Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 44 of 316
Found at i:12582296 original size:20 final size:20
Alignment explanation
Indices: 12582271--12582310 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
12582261 AGCAGCACAG
12582271 ATGCAATGAAAGATCCATCA
1 ATGCAATGAAAGATCCATCA
12582291 ATGCAATGAAAGATCCATCA
1 ATGCAATGAAAGATCCATCA
12582311 GCTTGATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.20
Consensus pattern (20 bp):
ATGCAATGAAAGATCCATCA
Found at i:12585612 original size:116 final size:115
Alignment explanation
Indices: 12585409--12585628 Score: 323
Period size: 116 Copynumber: 1.9 Consensus size: 115
12585399 CACATTAATC
* *
12585409 AGTTTAGCTTTTAAAATATTGTAGAGGTGGGCCTCACGTACCAGGAGGCCCATTACTGAATATAT
1 AGTTTAGCTTTTAAAATATTGTAGAGGTGGGCCTCACGTACCAAGAGGCCCATTACAGAATATAT
* *
12585474 CACAATCTGACTTGTAAATAACATTTACTAGTAAGATGACCAAATTGTTA
66 CACAATCTGACCTGTAAATAACATCTACTAGTAAGATGACCAAATTGTTA
* * * *
12585524 AGTTTAGTTTTTAATATATTGTAGAGGTGGGGCCTCACGTATCAAGAGGCCCATTGCAGAATATA
1 AGTTTAGCTTTTAAAATATTGTAGAGGT-GGGCCTCACGTACCAAGAGGCCCATTACAGAATATA
* * * *
12585589 TTACAATTTGGCCTGTGAATAACATCTACTAGTAAGATGA
65 TCACAATCTGACCTGTAAATAACATCTACTAGTAAGATGA
12585629 TCTAACAATT
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
115 26 0.28
116 66 0.72
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (115 bp):
AGTTTAGCTTTTAAAATATTGTAGAGGTGGGCCTCACGTACCAAGAGGCCCATTACAGAATATAT
CACAATCTGACCTGTAAATAACATCTACTAGTAAGATGACCAAATTGTTA
Found at i:12588361 original size:17 final size:16
Alignment explanation
Indices: 12588330--12588367 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
12588320 TAATTTCCCT
*
12588330 TTTCTTTTTCTTTTTC
1 TTTCTATTTCTTTTTC
12588346 TTTCTATTTCTCTTTTC
1 TTTCTATTTCT-TTTTC
12588363 TTTCT
1 TTTCT
12588368 CTCTTTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTCTATTTCTTTTTC
Found at i:12588370 original size:13 final size:12
Alignment explanation
Indices: 12588328--12588374 Score: 55
Period size: 13 Copynumber: 4.0 Consensus size: 12
12588318 CCTAATTTCC
12588328 CTTTTCT-TTTT
1 CTTTTCTCTTTT
12588339 CTTTT-TC-TTT
1 CTTTTCTCTTTT
12588349 CTATTTCTCTTTT
1 CT-TTTCTCTTTT
12588362 CTTTCTCTCTTTT
1 CTTT-TCTCTTTT
12588375 TTGTTTCAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
10 6 0.19
11 8 0.26
12 4 0.13
13 13 0.42
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.74
Consensus pattern (12 bp):
CTTTTCTCTTTT
Found at i:12588395 original size:32 final size:31
Alignment explanation
Indices: 12588355--12588414 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
12588345 CTTTCTATTT
*
12588355 CTCTTTTCTTTCT-CTCTTTTTTGTTTCAGCC
1 CTCTTTTCTTTCTGAT-TTTTTTGTTTCAGCC
*
12588386 CTCTATTTCTTTTTGATTTTTTTGTTTCA
1 CTCT-TTTCTTTCTGATTTTTTTGTTTCA
12588415 TTTATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 4 0.16
32 20 0.80
33 1 0.04
ACGTcount: A:0.07, C:0.22, G:0.07, T:0.65
Consensus pattern (31 bp):
CTCTTTTCTTTCTGATTTTTTTGTTTCAGCC
Found at i:12589464 original size:20 final size:19
Alignment explanation
Indices: 12589426--12589473 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
12589416 TAAATTCTAA
*
12589426 AAAGATAAATACAATTAATT
1 AAAGATAAATACAAATAA-T
12589446 AAAGATAAATA-AAGATAAT
1 AAAGATAAATACAA-ATAAT
*
12589465 AAAAATAAA
1 AAAGATAAA
12589474 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (19 bp):
AAAGATAAATACAAATAAT
Found at i:12589498 original size:27 final size:26
Alignment explanation
Indices: 12589468--12589529 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
12589458 AGATAATAAA
12589468 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
12589495 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
12589522 AATAAAAT
1 AATAAAAT
12589530 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:12594208 original size:19 final size:19
Alignment explanation
Indices: 12594184--12594274 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
12594174 ATAATCTTCA
12594184 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
12594203 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
12594222 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
12594239 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
12594257 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
12594275 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 16 0.24
19 36 0.54
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:12594259 original size:35 final size:37
Alignment explanation
Indices: 12594184--12594281 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
12594174 ATAATCTTCA
12594184 ATGATATGCAATCTTAGATATGATATGCAATCTTAAAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAAAT
*
12594222 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAAAT
12594257 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
12594282 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 21 0.38
36 19 0.34
37 10 0.18
38 6 0.11
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAAAT
Found at i:12602018 original size:89 final size:89
Alignment explanation
Indices: 12601867--12602044 Score: 356
Period size: 89 Copynumber: 2.0 Consensus size: 89
12601857 AGAAAGTCTT
12601867 CATGGAACTGGCATATAAACGCTCAAGCGGCGATATCTAAGGCATCTAACTTTTGTCCTATTTGC
1 CATGGAACTGGCATATAAACGCTCAAGCGGCGATATCTAAGGCATCTAACTTTTGTCCTATTTGC
12601932 TATCTTTAGATTCTTTTTCTTCTC
66 TATCTTTAGATTCTTTTTCTTCTC
12601956 CATGGAACTGGCATATAAACGCTCAAGCGGCGATATCTAAGGCATCTAACTTTTGTCCTATTTGC
1 CATGGAACTGGCATATAAACGCTCAAGCGGCGATATCTAAGGCATCTAACTTTTGTCCTATTTGC
12602021 TATCTTTAGATTCTTTTTCTTCTC
66 TATCTTTAGATTCTTTTTCTTCTC
12602045 AAAGATAGGC
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (89 bp):
CATGGAACTGGCATATAAACGCTCAAGCGGCGATATCTAAGGCATCTAACTTTTGTCCTATTTGC
TATCTTTAGATTCTTTTTCTTCTC
Found at i:12603304 original size:298 final size:298
Alignment explanation
Indices: 12602880--12603601 Score: 1255
Period size: 298 Copynumber: 2.4 Consensus size: 298
12602870 TCGAGGAATC
12602880 TCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAG
1 TCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAG
*
12602945 ATGATTTAGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGAT
66 ATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGAT
12603010 GTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTAACAAGGAGTAGATCAAAG
131 GTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTAACAAGGAGTAGATCAAAG
* *
12603075 ACATAGTAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGT
196 ACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTAT
* *
12603140 ACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATA
261 ACTGTCAAAGAACAAATCGAAGAAACAAATTTGGCATA
* *
12603178 TCCATATTCGACGGAGAGGAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAG
1 TCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAG
** *
12603243 ATGATTTGGCATCTCTGTATTAGACGATGAGTAGATCGAAGACATAGCAGATCTAACCTTCGGAT
66 ATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGAT
* * * *
12603308 GTTTTTACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGTAGATCGAAG
131 GTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTAACAAGGAGTAGATCAAAG
12603373 ACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTAT
196 ACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTAT
*
12603438 ACTGTCAAAGAACAAATCGAAGAAACAAATTTGGCATC
261 ACTGTCAAAGAACAAATCGAAGAAACAAATTTGGCATA
* *
12603476 TCCATATTCGACAGAGTGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAG
1 TCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAG
* * * *
12603541 ATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACACAGTAGATCTGACCTTC
66 ATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTC
12603602 ATTGAAGCAG
Statistics
Matches: 398, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
298 398 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (298 bp):
TCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAG
ATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGAT
GTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTAACAAGGAGTAGATCAAAG
ACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTAT
ACTGTCAAAGAACAAATCGAAGAAACAAATTTGGCATA
Found at i:12603400 original size:89 final size:89
Alignment explanation
Indices: 12603228--12603432 Score: 231
Period size: 89 Copynumber: 2.3 Consensus size: 89
12603218 TGACCTTCAT
* * *
12603228 TGAAGCAGATCCAAGATGATTTGGCAT-CTCTGTATTAGACGATGAGTAGATCGAAGACATAGCA
1 TGAAGCAGATCCAAGATGATTTGGCATCCTCTGCATTAGACAAGGAGTAGATCGAAGACATAGCA
* *
12603292 GATCTAACCTTCGGATGTTTTTAC-A
66 GATCTAACCTTCCGATG--TTTACGC
* *
12603317 TCGAAGTAGATCCAAGATGATTTGGCATCCT-TGCGTT-GACAAGGAGTAGATCGAAGACATAGC
1 T-GAAGCAGATCCAAGATGATTTGGCATCCTCTGCATTAGACAAGGAGTAGATCGAAGACATAGC
* ** *
12603380 AGATTTGGCTTTCACG-TGTTTACGC
65 AGATCTAACCTTC-CGATGTTTACGC
*
12603405 TGAAGCAGATCTAAGATGATTTGGCATC
1 TGAAGCAGATCCAAGATGATTTGGCATC
12603433 TCTATACTGT
Statistics
Matches: 99, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
87 30 0.30
88 1 0.01
89 36 0.36
90 30 0.30
91 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (89 bp):
TGAAGCAGATCCAAGATGATTTGGCATCCTCTGCATTAGACAAGGAGTAGATCGAAGACATAGCA
GATCTAACCTTCCGATGTTTACGC
Found at i:12603597 original size:78 final size:78
Alignment explanation
Indices: 12603466--12603759 Score: 394
Period size: 78 Copynumber: 3.8 Consensus size: 78
12603456 GAAGAAACAA
** * * * *
12603466 ATTTGGCATCTCCATATTCGACAGAGTGCAGATC-AAAGACATAGCAGATCTGACCTTCATTGAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAA-ACATAGCAGATCTGACCTTCATTGAA
12603530 GCAGATCCAAGATG
65 GCAGATCCAAGATG
* *
12603544 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACACAGTAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATTGAAG
12603609 CAGATCCAAGATG
66 CAGATCCAAGATG
* * * * *
12603622 ATTTGGCATCTCTGAATTAGACGGGGAGCAGATCGAAGACATAACATAT-TGGACCTTCTTTGAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACATAGCAGATCT-GACCTTCATTGAA
* *
12603686 ACAAATCCAAGATG
65 GCAGATCCAAGATG
* * *
12603700 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCAGATCTGACCTTCAT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCAT
12603760 GTGTTTACGT
Statistics
Matches: 190, Mismatches: 23, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
77 1 0.01
78 185 0.97
79 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (78 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGATG
Found at i:12603852 original size:45 final size:45
Alignment explanation
Indices: 12603699--12603972 Score: 257
Period size: 45 Copynumber: 6.1 Consensus size: 45
12603689 AATCCAAGAT
* * *
12603699 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * * *
12603746 GATCTGACCT-TCATGTGTT-TACGTCGAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGTATTAGACG-GGGAGCAGATCGAAGATAACA
* *
12603791 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
12603836 GATTTGGCATCTCTGTATCAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
12603880 GATTTGACGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * * * *
12603925 AATTTGGCGTCTCTGTATTAGACAGGGAGCAGACCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
12603970 GAT
1 GAT
12603973 ATTGCCTTCC
Statistics
Matches: 181, Mismatches: 41, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
44 38 0.21
45 110 0.61
46 10 0.06
47 23 0.13
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:12603902 original size:89 final size:89
Alignment explanation
Indices: 12603789--12603957 Score: 257
Period size: 89 Copynumber: 1.9 Consensus size: 89
12603779 TCCAAGATGA
* * * *
12603789 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGACATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAAATTTGGCATCTCTGTAT
*
12603854 CAGACGGGGAGCAGATTGAAGAAG
66 CAGACAGGGAGCAGATTGAAGAAG
* * *
12603878 CAGATTTGACGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTAT
1 CAGATTTGACATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAAATTTGGCATCTCTGTAT
*
12603943 TAGACAGGGAGCAGA
66 CAGACAGGGAGCAGA
12603958 CCAAAGATAG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (89 bp):
CAGATTTGACATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAAATTTGGCATCTCTGTAT
CAGACAGGGAGCAGATTGAAGAAG
Found at i:12603944 original size:134 final size:136
Alignment explanation
Indices: 12603699--12603955 Score: 344
Period size: 134 Copynumber: 1.9 Consensus size: 136
12603689 AATCCAAGAT
* * *
12603699 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATCAGACGGGGAGCAGATTGAAGA-ATAGCAGATCTGACCTTCATGTGA
* * * *
12603764 TTACGTCGAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGA
65 TTACGACGAAGCAGATCCAAGATAACAAATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGGA
12603829 GATAACA
130 GATAACA
* *
12603836 GATTTGGCATCTCTGTATCAGACGGGGAGCAGATTGAAG-A-AGCAGATTTGACGTCTC-TGT-A
1 GATTTGGCATCTCTGTATCAGACGGGGAGCAGATTGAAGAATAGCAGATCTGACCT-TCATGTGA
* *
12603897 TTA-GACGAGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACAGGGAGCA
65 TTACGACGA--AGCAGATCCAAGATAACAAATTTGGCATCTCTGTATTAGACAGGGAGCA
12603956 GACCAAAGAT
Statistics
Matches: 106, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
132 4 0.04
133 3 0.03
134 59 0.56
135 3 0.03
137 37 0.35
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATCAGACGGGGAGCAGATTGAAGAATAGCAGATCTGACCTTCATGTGAT
TACGACGAAGCAGATCCAAGATAACAAATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGGAG
ATAACA
Found at i:12604417 original size:17 final size:19
Alignment explanation
Indices: 12604320--12604410 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
12604310 ATAATCTTCA
12604320 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
12604339 ATGATATGCAATTTTAGAT
1 ATGATATGCAATCTTAGAT
12604358 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
12604375 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
12604393 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
12604411 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 16 0.24
19 36 0.54
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:12604436 original size:22 final size:22
Alignment explanation
Indices: 12604320--12604433 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
12604310 ATAATCTTCA
12604320 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
12604339 ATGATATGCAAT-TT--TAGAT
1 ATGATATGCAATCTTAGAAGAT
12604358 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
12604375 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
12604393 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
12604415 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
12604434 GATTTAATTT
Statistics
Matches: 84, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
17 13 0.15
18 20 0.24
19 31 0.37
22 8 0.10
23 12 0.14
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:12604725 original size:18 final size:19
Alignment explanation
Indices: 12604702--12604737 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
12604692 TTTCCCTAAT
*
12604702 TTTTTTTATAT-ATTTTAA
1 TTTTTTTAAATAATTTTAA
12604720 TTTTTTTAAATAATTTTA
1 TTTTTTTAAATAATTTTA
12604738 GTATTATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTTAAATAATTTTAA
Found at i:12609341 original size:15 final size:16
Alignment explanation
Indices: 12609308--12609342 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
12609298 TGAAGGAAAC
12609308 AAAATTGAAAAGATGG
1 AAAATTGAAAAGATGG
*
12609324 AAAATTGAAAGGAT-G
1 AAAATTGAAAAGATGG
12609339 AAAA
1 AAAA
12609343 CTAGAAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (16 bp):
AAAATTGAAAAGATGG
Found at i:12610128 original size:19 final size:19
Alignment explanation
Indices: 12610095--12610142 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
12610085 TAAAAAATTC
12610095 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
12610112 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
12610131 AATAATATAAAT
1 AATAATATAAAT
12610143 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:12613920 original size:26 final size:25
Alignment explanation
Indices: 12613847--12614093 Score: 128
Period size: 26 Copynumber: 9.6 Consensus size: 25
12613837 GATTATTAAC
* * *
12613847 TTTTATATATTATTTATCTTAGATTT
1 TTTTATATATTA-TTATTTTAAATTA
*
12613873 TTTTATATAAATTATTTGTTTTAAATTA
1 TTTTATAT--ATTA-TTATTTTAAATTA
*
12613901 TTTTACATATTATCTATTTTAAATT-
1 TTTTATATATTAT-TATTTTAAATTA
* * * * * *
12613926 TTCATGTGTAATATTTAATTTAAACTA
1 TT-TTATATATTA-TTATTTTAAATTA
*
12613953 TTTTATATGTTATTCATTTTAAATT-
1 TTTTATATATTATT-ATTTTAAATTA
* * *
12613978 TGTTTATATATTATTCTTTTTAAACTG
1 T-TTTATATATTATT-ATTTTAAATTA
* *
12614005 TTTTA-ATACATATTATTTTGAATTA
1 TTTTATATA-TTATTATTTTAAATTA
* * *
12614030 TTTTATATATTAATTACTTTACATTG
1 TTTTATATATT-ATTATTTTAAATTA
* *
12614056 CTTTATTTA-T-TTATTTTAAACTCT-
1 TTTTATATATTATTATTTTAAA-T-TA
12614080 TTTTATATATTATT
1 TTTTATATATTATT
12614094 TTTGAATTGT
Statistics
Matches: 166, Mismatches: 39, Indels: 32
0.70 0.16 0.14
Matches are distributed among these distances:
23 8 0.05
24 8 0.05
25 25 0.15
26 100 0.60
27 4 0.02
28 21 0.13
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (25 bp):
TTTTATATATTATTATTTTAAATTA
Found at i:12614190 original size:25 final size:25
Alignment explanation
Indices: 12614149--12614218 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
12614139 AAATTTCTAT
*
12614149 TTTATACGGATTATTTATTTTCAAA-TT
1 TTTATAC--ATTATTTATTTT-AAACTC
* * *
12614176 TTTATATATTGTTTATCTTAAACTC
1 TTTATACATTATTTATTTTAAACTC
12614201 TTTATACATTATTTATTT
1 TTTATACATTATTTATTT
12614219 ATTTATTTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
24 3 0.09
25 26 0.74
27 6 0.17
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTATACATTATTTATTTTAAACTC
Found at i:12614218 original size:4 final size:4
Alignment explanation
Indices: 12614209--12614249 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
12614199 TCTTTATACA
*
12614209 TTAT TTAT TTAT TTAT TT-T ATAT TTA- TTAT TTA- TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
12614250 ATTAAAGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 8 0.25
4 24 0.75
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:12614239 original size:7 final size:7
Alignment explanation
Indices: 12614208--12614249 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
12614198 CTCTTTATAC
12614208 ATTATTT
1 ATTATTT
12614215 ATTTATTT
1 A-TTATTT
12614223 A-T-TTT
1 ATTATTT
12614228 A-TATTT
1 ATTATTT
12614234 ATTATTT
1 ATTATTT
12614241 ATTATTT
1 ATTATTT
12614248 AT
1 AT
12614250 ATTAAAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 5 0.16
6 5 0.16
7 15 0.47
8 7 0.22
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTATTT
Found at i:12614241 original size:22 final size:22
Alignment explanation
Indices: 12614213--12614287 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 22
12614203 TATACATTAT
12614213 TTATTTATTTATTTTATATTTA
1 TTATTTATTTATTTTATATTTA
*
12614235 TTATTTA-TTA-TTTATATTAAA
1 TTATTTATTTATTTTATATT-TA
* * *
12614256 GTT-TTTTTTTATTTTATGTATA
1 -TTATTTATTTATTTTATATTTA
*
12614278 CTATTTATTT
1 TTATTTATTT
12614288 TAAATTTCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
20 8 0.20
21 8 0.20
22 19 0.46
23 6 0.15
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (22 bp):
TTATTTATTTATTTTATATTTA
Found at i:12614266 original size:25 final size:25
Alignment explanation
Indices: 12614208--12614268 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
12614198 CTCTTTATAC
* *
12614208 ATTATTTATTTATTTATTTTATATTT
1 ATTATTTA-TTATTTATATTAAATTT
12614234 ATTATTTATTATTTATATTAAAGTTT
1 ATTATTTATTATTTATATTAAA-TTT
*
12614260 -TTTTTTATT
1 ATTATTTATT
12614269 TTATGTATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 20 0.65
26 11 0.35
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (25 bp):
ATTATTTATTATTTATATTAAATTT
Found at i:12614348 original size:20 final size:21
Alignment explanation
Indices: 12614307--12614355 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
12614297 TTTTACATAT
* *
12614307 TATTATTTTAGACTTTTTATA
1 TATTATTTTAGAATTGTTATA
*
12614328 TGTTATTTTA-AATTGTTATA
1 TATTATTTTAGAATTGTTATA
12614348 TATTATTT
1 TATTATTT
12614356 ATTTTAAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (21 bp):
TATTATTTTAGAATTGTTATA
Found at i:12614357 original size:24 final size:24
Alignment explanation
Indices: 12614330--12614411 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 24
12614320 TTTTTATATG
12614330 TTATTTTAAATTGTTATATATTAT
1 TTATTTTAAATTGTTATATATTAT
* *
12614354 TTATTTTAAGTTG--ATTTA-T-T
1 TTATTTTAAATTGTTATATATTAT
* *
12614374 TTATTTTAAATTGTTTTGTATATTAA
1 TTATTTTAAATTG--TTATATATTAT
12614400 TTATTTTAAATT
1 TTATTTTAAATT
12614412 ATTTTACACT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
20 13 0.28
21 1 0.02
22 4 0.09
24 15 0.33
25 1 0.02
26 12 0.26
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
TTATTTTAAATTGTTATATATTAT
Found at i:12616922 original size:23 final size:23
Alignment explanation
Indices: 12616876--12616922 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
12616866 ATAATTACTT
*
12616876 TCTCTGTCTCTGGACACGCTTTC
1 TCTCTGTCTCTGGACACGCATTC
* * *
12616899 TCTCTGTCTTTTGACACTCATTC
1 TCTCTGTCTCTGGACACGCATTC
12616922 T
1 T
12616923 GTTTTTCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.11, C:0.32, G:0.13, T:0.45
Consensus pattern (23 bp):
TCTCTGTCTCTGGACACGCATTC
Found at i:12620442 original size:26 final size:26
Alignment explanation
Indices: 12620406--12620515 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
12620396 TGATACAAAT
12620406 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
12620432 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
12620458 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
12620484 TGATAATGGGTTAGGCAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
12620510 TGATAA
1 TGATAA
12620516 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:12621732 original size:21 final size:21
Alignment explanation
Indices: 12621708--12621748 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
12621698 TAAATTAATA
* * *
12621708 ATAATATATATAAGTTAAATG
1 ATAAAATAAATAAGTAAAATG
12621729 ATAAAATAAATAAGTAAAAT
1 ATAAAATAAATAAGTAAAAT
12621749 AAATGAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
ATAAAATAAATAAGTAAAATG
Found at i:12624226 original size:25 final size:26
Alignment explanation
Indices: 12624152--12624234 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
12624142 TGGTACAAAT
* *
12624152 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
12624178 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
12624204 TGATAATGGGTTA-GTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
12624229 TGATAA
1 TGATAA
12624235 GAATTTCATG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 17 0.31
26 37 0.69
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.39
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:12629980 original size:26 final size:26
Alignment explanation
Indices: 12629943--12630026 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
12629933 TGATACAAAT
* *
12629943 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
12629969 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
12629995 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
12630021 TGATAA
1 TGATAA
12630027 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:12631544 original size:26 final size:26
Alignment explanation
Indices: 12631492--12631544 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12631482 TTTACAGTTT
*
12631492 TACCCTTAGGAGATAAATTATCGAAA
1 TACCCTTAGGAGATAAATTACCGAAA
* *
12631518 TACCCTTAGG-GTTAAATTGACCTAAA
1 TACCCTTAGGAGATAAATT-ACCGAAA
12631544 T
1 T
12631545 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (26 bp):
TACCCTTAGGAGATAAATTACCGAAA
Found at i:12639358 original size:22 final size:22
Alignment explanation
Indices: 12639328--12639372 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
12639318 TTTAGTTTAA
*
12639328 TTAATATAAA-ATTTCATCCTTT
1 TTAAAATAAATATTTCAT-CTTT
*
12639350 TTAAAATAAATTTTTCATCTTT
1 TTAAAATAAATATTTCATCTTT
12639372 T
1 T
12639373 GACCTATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAAAATAAATATTTCATCTTT
Found at i:12649866 original size:90 final size:89
Alignment explanation
Indices: 12649713--12649894 Score: 310
Period size: 90 Copynumber: 2.0 Consensus size: 89
12649703 ATCTGAACTT
* *
12649713 CGAATGTTAGACGGTCAACTCCAAGCTACTATCAATCAAACTAGATATTCACTCAATAACCCTTT
1 CGAATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCC-TT
*
12649778 TTTTTCGGGCAATTTCAGTTTTCTA
65 TTTTTCAGGCAATTTCAGTTTTCTA
* *
12649803 CGAATGTTACACGGTCAACTCCAAACTATTATCGATCAAACTAGATATTCACTCAATAACCCTTT
1 CGAATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCCTTT
12649868 TTTTCAGGCAATTTCAGTTTTCTA
66 TTTTCAGGCAATTTCAGTTTTCTA
12649892 CGA
1 CGA
12649895 TTCTAAAACC
Statistics
Matches: 87, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 29 0.33
90 58 0.67
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.34
Consensus pattern (89 bp):
CGAATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCCTTT
TTTTCAGGCAATTTCAGTTTTCTA
Found at i:12655448 original size:45 final size:45
Alignment explanation
Indices: 12655399--12655614 Score: 220
Period size: 45 Copynumber: 4.8 Consensus size: 45
12655389 TTGGATTGAA
* * *
12655399 AAATGAAAAAGACCATGGTTGAAAGATACCATGGCATTATACCCG
1 AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
* * * *
12655444 AAATGAGAAATACCATAGTTGAAAGATACTATGACATTA-AACTG
1 AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
* * * * *
12655488 GAATGAATAAGACCATATTTGAAAGATACTATGAAATTATACCGG
1 AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
* * * * * *
12655533 AAATGTATAAGACCATAGTTGAAAAATACTATGGCATTAAATCCG
1 AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
* * *
12655578 ATA-CAAATAAGACCATAGTTGAAAGATACTATAACAT
1 AAATGAAA-AAGACCATAGTTGAAAGATACTATGACAT
12655615 CACTTTAGAA
Statistics
Matches: 138, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
44 37 0.27
45 101 0.73
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25
Consensus pattern (45 bp):
AAATGAAAAAGACCATAGTTGAAAGATACTATGACATTATACCCG
Found at i:12655551 original size:89 final size:89
Alignment explanation
Indices: 12655400--12655609 Score: 253
Period size: 89 Copynumber: 2.3 Consensus size: 89
12655390 TGGATTGAAA
* * * ** *
12655400 AATGAAAAAGACCATGGTTGAAAGATACCATGGCATTATACCCGAAATGAGAAATACCATAGTTG
1 AATGAATAAGACCATAGTTGAAAGATACTATGAAATTATACCCGAAATGAGAAAGACCATAGTTG
* *
12655465 AAAGATACTATGACATTAAA-CTGG
66 AAAAATACTATGACATTAAATC-CG
* * *
12655489 AATGAATAAGACCATATTTGAAAGATACTATGAAATTATACCGGAAATGTA-TAAGACCATAGTT
1 AATGAATAAGACCATAGTTGAAAGATACTATGAAATTATACCCGAAATG-AGAAAGACCATAGTT
*
12655553 GAAAAATACTATGGCATTAAATCCG
65 GAAAAATACTATGACATTAAATCCG
**
12655578 ATACAAATAAGACCATAGTTGAAAGATACTAT
1 A-ATGAATAAGACCATAGTTGAAAGATACTAT
12655610 AACATCACTT
Statistics
Matches: 103, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
89 74 0.72
90 29 0.28
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.25
Consensus pattern (89 bp):
AATGAATAAGACCATAGTTGAAAGATACTATGAAATTATACCCGAAATGAGAAAGACCATAGTTG
AAAAATACTATGACATTAAATCCG
Found at i:12660601 original size:38 final size:35
Alignment explanation
Indices: 12660531--12660605 Score: 96
Period size: 38 Copynumber: 2.1 Consensus size: 35
12660521 AGTCCAAACC
* * *
12660531 AAGCCCAAAGTATATCACCTAACCTAAAACCCTAA
1 AAGCCCAAACTATATCACCCAACCCAAAACCCTAA
12660566 AAGCCCAATACTATATCAACCCAAGCCCAAAACCCTAA
1 AAGCCCAA-ACTATATC-ACCCAA-CCCAAAACCCTAA
12660604 AA
1 AA
12660606 AACTAACAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 8 0.24
36 7 0.21
37 5 0.15
38 14 0.41
ACGTcount: A:0.47, C:0.33, G:0.05, T:0.15
Consensus pattern (35 bp):
AAGCCCAAACTATATCACCCAACCCAAAACCCTAA
Found at i:12667277 original size:23 final size:21
Alignment explanation
Indices: 12667251--12667294 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
12667241 TTACTTTAGT
12667251 AAGAAATTTACTGAATGTGAGAA
1 AAGAAATTTACT-AAT-TGAGAA
* *
12667274 AAGATATTTGCTAATTGAGAA
1 AAGAAATTTACTAATTGAGAA
12667295 GTTGTGTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (21 bp):
AAGAAATTTACTAATTGAGAA
Found at i:12671771 original size:44 final size:44
Alignment explanation
Indices: 12671566--12671914 Score: 140
Period size: 44 Copynumber: 7.7 Consensus size: 44
12671556 CTACCATAGT
* * *
12671566 GAATCTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTAC
1 GAATCTTATATCCCTGAAATTGCAGTGGAGCAAGATGAAGCTAC
* * * * *
12671610 AAATCCTATATCCAT-AAAGTTGCAATGGATC-AGATTGAAGCTAC
1 GAATCTTATATCCCTGAAA-TTGCAGTGGAGCAAGA-TGAAGCTAC
* *** *
12671654 -AATATT-TATACCTCT-AAAGTTGCAGTGG-GTTGGAATGAAACTACGATGGC
1 GAATCTTATAT-CC-CTGAAA-TTGCAGTGGAGCAAG-ATGAAGCT---A---C
* * *
12671704 GAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTAC
1 GAATCTTATATCCCTGAAATTGCAGTGGAGCAAGATGAAGCTAC
* * *
12671748 GAATCTTATATCCCTGAAATTGCAGTGGATCGAA-TTGAAGCCAC
1 GAATCTTATATCCCTGAAATTGCAGTGGAGC-AAGATGAAGCTAC
* * * * * ** **
12671792 -AATTTCTATACCCCT-AAAGTTGCAGTGGGTTGGAATAAAAATATAATGGC
1 GAATCT-TATATCCCTGAAA-TTGCAGT-GG-AGCAAGATGAAGCT-A---C
* * * * *
12671842 GAATCTTATCTCCCTGGAGTTGCAATGGAGCAATATGAAGCTAC
1 GAATCTTATATCCCTGAAATTGCAGTGGAGCAAGATGAAGCTAC
*
12671886 GAATCTTATATCCTTGAAATTGCAGTGGA
1 GAATCTTATATCCCTGAAATTGCAGTGGA
12671915 TCGGATTAAA
Statistics
Matches: 219, Mismatches: 58, Indels: 56
0.66 0.17 0.17
Matches are distributed among these distances:
42 3 0.01
43 18 0.08
44 125 0.57
45 7 0.03
46 2 0.01
47 4 0.02
48 8 0.04
49 2 0.01
50 32 0.15
51 16 0.07
52 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
GAATCTTATATCCCTGAAATTGCAGTGGAGCAAGATGAAGCTAC
Found at i:12671771 original size:138 final size:137
Alignment explanation
Indices: 12671566--12672038 Score: 689
Period size: 138 Copynumber: 3.4 Consensus size: 137
12671556 CTACCATAGT
* * *
12671566 GAATCTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCAT-AAAGT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACGAATCCTATATCCCTGAAA-T
* * *
12671630 TGCAATGGATCAGATTGAAGCTACAATATT-TATACCTCTAAAGTTGCAGTGGGTTGGAATGAAA
65 TGCAGTGGATC-GATTGAAGCCACAAT-TTCTATACCTCTAAAGTTGCAGTGGGTTGGAATAAAA
* **
12671694 CTACGATGGC
128 ATATAATGGC
* *
12671704 GAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACGAATCTTATATCCCTGAAATT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACGAATCCTATATCCCTGAAATT
*
12671769 GCAGTGGATCGAATTGAAGCCACAATTTCTATACCCCTAAAGTTGCAGTGGGTTGGAATAAAAAT
66 GCAGTGGATCG-ATTGAAGCCACAATTTCTATACCTCTAAAGTTGCAGTGGGTTGGAATAAAAAT
12671834 ATAATGGC
130 ATAATGGC
* * * * *
12671842 GAATCTTATCTCCCTGGAGTTGCAATGGAGCAATATGAAGCTACGAATCTTATATCCTTGAAATT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACGAATCCTATATCCCTGAAATT
*
12671907 GCAGTGGATCGGATTAAAGCCACAATTTCTATACCTCTAAAGTTGCAGTGGGTTGGAATAAAAAT
66 GCAGTGGATC-GATTGAAGCCACAATTTCTATACCTCTAAAGTTGCAGTGGGTTGGAATAAAAAT
*
12671972 ATAATAGC
130 ATAATGGC
* * *
12671980 GAATCTTATCTCCCTGGAGTTGCAGTGGAGCAAGATGAAGCTATGAATCCTAAATCCCT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACGAATCCTATATCCCT
12672039 AATATGGTAA
Statistics
Matches: 305, Mismatches: 26, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
137 3 0.01
138 298 0.98
139 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (137 bp):
GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACGAATCCTATATCCCTGAAATT
GCAGTGGATCGATTGAAGCCACAATTTCTATACCTCTAAAGTTGCAGTGGGTTGGAATAAAAATA
TAATGGC
Found at i:12673812 original size:13 final size:14
Alignment explanation
Indices: 12673784--12673813 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
12673774 CCTACTTTTT
12673784 TTTTATTTTGATTA
1 TTTTATTTTGATTA
12673798 TTTTATTTT-ATTA
1 TTTTATTTTGATTA
12673811 TTT
1 TTT
12673814 CAGACACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTTATTTTGATTA
Found at i:12674038 original size:9 final size:9
Alignment explanation
Indices: 12674024--12674049 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
12674014 TTAAATTTTG
12674024 ATACTATTA
1 ATACTATTA
12674033 ATACTATTA
1 ATACTATTA
12674042 ATACTATT
1 ATACTATT
12674050 TGTATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (9 bp):
ATACTATTA
Found at i:12674176 original size:22 final size:22
Alignment explanation
Indices: 12674143--12674189 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
12674133 ATTAATTGAA
12674143 TATTTTTCATTATTGTTATT-AT
1 TATTTTTCATTATTG-TATTCAT
12674165 TATTTCTT-ATTATTGTATTCAT
1 TATTT-TTCATTATTGTATTCAT
12674187 TAT
1 TAT
12674190 AGTATTGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 17 0.74
23 2 0.09
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.66
Consensus pattern (22 bp):
TATTTTTCATTATTGTATTCAT
Found at i:12674467 original size:21 final size:21
Alignment explanation
Indices: 12674441--12674482 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
12674431 ACATAGGATT
12674441 TAGGTAATAATCAAATGACGA
1 TAGGTAATAATCAAATGACGA
12674462 TAGGTAATAATCAAATGACGA
1 TAGGTAATAATCAAATGACGA
12674483 GTATTCTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.24
Consensus pattern (21 bp):
TAGGTAATAATCAAATGACGA
Found at i:12679338 original size:5 final size:5
Alignment explanation
Indices: 12679328--12679359 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
12679318 TATTATTTTT
12679328 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
12679360 TAATTTTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:12680404 original size:2 final size:2
Alignment explanation
Indices: 12680397--12680431 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
12680387 TGAACATTTC
* *
12680397 TA TA TA TA TA CA TA TA TA TA TA TA TA AA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12680432 TTTTCATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:12681458 original size:17 final size:17
Alignment explanation
Indices: 12681399--12681458 Score: 54
Period size: 16 Copynumber: 3.6 Consensus size: 17
12681389 TTAAATTATA
*
12681399 TCTTCTTTTTTTGTATT
1 TCTTCTTTTTTTCTATT
*
12681416 TCTTCTTTTTTT-TCCTT
1 TCTTCTTTTTTTCT-ATT
* *
12681433 T-TACATTTTTTCTATT
1 TCTTCTTTTTTTCTATT
12681449 TCTT-TTTTTT
1 TCTTCTTTTTT
12681459 CCCTATTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 17 0.50
17 17 0.50
ACGTcount: A:0.07, C:0.15, G:0.02, T:0.77
Consensus pattern (17 bp):
TCTTCTTTTTTTCTATT
Found at i:12683551 original size:24 final size:24
Alignment explanation
Indices: 12683518--12683564 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
12683508 TATAAAATAC
12683518 GCCACAAAGGTATTTACAGGATAT
1 GCCACAAAGGTATTTACAGGATAT
*
12683542 GCCACCAAGGTATTTACAGGATA
1 GCCACAAAGGTATTTACAGGATA
12683565 AACCGCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (24 bp):
GCCACAAAGGTATTTACAGGATAT
Found at i:12692400 original size:18 final size:18
Alignment explanation
Indices: 12692377--12692445 Score: 120
Period size: 18 Copynumber: 3.8 Consensus size: 18
12692367 CACAGCCTGG
12692377 CCACACGGGCGTGTGTAC
1 CCACACGGGCGTGTGTAC
*
12692395 CCACACAGGCGTGTGTAC
1 CCACACGGGCGTGTGTAC
*
12692413 CCACACGGGCTTGTGTAC
1 CCACACGGGCGTGTGTAC
12692431 CCACACGGGCGTGTG
1 CCACACGGGCGTGTG
12692446 AAATCTCCAC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.17
Consensus pattern (18 bp):
CCACACGGGCGTGTGTAC
Found at i:12692987 original size:20 final size:19
Alignment explanation
Indices: 12692938--12692998 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
12692928 TTAATATAAA
*
12692938 TAAATATTATTAAATTATTTT
1 TAAATATT-TTAAA-TATATT
** *
12692959 TTTATATTTTTAATAGTATT
1 TAAATATTTTAAATA-TATT
12692979 TAAATATTTTAAATATATT
1 TAAATATTTTAAATATATT
12692998 T
1 T
12692999 TATTTTATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
19 7 0.22
20 19 0.59
21 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
TAAATATTTTAAATATATT
Found at i:12693192 original size:44 final size:44
Alignment explanation
Indices: 12693141--12693231 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
12693131 AAAACATTTG
12693141 AAATAATATAATAAAATTAAAATAATTAAAAGCTAACAACTAAT
1 AAATAATATAATAAAATTAAAATAATTAAAAGCTAACAACTAAT
12693185 AAATAATATAATAAAATTAAAATAATTAAAAGCTAACAACTAAT
1 AAATAATATAATAAAATTAAAATAATTAAAAGCTAACAACTAAT
12693229 AAA
1 AAA
12693232 AAGAGAGAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.26
Consensus pattern (44 bp):
AAATAATATAATAAAATTAAAATAATTAAAAGCTAACAACTAAT
Found at i:12695285 original size:42 final size:42
Alignment explanation
Indices: 12695089--12695283 Score: 230
Period size: 42 Copynumber: 4.6 Consensus size: 42
12695079 AAACGGCCAG
*
12695089 GGACATGAGCGTGTGCCCAGGCCGTGTGAGCCACACGGGCAA
1 GGACATGGGCGTGTGCCCAGGCCGTGTGAGCCACACGGGCAA
* * * * *
12695131 GGACATGGGCGCGTGCCCAAGCTGTGTGATCCACACAGGCAA
1 GGACATGGGCGTGTGCCCAGGCCGTGTGAGCCACACGGGCAA
* ** * * *
12695173 GGACATGGGCATGTGCCCAGTTCATGTGAGACACACGGGTAA
1 GGACATGGGCGTGTGCCCAGGCCGTGTGAGCCACACGGGCAA
* *
12695215 GGACATGGGTGTGTGCCCAGGCCGTGTAAGCCACACGGGTC-A
1 GGACATGGGCGTGTGCCCAGGCCGTGTGAGCCACACGGG-CAA
* *
12695257 GGACATGGGCGTGTGTCCAGGTCGTGT
1 GGACATGGGCGTGTGCCCAGGCCGTGT
12695284 AACTCATTGT
Statistics
Matches: 124, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
42 124 1.00
ACGTcount: A:0.21, C:0.25, G:0.37, T:0.17
Consensus pattern (42 bp):
GGACATGGGCGTGTGCCCAGGCCGTGTGAGCCACACGGGCAA
Found at i:12696191 original size:5 final size:5
Alignment explanation
Indices: 12696181--12696213 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
12696171 ACATACATAC
*
12696181 TCTGT TCTGT TCTGT TCTGT T-TGT TATGT TCTG
1 TCTGT TCTGT TCTGT TCTGT TCTGT TCTGT TCTG
12696214 CTATATTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.03, C:0.15, G:0.21, T:0.61
Consensus pattern (5 bp):
TCTGT
Found at i:12699584 original size:3 final size:3
Alignment explanation
Indices: 12699576--12699612 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
12699566 TACTGATTTT
12699576 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
12699613 TATTATTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:12699617 original size:3 final size:3
Alignment explanation
Indices: 12699611--12699638 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
12699601 AATAATAATA
12699611 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
12699639 AGTTTTCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:12702557 original size:13 final size:13
Alignment explanation
Indices: 12702541--12702580 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
12702531 AGAGAACAGA
12702541 AAAGAAGAAAAAG
1 AAAGAAGAAAAAG
*
12702554 AAAGAAGAAGAAG
1 AAAGAAGAAAAAG
*
12702567 AAA-ATGAAAAAG
1 AAAGAAGAAAAAG
12702579 AA
1 AA
12702581 GAAATAGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.03
Consensus pattern (13 bp):
AAAGAAGAAAAAG
Found at i:12715832 original size:22 final size:22
Alignment explanation
Indices: 12715802--12715851 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
12715792 GAAAAGTGAA
12715802 ATTTGTAGGAATATTCTGTAAAT
1 ATTT-TAGGAATATTCTGTAAAT
* *
12715825 ATTTTAGGAATATTTTGTAGAT
1 ATTTTAGGAATATTCTGTAAAT
12715847 ATTTT
1 ATTTT
12715852 TTATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (22 bp):
ATTTTAGGAATATTCTGTAAAT
Found at i:12719606 original size:22 final size:22
Alignment explanation
Indices: 12719578--12719622 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
12719568 AGGGGGAGTG
12719578 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
12719600 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
12719622 T
1 T
12719623 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:12724401 original size:13 final size:13
Alignment explanation
Indices: 12724383--12724407 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12724373 TTAATTTAAG
12724383 AATATTTTTAAAA
1 AATATTTTTAAAA
12724396 AATATTTTTAAA
1 AATATTTTTAAA
12724408 CTAATTCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATATTTTTAAAA
Found at i:12746156 original size:50 final size:50
Alignment explanation
Indices: 12746058--12746206 Score: 135
Period size: 50 Copynumber: 3.0 Consensus size: 50
12746048 AAATATATAT
* * * *
12746058 ATACATACCTATGTAG-CCGAATTTACAA-GTTCAAT-TGGAACACCACATAA
1 ATACATACCTAT-AAGACCGAATATACAAGGTTCAATAT--ATCATCACATAA
* * ** * *
12746108 ATACTTACCTATATGACCGGTTATACCAA-GTTCATTATATCATTACATAA
1 ATACATACCTATAAGACCGAATATA-CAAGGTTCAATATATCATCACATAA
*
12746158 GTACATACCTATAAGACCGAATATACAAGGTTCAATATATCATCACATA
1 ATACATACCTATAAGACCGAATATACAAGGTTCAATATATCATCACATA
12746207 TGGCTGATTA
Statistics
Matches: 78, Mismatches: 17, Indels: 8
0.76 0.17 0.08
Matches are distributed among these distances:
49 4 0.05
50 64 0.82
51 9 0.12
52 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (50 bp):
ATACATACCTATAAGACCGAATATACAAGGTTCAATATATCATCACATAA
Found at i:12746228 original size:36 final size:36
Alignment explanation
Indices: 12746177--12746299 Score: 144
Period size: 35 Copynumber: 3.5 Consensus size: 36
12746167 TATAAGACCG
** **
12746177 AATATACAAGGTTCAATATATCATCACATATGGCTG
1 AATATACAAAATTCAATATATCATCACATATGGCCA
* **
12746213 ATTATACAAAATTCAATATATTC-TCACATATAACCA
1 AATATACAAAATTCAATATA-TCATCACATATGGCCA
*
12746249 AATATAC-AAATTCAATATATCATCACATATGGTCA
1 AATATACAAAATTCAATATATCATCACATATGGCCA
12746284 AATATAC-AAATTCAAT
1 AATATACAAAATTCAAT
12746300 TGATGTGCGT
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
34 2 0.03
35 38 0.51
36 32 0.43
37 2 0.03
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.32
Consensus pattern (36 bp):
AATATACAAAATTCAATATATCATCACATATGGCCA
Found at i:12756050 original size:39 final size:42
Alignment explanation
Indices: 12756004--12756098 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 42
12755994 CACCAGCATA
12756004 AAGCCTGCTAGGCAT-AGGTCTGA-A-TCACACACCGGCAC-
1 AAGCCTGCTAGGCATAAGGTCTGATATTCACACACCGGCACT
* * * **
12756042 AAGGCCTGCTAGACCTAAGGTCTGATATTTATTCACCGGCACT
1 AA-GCCTGCTAGGCATAAGGTCTGATATTCACACACCGGCACT
12756085 AAGCCTGCTAGGCA
1 AAGCCTGCTAGGCA
12756099 CAAAGCCCGA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
38 2 0.04
39 11 0.24
40 8 0.18
41 1 0.02
42 21 0.47
43 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.21
Consensus pattern (42 bp):
AAGCCTGCTAGGCATAAGGTCTGATATTCACACACCGGCACT
Found at i:12756522 original size:11 final size:10
Alignment explanation
Indices: 12756480--12756518 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
12756470 TGAGCACTAC
12756480 TATATTTTAT
1 TATATTTTAT
*
12756490 TATATGTT-T
1 TATATTTTAT
12756499 TATATTTTTAT
1 TATA-TTTTAT
12756510 TATATTTTA
1 TATATTTTA
12756519 ATTAATTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 5 0.20
10 15 0.60
11 5 0.20
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (10 bp):
TATATTTTAT
Found at i:12758730 original size:21 final size:21
Alignment explanation
Indices: 12758694--12758786 Score: 78
Period size: 21 Copynumber: 4.4 Consensus size: 21
12758684 TCTATTGAGC
*
12758694 TTCTGTTGAACCCTTATGGGT
1 TTCTGTTCAACCCTTATGGGT
* * * * *
12758715 TTTTGTTCAACTCTTACGAGC
1 TTCTGTTCAACCCTTATGGGT
*
12758736 TTCTGTTCAACCCTTATTGGT
1 TTCTGTTCAACCCTTATGGGT
* * * * *
12758757 TTCTGTTTAGCTCTTATGAGC
1 TTCTGTTCAACCCTTATGGGT
12758778 TTCTGTTCA
1 TTCTGTTCA
12758787 CCTTTCGGGC
Statistics
Matches: 53, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAACCCTTATGGGT
Found at i:12758785 original size:42 final size:42
Alignment explanation
Indices: 12758597--12758786 Score: 179
Period size: 42 Copynumber: 4.5 Consensus size: 42
12758587 CTTTCCATTT
* * * * * *
12758597 AGCTCTCACGAGCTTCTGTTTAACTCATATGAGTTTTC-GTTC
1 AGCTCTTATGAGCTTCTGTTCAACCCTTAT-AGGTTTCTGTTC
* * * *
12758639 AGTTC-TATTGAGCTTTTGTTTAACCCTTATAGGTTTCCGTTC
1 AGCTCTTA-TGAGCTTCTGTTCAACCCTTATAGGTTTCTGTTC
* * *
12758681 AGCTC-TATTGAGCTTCTGTTGAACCCTTATGGGTTTTTGTTC
1 AGCTCTTA-TGAGCTTCTGTTCAACCCTTATAGGTTTCTGTTC
* * * *
12758723 AACTCTTACGAGCTTCTGTTCAACCCTTATTGGTTTCTGTTT
1 AGCTCTTATGAGCTTCTGTTCAACCCTTATAGGTTTCTGTTC
12758765 AGCTCTTATGAGCTTCTGTTCA
1 AGCTCTTATGAGCTTCTGTTCA
12758787 CCTTTCGGGC
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
41 7 0.06
42 115 0.93
43 2 0.02
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (42 bp):
AGCTCTTATGAGCTTCTGTTCAACCCTTATAGGTTTCTGTTC
Found at i:12761304 original size:33 final size:33
Alignment explanation
Indices: 12761267--12761514 Score: 196
Period size: 33 Copynumber: 7.6 Consensus size: 33
12761257 TACCCAAATG
* ** *
12761267 GTACAACTTGAAAAGGTTATGTACACTTTTTGT
1 GTACCACTTGAAAAGGAAATGTACACTTTGTGT
* * *
12761300 GTA-CACTAGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGAAATGTACACTTTGTGT
* * *
12761332 ATACCA-TATGAAAAGGAAATGTATACTTTGTGA
1 GTACCACT-TGAAAAGGAAATGTACACTTTGTGT
* * * *
12761365 ATACCACTTGAAAAGGAAAGGTACACTATATGT
1 GTACCACTTGAAAAGGAAATGTACACTTTGTGT
** * *
12761398 GTA-CACTTGAAAAGGTTATGTGCACTTTGAGT
1 GTACCACTTGAAAAGGAAATGTACACTTTGTGT
* * ** *
12761430 GTACAAATTGAAAAGGGTATGTACACTTCGTGT
1 GTACCACTTGAAAAGGAAATGTACACTTTGTGT
* * * * *
12761463 GTACCACTTGAAAAGGGAATGTGCACCTCGAGT
1 GTACCACTTGAAAAGGAAATGTACACTTTGTGT
* *
12761496 GTACAACTAGAAAAGGAAA
1 GTACCACTTGAAAAGGAAA
12761515 AGTCCATCGA
Statistics
Matches: 172, Mismatches: 39, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
32 50 0.29
33 121 0.70
34 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (33 bp):
GTACCACTTGAAAAGGAAATGTACACTTTGTGT
Found at i:12761425 original size:98 final size:98
Alignment explanation
Indices: 12761272--12761514 Score: 220
Period size: 98 Copynumber: 2.5 Consensus size: 98
12761262 AAATGGTACA
** * * * * *
12761272 ACTTGAAAAGGTTATGTACACTTTTTGTGTACACTAGAAAAGGAAAGGTATACTTTGTGTATAC-
1 ACTTGAAAAGGAAAGGTACACTATATGTGTACACTAGAAAAGGAAAGGTACACTTTGAGTATACA
* * *
12761336 CATATGAAAAGGAAATGTATACTTTGTGAATACC
66 AAT-TGAAAAGGAAATGTACACTTCGTGAATACC
* ** * * *
12761370 ACTTGAAAAGGAAAGGTACACTATATGTGTACACTTGAAAAGGTTATGTGCACTTTGAGTGTACA
1 ACTTGAAAAGGAAAGGTACACTATATGTGTACACTAGAAAAGGAAAGGTACACTTTGAGTATACA
** **
12761435 AATTGAAAAGGGTATGTACACTTCGTGTGTACC
66 AATTGAAAAGGAAATGTACACTTCGTGAATACC
* * * **
12761468 ACTTGAAAAGGGAATGTGCACCTCGA-GTGTACAACTAGAAAAGGAAA
1 ACTTGAAAAGGAAAGGTACA-CTATATGTGTAC-ACTAGAAAAGGAAA
12761515 AGTCCATCGA
Statistics
Matches: 114, Mismatches: 28, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
98 98 0.86
99 16 0.14
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (98 bp):
ACTTGAAAAGGAAAGGTACACTATATGTGTACACTAGAAAAGGAAAGGTACACTTTGAGTATACA
AATTGAAAAGGAAATGTACACTTCGTGAATACC
Found at i:12761441 original size:65 final size:63
Alignment explanation
Indices: 12761267--12761514 Score: 201
Period size: 65 Copynumber: 3.8 Consensus size: 63
12761257 TACCCAAATG
* ** *
12761267 GTACAACTTGAAAAGGTTATGTACACTTTTTGTGTAC-ACTAGAAAAGGAAAGGTATACTTTGT
1 GTAC-ACTTGAAAAGGTAATGTACACTTTGAGTGTACAACTAGAAAAGGAAAGGTACACTTTGT
* * * * ** * *
12761330 GTATACCATATGAAAAGGAAATGTATACTTTGTGAATACCACTTGAAAAGGAAAGGTACACTATA
1 GTACA-C-T-TGAAAAGGTAATGTACACTTTGAGTGTACAACTAGAAAAGGAAAGGTACACT-T-
12761395 TGT
61 TGT
* * * * ** *
12761398 GTACACTTGAAAAGGTTATGTGCACTTTGAGTGTACAAATTGAAAAGGGTATGTACACTTCGTGT
1 GTACACTTGAAAAGGTAATGTACACTTTGAGTGTACAACTAGAAAAGGAAAGGTACACTT--TGT
* * * *
12761463 GTACCACTTGAAAAGGGAATGTGCACCTCGAGTGTACAACTAGAAAAGGAAA
1 GTA-CACTTGAAAAGGTAATGTACACTTTGAGTGTACAACTAGAAAAGGAAA
12761515 AGTCCATCGA
Statistics
Matches: 146, Mismatches: 31, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 2 0.01
65 69 0.47
66 61 0.42
67 2 0.01
68 7 0.05
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (63 bp):
GTACACTTGAAAAGGTAATGTACACTTTGAGTGTACAACTAGAAAAGGAAAGGTACACTTTGT
Found at i:12765064 original size:17 final size:20
Alignment explanation
Indices: 12765044--12765085 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
12765034 TATACATATT
12765044 TTGTA-AAGA-TGA-AATGC
1 TTGTACAAGAGTGAGAATGC
12765061 TTGTACAAGAGTGATGAATGC
1 TTGTACAAGAGTGA-GAATGC
12765082 TTGT
1 TTGT
12765086 TGTAATCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 5 0.24
18 4 0.19
19 3 0.14
21 9 0.43
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.33
Consensus pattern (20 bp):
TTGTACAAGAGTGAGAATGC
Found at i:12769111 original size:31 final size:31
Alignment explanation
Indices: 12769076--12769135 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
12769066 TACACCATTA
* * *
12769076 GTCACTAAATTATTGGTAAGTTTTCATTTTG
1 GTCACTAAACTATTCGAAAGTTTTCATTTTG
*
12769107 GTCACTGAACTATTCGAAAGTTTTCATTT
1 GTCACTAAACTATTCGAAAGTTTTCATTT
12769136 AAGTCATTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.45
Consensus pattern (31 bp):
GTCACTAAACTATTCGAAAGTTTTCATTTTG
Found at i:12769147 original size:31 final size:32
Alignment explanation
Indices: 12769093--12769179 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 32
12769083 AATTATTGGT
** *
12769093 AAGTTTTCATTTTGGTCACTGAACTATTC-GA
1 AAGTTTTCATTTAAGTCACTGAACTATTCAAA
*
12769124 AAGTTTTCATTTAAGTCATTGAACTATTCAAA
1 AAGTTTTCATTTAAGTCACTGAACTATTCAAA
**
12769156 AAAATTT-ATTTAAGTCACTGAACT
1 AAGTTTTCATTTAAGTCACTGAACT
12769180 GTTAAGTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 42 0.88
32 6 0.12
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (32 bp):
AAGTTTTCATTTAAGTCACTGAACTATTCAAA
Found at i:12773404 original size:49 final size:48
Alignment explanation
Indices: 12773315--12773449 Score: 164
Period size: 49 Copynumber: 2.8 Consensus size: 48
12773305 GATCTCAATC
* * * *
12773315 GAAGTACCTATACCATGGCTCGAAACCAAATTAAGGTAACTTATCCCT
1 GAAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCCCT
* * * *
12773363 -AGAGTAACTATACCATGGCCCTGTAGCCAAATCAATGTAACTCATCTCT
1 GA-AGTACCTATACCATGGCCC-GAAGCCAAATCAAGGTAACTCATCCCT
*
12773412 GAAATACCTATACCATGGCCCGAAGCCAAATCAAGGTA
1 GAAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTA
12773450 TAATTCACAC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 32 0.44
49 38 0.53
50 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (48 bp):
GAAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCCCT
Found at i:12774308 original size:42 final size:42
Alignment explanation
Indices: 12774256--12774339 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
12774246 GCAAGTCTCA
* *
12774256 AACCCTAAAACTCAATTAAAGGCTTTCTTGTTCATCAATATT
1 AACCCTAAAACTCAATCAAAGGCTTTCTTCTTCATCAATATT
* *
12774298 AACCTTAAAACTCAATCAAAGGCTTTTTTCTTCATCAATATT
1 AACCCTAAAACTCAATCAAAGGCTTTCTTCTTCATCAATATT
12774340 CGGCCAAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.37
Consensus pattern (42 bp):
AACCCTAAAACTCAATCAAAGGCTTTCTTCTTCATCAATATT
Found at i:12774954 original size:16 final size:17
Alignment explanation
Indices: 12774928--12774961 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
12774918 AGAAAAAGGG
12774928 AGAAAAGAAAAAGAGAA
1 AGAAAAGAAAAAGAGAA
*
12774945 AGAAAA-AAAAGGAGAA
1 AGAAAAGAAAAAGAGAA
12774961 A
1 A
12774962 ATTAGGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AGAAAAGAAAAAGAGAA
Found at i:12778368 original size:34 final size:34
Alignment explanation
Indices: 12778325--12778397 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
12778315 AAAACGAAGG
12778325 TGACATGTTGGTAAGTGTGGTAAATGAGAAAATT
1 TGACATGTTGGTAAGTGTGGTAAATGAGAAAATT
12778359 TGACATGTTGGTAAGTGTGGTAAATGAGAAAATT
1 TGACATGTTGGTAAGTGTGGTAAATGAGAAAATT
12778393 TGACA
1 TGACA
12778398 GGTATGTGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.32
Consensus pattern (34 bp):
TGACATGTTGGTAAGTGTGGTAAATGAGAAAATT
Found at i:12780195 original size:42 final size:43
Alignment explanation
Indices: 12780118--12780218 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
12780108 TCCCGGACGC
* * **
12780118 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAAACAG
1 GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAAACAG
* *
12780161 GGTCTTACACG-AAATCAGATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATCA-ATATCGATGCCGATGTCCCAAACAG
*
12780203 GGTCTTATACGTAAAT
1 GGTCTTACACGTAAAT
12780219 ATCAATCGAG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 32 0.65
43 17 0.35
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAAACAG
Found at i:12789192 original size:13 final size:13
Alignment explanation
Indices: 12789176--12789202 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
12789166 AGATTTAAAT
12789176 ATTAAATTTATTA
1 ATTAAATTTATTA
12789189 ATTAAATTTATTA
1 ATTAAATTTATTA
12789202 A
1 A
12789203 AAAAAAGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTAAATTTATTA
Found at i:12791442 original size:16 final size:16
Alignment explanation
Indices: 12791408--12791477 Score: 59
Period size: 16 Copynumber: 4.2 Consensus size: 16
12791398 GTAGGTTTGA
*
12791408 TTTTAATATTTAATATAG
1 TTTTAAT-TTT-ATTTAG
*
12791426 TTTTAATTTTTTTTAG
1 TTTTAATTTTATTTAG
* * *
12791442 TCTCAATTTTATTTAA
1 TTTTAATTTTATTTAG
* *
12791458 TTTTAATGTTATTTAA
1 TTTTAATTTTATTTAG
12791474 TTTT
1 TTTT
12791478 TTTTCTCTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
16 33 0.77
17 3 0.07
18 7 0.16
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (16 bp):
TTTTAATTTTATTTAG
Found at i:12792176 original size:23 final size:23
Alignment explanation
Indices: 12792148--12792191 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
12792138 ATTGTTGAGC
* *
12792148 TTGATATATCTCTTCACTTTTGT
1 TTGATATAACTCTTCAATTTTGT
12792171 TTGATATAACTCTTCAATTTT
1 TTGATATAACTCTTCAATTTT
12792192 TAAATATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.16, G:0.07, T:0.55
Consensus pattern (23 bp):
TTGATATAACTCTTCAATTTTGT
Found at i:12793097 original size:25 final size:26
Alignment explanation
Indices: 12793049--12793115 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 26
12793039 AACACCAAAC
*
12793049 ATAAATATAATTATAACCATAATA-A
1 ATAAATATAATTATAACCAAAATATA
*
12793074 ATAAATA-AATTATTAACTAAAATATA
1 ATAAATATAATTA-TAACCAAAATATA
* *
12793100 AT-ATTATAATTGTAAC
1 ATAAATATAATTATAAC
12793116 ATATGACAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
24 5 0.14
25 23 0.66
26 7 0.20
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.36
Consensus pattern (26 bp):
ATAAATATAATTATAACCAAAATATA
Found at i:12794083 original size:15 final size:16
Alignment explanation
Indices: 12794060--12794093 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
12794050 ATTGAAAATA
12794060 TTAAATTTT-AATGAT
1 TTAAATTTTCAATGAT
*
12794075 TTAATTTTTCAATGAT
1 TTAAATTTTCAATGAT
12794091 TTA
1 TTA
12794094 TCAAGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (16 bp):
TTAAATTTTCAATGAT
Found at i:12794643 original size:25 final size:24
Alignment explanation
Indices: 12794615--12794681 Score: 63
Period size: 23 Copynumber: 2.9 Consensus size: 24
12794605 ACAGTTTTAA
12794615 TTAATAATAATTTTAAATAATATT
1 TTAATAATAATTTTAAATAATATT
*
12794639 CTTAAT-A-AATATTAAA-AATATT
1 -TTAATAATAATTTTAAATAATATT
*
12794661 TATATTAAT-ATTTT-AATAATA
1 T-TAATAATAATTTTAAATAATA
12794682 CAATTTATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
21 1 0.03
22 11 0.31
23 17 0.49
24 1 0.03
25 5 0.14
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (24 bp):
TTAATAATAATTTTAAATAATATT
Found at i:12794644 original size:22 final size:22
Alignment explanation
Indices: 12794619--12794660 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
12794609 TTTTAATTAA
*
12794619 TAAT-AATTTTAAATAATATTCT
1 TAATAAATATTAAA-AATATTCT
12794641 TAATAAATATTAAAAATATT
1 TAATAAATATTAAAAATATT
12794661 TATATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATAAATATTAAAAATATTCT
Found at i:12799518 original size:16 final size:16
Alignment explanation
Indices: 12799497--12799536 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
12799487 GCTTACAGAA
12799497 AAAATAAAAAAAAAAC
1 AAAATAAAAAAAAAAC
**
12799513 AAAATAAATCAAAAAC
1 AAAATAAAAAAAAAAC
12799529 AAAA-AAAA
1 AAAATAAAA
12799537 CCAAAATAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 3 0.14
16 18 0.86
ACGTcount: A:0.85, C:0.07, G:0.00, T:0.07
Consensus pattern (16 bp):
AAAATAAAAAAAAAAC
Found at i:12799541 original size:16 final size:16
Alignment explanation
Indices: 12799507--12799542 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
12799497 AAAATAAAAA
* *
12799507 AAAAACAAAATAAATC
1 AAAAACAAAAAAAACC
12799523 AAAAACAAAAAAAACC
1 AAAAACAAAAAAAACC
12799539 AAAA
1 AAAA
12799543 TAGAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.81, C:0.14, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAACAAAAAAAACC
Found at i:12807390 original size:19 final size:19
Alignment explanation
Indices: 12807307--12807373 Score: 116
Period size: 19 Copynumber: 3.5 Consensus size: 19
12807297 AGGGAAATCT
12807307 AATGCAAATGATGCAATGC
1 AATGCAAATGATGCAATGC
*
12807326 AATGCAAATGATGCAATGT
1 AATGCAAATGATGCAATGC
*
12807345 AATGTAAATGATGCAATGC
1 AATGCAAATGATGCAATGC
12807364 AATGCAAATG
1 AATGCAAATG
12807374 CATGGGATGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 44 1.00
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (19 bp):
AATGCAAATGATGCAATGC
Found at i:12811201 original size:10 final size:10
Alignment explanation
Indices: 12811186--12811220 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
12811176 CCTTATTATA
12811186 ATATATATGT
1 ATATATATGT
12811196 ATATATATGT
1 ATATATATGT
12811206 ATATGATAATGT
1 ATAT-AT-ATGT
12811218 ATA
1 ATA
12811221 AAAAGAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.61
11 2 0.09
12 7 0.30
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (10 bp):
ATATATATGT
Found at i:12812552 original size:27 final size:27
Alignment explanation
Indices: 12812492--12812554 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 27
12812482 CTGTTATGGA
* *
12812492 TTGGGCTTTTTGGGCTAGGATATTGAGT
1 TTGGG-TTTTTGGGCTAAGATAATGAGT
*
12812520 TT-GGTTTTTGGGTCTAAG-TAATGATT
1 TTGGGTTTTTGGG-CTAAGATAATGAGT
12812546 TTGGGTTTT
1 TTGGGTTTT
12812555 AGGTTATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 16 0.53
27 12 0.40
28 2 0.07
ACGTcount: A:0.14, C:0.05, G:0.32, T:0.49
Consensus pattern (27 bp):
TTGGGTTTTTGGGCTAAGATAATGAGT
Found at i:12814356 original size:852 final size:852
Alignment explanation
Indices: 12812708--12814418 Score: 3395
Period size: 852 Copynumber: 2.0 Consensus size: 852
12812698 TTTTTAAGAA
*
12812708 ACAACTTTGGTTGTATTATCATTATCTAAAAGTAAGTTTAATTATTACATTTGAATAAAATATTT
1 ACAAATTTGGTTGTATTATCATTATCTAAAAGTAAGTTTAATTATTACATTTGAATAAAATATTT
12812773 ATAACTTATAAAAGTATAACGCCCCAAAAATTTGTTTTTCAGCTTTTGTAAATTTTACATACAAA
66 ATAACTTATAAAAGTATAACGCCCCAAAAATTTGTTTTTCAGCTTTTGTAAATTTTACATACAAA
*
12812838 TATTTATCTGCTTCAGTGGTTAAGTGTTTTGGGTGTGTGTGAGAGGTTCTAAGTTCAAGCCTTAC
131 TATTTATCTGCTTCAGTGGTTAAGTGTTTTGGGTGTGTGTGAGAGGTTCCAAGTTCAAGCCTTAC
12812903 TTGGGTTAAATTTTGGGATTTTTCTGAATAAAGCTTTATCCTTGCTAAAAGGGTTTTAATTTAAT
196 TTGGGTTAAATTTTGGGATTTTTCTGAATAAAGCTTTATCCTTGCTAAAAGGGTTTTAATTTAAT
12812968 TATTGATAAGTTTATATTAGAATAGGTTTGTTGGTCTGGTGGTTAGGAGGAGTGTTAAGTTACTA
261 TATTGATAAGTTTATATTAGAATAGGTTTGTTGGTCTGGTGGTTAGGAGGAGTGTTAAGTTACTA
12813033 GAGGTTATGTGTTCAAATTCTTACTTTGGCAAGGGTGCTATATTTTTGCTCGGTGGACTGATAGA
326 GAGGTTATGTGTTCAAATTCTTACTTTGGCAAGGGTGCTATATTTTTGCTCGGTGGACTGATAGA
12813098 GTTTCAGTCAAACGGAAAGTCTGAGTAGTGGTAGTTAGTGGAGTAGTGGAGAGATTGAGGGATTA
391 GTTTCAGTCAAACGGAAAGTCTGAGTAGTGGTAGTTAGTGGAGTAGTGGAGAGATTGAGGGATTA
12813163 TAGGGAGGTTACATGAATTACCTTCAGTTTTTCTGCTATTCTGCAGAATTTTCCGTTTGGTTTTT
456 TAGGGAGGTTACATGAATTACCTTCAGTTTTTCTGCTATTCTGCAGAATTTTCCGTTTGGTTTTT
12813228 CCCTCTTTTCCTTTTCTTCTTATTCTCTACTTCATCTTTTCGTTTAACAATGGGTTTTATACTTG
521 CCCTCTTTTCCTTTTCTTCTTATTCTCTACTTCATCTTTTCGTTTAACAATGGGTTTTATACTTG
12813293 TGCGGAATAGGTAAGTCTTCTAATTCTGTTCGTTGTAATGGGTGTTTAGTAATCAATTTAGAATC
586 TGCGGAATAGGTAAGTCTTCTAATTCTGTTCGTTGTAATGGGTGTTTAGTAATCAATTTAGAATC
12813358 TGACTATTAATACGATTGATGGTGTAAACGAACGTCGTGAGCAGTGAGTTCGTTGCTTCGGTTTA
651 TGACTATTAATACGATTGATGGTGTAAACGAACGTCGTGAGCAGTGAGTTCGTTGCTTCGGTTTA
12813423 GTAAGAATTAAAGAAGGTTCTTCGTCGGTGGTAAGTCGAGTTTCGATTGTTTCGTTGGTTGAATT
716 GTAAGAATTAAAGAAGGTTCTTCGTCGGTGGTAAGTCGAGTTTCGATTGTTTCGTTGGTTGAATT
12813488 CTGAAATCAATCGCTTAATCGGTGTTTGGCATGCTATATTCAGGTTCTGGATTGCTCGGGATTAC
781 CTGAAATCAATCGCTTAATCGGTGTTTGGCATGCTATATTCAGGTTCTGGATTGCTCGGGATTAC
12813553 GTTTGCT
846 GTTTGCT
12813560 ACAAATTTGGTTGTATTATCATTATCTAAAAGTAAGTTTAATTATTACATTTGAATAAAATATTT
1 ACAAATTTGGTTGTATTATCATTATCTAAAAGTAAGTTTAATTATTACATTTGAATAAAATATTT
12813625 ATAACTTATAAAAGTATAACGCCCCAAAAATTTGTTTTTCAGCTTTTGTAAATTTTACATACAAA
66 ATAACTTATAAAAGTATAACGCCCCAAAAATTTGTTTTTCAGCTTTTGTAAATTTTACATACAAA
12813690 TATTTATCTGCTTCAGTGGTTAAGTGTTTTGGGTGTGTGTGAGAGGTTCCAAGTTCAAGCCTTAC
131 TATTTATCTGCTTCAGTGGTTAAGTGTTTTGGGTGTGTGTGAGAGGTTCCAAGTTCAAGCCTTAC
12813755 TTGGGTTAAATTTTGGGATTTTTCTGAATAAAGCTTTATCCTTGCTAAAAGGGTTTTAATTTAAT
196 TTGGGTTAAATTTTGGGATTTTTCTGAATAAAGCTTTATCCTTGCTAAAAGGGTTTTAATTTAAT
12813820 TATTGATAAGTTTATATTAGAATAGGTTTGTTGGTCTGGTGGTTAGGAGGAGTGTTAAGTTACTA
261 TATTGATAAGTTTATATTAGAATAGGTTTGTTGGTCTGGTGGTTAGGAGGAGTGTTAAGTTACTA
12813885 GAGGTTATGTGTTCAAATTCTTACTTTGGCAAGGGTGCTATATTTTTGCTCGGTGGACTGATAGA
326 GAGGTTATGTGTTCAAATTCTTACTTTGGCAAGGGTGCTATATTTTTGCTCGGTGGACTGATAGA
*
12813950 GTTTCGGTCAAACGGAAAGTCTGAGTAGTGGTAGTTAGTGGAGTAGTGGAGAGATTGAGGGATTA
391 GTTTCAGTCAAACGGAAAGTCTGAGTAGTGGTAGTTAGTGGAGTAGTGGAGAGATTGAGGGATTA
12814015 TAGGGAGGTTACATGAATTACCTTCAGTTTTTCTGCTATTCTGCAGAATTTTCCGTTTGGTTTTT
456 TAGGGAGGTTACATGAATTACCTTCAGTTTTTCTGCTATTCTGCAGAATTTTCCGTTTGGTTTTT
12814080 CCCTCTTTTCCTTTTCTTCTTATTCTCTACTTCATCTTTTCGTTTAACAATGGGTTTTATACTTG
521 CCCTCTTTTCCTTTTCTTCTTATTCTCTACTTCATCTTTTCGTTTAACAATGGGTTTTATACTTG
12814145 TGCGGAATAGGTAAGTCTTCTAATTCTGTTCGTTGTAATGGGTGTTTAGTAATCAATTTAGAATC
586 TGCGGAATAGGTAAGTCTTCTAATTCTGTTCGTTGTAATGGGTGTTTAGTAATCAATTTAGAATC
12814210 TGACTATTAATACGATTGATGGTGTAAACGAACGTCGTGAGCAGTGAGTTCGTTGCTTCGGTTTA
651 TGACTATTAATACGATTGATGGTGTAAACGAACGTCGTGAGCAGTGAGTTCGTTGCTTCGGTTTA
12814275 GTAAGAATTAAAGAAGGTTCTTCGTCGGTGGTAAGTCGAGTTTCGATTGTTTCGTTGGTTGAATT
716 GTAAGAATTAAAGAAGGTTCTTCGTCGGTGGTAAGTCGAGTTTCGATTGTTTCGTTGGTTGAATT
12814340 CTGAAATCAATCGCTTAATCGGTGTTTGGCATGCTATATTCAGGTTCTGGATTGCTCGGGATTAC
781 CTGAAATCAATCGCTTAATCGGTGTTTGGCATGCTATATTCAGGTTCTGGATTGCTCGGGATTAC
12814405 GTTTGCT
846 GTTTGCT
12814412 ACAAATT
1 ACAAATT
12814419 CGTATCAGGT
Statistics
Matches: 856, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
852 856 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.40
Consensus pattern (852 bp):
ACAAATTTGGTTGTATTATCATTATCTAAAAGTAAGTTTAATTATTACATTTGAATAAAATATTT
ATAACTTATAAAAGTATAACGCCCCAAAAATTTGTTTTTCAGCTTTTGTAAATTTTACATACAAA
TATTTATCTGCTTCAGTGGTTAAGTGTTTTGGGTGTGTGTGAGAGGTTCCAAGTTCAAGCCTTAC
TTGGGTTAAATTTTGGGATTTTTCTGAATAAAGCTTTATCCTTGCTAAAAGGGTTTTAATTTAAT
TATTGATAAGTTTATATTAGAATAGGTTTGTTGGTCTGGTGGTTAGGAGGAGTGTTAAGTTACTA
GAGGTTATGTGTTCAAATTCTTACTTTGGCAAGGGTGCTATATTTTTGCTCGGTGGACTGATAGA
GTTTCAGTCAAACGGAAAGTCTGAGTAGTGGTAGTTAGTGGAGTAGTGGAGAGATTGAGGGATTA
TAGGGAGGTTACATGAATTACCTTCAGTTTTTCTGCTATTCTGCAGAATTTTCCGTTTGGTTTTT
CCCTCTTTTCCTTTTCTTCTTATTCTCTACTTCATCTTTTCGTTTAACAATGGGTTTTATACTTG
TGCGGAATAGGTAAGTCTTCTAATTCTGTTCGTTGTAATGGGTGTTTAGTAATCAATTTAGAATC
TGACTATTAATACGATTGATGGTGTAAACGAACGTCGTGAGCAGTGAGTTCGTTGCTTCGGTTTA
GTAAGAATTAAAGAAGGTTCTTCGTCGGTGGTAAGTCGAGTTTCGATTGTTTCGTTGGTTGAATT
CTGAAATCAATCGCTTAATCGGTGTTTGGCATGCTATATTCAGGTTCTGGATTGCTCGGGATTAC
GTTTGCT
Found at i:12819522 original size:3 final size:3
Alignment explanation
Indices: 12819514--12819553 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
12819504 TGTTAAAGGT
12819514 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
12819554 AGGTAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:12820750 original size:22 final size:22
Alignment explanation
Indices: 12820722--12820765 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
12820712 TTAATTTGTA
12820722 GATACCCTTTAATCTTACCAGT
1 GATACCCTTTAATCTTACCAGT
12820744 GATACCCTTTAATCTTACCAGT
1 GATACCCTTTAATCTTACCAGT
12820766 TGGTGTACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.36
Consensus pattern (22 bp):
GATACCCTTTAATCTTACCAGT
Found at i:12823071 original size:25 final size:25
Alignment explanation
Indices: 12823031--12823124 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
12823021 CTCTTTTAAT
*
12823031 AACTGGGG-AAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
12823055 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
12823080 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
12823105 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
12823125 GCACTTCTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 7 0.11
25 56 0.89
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:12823074 original size:24 final size:24
Alignment explanation
Indices: 12823018--12823125 Score: 121
Period size: 25 Copynumber: 4.4 Consensus size: 24
12823008 CTGGAGGCCT
*
12823018 AGCCTCTTTTAAT-AACTGGGG-AA
1 AGCC-CTTTTGATAAACTGGGGCAA
*
12823041 AGCCCTTTTTGATAAACTAGGGCAA
1 AGCCC-TTTTGATAAACTGGGGCAA
*
12823066 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTT-GATAAACTGGGGCAA
* *
12823091 AGCCCTTTTTGGTAAACTGGGGCAT
1 AGCCC-TTTTGATAAACTGGGGCAA
12823116 AGCCCTTTTG
1 AGCCCTTTTG
12823126 CACTTCTTCC
Statistics
Matches: 75, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
22 1 0.01
23 10 0.13
24 16 0.21
25 44 0.59
26 4 0.05
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:12829698 original size:26 final size:24
Alignment explanation
Indices: 12829668--12829716 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
12829658 AATAAAAAAT
*
12829668 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
12829694 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
12829717 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:12830368 original size:41 final size:43
Alignment explanation
Indices: 12830323--12830436 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
12830313 TGTGTTATGG
* *
12830323 TGTAAGACCACGTCTAGGACATTGGCATC-A-ATTTGATTTCA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
*
12830364 TGTAAGACC-CGATCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCACG-TCTGGGACATTGGCATCGATATTTGATTACA
* *
12830407 TGTAACACCACGTCTGGGACATTGGTATCG
1 TGTAAGACCACGTCTGGGACATTGGCATCG
12830437 TAAGAGATTT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
40 2 0.03
41 24 0.38
42 1 0.02
43 34 0.54
44 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
Found at i:12846374 original size:23 final size:23
Alignment explanation
Indices: 12846356--12846409 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
12846346 GGTATACACG
12846356 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* **
12846379 TACATAATAATAATA-ATGGTAA
1 TACATAATAAAAATATATACTAA
12846401 TAC-TAATAA
1 TACATAATAA
12846410 TACTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 14 0.50
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:12846390 original size:3 final size:3
Alignment explanation
Indices: 12846359--12846429 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
12846349 ATACACGTAC
* * * * *
12846359 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATG GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
12846406 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
12846430 CAAGGATATT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:12846920 original size:18 final size:18
Alignment explanation
Indices: 12846893--12846930 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
12846883 GAAAAAAAAA
*
12846893 AGAAGAGAGAGGGAAGAG
1 AGAAGAGAGAGAGAAGAG
*
12846911 AGAAGGGAGAGAGAAGAG
1 AGAAGAGAGAGAGAAGAG
12846929 AG
1 AG
12846931 GGGAATCCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (18 bp):
AGAAGAGAGAGAGAAGAG
Found at i:12846925 original size:11 final size:12
Alignment explanation
Indices: 12846894--12846926 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
12846884 AAAAAAAAAA
12846894 GAAGAGAG-AGG
1 GAAGAGAGAAGG
12846905 GAAGAGAGAAGG
1 GAAGAGAGAAGG
12846917 G-AGAGAGAAG
1 GAAGAGAGAAG
12846927 AGAGGGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:12848506 original size:129 final size:129
Alignment explanation
Indices: 12848287--12848527 Score: 360
Period size: 129 Copynumber: 1.9 Consensus size: 129
12848277 TCAACTCATT
* ** * *
12848287 TCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGTT
1 TCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCT
**
12848352 CAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACC
66 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTAAAAGGTTCAACCCACC
* * *
12848415 TCTCGCAATATGAGTTGATTTTTTTTGA-AAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGG
1 TCTCGCAATATGAGTTGA-TTTTTTTGACAA-CAGAAATTGAAAATACCTCAGCGTGCCCCGAGG
12848479 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATT
64 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATT
12848528 GAAATTACCT
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
128 20 0.20
129 63 0.63
130 17 0.17
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (129 bp):
TCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTAAAAGGTTCAACCCACC
Found at i:12848865 original size:72 final size:71
Alignment explanation
Indices: 12848602--12849249 Score: 832
Period size: 72 Copynumber: 8.9 Consensus size: 71
12848592 ACATAAATTG
* * * * *
12848602 AACAGGAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
12848667 TTTCTTGAA
65 -TT-TTGAA
* ** *
12848676 AAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
12848741 TTTTTTTTGAC
65 ----TTTTGAA
*
12848752 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
12848817 TTTGAAA
66 TTTG-AA
* **
12848824 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
12848889 TTTTTGAC
65 -TTTTGAA
*
12848897 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
12848962 TTTGAAA
66 TTTG-AA
* **
12848969 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
12849034 TTTTTTGAC
65 --TTTTGAA
*
12849043 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
12849108 TTTGAAA
66 TTTG-AA
* ** * *
12849115 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG-TCAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
12849179 TTT-AA
66 TTTGAA
* * * * * * * *
12849184 AACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
12849249 T
66 T
12849250 AAAAATACCT
Statistics
Matches: 516, Mismatches: 46, Indels: 28
0.87 0.08 0.05
Matches are distributed among these distances:
69 54 0.10
70 3 0.01
71 20 0.04
72 179 0.35
73 61 0.12
74 68 0.13
75 121 0.23
76 6 0.01
77 4 0.01
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (71 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGAA
Found at i:12848953 original size:145 final size:146
Alignment explanation
Indices: 12848602--12849249 Score: 984
Period size: 145 Copynumber: 4.5 Consensus size: 146
12848592 ACATAAATTG
* * * * * *
12848602 AACAGGAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-
* * * ** * **
12848667 TTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
65 -TT-TTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAAT
12848732 ATGAGTTGATTTTTTTTGAC
128 ATGAGTTGA-TTTTTTTGAC
12848752 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
12848817 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
12848882 AGTTGA-TTTTTTGAC
131 AGTTGATTTTTTTGAC
12848897 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
12848962 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
12849027 AGTTGATTTTTTTGAC
131 AGTTGATTTTTTTGAC
12849043 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
12849108 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
* * *
12849173 AG-TCA---ATTT-AA
131 AGTTGATTTTTTTGAC
* * * * * * * * *
12849184 AACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
12849249 T
66 T
12849250 AAAAATACCT
Statistics
Matches: 471, Mismatches: 26, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
141 58 0.12
142 3 0.01
145 147 0.31
146 141 0.30
147 62 0.13
148 2 0.00
150 58 0.12
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (146 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
TTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
AGTTGATTTTTTTGAC
Found at i:12849279 original size:56 final size:56
Alignment explanation
Indices: 12849193--12849305 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
12849183 AAACATAAAC
**
12849193 TAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGAT
1 TAAAAATACCTCAACGTGCCCCGAGGCTCAACTCATC-TCTCGCAATATGAGTTGAT
**
12849249 TAAAAATACCTCAACGTGCCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 TAAAAATACCTCAACGTGCCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
12849305 T
1 T
12849306 TTCCTTGGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 51 0.98
57 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (56 bp):
TAAAAATACCTCAACGTGCCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
Found at i:12862923 original size:34 final size:34
Alignment explanation
Indices: 12862876--12862946 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
12862866 ACAAAGATAT
12862876 GATTAAAAACAATACTATCATATATTAGTTATCA
1 GATTAAAAACAATACTATCATATATTAGTTATCA
*
12862910 GATTAAAACCAATACTATCATATATTAGTTATCA
1 GATTAAAAACAATACTATCATATATTAGTTATCA
12862944 GAT
1 GAT
12862947 CAATTGTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (34 bp):
GATTAAAAACAATACTATCATATATTAGTTATCA
Found at i:12869123 original size:8 final size:8
Alignment explanation
Indices: 12869103--12869139 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
12869093 CTAAATTTAT
12869103 ATTTTTCA
1 ATTTTTCA
12869111 A-TTTTCA
1 ATTTTTCA
12869118 ATTTTTCA
1 ATTTTTCA
12869126 ATTTTTCA
1 ATTTTTCA
12869134 ATTTTT
1 ATTTTT
12869140 TAAATTAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.25
8 21 0.75
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.65
Consensus pattern (8 bp):
ATTTTTCA
Found at i:12869153 original size:23 final size:24
Alignment explanation
Indices: 12869127--12869178 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
12869117 AATTTTTCAA
* *
12869127 TTTTTCAATTTTTTAA-ATTAAAC
1 TTTTTCAATTTCTAAACATTAAAC
*
12869150 TTTTTCAATTTCTAAACATTAAGC
1 TTTTTCAATTTCTAAACATTAAAC
12869174 TTTTT
1 TTTTT
12869179 TTAGCTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.56
Consensus pattern (24 bp):
TTTTTCAATTTCTAAACATTAAAC
Found at i:12869222 original size:16 final size:16
Alignment explanation
Indices: 12869201--12869233 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
12869191 TTTTTCCTAT
*
12869201 TTTTTGAATTTTTAAA
1 TTTTTGAATTTTGAAA
12869217 TTTTTGAATTTTGAAA
1 TTTTTGAATTTTGAAA
12869233 T
1 T
12869234 AAAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (16 bp):
TTTTTGAATTTTGAAA
Found at i:12869316 original size:28 final size:28
Alignment explanation
Indices: 12869266--12869322 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
12869256 TTTGTACAAT
* *
12869266 ATATATTTTTTAATTTTCTAAAATTTAA
1 ATATATTTTTTAATTTTATAAAAATTAA
*
12869294 ATAT-TTTTTTATTTTTATAAAAAATTAA
1 ATATATTTTTTAATTTTAT-AAAAATTAA
12869322 A
1 A
12869323 ATTATATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (28 bp):
ATATATTTTTTAATTTTATAAAAATTAA
Found at i:12877958 original size:176 final size:176
Alignment explanation
Indices: 12877664--12878019 Score: 667
Period size: 176 Copynumber: 2.0 Consensus size: 176
12877654 CTCTTCACTT
*
12877664 TATAACTCTTTTGGCTTAATTTTTTTCGAAAAAATGAGCTCCACAAAATTTGACTAAATTGAAGG
1 TATAACTCTTTTGGCTTAATTTTTTTCGAAAAAATGAGATCCACAAAATTTGACTAAATTGAAGG
*
12877729 TTTAAACATGTAATTATATCATATTAGGGAAGATTAGGATTGAAATTAAGGTTTAGAAATAAAAT
66 TTTAAACATGTAATTATATCATATTAGGGAAGATTAGGATCGAAATTAAGGTTTAGAAATAAAAT
12877794 TTGAGTGGTGAAATCATATTTTCGACAAAACTAGTTAAGTTTTCGG
131 TTGAGTGGTGAAATCATATTTTCGACAAAACTAGTTAAGTTTTCGG
*
12877840 TATAACTCTTTTGGCTTAATTTTTTTCGAAGAAATGAGATCCACAAAATTTGACTAAATTGAAGG
1 TATAACTCTTTTGGCTTAATTTTTTTCGAAAAAATGAGATCCACAAAATTTGACTAAATTGAAGG
12877905 TTTAAACATGTAATTATATCATATTAGGGAAGATTAGGATCGAAATTAAGGTTTAGAAATAAAAT
66 TTTAAACATGTAATTATATCATATTAGGGAAGATTAGGATCGAAATTAAGGTTTAGAAATAAAAT
* *
12877970 TTGAGTGGTGAAATCGTATTTTCGACAAAACTGGTTAAGTTTTCGG
131 TTGAGTGGTGAAATCATATTTTCGACAAAACTAGTTAAGTTTTCGG
12878016 TATA
1 TATA
12878020 GAGATCTAGA
Statistics
Matches: 175, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
176 175 1.00
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (176 bp):
TATAACTCTTTTGGCTTAATTTTTTTCGAAAAAATGAGATCCACAAAATTTGACTAAATTGAAGG
TTTAAACATGTAATTATATCATATTAGGGAAGATTAGGATCGAAATTAAGGTTTAGAAATAAAAT
TTGAGTGGTGAAATCATATTTTCGACAAAACTAGTTAAGTTTTCGG
Found at i:12880357 original size:40 final size:39
Alignment explanation
Indices: 12880312--12880443 Score: 133
Period size: 40 Copynumber: 3.4 Consensus size: 39
12880302 AGTTTGGCAT
* *
12880312 CTAGTGCCTCATCGGATAATTCGAAGTAATAGATTAACAC
1 CTAGTGCCTCATCGGATAATCCAAAGTAATA-ATTAACAC
* * * *
12880352 CTAGTGTCTCATCGGCTAAACCAAAGT-A-AATTAGCAC
1 CTAGTGCCTCATCGGATAATCCAAAGTAATAATTAACAC
* * *
12880389 CTAGTGCCTCATCGAATTAATCCAAAGTAGTAAATTGACAC
1 CTAGTGCCTCATCGGA-TAATCCAAAGTAAT-AATTAACAC
*
12880430 CTAGTGTCTCATCG
1 CTAGTGCCTCATCG
12880444 CCTCGAAGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 20 0.27
38 11 0.15
39 1 0.01
40 22 0.30
41 20 0.27
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (39 bp):
CTAGTGCCTCATCGGATAATCCAAAGTAATAATTAACAC
Found at i:12880431 original size:41 final size:37
Alignment explanation
Indices: 12880312--12880443 Score: 106
Period size: 41 Copynumber: 3.4 Consensus size: 37
12880302 AGTTTGGCAT
* * *
12880312 CTAGTGCCTCATCGGATAATTCGAAGTAATAGATTAACAC
1 CTAGTGCCTCATC-GATAA-TCCAAGTAGTAAATT-ACAC
* * *
12880352 CTAGTGTCTCATCGGCTAAACCAA--AGTAAATTAGCAC
1 CTAGTGCCTCATC-GATAATCCAAGTAGTAAATTA-CAC
12880389 CTAGTGCCTCATCGAATTAATCCAAAGTAGTAAATTGACAC
1 CTAGTGCCTCATCG-A-TAATCC-AAGTAGTAAATT-ACAC
*
12880430 CTAGTGTCTCATCG
1 CTAGTGCCTCATCG
12880444 CCTCGAAGTC
Statistics
Matches: 75, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
36 2 0.03
37 21 0.28
38 5 0.07
39 5 0.07
40 17 0.23
41 24 0.32
42 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (37 bp):
CTAGTGCCTCATCGATAATCCAAGTAGTAAATTACAC
Found at i:12890258 original size:13 final size:13
Alignment explanation
Indices: 12890240--12890266 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
12890230 GCTATCTCCA
12890240 TGATGCTGCTAGT
1 TGATGCTGCTAGT
12890253 TGATGCTGCTAGT
1 TGATGCTGCTAGT
12890266 T
1 T
12890267 CTTACAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.41
Consensus pattern (13 bp):
TGATGCTGCTAGT
Found at i:12892270 original size:24 final size:26
Alignment explanation
Indices: 12892195--12892278 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 26
12892185 AAATTTAAAT
12892195 AATTTT-TAT-TTATTATAACATTTTTTCA
1 AATTTTATATATTATTATAA-A--TTTT-A
* *
12892223 ATTTTTATATATTATTTTAAATTTTA
1 AATTTTATATATTATTATAAATTTTA
*
12892249 AATTTTATA-ATTA-TATATATTTTA
1 AATTTTATATATTATTATAAATTTTA
*
12892273 CATTTT
1 AATTTT
12892279 TAGTCAATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
24 14 0.29
25 4 0.08
26 9 0.19
27 4 0.08
28 5 0.10
29 4 0.08
30 8 0.17
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (26 bp):
AATTTTATATATTATTATAAATTTTA
Found at i:12897859 original size:31 final size:31
Alignment explanation
Indices: 12897824--12897889 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
12897814 AAAGAGGCGA
12897824 CACCCAATGGTCACGCCTTAGGCACAAGCAG
1 CACCCAATGGTCACGCCTTAGGCACAAGCAG
* * * *
12897855 CACCCACTGGTCACGCCTTTGGCAGAGGCAG
1 CACCCAATGGTCACGCCTTAGGCACAAGCAG
12897886 CACC
1 CACC
12897890 ATCAGTCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.14
Consensus pattern (31 bp):
CACCCAATGGTCACGCCTTAGGCACAAGCAG
Found at i:12898335 original size:31 final size:31
Alignment explanation
Indices: 12898297--12898358 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
12898287 TAGTAGTGCT
* *
12898297 GCCAAAGTGATAGGCGGCACCACTTTGTCCA
1 GCCAAAGTGATAGGCGACACCACTTAGTCCA
*
12898328 GCCAAAGTGATAGGCGACACTACTTAGTCCA
1 GCCAAAGTGATAGGCGACACCACTTAGTCCA
12898359 TTCTGGTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.19
Consensus pattern (31 bp):
GCCAAAGTGATAGGCGACACCACTTAGTCCA
Found at i:12900885 original size:21 final size:21
Alignment explanation
Indices: 12900816--12900886 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
12900806 AAATTTAGAA
* *
12900816 AATTA-TGGTTGATTTTGATT
1 AATTATTGATTGACTTTGATT
* * * *
12900836 CATTATTGATTGGCATTGGTT
1 AATTATTGATTGACTTTGATT
* *
12900857 GATGATTGATTGACTTTGATT
1 AATTATTGATTGACTTTGATT
12900878 AATTATTGA
1 AATTATTGA
12900887 CGGATGTTGA
Statistics
Matches: 37, Mismatches: 13, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
20 4 0.11
21 33 0.89
ACGTcount: A:0.25, C:0.04, G:0.21, T:0.49
Consensus pattern (21 bp):
AATTATTGATTGACTTTGATT
Found at i:12901124 original size:22 final size:20
Alignment explanation
Indices: 12901084--12901125 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
12901074 TTTCTTTTGG
*
12901084 ATTTTTTTGAATTTTTAGAA
1 ATTTTATTGAATTTTTAGAA
12901104 ATTTTATTGATATATTTTAGAA
1 ATTTTATTGA-AT-TTTTAGAA
12901126 GTTCCTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (20 bp):
ATTTTATTGAATTTTTAGAA
Done.