 TGATAAAAAT
9998439 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
9998465 TAATAATAGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
9998491 TGATAATGAATTAGGT--ATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9998515 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9998541 TGAT
1 TGAT
9998545 GGGAATTTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
24 21 0.31
26 47 0.69
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:9998527 original size:50 final size:51
Alignment explanation
Indices: 9998439--9998544 Score: 151
Period size: 50 Copynumber: 2.1 Consensus size: 51
9998429 TGATAAAAAT
**
9998439 TGATAATGGGTTAGGTAAATGTTCCATAATAATAGGTTAGGTAAATATTCCA
1 TGATAATGAATTAGGT-AATGTTCCATAATAATAGGTTAGGTAAATATTCCA
* * *
9998491 TGATAATGAATTAGGT-ATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGAATTAGGTAATGTTCCATAATAATAGGTTAGGTAAATATTCCA
9998541 TGAT
1 TGAT
9998545 GGGAATTTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
50 35 0.71
52 14 0.29
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (51 bp):
TGATAATGAATTAGGTAATGTTCCATAATAATAGGTTAGGTAAATATTCCA
Found at i:10000240 original size:27 final size:27
Alignment explanation
Indices: 10000143--10000247 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
10000133 AGGAAGCGTC
*
10000143 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
10000170 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
10000197 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
10000224 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
10000248 GCAGTCTCGC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 9 0.13
27 61 0.86
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:10005585 original size:26 final size:26
Alignment explanation
Indices: 10005506--10005587 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
10005496 TGATAAAAAT
*
10005506 TGATAATTGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
10005532 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10005558 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10005584 TGAT
1 TGAT
10005588 GGGAATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10007275 original size:54 final size:54
Alignment explanation
Indices: 10007193--10007333 Score: 248
Period size: 54 Copynumber: 2.6 Consensus size: 54
10007183 GTCCTGGTGG
10007193 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
*
10007247 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
*
10007301 CTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
10007334 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTC
Found at i:10007344 original size:27 final size:27
Alignment explanation
Indices: 10007193--10007351 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
10007183 GTCCTGGTGG
*
10007193 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
10007220 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
10007247 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
10007274 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
10007301 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
10007328 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
10007352 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 105 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:10007345 original size:81 final size:80
Alignment explanation
Indices: 10007193--10007351 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 80
10007183 GTCCTGGTGG
*
10007193 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
10007258 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
10007274 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
10007337 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
10007352 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
80 17 0.24
81 53 0.76
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:10010761 original size:12 final size:10
Alignment explanation
Indices: 10010734--10010886 Score: 60
Period size: 11 Copynumber: 15.6 Consensus size: 10
10010724 ATATAAAAAT
10010734 AAAAATATTA
1 AAAAATATTA
10010744 AAAAATATGTA
1 AAAAATAT-TA
10010755 GAAAAATA-T-
1 -AAAAATATTA
10010764 -AAAA-ATTA
1 AAAAATATTA
10010772 AAAAATATATA
1 AAAAATAT-TA
* *
10010783 AAAATATCTTT
1 AAAA-ATATTA
* *
10010794 CAAATTCATTA
1 AAAAAT-ATTA
10010805 AAAAATTATT-
1 AAAAA-TATTA
*
10010815 ACAAATA-TA
1 AAAAATATTA
*
10010824 AAGAAT-TATA
1 AAAAATAT-TA
* *
10010834 GAAAATCATTT
1 AAAAAT-ATTA
10010845 AAAAATA-T-
1 AAAAATATTA
10010853 AAAAATCATTA
1 AAAAAT-ATTA
*
10010864 TAAAATA-T-
1 AAAAATATTA
10010872 AAAAATA-TA
1 AAAAATATTA
10010881 AAAAAT
1 AAAAAT
10010887 CATAAAAACT
Statistics
Matches: 107, Mismatches: 17, Indels: 39
0.66 0.10 0.24
Matches are distributed among these distances:
6 1 0.01
7 5 0.05
8 14 0.13
9 19 0.18
10 25 0.23
11 31 0.29
12 12 0.11
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (10 bp):
AAAAATATTA
Found at i:10010857 original size:19 final size:18
Alignment explanation
Indices: 10010830--10010914 Score: 84
Period size: 19 Copynumber: 4.5 Consensus size: 18
10010820 TATAAAGAAT
10010830 TATAGAAAATCATTTAAAAA
1 TATA-AAAATCA-TTAAAAA
10010850 TATAAAAATCATTATAAAA
1 TATAAAAATCATTA-AAAA
*
10010869 TATAAAAAT-ATAAAAAA
1 TATAAAAATCATTAAAAA
*
10010886 TCATAAAAA-CTTATAAAAA
1 T-ATAAAAATCAT-TAAAAA
10010905 TAGTAAAAAT
1 TA-TAAAAAT
10010915 TCATAAAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
17 5 0.09
18 15 0.27
19 32 0.57
20 4 0.07
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (18 bp):
TATAAAAATCATTAAAAA
Found at i:10010885 original size:28 final size:28
Alignment explanation
Indices: 10010844--10010922 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
10010834 GAAAATCATT
10010844 TAAAAATAT-AAAAATCATTATAAAA-TA
1 TAAAAATATAAAAAATCATTA-AAAACTA
10010871 TAAAAATATAAAAAATCA-TAAAAACTTA
1 TAAAAATATAAAAAATCATTAAAAAC-TA
*
10010899 TAAAAATAGTAAAAATTCA-TAAAA
1 TAAAAATA-TAAAAAATCATTAAAA
10010923 TAAATTATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
26 4 0.09
27 11 0.23
28 18 0.38
29 14 0.30
ACGTcount: A:0.67, C:0.05, G:0.01, T:0.27
Consensus pattern (28 bp):
TAAAAATATAAAAAATCATTAAAAACTA
Found at i:10010891 original size:10 final size:9
Alignment explanation
Indices: 10010719--10010913 Score: 73
Period size: 8 Copynumber: 20.6 Consensus size: 9
10010709 ACATGTGGAA
10010719 AAAAAATAT
1 AAAAAATAT
10010728 -AAAAATA-
1 AAAAAATAT
*
10010735 AAAATAT-T
1 AAAAAATAT
10010743 AAAAAATATGT
1 AAAAAATA--T
10010754 AGAAAAATAT
1 A-AAAAATAT
10010764 -AAAAAT-T
1 AAAAAATAT
10010771 AAAAAATAT
1 AAAAAATAT
10010780 ATAAAAATATCTT
1 A-AAAAATA---T
** *
10010793 TCAAATTCATT
1 AAAAAAT-A-T
10010804 AAAAAATTAT
1 AAAAAA-TAT
* *
10010814 TACAAATAT
1 AAAAAATAT
*
10010823 AAAGAATTAT
1 AAA-AAATAT
*
10010833 AGAAAATCATT
1 AAAAAAT-A-T
*
10010844 TAAAAATAT
1 AAAAAATAT
10010853 -AAAAATCATT
1 AAAAAAT-A-T
*
10010863 ATAAAATAT
1 AAAAAATAT
10010872 -AAAAATAT
1 AAAAAATAT
10010880 AAAAAATCAT
1 AAAAAAT-AT
*
10010890 AAAAACT-T
1 AAAAAATAT
10010898 ATAAAAATAGT
1 A-AAAAATA-T
10010909 AAAAA
1 AAAAA
10010914 TTCATAAAAT
Statistics
Matches: 140, Mismatches: 21, Indels: 49
0.67 0.10 0.23
Matches are distributed among these distances:
7 1 0.01
8 45 0.32
9 23 0.16
10 36 0.26
11 21 0.15
12 12 0.09
13 2 0.01
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (9 bp):
AAAAAATAT
Found at i:10010922 original size:10 final size:8
Alignment explanation
Indices: 10010844--10010914 Score: 70
Period size: 9 Copynumber: 7.9 Consensus size: 8
10010834 GAAAATCATT
10010844 TAAAAATA
1 TAAAAATA
10010852 TAAAAATCA
1 TAAAAAT-A
10010861 TTATAAAATA
1 -TA-AAAATA
10010871 TAAAAATA
1 TAAAAATA
10010879 TAAAAAATCA
1 T-AAAAAT-A
10010889 TAAAAACTTA
1 TAAAAA--TA
10010899 TAAAAATA
1 TAAAAATA
10010907 GTAAAAAT
1 -TAAAAAT
10010915 TCATAAAATA
Statistics
Matches: 55, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
8 16 0.29
9 21 0.38
10 12 0.22
11 6 0.11
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (8 bp):
TAAAAATA
Found at i:10010922 original size:18 final size:16
Alignment explanation
Indices: 10010846--10010968 Score: 76
Period size: 19 Copynumber: 7.2 Consensus size: 16
10010836 AAATCATTTA
10010846 AAAATATAAAAATCATTAT
1 AAAATAT-AAAA--ATTAT
*
10010865 AAAATATAAAAATATAA
1 AAAATATAAAAAT-TAT
10010882 AAAATCATAAAAACTTAT
1 AAAAT-ATAAAAA-TTAT
10010900 AAAAATAGTAAAAATTCAT
1 -AAAATA-TAAAAATT-AT
10010919 -AAA-AT--AAATTAT
1 AAAATATAAAAATTAT
*
10010931 AAAATTCGTAAATAATTAT
1 AAAA-T-ATAAA-AATTAT
*
10010950 AAAATTTAAAAATT-T
1 AAAATATAAAAATTAT
10010965 AAAA
1 AAAA
10010969 ATTTTATTAA
Statistics
Matches: 87, Mismatches: 4, Indels: 30
0.72 0.03 0.25
Matches are distributed among these distances:
12 2 0.02
13 8 0.09
15 6 0.07
16 8 0.09
17 14 0.16
18 18 0.21
19 31 0.36
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (16 bp):
AAAATATAAAAATTAT
Found at i:10010974 original size:9 final size:8
Alignment explanation
Indices: 10010841--10010972 Score: 50
Period size: 8 Copynumber: 14.5 Consensus size: 8
10010831 ATAGAAAATC
10010841 ATTTAAAA
1 ATTTAAAA
*
10010849 ATATAAAA
1 ATTTAAAA
10010857 ATCATTATAAA
1 AT--TTA-AAA
*
10010868 ATATAAAA
1 ATTTAAAA
*
10010876 ATATAAAAA
1 AT-TTAAAA
*
10010885 ATCATAAAA
1 AT-TTAAAA
10010894 ACTTATAAAA
1 A-TT-TAAAA
*
10010904 ATAGTAAAA
1 AT-TTAAAA
10010913 ATTCATAAAATA
1 ATT--T-AAA-A
*
10010925 AATTATAAA
1 ATTTA-AAA
10010934 ATTCGTAAATA
1 ATT--TAAA-A
10010945 A-TTATAAA
1 ATTTA-AAA
10010953 ATTTAAAA
1 ATTTAAAA
10010961 ATTTAAAA
1 ATTTAAAA
10010969 ATTT
1 ATTT
10010973 TATTAAAAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 34
0.67 0.09 0.24
Matches are distributed among these distances:
8 33 0.35
9 30 0.32
10 16 0.17
11 12 0.13
12 3 0.03
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (8 bp):
ATTTAAAA
Found at i:10012881 original size:9 final size:10
Alignment explanation
Indices: 10012861--10012932 Score: 89
Period size: 10 Copynumber: 7.5 Consensus size: 10
10012851 AAATTACAAA
10012861 TTTT-ATATT
1 TTTTAATATT
10012870 TTTTAATATT
1 TTTTAATATT
10012880 TTTTAATATT
1 TTTTAATATT
10012890 TTTT-ATATT
1 TTTTAATATT
*
10012899 TTTTCAATAGT
1 TTTT-AATATT
*
10012910 TTTT-ACA-T
1 TTTTAATATT
10012918 TTTTAATATT
1 TTTTAATATT
10012928 TTTTA
1 TTTTA
10012933 TTGATTTATA
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
8 5 0.09
9 17 0.31
10 25 0.45
11 8 0.15
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.69
Consensus pattern (10 bp):
TTTTAATATT
Found at i:10012890 original size:20 final size:19
Alignment explanation
Indices: 10012861--10012950 Score: 98
Period size: 20 Copynumber: 4.8 Consensus size: 19
10012851 AAATTACAAA
10012861 TTTT-ATATTTTTTAATATT
1 TTTTAATATTTTTT-ATATT
10012880 TTTTAATATTTTTTATATT
1 TTTTAATATTTTTTATATT
* *
10012899 TTTTCAATAGTTTTTACA-T
1 TTTT-AATATTTTTTATATT
*
10012918 TTTTAATATTTTTTAT-TG
1 TTTTAATATTTTTTATATT
*
10012936 ATTT-ATATTTTTTAT
1 TTTTAATATTTTTTAT
10012951 CGTTTTTTGT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
17 11 0.18
18 13 0.21
19 18 0.29
20 20 0.32
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTAATATTTTTTATATT
Found at i:10012895 original size:29 final size:28
Alignment explanation
Indices: 10012861--10012932 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 28
10012851 AAATTACAAA
* *
10012861 TTTTATATTTTTTAATATTTTTTAATATT
1 TTTTATATTTTTTAATAGTTTTT-ACATT
10012890 TTTTATATTTTTTCAATAGTTTTTACATT
1 TTTTATATTTTTT-AATAGTTTTTACATT
*
10012919 TTTAATATTTTTTA
1 TTTTATATTTTTTA
10012933 TTGATTTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 1 0.03
29 29 0.74
30 9 0.23
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.69
Consensus pattern (28 bp):
TTTTATATTTTTTAATAGTTTTTACATT
Found at i:10012949 original size:9 final size:9
Alignment explanation
Indices: 10012861--10012950 Score: 92
Period size: 9 Copynumber: 9.7 Consensus size: 9
10012851 AAATTACAAA
10012861 TTTTATATT
1 TTTTATATT
10012870 TTTTAATATT
1 TTTT-ATATT
10012880 TTTTAATATT
1 TTTT-ATATT
10012890 TTTTATATT
1 TTTTATATT
*
10012899 TTTTCAATAGT
1 TTTT--ATATT
*
10012910 TTTTACATT
1 TTTTATATT
*
10012919 TTTAATATT
1 TTTTATATT
*
10012928 TTTTAT-TG
1 TTTTATATT
*
10012936 ATTTATATT
1 TTTTATATT
10012945 TTTTAT
1 TTTTAT
10012951 CGTTTTTTGT
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
8 6 0.09
9 34 0.51
10 19 0.28
11 8 0.12
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (9 bp):
TTTTATATT
Found at i:10013614 original size:3 final size:3
Alignment explanation
Indices: 10013602--10013643 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
10013592 TGAGTAGTAA
* * *
10013602 AAG AAA AAG AAG AAG -AG ACG AAG AAG AAG AAG AAC AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
10013644 GAAAAATTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.67, C:0.05, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10024698 original size:12 final size:13
Alignment explanation
Indices: 10024681--10024709 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
10024671 CTCATACATG
10024681 AATAAATAAA-GC
1 AATAAATAAATGC
10024693 AATAAATAAATGC
1 AATAAATAAATGC
10024706 AATA
1 AATA
10024710 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:10027641 original size:20 final size:20
Alignment explanation
Indices: 10027616--10027653 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10027606 ATTATTAAAA
*
10027616 AAGGTTTATATGTTAAAAGG
1 AAGGTTTATATGTCAAAAGG
10027636 AAGGTTTATATGTCAAAA
1 AAGGTTTATATGTCAAAA
10027654 AGGCCCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.34
Consensus pattern (20 bp):
AAGGTTTATATGTCAAAAGG
Found at i:10027900 original size:19 final size:19
Alignment explanation
Indices: 10027869--10027965 Score: 63
Period size: 19 Copynumber: 4.7 Consensus size: 19
10027859 TAAAAATGAT
*
10027869 TAAAAAT-ACAAAAAAATC
1 TAAAAATAATAAAAAAATC
* *
10027887 TAAAAATAATAAAAAAGTA
1 TAAAAATAATAAAAAAATC
10027906 TAAATATTATAAAATATAAAAAATC
1 TAAA-A--AT--AATA-AAAAAATC
*
10027931 TAATAAATTATAAAAAAAT-
1 TAA-AAATAATAAAAAAATC
10027950 TATAAAATTAATAAAA
1 TA-AAAA-TAATAAAA
10027966 CATATTTAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
18 7 0.11
19 17 0.27
20 16 0.26
21 3 0.05
22 2 0.03
23 2 0.03
24 4 0.06
25 10 0.16
26 1 0.02
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (19 bp):
TAAAAATAATAAAAAAATC
Found at i:10027924 original size:26 final size:27
Alignment explanation
Indices: 10027889--10027964 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 27
10027879 AAAAAATCTA
*
10027889 AAAATAATAAAAAAGTATAA-ATATTAT
1 AAAATAATAAAAAA-TATAATAAATTAT
*
10027916 AAAAT-ATAAAAAATCTAATAAATTAT
1 AAAATAATAAAAAATATAATAAATTAT
* *
10027942 AAAAAAATTATAAAAT-TAATAAA
1 AAAATAA-TAAAAAATATAATAAA
10027965 ACATATTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
25 4 0.10
26 18 0.43
27 13 0.31
28 7 0.17
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (27 bp):
AAAATAATAAAAAATATAATAAATTAT
Found at i:10027946 original size:27 final size:26
Alignment explanation
Indices: 10027887--10027964 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 26
10027877 CAAAAAAATC
*
10027887 TAAAAATAATAAAAAAGT-ATAAA-TA
1 TAAAAAT-ATAAAAAATTAATAAATTA
10027912 TTATAAAATATAAAAAATCTAATAAATTA
1 -TA-AAAATATAAAAAAT-TAATAAATTA
* *
10027941 TAAAAAAATTATAAAATTAATAAA
1 TAAAAATA-TAAAAAATTAATAAA
10027965 ACATATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
26 10 0.23
27 18 0.41
28 14 0.32
29 2 0.05
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (26 bp):
TAAAAATATAAAAAATTAATAAATTA
Found at i:10027975 original size:20 final size:19
Alignment explanation
Indices: 10027911--10028044 Score: 64
Period size: 19 Copynumber: 6.9 Consensus size: 19
10027901 AAGTATAAAT
10027911 ATTATAAAA-TAT-AAAAA
1 ATTATAAAATTATAAAAAA
10027928 ATCTA-ATAAATTATAAAAAA
1 AT-TATA-AAATTATAAAAAA
*
10027948 ATTATAAAATTAATAAAACAT
1 ATTATAAAATT-ATAAAA-AA
* *
10027969 ATT-TAAAATTTTATAAGAA
1 ATTATAAAATTATA-AAAAA
** *
10027988 ATCGTATAATTTTTTAAAAAA
1 AT--TATAAAATTATAAAAAA
* **
10028009 CTTATAAAAATT-TATCAAA
1 ATTAT-AAAATTATAAAAAA
10028028 ATTATTAAAA-TATAAAA
1 ATTA-TAAAATTATAAAA
10028045 TTTAATATAA
Statistics
Matches: 88, Mismatches: 15, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
17 3 0.03
18 6 0.07
19 33 0.38
20 28 0.32
21 10 0.11
22 8 0.09
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (19 bp):
ATTATAAAATTATAAAAAA
Found at i:10035755 original size:50 final size:50
Alignment explanation
Indices: 10035637--10035885 Score: 257
Period size: 50 Copynumber: 4.8 Consensus size: 50
10035627 GATAATAACA
* * * ** * *
10035637 TGCCAAAGCCATGTCCCGGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
10035688 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
10035738 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
10035788 TGCCCATGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
10035843 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
10035886 TTACCCAAAT
Statistics
Matches: 167, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.54
51 32 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 38 0.23
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:10035814 original size:100 final size:104
Alignment explanation
Indices: 10035636--10035885 Score: 330
Period size: 100 Copynumber: 2.4 Consensus size: 104
10035626 TGATAATAAC
* **
10035636 ATGCCAAAGCCATGTCCCGGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* * *
10035701 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAAACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* * *
10035738 -TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
10035801 TCCCAAACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAAACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
10035843 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
10035886 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.38
101 34 0.26
103 3 0.02
104 1 0.01
105 2 0.02
106 39 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAAACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:10036001 original size:13 final size:13
Alignment explanation
Indices: 10035980--10036011 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
10035970 GCTTGGATCA
*
10035980 TCATCAAATAAAT
1 TCATAAAATAAAT
10035993 TCATAAAATAAAT
1 TCATAAAATAAAT
10036006 TCATAA
1 TCATAA
10036012 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:10036259 original size:30 final size:30
Alignment explanation
Indices: 10036223--10036280 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
10036213 CCTCGACTCT
*
10036223 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
10036253 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
10036281 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:10038000 original size:5 final size:5
Alignment explanation
Indices: 10037992--10038018 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
10037982 ATACTTTAAT
10037992 TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TATAA TA
10038019 ATATTTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:10041486 original size:41 final size:41
Alignment explanation
Indices: 10041372--10041495 Score: 109
Period size: 41 Copynumber: 3.1 Consensus size: 41
10041362 CTTGTACTTG
*
10041372 CACATATTTTACCATGGCCTTGTCATGATCACACACTTTAT
1 CACATATTTTACCATGGCCTTGTCATGATCACACACTTCAT
* * * **
10041413 CAC--A--TTGCCATAG-CTTAG-CTATGGTCTTACACTTGCA-
1 CACATATTTTACCATGGCCTT-GTC-ATGATCACACACTT-CAT
*
10041450 CACATATTTTACCATGGCCTTGTCATGATCACACACTTTAT
1 CACATATTTTACCATGGCCTTGTCATGATCACACACTTCAT
10041491 CACAT
1 CACAT
10041496 TGCCATAGCT
Statistics
Matches: 61, Mismatches: 12, Indels: 20
0.66 0.13 0.22
Matches are distributed among these distances:
36 4 0.07
37 22 0.36
38 1 0.02
39 2 0.03
40 1 0.02
41 27 0.44
42 4 0.07
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (41 bp):
CACATATTTTACCATGGCCTTGTCATGATCACACACTTCAT
Found at i:10041490 original size:78 final size:78
Alignment explanation
Indices: 10041302--10041534 Score: 335
Period size: 78 Copynumber: 3.0 Consensus size: 78
10041292 TTGCATACAC
* * * * * * * * * * **
10041302 TTTTATCATGGCTTTGCCATGACCACATATTTTATCATACTGCCACAGCTTAACTATGGTCTTGT
1 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
10041367 ACTTG--CACATA
66 ACTTGCACACATA
10041378 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
1 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
10041443 ACTTGCACACATA
66 ACTTGCACACATA
*
10041456 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCCATGGTCTTAC
1 TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
10041521 ACTTGCACACATA
66 ACTTGCACACATA
10041534 T
1 T
10041535 GTATCTGCCA
Statistics
Matches: 142, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
76 58 0.41
78 84 0.59
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (78 bp):
TTTTACCATGGCCTTGTCATGATCACACACTTTATCACATTGCCATAGCTTAGCTATGGTCTTAC
ACTTGCACACATA
Found at i:10041532 original size:37 final size:37
Alignment explanation
Indices: 10041413--10041532 Score: 100
Period size: 37 Copynumber: 3.1 Consensus size: 37
10041403 CACACTTTAT
*
10041413 CACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
1 CACATTGCCATAGCTTAGCCATGGTCTTACACTTGCA
* * * * ** *
10041450 CACATATTTTACCATGGCCTT-GTCATGATCACACACTT-TA
1 CAC--A--TTGCCATAG-CTTAGCCATGGTCTTACACTTGCA
10041490 TCACATTGCCATAGCTTAGCCATGGTCTTACACTTGCA
1 -CACATTGCCATAGCTTAGCCATGGTCTTACACTTGCA
10041528 CACAT
1 CACAT
10041533 ATGTATCTGC
Statistics
Matches: 60, Mismatches: 15, Indels: 16
0.66 0.16 0.18
Matches are distributed among these distances:
36 3 0.05
37 28 0.47
38 1 0.02
39 2 0.03
40 1 0.02
41 22 0.37
42 3 0.05
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (37 bp):
CACATTGCCATAGCTTAGCCATGGTCTTACACTTGCA
Found at i:10045896 original size:15 final size:16
Alignment explanation
Indices: 10045869--10045898 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10045859 GTATTTAATT
10045869 ATAATATAAGTAAATA
1 ATAATATAAGTAAATA
10045885 ATAATA-AAGTAAAT
1 ATAATATAAGTAAAT
10045899 TATATTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (16 bp):
ATAATATAAGTAAATA
Found at i:10046005 original size:20 final size:17
Alignment explanation
Indices: 10045980--10046021 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 17
10045970 CACGAATAGT
10045980 AGGGAAAGAAAGAAGGAAAA
1 AGGGAAAGAAA-AA-G-AAA
10046000 AGGGAAAGAAAAAGAAA
1 AGGGAAAGAAAAAGAAA
10046017 AGGGA
1 AGGGA
10046022 GAATTAGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.36
18 1 0.05
19 2 0.09
20 11 0.50
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (17 bp):
AGGGAAAGAAAAAGAAA
Found at i:10051485 original size:37 final size:37
Alignment explanation
Indices: 10051368--10051485 Score: 87
Period size: 37 Copynumber: 3.1 Consensus size: 37
10051358 CATACTTTAT
** * *
10051368 CACATTGCCATAATTTAACTATGGTCTTGCACTTGCA
1 CACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
* * * * ** *
10051405 CATATTTTACCATGGCCTT-GCTATGATCACACACTT-TA
1 CACA--TTGCCATAG-CTTAGCTATGGTCTTACACTTGCA
10051443 TCACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
1 -CACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
10051481 CACAT
1 CACAT
10051486 ATGTAACTGC
Statistics
Matches: 57, Mismatches: 18, Indels: 12
0.66 0.21 0.14
Matches are distributed among these distances:
36 3 0.05
37 29 0.51
38 2 0.04
39 21 0.37
40 2 0.04
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (37 bp):
CACATTGCCATAGCTTAGCTATGGTCTTACACTTGCA
Found at i:10051828 original size:9 final size:8
Alignment explanation
Indices: 10051804--10051855 Score: 61
Period size: 8 Copynumber: 6.4 Consensus size: 8
10051794 AATACAACCC
10051804 AAAAT-AA
1 AAAATAAA
10051811 AAAATAAA
1 AAAATAAA
10051819 AAAATAAA
1 AAAATAAA
10051827 AAAATGAAGA
1 AAAAT-AA-A
*
10051837 AAAAGAAA
1 AAAATAAA
*
10051845 AAAAGAAA
1 AAAATAAA
10051853 AAA
1 AAA
10051856 GCCTAACCTC
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
7 5 0.12
8 27 0.66
9 4 0.10
10 5 0.12
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (8 bp):
AAAATAAA
Found at i:10053043 original size:19 final size:19
Alignment explanation
Indices: 10053019--10053056 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
10053009 TTGAGATTGC
10053019 CAACCTATTT-CCTTGAAAT
1 CAACCTATTTGCC-TGAAAT
10053038 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
10053057 TATTCATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:10058764 original size:74 final size:74
Alignment explanation
Indices: 10058575--10058835 Score: 497
Period size: 74 Copynumber: 3.5 Consensus size: 74
10058565 ACAACTTGAC
*
10058575 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCGCCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
10058640 CAC-TAACA
66 CACTTAACA
10058648 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
10058713 CACTTAACA
66 CACTTAACA
10058722 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
10058787 CACTTAACA
66 CACTTAACA
*
10058796 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
10058836 AATAATAATA
Statistics
Matches: 185, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
73 67 0.36
74 118 0.64
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (74 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTTAACA
Found at i:10058844 original size:3 final size:3
Alignment explanation
Indices: 10058836--10058867 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10058826 ATTACATCCA
10058836 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10058868 AACATGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10063167 original size:74 final size:74
Alignment explanation
Indices: 10063084--10063271 Score: 358
Period size: 74 Copynumber: 2.5 Consensus size: 74
10063074 ACAACTTGAC
*
10063084 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCGCCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
10063149 CACTTAACA
66 CACTTAACA
10063158 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
10063223 CACTTAACA
66 CACTTAACA
*
10063232 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
10063272 AATAATAATA
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
74 112 1.00
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (74 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTTAACA
Found at i:10063280 original size:3 final size:3
Alignment explanation
Indices: 10063272--10063300 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10063262 ATTACATCCA
10063272 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10063301 AACATGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10067497 original size:27 final size:29
Alignment explanation
Indices: 10067458--10067511 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
10067448 CTACTATTAT
*
10067458 AATATGTTCTAT-AGTATT-ATATAATGA
1 AATATATTCTATAAGTATTAATATAATGA
*
10067485 AATATATTTTATAAGTATTAATATAAT
1 AATATATTCTATAAGTATTAATATAAT
10067512 AACTATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 6 0.26
29 7 0.30
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (29 bp):
AATATATTCTATAAGTATTAATATAATGA
Found at i:10068630 original size:20 final size:20
Alignment explanation
Indices: 10068596--10068637 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
10068586 AATCATTTAA
** *
10068596 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
10068616 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
10068636 AT
1 AT
10068638 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:10070526 original size:22 final size:21
Alignment explanation
Indices: 10070473--10070530 Score: 64
Period size: 24 Copynumber: 2.6 Consensus size: 21
10070463 AAATTACTTC
10070473 TATATATTTTTTTTAAAATTAAA
1 TATA-ATTTTTTTTAAAA-TAAA
10070496 TATTAATTTATTTTTAAAA-AAA
1 TA-TAATTT-TTTTTAAAATAAA
10070518 TATAGATTTTTTT
1 TATA-ATTTTTTT
10070531 ATTTGATGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
21 6 0.19
22 9 0.28
23 6 0.19
24 11 0.34
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TATAATTTTTTTTAAAATAAA
Found at i:10071275 original size:16 final size:15
Alignment explanation
Indices: 10071254--10071289 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
10071244 GTTGCTTTTA
10071254 TATTTTCTCTATTCTT
1 TATTTTCTCTA-TCTT
10071270 TATTTTCTCTATCTT
1 TATTTTCTCTATCTT
10071285 T-TTTT
1 TATTTT
10071290 ATTTTATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 4 0.20
15 5 0.25
16 11 0.55
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (15 bp):
TATTTTCTCTATCTT
Found at i:10074765 original size:7 final size:7
Alignment explanation
Indices: 10074753--10074777 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10074743 CTTTCATATT
10074753 TTCTTTA
1 TTCTTTA
10074760 TTCTTTA
1 TTCTTTA
10074767 TTCTTTA
1 TTCTTTA
10074774 TTCT
1 TTCT
10074778 CTCTATCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (7 bp):
TTCTTTA
Found at i:10079819 original size:24 final size:24
Alignment explanation
Indices: 10079792--10079907 Score: 189
Period size: 24 Copynumber: 4.8 Consensus size: 24
10079782 GTCAGGAGAA
10079792 GATTTAGGAGCTGATAAGGGAAAG
1 GATTTAGGAGCTGATAAGGGAAAG
10079816 GATTTAGGAGCTGATAAGGGAAAG
1 GATTTAGGAGCTGATAAGGGAAAG
* *
10079840 GATTTAGGAGATGATAAGGGAGAG
1 GATTTAGGAGCTGATAAGGGAAAG
10079864 GATTTAGGAGCTGATAAGGGAGAA-
1 GATTTAGGAGCTGATAAGGGA-AAG
10079888 GATTTAGGAGCTGATCAAGG
1 GATTTAGGAGCTGAT-AAGG
10079908 AGCAAGAGTT
Statistics
Matches: 86, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
24 81 0.94
25 5 0.06
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.22
Consensus pattern (24 bp):
GATTTAGGAGCTGATAAGGGAAAG
Found at i:10079909 original size:24 final size:24
Alignment explanation
Indices: 10079785--10079914 Score: 153
Period size: 24 Copynumber: 5.4 Consensus size: 24
10079775 AAAGGCTGTC
10079785 AGGAG-AAGATTTAGGAGCTGATA
1 AGGAGAAAGATTTAGGAGCTGATA
10079808 AGG-GAAAGGATTTAGGAGCTGATA
1 AGGAGAAA-GATTTAGGAGCTGATA
*
10079832 AGG-GAAAGGATTTAGGAGATGATA
1 AGGAGAAA-GATTTAGGAGCTGATA
*
10079856 AGG-GAGAGGATTTAGGAGCTGATA
1 AGGAGA-AAGATTTAGGAGCTGATA
10079880 AGG-GAGAAGATTTAGGAGCTGATCA
1 AGGAGA-AAGATTTAGGAGCTGAT-A
*
10079905 AGGAGCAAGA
1 AGGAGAAAGA
10079915 GTTGGCCGGC
Statistics
Matches: 97, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
22 1 0.01
23 5 0.05
24 81 0.84
25 9 0.09
26 1 0.01
ACGTcount: A:0.38, C:0.05, G:0.38, T:0.19
Consensus pattern (24 bp):
AGGAGAAAGATTTAGGAGCTGATA
Found at i:10081398 original size:26 final size:26
Alignment explanation
Indices: 10081291--10081401 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
10081281 AGGAAGCGTC
* * *
10081291 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGTT
10081318 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
10081345 CTGGTGGCTCTACTACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
10081372 CTGGTGACTCTGCCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
10081398 CTGG
1 CTGG
10081402 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 16 0.22
27 56 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:10085160 original size:18 final size:18
Alignment explanation
Indices: 10085122--10085161 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
10085112 CAGACCACAC
* *
10085122 GCCTGTGCCTATTTGATA
1 GCCTGTGCCTATTTAACA
10085140 GCCTGTGCCTATTTAACA
1 GCCTGTGCCTATTTAACA
10085158 GCCT
1 GCCT
10085162 TGACCACGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.28, G:0.20, T:0.35
Consensus pattern (18 bp):
GCCTGTGCCTATTTAACA
Found at i:10098442 original size:25 final size:25
Alignment explanation
Indices: 10098395--10098560 Score: 85
Period size: 24 Copynumber: 6.8 Consensus size: 25
10098385 CATACAAGCA
* * *
10098395 CATA-AACGGGAAGTTCTTTTGAGC
1 CATATAACGGGAAGCTCATGTGAGC
*
10098419 TATATAACGGGAAGCTCATGTGAGC
1 CATATAACGGGAAGCTCATGTGAGC
* * *
10098444 CATGTAACGAGAAGCTC-TGGAGAGC
1 CATATAACGGGAAGCTCAT-GTGAGC
* * **
10098469 CAT-TAATGGAAAGCTCATACGAG-
1 CATATAACGGGAAGCTCATGTGAGC
* * * * *
10098492 CAAATATCGGGAAGTTCAAGGGAGC
1 CATATAACGGGAAGCTCATGTGAGC
* * *
10098517 CA-ATATCGGGAAGAT-ATGGAGAGC
1 CATATAACGGGAAGCTCAT-GTGAGC
10098541 CAT-TAATCGGGAAGCTCATG
1 CATATAA-CGGGAAGCTCATG
10098561 AAAGAGCCTT
Statistics
Matches: 107, Mismatches: 26, Indels: 17
0.71 0.17 0.11
Matches are distributed among these distances:
23 3 0.03
24 51 0.48
25 51 0.48
26 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (25 bp):
CATATAACGGGAAGCTCATGTGAGC
Found at i:10100114 original size:28 final size:28
Alignment explanation
Indices: 10100082--10100137 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
10100072 CGGTGTTGTC
10100082 TCCGAAACAAGATCTATTGAAAATTCAA
1 TCCGAAACAAGATCTATTGAAAATTCAA
10100110 TCCGAAACAAGATCTATTGAAAATTCAA
1 TCCGAAACAAGATCTATTGAAAATTCAA
10100138 CTTCCCTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.25
Consensus pattern (28 bp):
TCCGAAACAAGATCTATTGAAAATTCAA
Found at i:10101181 original size:42 final size:42
Alignment explanation
Indices: 10101121--10101204 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
10101111 TTTCTTTGAT
* *
10101121 TTCTTCGAAGCTGGCTGATATGACTTTCCTATCATTCTCTTA
1 TTCTTCAAAGCTGACTGATATGACTTTCCTATCATTCTCTTA
* *
10101163 TTCTTCAAAGCTGACTGATATGACTTTTCTGTCATTCTCTTA
1 TTCTTCAAAGCTGACTGATATGACTTTCCTATCATTCTCTTA
10101205 CTTGTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.44
Consensus pattern (42 bp):
TTCTTCAAAGCTGACTGATATGACTTTCCTATCATTCTCTTA
Found at i:10103559 original size:25 final size:25
Alignment explanation
Indices: 10103531--10103590 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
10103521 GAAGCTTTTT
10103531 TGAGCCATAAAACAGGAAGC-TCGTG
1 TGAGCCATAAAACAGGAAGCTTCG-G
** *
10103556 TGAGCCATGTAACGGGAAGCTTCGG
1 TGAGCCATAAAACAGGAAGCTTCGG
*
10103581 AGAGCCATAA
1 TGAGCCATAA
10103591 CGGGAAGCTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
25 25 0.89
26 3 0.11
ACGTcount: A:0.33, C:0.20, G:0.30, T:0.17
Consensus pattern (25 bp):
TGAGCCATAAAACAGGAAGCTTCGG
Found at i:10118367 original size:212 final size:210
Alignment explanation
Indices: 10117809--10118381 Score: 977
Period size: 210 Copynumber: 2.7 Consensus size: 210
10117799 CTTCATCGGG
* *
10117809 GCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCGGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAGCGGGGAGCAGATCGAAGATATAGCTG
* * *
10117874 ATTTGGCATTCACGTGTTTACGATGAAGCAAATGTAAGATGATTTGTCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* ** * *
10117939 AAACAAATTGAAGTCTGGCATTTCCATTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCA
131 GAACAAATCAAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
10118004 GATTTTTACGCTGAA
196 GATTTTTACGCTGAA
*
10118019 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATT-TGACGGGGAGCAGATCGAAGATATAGCT
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAG-CGGGGAGCAGATCGAAGATATAGCT
*
10118083 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCGTCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
*
10118148 AGAACAAATCAAAGTCTGGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTCACCTTC
130 AGAACAAATCAAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTC
*
10118213 AGATTTTTACGTTGAA
195 AGATTTTTACGCTGAA
10118229 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAAAGCGGGGAGCAGATCGAAGATATAGC
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTC--AGCGGGGAGCAGATCGAAGATATAGC
*
10118294 TGATTTGGCTTTCACTTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCA
64 TGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCA
10118359 GAGAACAAATCAAAGTCTGGCAT
129 GAGAACAAATCAAAGTCTGGCAT
10118382 CTCTACATTC
Statistics
Matches: 343, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
209 1 0.00
210 231 0.67
212 110 0.32
213 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (210 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAGCGGGGAGCAGATCGAAGATATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
GAACAAATCAAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
GATTTTTACGCTGAA
Found at i:10120399 original size:24 final size:25
Alignment explanation
Indices: 10120353--10120406 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
10120343 TATAATTTAT
10120353 TTATTAAAAATACTATACATATATTA
1 TTATTAAAAATAC-ATACATATATTA
* *
10120379 TTATTAAAAATAC-TACTTATATTT
1 TTATTAAAAATACATACATATATTA
10120403 TTAT
1 TTAT
10120407 CATATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 13 0.50
26 13 0.50
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATTAAAAATACATACATATATTA
Found at i:10120518 original size:16 final size:15
Alignment explanation
Indices: 10120489--10120534 Score: 67
Period size: 16 Copynumber: 3.0 Consensus size: 15
10120479 ATTATCTTAC
10120489 ATTTTAATTA-TATT
1 ATTTTAATTATTATT
10120503 ATTTTATATTATTATT
1 ATTTTA-ATTATTATT
10120519 ATTTTACATTATTATT
1 ATTTTA-ATTATTATT
10120535 TATATATGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 6 0.21
15 4 0.14
16 19 0.66
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTTAATTATTATT
Found at i:10120519 original size:21 final size:21
Alignment explanation
Indices: 10120475--10120664 Score: 67
Period size: 21 Copynumber: 8.7 Consensus size: 21
10120465 ATCTTTATCT
* *
10120475 TTATATTATCTTACATT-TTAA
1 TTATATTATTTTATATTATT-A
10120496 TTATATTATTTTATATTATTA
1 TTATATTATTTTATATTATTA
*
10120517 TTATTTTACATTATTAT-TTATATA
1 TTATATT--ATT-TTATATTAT-TA
* *
10120541 TGGT-TATTATATTTGTGCTTA-TA
1 T--TATATTAT-TTTAT-ATTATTA
10120564 TTATA-TATTAATATATATATATTA
1 TTATATTATT--T-TATAT-TATTA
*
10120588 -TACATTATTTTTATATACATATTA
1 TTATATTA-TTTTATAT---TATTA
*
10120612 -TATATTATTTTAGATTATTA
1 TTATATTATTTTATATTATTA
* *
10120632 TGT-TATTTTTTTATACTATTA
1 T-TATATTATTTTATATTATTA
10120653 -TATATT-TTTTAT
1 TTATATTATTTTAT
10120665 CCGTATATTA
Statistics
Matches: 133, Mismatches: 13, Indels: 48
0.69 0.07 0.25
Matches are distributed among these distances:
19 7 0.05
20 10 0.08
21 41 0.31
22 12 0.09
23 30 0.23
24 24 0.18
25 8 0.06
26 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.61
Consensus pattern (21 bp):
TTATATTATTTTATATTATTA
Found at i:10120584 original size:14 final size:15
Alignment explanation
Indices: 10120560--10120618 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 15
10120550 TATTTGTGCT
10120560 TATATTATATATTAA
1 TATATTATATATTAA
10120575 TATA-TATATATT-A
1 TATATTATATATTAA
* *
10120588 TACATTAT-TTTTATA
1 TATATTATATATTA-A
10120603 TACATATTATATATTA
1 T--ATATTATATATTA
10120619 TTTTAGATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
13 7 0.21
14 11 0.32
15 6 0.18
17 6 0.18
18 4 0.12
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTATATATTAA
Found at i:10120596 original size:24 final size:24
Alignment explanation
Indices: 10120569--10120620 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
10120559 TTATATTATA
*
10120569 TATTAATATATATATATTATACAT
1 TATTAATATATACATATTATACAT
** *
10120593 TATTTTTATATACATATTATATAT
1 TATTAATATATACATATTATACAT
10120617 TATT
1 TATT
10120621 TTAGATTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTAATATATACATATTATACAT
Found at i:10120621 original size:24 final size:24
Alignment explanation
Indices: 10120575--10120622 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
10120565 TATATATTAA
*
10120575 TATATATATATTATACATTATTTT
1 TATATACATATTATACATTATTTT
*
10120599 TATATACATATTATATATTATTTT
1 TATATACATATTATACATTATTTT
10120623 AGATTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (24 bp):
TATATACATATTATACATTATTTT
Found at i:10121167 original size:33 final size:34
Alignment explanation
Indices: 10121125--10121201 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
10121115 TGTACATTGA
* * *
10121125 TATTGTATTACTT-TTTTTTTGTATGTCATGCAC
1 TATTTTATTACTTCTTCTTTTGTATATCATGCAC
*
10121158 TATTTTATTACTTCTTCTTTTGTATATCATGCAT
1 TATTTTATTACTTCTTCTTTTGTATATCATGCAC
*
10121192 TATTTAATTA
1 TATTTTATTA
10121202 TTGCAATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
33 12 0.32
34 26 0.68
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.58
Consensus pattern (34 bp):
TATTTTATTACTTCTTCTTTTGTATATCATGCAC
Found at i:10122748 original size:19 final size:19
Alignment explanation
Indices: 10122724--10122761 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10122714 ATGAAAATAA
10122724 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
10122743 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
10122762 TCTTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AACAAAATTCAGGGATTTT
Found at i:10126913 original size:54 final size:54
Alignment explanation
Indices: 10126819--10126930 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
10126809 AGCATGGCTG
* * *
10126819 CCAGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCA
* * * *
10126873 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAAATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCA
10126927 CCAG
1 CCAG
10126931 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCA
Found at i:10126930 original size:27 final size:27
Alignment explanation
Indices: 10126819--10126930 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
10126809 AGCATGGCTG
* * *
10126819 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAAATAATTGTGGCAGAGCCA
* * *
10126845 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAAATAATTGTGGCAGAGCCA
*
10126873 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAAATAAT-TGTGGCAGAGCCA
* *
10126900 CCAGATCAAATAATTGTGGCATAGCCA
1 CCAGAACAAATAATTGTGGCAGAGCCA
10126927 CCAG
1 CCAG
10126931 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (27 bp):
CCAGAACAAATAATTGTGGCAGAGCCA
Found at i:10132829 original size:20 final size:20
Alignment explanation
Indices: 10132801--10132842 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
10132791 AAATAAACAC
* *
10132801 ATAATTATTCATCTAATATT
1 ATAACTATTCAACTAATATT
10132821 ATAACTATTCAACTAATATT
1 ATAACTATTCAACTAATATT
10132841 AT
1 AT
10132843 TTAAATAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAACTATTCAACTAATATT
Found at i:10140829 original size:3 final size:3
Alignment explanation
Indices: 10140821--10140867 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
10140811 ATGAATTAAA
*
10140821 TAT TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAT TAAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT T-AT TAT TAT
10140866 TA
1 TA
10140868 ACTAATACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 4 0.11
3 29 0.76
4 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:10141947 original size:23 final size:23
Alignment explanation
Indices: 10141921--10142009 Score: 124
Period size: 23 Copynumber: 3.9 Consensus size: 23
10141911 CTGAGTGCCG
**
10141921 TTCTGGTGCATTTGGGTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
10141944 TTCTGGTGTGTTTGGGTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
*
10141967 TTCTGGTGTGTTTGGTTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
* * *
10141990 TTTTGGTTTGTTTGGTTGGA
1 TTCTGGTGTGTTTGGGTGGA
10142010 ATCCGTGTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.09, C:0.04, G:0.36, T:0.51
Consensus pattern (23 bp):
TTCTGGTGTGTTTGGGTGGATTA
Found at i:10149013 original size:13 final size:13
Alignment explanation
Indices: 10148995--10149021 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10148985 GGGGTTGTTT
10148995 ATTAAACTAATTA
1 ATTAAACTAATTA
10149008 ATTAAACTAATTA
1 ATTAAACTAATTA
10149021 A
1 A
10149022 ATAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:10149018 original size:9 final size:9
Alignment explanation
Indices: 10149006--10149039 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
10148996 TTAAACTAAT
10149006 TAATTAAAC
1 TAATTAAAC
10149015 TAATTAAA-
1 TAATTAAAC
10149023 TAATTAAAC
1 TAATTAAAC
*
10149032 TAAGTAAA
1 TAATTAAA
10149040 GAGAAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (9 bp):
TAATTAAAC
Found at i:10149028 original size:17 final size:17
Alignment explanation
Indices: 10149006--10149039 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10148996 TTAAACTAAT
*
10149006 TAATTAAACTAATTAAA
1 TAATTAAACTAAGTAAA
10149023 TAATTAAACTAAGTAAA
1 TAATTAAACTAAGTAAA
10149040 GAGAAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAACTAAGTAAA
Found at i:10151952 original size:6 final size:6
Alignment explanation
Indices: 10151943--10151987 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
10151933 AATAAAATTT
* * *
10151943 AAATGA AAATAA AAATAA AAAGAA GAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
10151988 GATAAGAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:10157364 original size:13 final size:13
Alignment explanation
Indices: 10157346--10157372 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10157336 GGGATTGTTT
10157346 ATTAAACTAATTA
1 ATTAAACTAATTA
10157359 ATTAAACTAATTA
1 ATTAAACTAATTA
10157372 A
1 A
10157373 ATAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:10157369 original size:9 final size:9
Alignment explanation
Indices: 10157357--10157390 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
10157347 TTAAACTAAT
10157357 TAATTAAAC
1 TAATTAAAC
10157366 TAATTAAA-
1 TAATTAAAC
10157374 TAATTAAAC
1 TAATTAAAC
*
10157383 TAAGTAAA
1 TAATTAAA
10157391 GAGAAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (9 bp):
TAATTAAAC
Found at i:10157379 original size:17 final size:17
Alignment explanation
Indices: 10157357--10157390 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10157347 TTAAACTAAT
*
10157357 TAATTAAACTAATTAAA
1 TAATTAAACTAAGTAAA
10157374 TAATTAAACTAAGTAAA
1 TAATTAAACTAAGTAAA
10157391 GAGAAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAACTAAGTAAA
Found at i:10169241 original size:46 final size:46
Alignment explanation
Indices: 10169067--10169248 Score: 231
Period size: 46 Copynumber: 4.0 Consensus size: 46
10169057 TTTAACATGA
* * * * *
10169067 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * * *
10169113 TGCCATGGTATCTTTTAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
10169159 TGCCATGGTATCTTTCAACCATTGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
10169205 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
10169249 AAAGCACACT
Statistics
Matches: 120, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 4 0.03
46 116 0.97
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:10171349 original size:14 final size:11
Alignment explanation
Indices: 10171313--10171344 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
10171303 CTTTATATAC
10171313 TAATAAAATAT
1 TAATAAAATAT
10171324 TAATAAAATAT
1 TAATAAAATAT
10171335 TAATAAAATA
1 TAATAAAATA
10171345 ATATTTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:10172980 original size:30 final size:30
Alignment explanation
Indices: 10172926--10172983 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
10172916 CACGGCCATG
* *
10172926 ACACACGGGCGTGTGGCCTACCCGTGTGTC
1 ACACACGGGCATGTGGACTACCCGTGTGTC
* *
10172956 ACACACGGGCATGTGGATTGCCCGTGTG
1 ACACACGGGCATGTGGACTACCCGTGTG
10172984 GAACTGCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (30 bp):
ACACACGGGCATGTGGACTACCCGTGTGTC
Found at i:10175050 original size:11 final size:11
Alignment explanation
Indices: 10175030--10175068 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
10175020 AAATAGAACT
*
10175030 AAAAATAAAAG
1 AAAAAGAAAAG
10175041 AAAAAGAAAAAG
1 AAAAAG-AAAAG
10175053 AAAAAGAAAAG
1 AAAAAGAAAAG
10175064 CAAAA
1 -AAAA
10175069 TAAAGTAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:10175068 original size:6 final size:6
Alignment explanation
Indices: 10175036--10175062 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10175026 AACTAAAAAT
10175036 AAAAGA AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAA
10175063 GCAAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:10175068 original size:12 final size:11
Alignment explanation
Indices: 10175030--10175068 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
10175020 AAATAGAACT
*
10175030 AAAAATAAAAG
1 AAAAAGAAAAG
10175041 AAAAAGAAAAAG
1 AAAAAG-AAAAG
10175053 AAAAAGAAAAG
1 AAAAAGAAAAG
*
10175064 CAAAA
1 AAAAA
10175069 TAAAGTAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:10176340 original size:28 final size:27
Alignment explanation
Indices: 10176309--10176363 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
10176299 TTTATTATTT
* *
10176309 TTCAATAGCAATTAATCAATCAGTAATA
1 TTCAATAACAATCAATCAATCAG-AATA
* *
10176337 TTCATTAACAATCAGTCAATCAGAATA
1 TTCAATAACAATCAATCAATCAGAATA
10176364 ATTATTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.31
Consensus pattern (27 bp):
TTCAATAACAATCAATCAATCAGAATA
Found at i:10176392 original size:18 final size:18
Alignment explanation
Indices: 10176325--10176520 Score: 106
Period size: 18 Copynumber: 10.3 Consensus size: 18
10176315 AGCAATTAAT
*
10176325 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* *
10176345 CAATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* * *
10176362 TAATTATTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* *
10176380 CAGTCAGTTATTCGGTAA
1 CAATCAGTTATTCAGTAA
* *
10176398 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
*
10176416 TAATCAGTTATTCAGTATCAA
1 CAATCAGTTATTCAG--T-AA
* *
10176437 TCAATTGATTGGTTATCCAGTAA
1 -CAA-TCA---GTTATTCAGTAA
* *
10176460 CAGTCAATTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* * *
10176478 AAATCAGATATACAGTAA
1 CAATCAGTTATTCAGTAA
* *
10176496 CAATTAAATTATTCAGTAA
1 CAA-TCAGTTATTCAGTAA
10176515 CAATCA
1 CAATCA
10176521 ATCTTTCTAG
Statistics
Matches: 128, Mismatches: 38, Indels: 22
0.68 0.20 0.12
Matches are distributed among these distances:
17 12 0.09
18 72 0.56
19 14 0.11
20 9 0.07
21 4 0.03
22 4 0.03
23 4 0.03
24 1 0.01
26 8 0.06
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.34
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:10186207 original size:26 final size:26
Alignment explanation
Indices: 10186148--10186210 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
10186138 TCACATATAT
10186148 TCATAAAT-CAATTCAATATAATCAA
1 TCATAAATCCAATTCAATATAATCAA
* *
10186173 T-ATTCAATCCAATTCAA-ATAATCATC
1 TCA-TAAATCCAATTCAATATAATCA-A
10186199 TCATAAATCCAA
1 TCATAAATCCAA
10186211 CAATTTAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 1 0.03
25 12 0.39
26 17 0.55
27 1 0.03
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.32
Consensus pattern (26 bp):
TCATAAATCCAATTCAATATAATCAA
Found at i:10186413 original size:27 final size:28
Alignment explanation
Indices: 10186361--10186413 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
10186351 AATTCCTCAT
*
10186361 TTTCCCTCTTTCTCTTTTTCCTTCTTTC
1 TTTCCCTCTCTCTCTTTTTCCTTCTTTC
* *
10186389 TTTCCCT-TCTCTGTTTTTCGTTCTT
1 TTTCCCTCTCTCTCTTTTTCCTTCTT
10186414 CATTCTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.00, C:0.32, G:0.04, T:0.64
Consensus pattern (28 bp):
TTTCCCTCTCTCTCTTTTTCCTTCTTTC
Found at i:10186789 original size:35 final size:31
Alignment explanation
Indices: 10186725--10186793 Score: 84
Period size: 35 Copynumber: 2.1 Consensus size: 31
10186715 TATTTATCAT
* *
10186725 ATAAATATCTTATAATATAATTATTTATTTA
1 ATAAATATCTTATAATATAAATATCTATTTA
10186756 ATAAATATCTTTTATAAATAATAAATATCTATTTA
1 ATAAATATC--TTAT-AAT-ATAAATATCTATTTA
10186791 ATA
1 ATA
10186794 TCAAATACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 9 0.28
33 4 0.12
34 3 0.09
35 16 0.50
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (31 bp):
ATAAATATCTTATAATATAAATATCTATTTA
Found at i:10189773 original size:16 final size:17
Alignment explanation
Indices: 10189749--10189782 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
10189739 TAGTAACAAG
*
10189749 ATCTGCCTTAGGT-TTT
1 ATCTCCCTTAGGTATTT
10189765 ATCTCCCTTAGGTATTT
1 ATCTCCCTTAGGTATTT
10189782 A
1 A
10189783 GGGGATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (17 bp):
ATCTCCCTTAGGTATTT
Found at i:10192183 original size:7 final size:7
Alignment explanation
Indices: 10192173--10192200 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
10192163 AAGATAAAAG
10192173 TAAATAA
1 TAAATAA
10192180 TAAATAA
1 TAAATAA
10192187 TAAATAA
1 TAAATAA
10192194 TAAATAA
1 TAAATAA
10192201 AAGTCTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TAAATAA
Found at i:10207485 original size:16 final size:16
Alignment explanation
Indices: 10207434--10207502 Score: 54
Period size: 17 Copynumber: 4.1 Consensus size: 16
10207424 CACTTTAATA
*
10207434 TTAAATTAATATAATAC
1 TTAAATTAATAT-ATAT
10207451 TTAAGTATTAGAT-TATAT
1 TTAA--ATTA-ATATATAT
10207469 TTAATATTAA-ATATA-
1 TTAA-ATTAATATATAT
10207484 TTAAATTAATATAATAT
1 TTAAATTAATAT-ATAT
10207501 TT
1 TT
10207503 TACCTACAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
14 5 0.11
15 6 0.14
16 8 0.18
17 11 0.25
18 7 0.16
19 5 0.11
20 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (16 bp):
TTAAATTAATATATAT
Found at i:10210114 original size:20 final size:20
Alignment explanation
Indices: 10210073--10210115 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10210063 ATTCGACCAA
*
10210073 TTTTGGGTCTCAGTCTCGAT
1 TTTTGGGTCTCAGTCTCAAT
* *
10210093 TTTTGGGTCTCGGTTTCAAT
1 TTTTGGGTCTCAGTCTCAAT
10210113 TTT
1 TTT
10210116 CAATCTCAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.23, T:0.51
Consensus pattern (20 bp):
TTTTGGGTCTCAGTCTCAAT
Found at i:10211180 original size:22 final size:22
Alignment explanation
Indices: 10211152--10211197 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
10211142 TTGGAATTGT
10211152 AGACACCATAATAATCTTTCTA
1 AGACACCATAATAATCTTTCTA
10211174 AGACACCATAATAATCTTTCTA
1 AGACACCATAATAATCTTTCTA
10211196 AG
1 AG
10211198 TATTTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (22 bp):
AGACACCATAATAATCTTTCTA
Found at i:10212498 original size:22 final size:22
Alignment explanation
Indices: 10212474--10212517 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
10212464 TATGAAGTAA
*
10212474 TTTACAAATTTATACTATTTTAT
1 TTTACAAAATTATA-TATTTTAT
*
10212497 TTTCCAAAATTATATATTTTA
1 TTTACAAAATTATATATTTTA
10212518 GCATGTAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTACAAAATTATATATTTTAT
Found at i:10213903 original size:24 final size:24
Alignment explanation
Indices: 10213876--10213927 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
10213866 TTAGTAAGTC
*
10213876 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
10213900 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
10213924 AAAT
1 AAAT
10213928 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:10215871 original size:24 final size:24
Alignment explanation
Indices: 10215844--10215895 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
10215834 TTAGTAAGTC
*
10215844 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
10215868 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
10215892 AAAT
1 AAAT
10215896 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:10217934 original size:24 final size:24
Alignment explanation
Indices: 10217907--10217958 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
10217897 TTAGTAAGTC
*
10217907 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
10217931 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
10217955 AAAT
1 AAAT
10217959 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:10219904 original size:24 final size:24
Alignment explanation
Indices: 10219877--10219928 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
10219867 TTAGTAAGTC
*
10219877 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
10219901 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
10219925 AAAT
1 AAAT
10219929 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:10232341 original size:23 final size:23
Alignment explanation
Indices: 10232315--10232359 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
10232305 TAGGTATGTG
*
10232315 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
10232338 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
10232360 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:10234020 original size:12 final size:12
Alignment explanation
Indices: 10233980--10234013 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
10233970 TTATCTACAA
*
10233980 TACAAATATAAG
1 TACAAATATAAC
10233992 TACAAA-ATAAC
1 TACAAATATAAC
10234003 TACAAATATAA
1 TACAAATATAA
10234014 TTCCAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.24
Consensus pattern (12 bp):
TACAAATATAAC
Found at i:10234486 original size:20 final size:20
Alignment explanation
Indices: 10234461--10234511 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
10234451 ATTTTTTAAC
10234461 AAAAATTGTAAAAAAAAATA
1 AAAAATTGTAAAAAAAAATA
* *
10234481 AAAAATCT-TATAAATAAATA
1 AAAAAT-TGTAAAAAAAAATA
10234501 AATAAATTGTA
1 AA-AAATTGTA
10234512 TAAAGACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAAATTGTAAAAAAAAATA
Found at i:10237025 original size:56 final size:56
Alignment explanation
Indices: 10236939--10237050 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
10236929 AGAATTCCAC
10236939 GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
1 GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
10236995 GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
1 GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
10237051 ATGGAATGGC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.34, C:0.16, G:0.36, T:0.14
Consensus pattern (56 bp):
GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
Found at i:10247249 original size:9 final size:9
Alignment explanation
Indices: 10247235--10247286 Score: 95
Period size: 9 Copynumber: 5.8 Consensus size: 9
10247225 TTTGGTTAAA
10247235 AATTACCCG
1 AATTACCCG
10247244 AATTACCCG
1 AATTACCCG
10247253 AATTACCCG
1 AATTACCCG
10247262 AATTACCCG
1 AATTACCCG
*
10247271 AATTAACCG
1 AATTACCCG
10247280 AATTACC
1 AATTACC
10247287 GAAAAATACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.37, C:0.31, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:10256349 original size:16 final size:17
Alignment explanation
Indices: 10256323--10256361 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
10256313 TTAAAAGAAT
*
10256323 AATTTTATTATTATATA
1 AATTTTATTATTATAAA
*
10256340 AATTTT-TTATTTTAAA
1 AATTTTATTATTATAAA
10256356 AATTTT
1 AATTTT
10256362 GAAAGAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTTTATTATTATAAA
Found at i:10256987 original size:23 final size:23
Alignment explanation
Indices: 10256936--10256993 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
10256926 CTTTTAATGT
*
10256936 TATATTTTTAAAAAAATAAAATA
1 TATATTTTTAAATAAATAAAATA
* * * *
10256959 TGTATTTTTAAATATATTAATTA
1 TATATTTTTAAATAAATAAAATA
10256982 TATA-TTTTAAAT
1 TATATTTTTAAAT
10256994 TAATTTCCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
22 8 0.28
23 21 0.72
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TATATTTTTAAATAAATAAAATA
Found at i:10264077 original size:23 final size:23
Alignment explanation
Indices: 10264047--10264097 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
10264037 TTTGTTTATT
10264047 TAGATTTGACCTGATTCAAAATG
1 TAGATTTGACCTGATTCAAAATG
10264070 TAGATTTGACCTGATTCAAAATG
1 TAGATTTGACCTGATTCAAAATG
10264093 TAGAT
1 TAGAT
10264098 ATTTCTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (23 bp):
TAGATTTGACCTGATTCAAAATG
Found at i:10266677 original size:68 final size:68
Alignment explanation
Indices: 10266582--10266786 Score: 216
Period size: 69 Copynumber: 3.0 Consensus size: 68
10266572 AGTGTAAGTG
* * * * *
10266582 TGAG-TATAGGAGTGTTCTTTAGCCAATGTGAGATTAAAATTAACTTTTAGTGAAAATAGTGTAG
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
10266646 AAA
66 AAA
* * *
10266649 TGAGCTATGGGAGTATTCTCTAGTCAATGT-AGAATAAAAATTAACTTTTGAATGAAAGTAGTGA
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAG-ATTAAAATTAACTTTT-AATGAAAATAGTGA
*
10266713 AGAAG
64 AGAAA
* * * * * * * * *
10266718 CGAGCTACAAGTGTATTCTCTAATCAATGTGAGATTAAATTTAAATTTTAATGAAAATTGCGAAG
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
10266783 AAA
66 AAA
10266786 T
1 T
10266787 TACACTTACT
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
67 6 0.05
68 51 0.46
69 52 0.47
70 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (68 bp):
TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
AAA
Found at i:10266984 original size:51 final size:51
Alignment explanation
Indices: 10266876--10266985 Score: 125
Period size: 51 Copynumber: 2.2 Consensus size: 51
10266866 ATTAATTTTT
* **
10266876 AATAAAATAATGAAGAAGTGAGCTATAAGAGTATTTCATAGTCAATGTAGA
1 AATAAAATAATGAAGAAGTGAGCTATAAGAATATTTCATAGTCAACATAGA
* * *
10266927 AATAAAATAATTGAA-AAGTGTGCTATGAGAATATTCTC-TAGTCAACATGGA
1 AATAAAATAA-TGAAGAAGTGAGCTATAAGAATATT-TCATAGTCAACATAGA
*
10266978 ATTAAAAT
1 AATAAAAT
10266986 TAACTTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 44 0.88
52 6 0.12
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.29
Consensus pattern (51 bp):
AATAAAATAATGAAGAAGTGAGCTATAAGAATATTTCATAGTCAACATAGA
Found at i:10267169 original size:36 final size:36
Alignment explanation
Indices: 10267122--10267194 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
10267112 TATATATATA
10267122 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
1 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
10267158 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
1 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
10267194 T
1 T
10267195 CTAGAAAGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (36 bp):
TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
Found at i:10276541 original size:18 final size:18
Alignment explanation
Indices: 10276518--10276573 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
10276508 AAAAAAAGGA
10276518 AAATTAAATAATAAATTT
1 AAATTAAATAATAAATTT
10276536 AAATT--AT-A-AAATTT
1 AAATTAAATAATAAATTT
* *
10276550 ATATTCAAAAAAT-AATTT
1 AAATT-AAATAATAAATTT
10276568 AAATTA
1 AAATTA
10276574 TTCATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 11
0.68 0.07 0.25
Matches are distributed among these distances:
14 10 0.33
15 1 0.03
16 2 0.07
17 2 0.07
18 15 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATTAAATAATAAATTT
Found at i:10282380 original size:12 final size:12
Alignment explanation
Indices: 10282359--10282392 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10282349 ATATATTTTT
*
10282359 AAAATTATATAA
1 AAAATAATATAA
10282371 AAAATAATATAA
1 AAAATAATATAA
*
10282383 AAATTAATAT
1 AAAATAATAT
10282393 GGGCTGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:10284339 original size:22 final size:22
Alignment explanation
Indices: 10284314--10284356 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10284304 TATAATTATG
* *
10284314 AAATTTAAATATTAAAATAAAA
1 AAATATAAATATCAAAATAAAA
*
10284336 AAATATAAATATCAAAGTAAA
1 AAATATAAATATCAAAATAAA
10284357 CTATAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (22 bp):
AAATATAAATATCAAAATAAAA
Found at i:10290391 original size:20 final size:19
Alignment explanation
Indices: 10290348--10290391 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
10290338 ACAATTAAAG
*
10290348 AAAA-CAAATAATAAATAA
1 AAAAGCAAATAAAAAATAA
10290366 ATAAAGCAAATAAAAAATGAA
1 A-AAAGCAAATAAAAAAT-AA
10290387 AAAAG
1 AAAAG
10290392 TCTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 3 0.14
20 15 0.68
21 3 0.14
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.14
Consensus pattern (19 bp):
AAAAGCAAATAAAAAATAA
Found at i:10300654 original size:7 final size:7
Alignment explanation
Indices: 10300642--10300667 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10300632 GTTATAAAGT
10300642 TTTATTC
1 TTTATTC
10300649 TTTATTC
1 TTTATTC
10300656 TTTATTC
1 TTTATTC
10300663 TTTAT
1 TTTAT
10300668 ATACATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTC
Found at i:10302865 original size:14 final size:14
Alignment explanation
Indices: 10302846--10302878 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
10302836 CATGCGTTAG
10302846 TTGTGATTTAGTTT
1 TTGTGATTTAGTTT
10302860 TTGTGATTTAGTTT
1 TTGTGATTTAGTTT
10302874 TTGTG
1 TTGTG
10302879 CTTTGAGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.24, T:0.64
Consensus pattern (14 bp):
TTGTGATTTAGTTT
Found at i:10310249 original size:108 final size:108
Alignment explanation
Indices: 10310135--10310340 Score: 344
Period size: 108 Copynumber: 1.9 Consensus size: 108
10310125 GTTGGACTGA
*
10310135 TAGATCACGACATGAGAATGTGTAAGTCCATGTGGCT-AAGACTCAT-GACAATATATGATTGTA
1 TAGATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAA-ACCCATAG-CAATATATGATTGTA
*
10310198 TGAATGTTCATGGTGAAGCCTGCGATAATGTGTAGATTGAATTGG
64 TGAATGTTCATGGTGAAGCCTGCAATAATGTGTAGATTGAATTGG
*
10310243 TAGATCACGACATGAGAATGTGTAAGTCCATGTGGTTGAAACCCATAGCAATATATGATTGTATG
1 TAGATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAAACCCATAGCAATATATGATTGTATG
*
10310308 AATGTTCATGGTGAAGCCTTCAATAATGTGTAG
66 AATGTTCATGGTGAAGCCTGCAATAATGTGTAG
10310341 GTCAAACTAG
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
108 89 0.97
109 3 0.03
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.31
Consensus pattern (108 bp):
TAGATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAAACCCATAGCAATATATGATTGTATG
AATGTTCATGGTGAAGCCTGCAATAATGTGTAGATTGAATTGG
Found at i:10310356 original size:108 final size:108
Alignment explanation
Indices: 10310136--10310365 Score: 338
Period size: 108 Copynumber: 2.1 Consensus size: 108
10310126 TTGGACTGAT
*
10310136 AGATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACTCATGACAATATATGATTGTATGA
1 AGATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACCCATGACAATATATGATTGTATGA
* ** * * *
10310201 ATGTTCATGGTGAAGCCTGCGATAATGTGTAGATTGAATTGGT
66 ATGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGA
*
10310244 AGATCACGACATGAGAATGTGTAAGTCCATGTGGTTGAA-ACCCAT-AGCAATATATGATTGTAT
1 AGATCACGACATGAGAATGTGTAAGTCCATGTGGCT-AAGACCCATGA-CAATATATGATTGTAT
* *
10310307 GAATGTTCATGGTGAAGCCTTCAATAATGTGTAGGTCAAACTAGA
64 GAATGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGA
10310352 AGATCACGACATGA
1 AGATCACGACATGA
10310366 AATTATGTGC
Statistics
Matches: 110, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
107 1 0.01
108 107 0.97
109 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (108 bp):
AGATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACCCATGACAATATATGATTGTATGA
ATGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGA
Done.