Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 45 of 316
Found at i:12905158 original size:24 final size:24
Alignment explanation
Indices: 12905130--12905214 Score: 127
Period size: 24 Copynumber: 3.5 Consensus size: 24
12905120 CCCTCCTCGT
12905130 CCATTCCCTCCTCACCCACCGCGA
1 CCATTCCCTCCTCACCCACCGCGA
*
12905154 CCATTCCCTCCTCACCCGCCGCGA
1 CCATTCCCTCCTCACCCACCGCGA
* *
12905178 CCGA-TCCCTCCTCATCCACCACGA
1 CC-ATTCCCTCCTCACCCACCGCGA
12905202 CCATTCCCTCCTC
1 CCATTCCCTCCTC
12905215 CTCATCCTCA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
23 1 0.02
24 53 0.96
25 1 0.02
ACGTcount: A:0.15, C:0.58, G:0.08, T:0.19
Consensus pattern (24 bp):
CCATTCCCTCCTCACCCACCGCGA
Found at i:12907605 original size:18 final size:18
Alignment explanation
Indices: 12907563--12907606 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
12907553 CCTTTTTTTC
12907563 TTTATT-TTTATTTTAGT
1 TTTATTATTTATTTTAGT
*
12907580 TTTTTTATTTATTTTA-T
1 TTTATTATTTATTTTAGT
12907597 TCTTATTATT
1 T-TTATTATT
12907607 ACTATTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTATTATTTATTTTAGT
Found at i:12908364 original size:34 final size:34
Alignment explanation
Indices: 12908325--12908389 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
12908315 ATTTAAAGGC
12908325 AAACTTGTTCTCGAATGTTCGAATGTCGCATCCT
1 AAACTTGTTCTCGAATGTTCGAATGTCGCATCCT
* *
12908359 AAACTTGTTCTCGAATTTTTGAATGTCGCAT
1 AAACTTGTTCTCGAATGTTCGAATGTCGCAT
12908390 TTCGTTATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (34 bp):
AAACTTGTTCTCGAATGTTCGAATGTCGCATCCT
Found at i:12908665 original size:153 final size:154
Alignment explanation
Indices: 12908381--12908683 Score: 536
Period size: 153 Copynumber: 2.0 Consensus size: 154
12908371 GAATTTTTGA
*
12908381 ATGTCGCATTTCGTTATCTCAGGACGAATAGGCCTTTGGTGTTCGTTTCAACTTAATTCAAGCTT
1 ATGTCGCATTTCGTTATCTCAGGACGAATAGGCCTTTGATGTTCGTTTCAACTTAATTCAAGCTT
**
12908446 TTTTTAAAAAAAAAAGCTTTAATAAAAAGGGATCGTATTTTAAATCTTTTCAAAATTTTAACTTT
66 TTTTTAAAAAAAAAAGCTTTAATAAAAAGGGATCGTATTTTAAATCTTTTCAAAATTGCAACTTT
12908511 CGCCATTAAGACATTAATTACGGG
131 CGCCATTAAGACATTAATTACGGG
* * * *
12908535 ATGTTGCATTTCGTTATCTCAGGACGAGTGGGCCTTTGATGTTTGTTTCAACTTAATTCAAGCTT
1 ATGTCGCATTTCGTTATCTCAGGACGAATAGGCCTTTGATGTTCGTTTCAACTTAATTCAAGCTT
12908600 TTTTT-AAAAAAAAAGCTTTAATAAAAAGGGATCGTATTTTAAATCTTTTCAAAATTGCAACTTT
66 TTTTTAAAAAAAAAAGCTTTAATAAAAAGGGATCGTATTTTAAATCTTTTCAAAATTGCAACTTT
12908664 CGCCATTAAGACATTAATTA
131 CGCCATTAAGACATTAATTA
12908684 ATTAATTGGA
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
153 77 0.54
154 65 0.46
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (154 bp):
ATGTCGCATTTCGTTATCTCAGGACGAATAGGCCTTTGATGTTCGTTTCAACTTAATTCAAGCTT
TTTTTAAAAAAAAAAGCTTTAATAAAAAGGGATCGTATTTTAAATCTTTTCAAAATTGCAACTTT
CGCCATTAAGACATTAATTACGGG
Found at i:12915393 original size:37 final size:37
Alignment explanation
Indices: 12915325--12915396 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
12915315 TCTGTGCAAG
*
12915325 TATTCTTTTATTATTTTCATTCTATTCATAACCAAAA
1 TATTCTTTTATTATTTCCATTCTATTCATAACCAAAA
* * *
12915362 TATTCTTTTATTCTTTCCATTTTATTTATAACCAA
1 TATTCTTTTATTATTTCCATTCTATTCATAACCAA
12915397 TCATATGGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (37 bp):
TATTCTTTTATTATTTCCATTCTATTCATAACCAAAA
Found at i:12920017 original size:44 final size:45
Alignment explanation
Indices: 12919951--12920287 Score: 183
Period size: 44 Copynumber: 7.5 Consensus size: 45
12919941 TACCATGGCG
* *
12919951 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATAGAAACCA-CT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATAGAAAACAGCA
* * * * * *
12919995 AGTCTTATCTCCCTGAAATTGCA-AAGGAGCAGATTGAAAATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTA-GAGTAGATAGAAAACAGCA
* * *
12920040 AATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAACTATAAACAACA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGA-T---A-GA-AAACAGCA
* * * * * * * **
12920091 AACCCTATCTCCCTAAAGTTACAGTAGAGCAGGTTGAAATTA-CA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATAGAAAACAGCA
* * * *
12920135 AATCTAATTTCCCTGAAGTT---GTGGAGTAGATAGAAACCA-CA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATAGAAAACAGCA
* * * *
12920176 AATCTTATCTCCAT-AATGTTGCAATGGAGTAGATTGAAGAA-AGCA
1 AATCTTATCTCCCTGAA-GTTGCAGTAGAGTAGATAGAA-AACAGCA
* * * * * *
12920221 AGTCTTATCTCCTTGAAGTT-CAGTGGAGTAGACTA-AAGATAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGA-TAGAAAACAGCA
* *
12920265 AATATTATTTCCCTGAAGTTGCA
1 AATCTTATCTCCCTGAAGTTGCA
12920288 ATGGAACAGA
Statistics
Matches: 219, Mismatches: 55, Indels: 37
0.70 0.18 0.12
Matches are distributed among these distances:
40 2 0.01
41 29 0.13
43 2 0.01
44 96 0.44
45 51 0.23
46 5 0.02
50 2 0.01
51 32 0.15
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (45 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATAGAAAACAGCA
Found at i:12922100 original size:18 final size:19
Alignment explanation
Indices: 12922059--12922101 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
12922049 CTTTTTTTCT
12922059 TTATT-TTTATTTTAGTTA
1 TTATTATTTATTTTAGTTA
*
12922077 TT-TTATTTATTTTA-TTC
1 TTATTATTTATTTTAGTTA
12922094 TTATTATT
1 TTATTATT
12922102 ACTATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (19 bp):
TTATTATTTATTTTAGTTA
Found at i:12922107 original size:24 final size:24
Alignment explanation
Indices: 12922058--12922109 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
12922048 CCTTTTTTTC
*
12922058 TTTATTTTTATTTTAGTTATTTTA
1 TTTATTTTTATTTTAGTTATTCTA
12922082 TTTA-TTTTATTCTTA-TTATTACTA
1 TTTATTTTTATT-TTAGTTATT-CTA
12922106 TTTA
1 TTTA
12922110 AAATTGTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (24 bp):
TTTATTTTTATTTTAGTTATTCTA
Found at i:12922270 original size:13 final size:14
Alignment explanation
Indices: 12922252--12922293 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
12922242 ATTTTCAATA
12922252 TTTTATA-AATTAT
1 TTTTATATAATTAT
*
12922265 TTTTATATATTTA-
1 TTTTATATAATTAT
*
12922278 TTTTATATATTTAT
1 TTTTATATAATTAT
12922292 TT
1 TT
12922294 AATTACTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTATATAATTAT
Found at i:12922286 original size:15 final size:14
Alignment explanation
Indices: 12922250--12922293 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 14
12922240 TTATTTTCAA
12922250 TATTTTATA-A-AT
1 TATTTTATATATAT
12922262 TATTTT-TATATATT
1 TATTTTATATATA-T
12922276 TATTTTATATAT-T
1 TATTTTATATATAT
12922289 TATTT
1 TATTT
12922294 AATTACTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
11 2 0.07
12 7 0.25
13 7 0.25
14 7 0.25
15 5 0.18
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTTTATATATAT
Found at i:12924669 original size:24 final size:25
Alignment explanation
Indices: 12924622--12924677 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
12924612 TATTCAATAC
** *
12924622 AATATATTATTTATATATTTTTTAA
1 AATATATTAAATATATATTGTTTAA
12924647 AATATATTAAATAT-TATTGTTTAA
1 AATATATTAAATATATATTGTTTAA
*
12924671 TATATAT
1 AATATAT
12924678 ATATGCTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (25 bp):
AATATATTAAATATATATTGTTTAA
Found at i:12928729 original size:18 final size:18
Alignment explanation
Indices: 12928706--12928761 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
12928696 CCACCACCAA
12928706 CTCCACTAGCCACAATTG
1 CTCCACTAGCCACAATTG
*
12928724 CTCCACCA--C-CAA---
1 CTCCACTAGCCACAATTG
*
12928736 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACAATTG
12928754 CTCCACTA
1 CTCCACTA
12928762 CCTACTCCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 12
0.66 0.07 0.27
Matches are distributed among these distances:
12 7 0.24
14 1 0.03
15 5 0.17
16 1 0.03
18 15 0.52
ACGTcount: A:0.27, C:0.46, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACAATTG
Found at i:12928732 original size:30 final size:30
Alignment explanation
Indices: 12928696--12928794 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
12928686 CTAGCATTTG
*
12928696 CCACCACCAACTCCACTAGCCACAATTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
12928726 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
12928756 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
12928786 CCACCACCA
1 CCACCACCA
12928795 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.27, C:0.49, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:12928789 original size:18 final size:18
Alignment explanation
Indices: 12928736--12928789 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
12928726 CCACCACCAA
12928736 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
12928754 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
12928766 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
12928784 CTCCAC
1 CTCCAC
12928790 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:12936323 original size:14 final size:13
Alignment explanation
Indices: 12936304--12936339 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
12936294 CGCTGAGGTA
12936304 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
12936317 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
12936331 TTTTCAAAA
1 TTTTCAAAA
12936340 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:12936601 original size:75 final size:75
Alignment explanation
Indices: 12936502--12936809 Score: 365
Period size: 75 Copynumber: 4.0 Consensus size: 75
12936492 GTTTTTAAAG
*
12936502 AATCAACTCATATTGCGA-ATGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTT-AATTTCA
1 AATCAACTCATATTGCGAGA-GGTGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTTCT
12936565 ATTTTTCAAAAA
64 ATTTTTCAAAAA
*
12936577 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTAT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTAT
12936642 CTTTCAAAAAAAAATCAAAAA
66 -TTT----------TCAAAAA
* *
12936663 AATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACGCTGAGGCATTTTCAATTTCTAT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTAT
*
12936726 TTTTCAAAAG
66 TTTTCAAAAA
* *
12936736 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCTCACGTGCTGAGGTATTTTCAATTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACAC--GCTGAGGTATTTTCAATTTC
*
12936800 TACTTTTCAA
63 TATTTTTCAA
12936810 TTTCTATTTT
Statistics
Matches: 205, Mismatches: 10, Indels: 34
0.82 0.04 0.14
Matches are distributed among these distances:
72 2 0.01
73 39 0.19
74 5 0.02
75 57 0.28
76 4 0.02
77 28 0.14
83 3 0.01
84 23 0.11
86 44 0.21
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTAT
TTTTCAAAAA
Found at i:12936742 original size:73 final size:74
Alignment explanation
Indices: 12936656--12936809 Score: 213
Period size: 73 Copynumber: 2.1 Consensus size: 74
12936646 CAAAAAAAAA
*
12936656 TCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG-AC-GCTGAGGCATTTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AAGCACGGCTGAGGCATTTTCAA
*
12936719 TTTCTATTTT
65 TTTCTACTTT
* * *
12936729 TCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCTCACGTGCTGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAG--CACG-GCTGAGGCATTTTC
12936794 AATTTCTACTTT
63 AATTTCTACTTT
12936806 TCAA
1 TCAA
12936810 TTTCTATTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
72 2 0.03
73 39 0.55
75 2 0.03
77 28 0.39
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (74 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAGCACGGCTGAGGCATTTTCAAT
TTCTACTTT
Found at i:12936808 original size:14 final size:14
Alignment explanation
Indices: 12936789--12936823 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
12936779 TGCTGAGGTA
12936789 TTTTCAATTTCTAC
1 TTTTCAATTTCTAC
*
12936803 TTTTCAATTTCTAT
1 TTTTCAATTTCTAC
12936817 TTTTCAA
1 TTTTCAA
12936824 AAGAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:12936902 original size:323 final size:321
Alignment explanation
Indices: 12936237--12936930 Score: 889
Period size: 323 Copynumber: 2.1 Consensus size: 321
12936227 TGATATTTTT
* * * *
12936237 ATTTCTATTT-TCAAAAAAATCTACTCATATTGCGAGAGATGAGTTGAGCCTCGGGCACGCTGAG
1 ATTTC-ATTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAG
* * ****** ***
12936301 GTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCAAGGAGGTGAG
65 GTATTTTCAAAATCTATCTTTCAAAAAAAAATCAAAAAAATCAACTCATATTGCAAGGAGGTGAG
* * * * *
12936366 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTTAAAAAAATCAATTCATATTTC
130 TTGAGCCTCAAGA-ACGCTGAGGCATTTTCAATTTCTATCTTTTAAAAAAATCAACTCATATTGC
* *
12936431 GAGAAGTGAGTTGAACCTTGGCTCACGTGCTGAGCTATGTTCAATTTCTATTTTAATGTCTGTTT
194 GAGAAGTGAGTTGAACCTAGGCTCACGTGCTGAGCTATGTTCAATTTCTATTTTAATGTCTATTT
*
12936496 TTAAAGAATCAACTCATATTGCGAATGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTA
259 TTAAAGAATCAACTCATATTGCGAATGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
* *
12936559 ATTTCAATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 ATTTC-ATTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGA
** * *
12936624 GGTATTTTCAATTTCTATCTTTCAAAAAAAAATCAAAAAAATCAACTTATATTGCGA-GAGGTGA
64 GGTATTTTCAAAATCTATCTTTCAAAAAAAAATCAAAAAAATCAACTCATATTGCAAGGAGGTGA
*
12936688 GTTGAGCCTCAAG-ACGCTGAGGCATTTTCAATTTCTAT-TTTTCAAAAGAATCAACTCATATTG
129 GTTGAGCCTCAAGAACGCTGAGGCATTTTCAATTTCTATCTTTT-AAAAAAATCAACTCATATTG
* * * * *
12936751 CGAGAGGTGAGTTGAGCCTAGGCTCACGTGCTGAGGTATTTTCAATTTCTACTTTTCAATTTCTA
193 CGAGAAGTGAGTTGAACCTAGGCTCACGTGCTGAGCTATGTTCAATTTCTA-TTTT-AATGTCTA
* *
12936816 TTTTTCAAAAGAATCAACTTATATTGCGAGA-GGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
256 TTTTT--AAAGAATCAACTCATATTGCGA-ATGGTGAGTTGAGCCTCAAGACACGCTGAGGTAAT
12936880 TTCA
318 TTCA
**
12936884 ATTTC-TGTTGTC-AAAAAATCAACTTGTATTGCGAGAGGTGAGTTGAG
1 ATTTCAT-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
12936931 TCTCGGGCCA
Statistics
Matches: 323, Mismatches: 40, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
320 4 0.01
321 85 0.26
322 13 0.04
323 105 0.33
324 54 0.17
325 61 0.19
326 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (321 bp):
ATTTCATTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
TATTTTCAAAATCTATCTTTCAAAAAAAAATCAAAAAAATCAACTCATATTGCAAGGAGGTGAGT
TGAGCCTCAAGAACGCTGAGGCATTTTCAATTTCTATCTTTTAAAAAAATCAACTCATATTGCGA
GAAGTGAGTTGAACCTAGGCTCACGTGCTGAGCTATGTTCAATTTCTATTTTAATGTCTATTTTT
AAAGAATCAACTCATATTGCGAATGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
Found at i:12937093 original size:177 final size:174
Alignment explanation
Indices: 12936789--12937244 Score: 557
Period size: 177 Copynumber: 2.6 Consensus size: 174
12936779 TGCTGAGGTA
* * *
12936789 TTTTCAATTTCTA-CTTTTCAATTTCTATTTTTCAAAAGAATCAACTTATATTGCGAGAGGTGAG
1 TTTTCAATTTCCATCTTTTCAATTTCT-GTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAG
* **
12936853 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATCAACTTGTATTGCGA
64 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGA
* * * *
12936918 GAGGTGAGTTGAGTCTCGGGCCATACGCCGAGGTCTTTTCAAATTC-CG
128 GAGGTGAGCTGAGCCTCGGGCC--ACGCCGAGGTATTTTCAAATTCTAG
* * * *
12936966 TTTTCAATTTCCATTTTTTCAATTTATGCTTTTGAAAAAATTAACTCATATTGCGA-ATGGTGAG
1 TTTTCAATTTCCATCTTTTCAATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGA-GGTGAG
* * *
12937030 TTGAGCCTCATGACACACTGAGGTAATTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGA
64 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTTTCAAAAATCAACTCATATTGCGA
* * * *
12937095 GAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTCTAT
128 GAGGTGAGCTGAGCCTCGGGCCACGCCGAGGTATTTTCAAATTCTAG
12937142 TTTTCAATTT-C-TGCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAG
1 TTTTCAATTTCCAT-CTTTTCAATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAG
* * *
12937203 TTGAGCCTCAGGGCACGCTGAGATATTTTCAATTTCTGTTTT
64 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTT
12937245 TCAATTTTTG
Statistics
Matches: 240, Mismatches: 32, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
172 4 0.02
173 58 0.24
174 13 0.05
175 24 0.10
176 11 0.05
177 107 0.45
178 23 0.10
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (174 bp):
TTTTCAATTTCCATCTTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAG
GTGAGCTGAGCCTCGGGCCACGCCGAGGTATTTTCAAATTCTAG
Found at i:12937126 original size:73 final size:74
Alignment explanation
Indices: 12936982--12937137 Score: 199
Period size: 73 Copynumber: 2.1 Consensus size: 74
12936972 ATTTCCATTT
* * *
12936982 TTTCAATTTATGCTTTTGAAAAAATTAACTCATATTGCGAATGGTGAGTTGAGCCTCATGACACA
1 TTTCAATTTATGCTTTTGAAAAAATCAACTCATATTGCGAATGGTGAGCTGAGCCTCAGGACACA
*
12937047 CTGAGGTAA
66 CCGAGGTAA
* * *
12937056 TTTCAATTTATGCTTTT-CAAAAATCAACTCATATTGCGAGA-GGTGAGCTGAGCCTCGGGGCAC
1 TTTCAATTTATGCTTTTGAAAAAATCAACTCATATTGCGA-ATGGTGAGCTGAGCCTCAGGACAC
* *
12937119 GCCGAGGTAT
65 ACCGAGGTAA
*
12937129 TTTTAATTT
1 TTTCAATTT
12937138 CTATTTTTCA
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
73 53 0.75
74 18 0.25
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (74 bp):
TTTCAATTTATGCTTTTGAAAAAATCAACTCATATTGCGAATGGTGAGCTGAGCCTCAGGACACA
CCGAGGTAA
Found at i:12937150 original size:14 final size:13
Alignment explanation
Indices: 12937126--12937172 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
12937116 CACGCCGAGG
12937126 TATTTTTAATTTC
1 TATTTTTAATTTC
12937139 TATTTTTCAATTTC
1 TATTTTT-AATTTC
**
12937153 TGCTTTTAATTTC
1 TATTTTTAATTTC
*
12937166 TGTTTTT
1 TATTTTT
12937173 CAAAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.17, C:0.11, G:0.04, T:0.68
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:12937237 original size:100 final size:99
Alignment explanation
Indices: 12937060--12937426 Score: 404
Period size: 100 Copynumber: 3.8 Consensus size: 99
12937050 AGGTAATTTC
* * * *
12937060 AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAG
1 AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
12937125 GTATTTTTAATTTCTATTTTTCAATTTCTGCTTTT
66 GTATTTTCAATTTCTATTTTTCAATTT-TGCTTTT
* * *
12937160 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
1 AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * **
12937225 ATATTTTCAATTTCTGTTTTTCAATTTTTGCCTTAC
66 GTATTTTCAATTTCTATTTTTCAA-TTTTG-CTTTT
* * * *
12937261 AAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGTTGAG
1 AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
12937324 GTATTTTC-A-----A-TTTTC-A-TTT--TTTT
66 GTATTTTCAATTTCTATTTTTCAATTTTGCTTTT
* *
12937347 AATTTATG--TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 AATTTATGCTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
12937410 TGAGGTATTTTCAATTT
62 TGAGGTATTTTCAATTT
12937427 TTGTCTTCCA
Statistics
Matches: 232, Mismatches: 23, Indels: 30
0.81 0.08 0.11
Matches are distributed among these distances:
84 4 0.02
86 8 0.03
89 3 0.01
90 55 0.24
91 2 0.01
92 5 0.02
98 1 0.00
99 53 0.23
100 83 0.36
101 18 0.08
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (99 bp):
AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTATTTTCAATTTCTATTTTTCAATTTTGCTTTT
Found at i:12937535 original size:146 final size:146
Alignment explanation
Indices: 12937363--12937650 Score: 497
Period size: 146 Copynumber: 2.0 Consensus size: 146
12937353 TGTTTCAAAA
* *
12937363 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT-
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
12937427 TTGTCTTCCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAAT
66 TT-TCTTCCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAAT
12937492 TTCAATTTTTGTTTGTC
130 TTCAATTTTTGTTTGTC
*
12937509 AAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
* **
12937574 TTTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTT
66 TTTCTTCCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATT
*
12937639 TCCATTTTTGTT
131 TCAATTTTTGTT
12937651 CTTCAACTTC
Statistics
Matches: 134, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
146 132 0.99
147 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (146 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
TTTCTTCCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATT
TCAATTTTTGTTTGTC
Found at i:12937656 original size:73 final size:73
Alignment explanation
Indices: 12937361--12937656 Score: 404
Period size: 75 Copynumber: 4.0 Consensus size: 73
12937351 TATGTTTCAA
* * *
12937361 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTATTTTCAATT
12937426 TTTG-TCTTCC
64 TTTGTTCTT-C
*
12937436 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATTTCAATTTT
1 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTATTTTCAATTTT
12937501 TGTT-TGTC
66 TGTTCT-TC
* * *
12937509 --AAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATT
1 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGC--TGAGGTATTTTCAATT
*
12937572 TCT-TTCTTTC
64 TTTGTTC-TTC
* *
12937582 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTT
1 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTATTTTCAATTTT
12937647 TGTTCTTC
66 TGTTCTTC
12937655 AA
1 AA
12937657 CTTCTGTATT
Statistics
Matches: 197, Mismatches: 15, Indels: 20
0.85 0.06 0.09
Matches are distributed among these distances:
71 42 0.21
72 2 0.01
73 64 0.32
74 6 0.03
75 83 0.42
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTATTTTCAATTTT
TGTTCTTC
Found at i:12937871 original size:93 final size:93
Alignment explanation
Indices: 12937563--12938072 Score: 420
Period size: 93 Copynumber: 5.6 Consensus size: 93
12937553 CATTGAGGTA
* * * * *
12937563 TTTTCAATTTCT-TTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AG
1 TTTTCAATTTATGTT-TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * *
12937625 ACGCTGAGGTGTTTTCCA----TTTTTGT
65 ACGCTGAGGTATTTTCAATTTCTTTTTTT
* * * * * * * **
12937650 TCTTCAACTTCTGTATT-TCAAAAAAATCAGCTCATATTACGAGTGGTGAGTTGAGCCTTGACTC
1 TTTTCAATTTATGT-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GG
* *
12937714 ACACGCTGAGGTATTTTCAAATTC---TATT
63 ACACGCTGAGGTATTTTCAATTTCTTTTTTT
** * *
12937742 TTTAAAATTT-TGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGAC
1 TTTTCAATTTATGTTTGT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
12937806 ACGCTGAGGTATTTTCAATTTCTTTTTTT
65 ACGCTGAGGTATTTTCAATTTCTTTTTTT
12937835 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
* ** *
12937900 CACGCCGAGGTATTTTCAATTGATGTTTTT
64 CACGCTGAGGTATTTTCAATTTCTTTTTTT
* * *
12937930 TTTTCAATTTATGCTTTG-C--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTCAATTTATG-TTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
** ** *
12937992 ACATATCGAGGTATTTTCAAAATC----TGT
65 AC-GCT-GAGGTATTTTCAATTTCTTTTTTT
* *
12938019 TTTACAAATTT-TGTTT-T---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTTC-AATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
12938073 TGGCTCACGT
Statistics
Matches: 354, Mismatches: 46, Indels: 46
0.79 0.10 0.10
Matches are distributed among these distances:
87 82 0.23
88 7 0.02
89 9 0.03
90 30 0.08
91 26 0.07
92 43 0.12
93 106 0.30
94 6 0.02
95 41 0.12
96 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (93 bp):
TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTATTTTCAATTTCTTTTTTT
Found at i:12938098 original size:87 final size:86
Alignment explanation
Indices: 12937949--12938157 Score: 217
Period size: 87 Copynumber: 2.4 Consensus size: 86
12937939 TATGCTTTGC
* * * * *
12937949 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATATCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATATCGAGCTATGTTCAAAA
* *
12938014 TCTGTTTTACAAAT-TTTG-TTTT
66 TCTATTTT---AATGTCTGTTTTT
* * * *
12938036 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGT-GCTGAGCTATGTTCAAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATATC-GAGCTATGTTCAAA
*
12938100 TTCTATTTTAATGTCTGTTTTT
65 ATCTATTTTAATGTCTGTTTTT
* * *
12938122 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGC
12938158 TCAGGATCAC
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
84 3 0.03
85 3 0.03
86 8 0.08
87 89 0.86
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATATCGAGCTATGTTCAAAA
TCTATTTTAATGTCTGTTTTT
Found at i:12938872 original size:30 final size:30
Alignment explanation
Indices: 12938812--12938909 Score: 144
Period size: 30 Copynumber: 3.3 Consensus size: 30
12938802 CTAGCCTTTG
*
12938812 CCACCACCAACTCCACTAGCCA-AATTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
12938841 CCACCACAAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
12938871 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
12938901 CTACCACCA
1 CCACCACCA
12938910 CTTTTACCTA
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
29 21 0.35
30 39 0.65
ACGTcount: A:0.29, C:0.47, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:12946946 original size:11 final size:11
Alignment explanation
Indices: 12946903--12946954 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
12946893 TTAATTAAAT
12946903 TTTATATTTTAA
1 TTTA-ATTTTAA
12946915 TATTACATTTTAA
1 T-TTA-ATTTTAA
*
12946928 -TTATTTTTAA
1 TTTAATTTTAA
*
12946938 TTTAATTTTTA
1 TTTAATTTTAA
12946949 TTTAAT
1 TTTAAT
12946955 GTTCAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 6 0.18
11 17 0.50
12 1 0.03
13 10 0.29
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTAATTTTAA
Found at i:12946948 original size:22 final size:24
Alignment explanation
Indices: 12946904--12946946 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
12946894 TAATTAAATT
12946904 TTATATTTTAATATTACATTTTAA
1 TTATATTTTAATATTACATTTTAA
12946928 TTAT-TTTTAAT-TTA-ATTTT
1 TTATATTTTAATATTACATTTT
12946947 TATTTAATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 7 0.37
24 4 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (24 bp):
TTATATTTTAATATTACATTTTAA
Found at i:12947200 original size:60 final size:60
Alignment explanation
Indices: 12947129--12947244 Score: 223
Period size: 60 Copynumber: 1.9 Consensus size: 60
12947119 TTATTTTTTT
12947129 AAATTTAAAAAATAATTTGATAAATACAAATAAAAATATGTTTTCAATGAAATATGAAAA
1 AAATTTAAAAAATAATTTGATAAATACAAATAAAAATATGTTTTCAATGAAATATGAAAA
*
12947189 AAATTTAAAAAATCATTTGATAAATACAAATAAAAATATGTTTTCAATGAAATATG
1 AAATTTAAAAAATAATTTGATAAATACAAATAAAAATATGTTTTCAATGAAATATG
12947245 TTTCGTACAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (60 bp):
AAATTTAAAAAATAATTTGATAAATACAAATAAAAATATGTTTTCAATGAAATATGAAAA
Found at i:12951391 original size:16 final size:16
Alignment explanation
Indices: 12951366--12951396 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
12951356 CCTTCAACTC
*
12951366 TTATATGTAAAAAAAT
1 TTATAAGTAAAAAAAT
12951382 TTATAAGTAAAAAAA
1 TTATAAGTAAAAAAA
12951397 AAGAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
TTATAAGTAAAAAAAT
Found at i:12957122 original size:10 final size:10
Alignment explanation
Indices: 12957096--12957161 Score: 52
Period size: 10 Copynumber: 7.0 Consensus size: 10
12957086 CAAATTTTCG
12957096 ATAATATTTT
1 ATAATATTTT
12957106 -T-ATATTTT
1 ATAATATTTT
12957114 ATAATATTTT
1 ATAATATTTT
*
12957124 AT-CTATCTTT
1 ATAATAT-TTT
12957134 -TAATA-TTT
1 ATAATATTTT
* *
12957142 AAAACATTTT
1 ATAATATTTT
*
12957152 ATGATATTTT
1 ATAATATTTT
12957162 GTAGTTTGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
8 10 0.23
9 9 0.21
10 24 0.56
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (10 bp):
ATAATATTTT
Found at i:12957139 original size:19 final size:18
Alignment explanation
Indices: 12957096--12957141 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
12957086 CAAATTTTCG
12957096 ATAATATTTTTATATTTT
1 ATAATATTTTTATATTTT
*
12957114 ATAATATTTTATCTATCTTT
1 ATAATATTTT-TATAT-TTT
12957134 -TAATATTT
1 ATAATATTT
12957142 AAAACATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 10 0.40
19 12 0.48
20 3 0.12
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (18 bp):
ATAATATTTTTATATTTT
Found at i:12960473 original size:42 final size:42
Alignment explanation
Indices: 12960414--12960500 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
12960404 TATCACTTTA
* * *
12960414 TTGATGAAGCAGGGATGACGTTTAATGACTTCTCTGAATTCT
1 TTGATGAAGCAAGGATGACATTTAATGACTTCTCTGAATTAT
12960456 TTGATGAAGCAAGGATGACATTTAATGACTTCTCTGAATTAT
1 TTGATGAAGCAAGGATGACATTTAATGACTTCTCTGAATTAT
12960498 TTG
1 TTG
12960501 TTTACACGTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.37
Consensus pattern (42 bp):
TTGATGAAGCAAGGATGACATTTAATGACTTCTCTGAATTAT
Found at i:12962599 original size:22 final size:20
Alignment explanation
Indices: 12962565--12962614 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
12962555 CTAGTAATTA
12962565 TTATAAATTTTAA-TGATTTT
1 TTATAAATTTTAAGT-ATTTT
*
12962585 TTATAATATTTTTAAGTTTTTT
1 TTATAA-A-TTTTAAGTATTTT
12962607 TTATAAAT
1 TTATAAAT
12962615 CTAGAATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 7 0.27
21 2 0.08
22 16 0.62
23 1 0.04
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
TTATAAATTTTAAGTATTTT
Found at i:12964454 original size:26 final size:26
Alignment explanation
Indices: 12964425--12964477 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12964415 GATGTGCCAT
12964425 TACCCCTTAAGCCTATGTCATCACAA
1 TACCCCTTAAGCCTATGTCATCACAA
12964451 TACCCCTTAAGCCTATGTCATCACAA
1 TACCCCTTAAGCCTATGTCATCACAA
12964477 T
1 T
12964478 CTTCTTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.34, G:0.08, T:0.28
Consensus pattern (26 bp):
TACCCCTTAAGCCTATGTCATCACAA
Found at i:12969074 original size:22 final size:22
Alignment explanation
Indices: 12969049--12969112 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
12969039 AATTTTAGCT
12969049 ATTAATGTTTAATTT-TTTATTA
1 ATTAAT-TTTAATTTATTTATTA
* *
12969071 ATTAGTTTTTATTTATTTATT-
1 ATTAATTTTAATTTATTTATTA
12969092 -TTAA-TTTAATTTAATTT-TTA
1 ATTAATTTTAATTT-ATTTATTA
12969112 A
1 A
12969113 CTTTTTGAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
19 9 0.26
20 7 0.21
21 7 0.21
22 11 0.32
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (22 bp):
ATTAATTTTAATTTATTTATTA
Found at i:12971403 original size:19 final size:19
Alignment explanation
Indices: 12971372--12971461 Score: 78
Period size: 19 Copynumber: 4.8 Consensus size: 19
12971362 TAAAGGGTCT
*
12971372 TTTTTAT-ACATTTTATAA
1 TTTTTATAAAATTTTATAA
*
12971390 TTTTTATAAAATTTTACAA
1 TTTTTATAAAATTTTATAA
* *
12971409 TTTTT-TAAATTTTTTATGA
1 TTTTTATAAA-ATTTTATAA
* *
12971428 TTTTTAT-AATTTTTCTAA
1 TTTTTATAAAATTTTATAA
* *
12971446 TTTTAACAAAATTTTA
1 TTTTTATAAAATTTTA
12971462 ATATAATTTA
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
18 23 0.40
19 33 0.58
20 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (19 bp):
TTTTTATAAAATTTTATAA
Found at i:12971413 original size:28 final size:28
Alignment explanation
Indices: 12971373--12971543 Score: 106
Period size: 28 Copynumber: 6.1 Consensus size: 28
12971363 AAAGGGTCTT
12971373 TTTTATACA-TTTTATAATTTTTATAAAA
1 TTTTATA-ATTTTTATAATTTTTATAAAA
* * *
12971401 TTTTACAATTTTT-TAAATTTTT-TATGAT
1 TTTTATAATTTTTAT-AATTTTTATA-AAA
* * *
12971429 TTTTATAATTTTTCTAATTTTAACAAAA
1 TTTTATAATTTTTATAATTTTTATAAAA
*
12971457 TTTTA-ATATAATTTAT-ATTTTTATTAAAA
1 TTTTATA-AT-TTTTATAATTTTTA-TAAAA
* * * * *
12971486 TTTAATAAATTTAATAAATTTAAT-AAA
1 TTTTATAATTTTTATAATTTTTATAAAA
*
12971513 TTTTATTGATTTTTAT--TTTTTATAAAA
1 TTTTA-TAATTTTTATAATTTTTATAAAA
12971540 TTTT
1 TTTT
12971544 TTTACCACAT
Statistics
Matches: 107, Mismatches: 24, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
26 5 0.05
27 19 0.18
28 62 0.58
29 20 0.19
30 1 0.01
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.58
Consensus pattern (28 bp):
TTTTATAATTTTTATAATTTTTATAAAA
Found at i:12971477 original size:56 final size:56
Alignment explanation
Indices: 12971372--12971478 Score: 128
Period size: 56 Copynumber: 1.9 Consensus size: 56
12971362 TAAAGGGTCT
* * **
12971372 TTTTTATACATTTTATAATTTTTATAAAATTTTACAATTTTTTAAATTTTTTATGA
1 TTTTTATACATTTTATAATTTTAACAAAATTTTACAATAATTTAAATTTTTTATGA
* *
12971428 TTTTTATA-ATTTTTCTAATTTTAACAAAATTTTA-ATATAATTTATATTTTT
1 TTTTTATACA-TTTTATAATTTTAACAAAATTTTACA-ATAATTTAAATTTTT
12971479 ATTAAAATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
55 2 0.05
56 41 0.95
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (56 bp):
TTTTTATACATTTTATAATTTTAACAAAATTTTACAATAATTTAAATTTTTTATGA
Found at i:12971497 original size:9 final size:9
Alignment explanation
Indices: 12971483--12971515 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
12971473 ATTTTTATTA
12971483 AAATTTAAT
1 AAATTTAAT
12971492 AAATTTAAT
1 AAATTTAAT
12971501 AAATTTAAT
1 AAATTTAAT
12971510 AAATTT
1 AAATTT
12971516 TATTGATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AAATTTAAT
Found at i:12971899 original size:89 final size:91
Alignment explanation
Indices: 12971705--12971900 Score: 201
Period size: 90 Copynumber: 2.2 Consensus size: 91
12971695 AAAAAAAGAA
* * * *
12971705 CTTAATTGCTTTTTTTTTTAAGTTTGAGGGCTTTTTTATACATTTTGAAAGTCTAAATATCCAAT
1 CTTAATTACTTTTTTTTTTAAGTTTGAGAGCTTTTTTATACATTTTAAAAGTCTAAATACCCAAT
12971770 TGAGTGCAAAAAAAAAAAAGAGCAAGG
66 TGAGTGC-AAAAAAAAAAAGAGCAAGG
* * * *
12971797 C--ACTTAATGTTTTTTTTT-A-TTTGAGAGCATTTTTTATGCATTTTAAAAGT-TCAATTACCC
1 CTTAATTACT-TTTTTTTTTAAGTTTGAGAGC-TTTTTTATACATTTTAAAAGTCT-AAATACCC
* *
12971857 AGTTGAGTGC-AAAAATAAAA-A-CAATGG
63 AATTGAGTGCAAAAAAAAAAAGAGCAA-GG
12971884 CTTAATTACTTTTTTTT
1 CTTAATTACTTTTTTTT
12971901 AAATTAAGAG
Statistics
Matches: 86, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
86 3 0.03
87 4 0.05
88 16 0.19
89 14 0.16
90 39 0.45
91 9 0.10
92 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.42
Consensus pattern (91 bp):
CTTAATTACTTTTTTTTTTAAGTTTGAGAGCTTTTTTATACATTTTAAAAGTCTAAATACCCAAT
TGAGTGCAAAAAAAAAAAGAGCAAGG
Found at i:12972039 original size:3 final size:3
Alignment explanation
Indices: 12972031--12972071 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
12972021 ACAATCACTC
*
12972031 ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
12972072 CATCTCGCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:12973453 original size:21 final size:22
Alignment explanation
Indices: 12973426--12973473 Score: 89
Period size: 21 Copynumber: 2.2 Consensus size: 22
12973416 TGTCACACCA
12973426 GTGGTATAGTGACCCCGTAACT
1 GTGGTATAGTGACCCCGTAACT
12973448 -TGGTATAGTGACCCCGTAACT
1 GTGGTATAGTGACCCCGTAACT
12973469 GTGGT
1 GTGGT
12973474 CTCGTACCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (22 bp):
GTGGTATAGTGACCCCGTAACT
Found at i:12976447 original size:53 final size:53
Alignment explanation
Indices: 12976353--12976489 Score: 150
Period size: 53 Copynumber: 2.6 Consensus size: 53
12976343 TATAAGCCCG
* * * * *
12976353 TAACTGGTTGGTTATGGAATCATATTGAAAAAAGACAATATCGTGCAAGACCGA
1 TAACTGGTGGGTTATGAAATCATATGGAAAAAAGACAATATCATACAAGACC-A
* * * *
12976407 -AACTGGTGGGTTATGAAATCATATGGAAAGAATACCATATCATATAAGACCA
1 TAACTGGTGGGTTATGAAATCATATGGAAAAAAGACAATATCATACAAGACCA
* * *
12976459 TAATTGGTGGATTATGACATCATATGGAAAA
1 TAACTGGTGGGTTATGAAATCATATGGAAAA
12976490 GTTAAGGAAG
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.01
53 68 0.99
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (53 bp):
TAACTGGTGGGTTATGAAATCATATGGAAAAAAGACAATATCATACAAGACCA
Found at i:12977773 original size:35 final size:35
Alignment explanation
Indices: 12977727--12977830 Score: 199
Period size: 35 Copynumber: 3.0 Consensus size: 35
12977717 TAGTGACTAG
12977727 TTTAGATTTTTTACTAAAGTAATTTGTTTTTCTCA
1 TTTAGATTTTTTACTAAAGTAATTTGTTTTTCTCA
12977762 TTTAGATTTTTTACTAAAGTAATTTGTTTTTCTCA
1 TTTAGATTTTTTACTAAAGTAATTTGTTTTTCTCA
*
12977797 TTTAGATTTTTTACTAAAGTAAGTTGTTTTTCTC
1 TTTAGATTTTTTACTAAAGTAATTTGTTTTTCTC
12977831 GCAATGTAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.25, C:0.09, G:0.10, T:0.57
Consensus pattern (35 bp):
TTTAGATTTTTTACTAAAGTAATTTGTTTTTCTCA
Found at i:12978186 original size:21 final size:23
Alignment explanation
Indices: 12978162--12978209 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
12978152 TCTTATAGCT
12978162 TTAAA-AT-TTTTTAT-ATAATAA
1 TTAAACATATTTTTATAATAA-AA
12978183 TTAAACATATTTTTATAATAAAA
1 TTAAACATATTTTTATAATAAAA
12978206 TTAA
1 TTAA
12978210 TATTAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.21
22 2 0.08
23 13 0.54
24 4 0.17
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TTAAACATATTTTTATAATAAAA
Found at i:12978961 original size:30 final size:30
Alignment explanation
Indices: 12978925--12978986 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
12978915 ACTTATTTTA
*
12978925 TTATTAATTTTGTTATTATTTTAAAGGCAT
1 TTATTAATTTTATTATTATTTTAAAGGCAT
* *
12978955 TTATTAATTTTATTATTATTTTAGAGGTAT
1 TTATTAATTTTATTATTATTTTAAAGGCAT
12978985 TT
1 TT
12978987 GCTTGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (30 bp):
TTATTAATTTTATTATTATTTTAAAGGCAT
Found at i:12985705 original size:6 final size:5
Alignment explanation
Indices: 12985653--12985703 Score: 54
Period size: 5 Copynumber: 10.4 Consensus size: 5
12985643 AATAATAACT
*
12985653 AATAA AAT-- AATAA GAA-AA AATAA AATAA ACTAA AATAA AATAAA AATAA
1 AATAA AATAA AATAA -AATAA AATAA AATAA AATAA AATAA AAT-AA AATAA
12985702 AA
1 AA
12985704 ATTGGGTTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.08
4 2 0.05
5 27 0.69
6 7 0.18
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:13005599 original size:14 final size:15
Alignment explanation
Indices: 13005566--13005606 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
13005556 ATTGAAAATG
13005566 TTTATAAAAATAAAAA
1 TTTATAAAAAT-AAAA
*
13005582 TTTATAAAAAT-TAA
1 TTTATAAAAATAAAA
13005596 TTTA-AAAAATA
1 TTTATAAAAATA
13005607 GTTAAAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 6 0.26
14 6 0.26
16 11 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTTATAAAAATAAAA
Found at i:13008642 original size:39 final size:40
Alignment explanation
Indices: 13008477--13008643 Score: 91
Period size: 39 Copynumber: 4.1 Consensus size: 40
13008467 TAATAAGAAT
* *
13008477 AATATTAAAGTAAAGTAA-AC---AATAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
* * *
13008513 AATATATATATATGTATA-TAATAGAAATACACACTACTATATAATAA
1 AATAT-TA-A-AT-TAAAGTAATACAAA-A-ACAATACTATAT-AT-A
* * * *
13008560 TAATAATAAA-TATAGAAATACAAAAAGCAA-A-TATAATAAA
1 -AATATTAAATTAAAGTAATACAAAAA-CAATACTAT-ATATA
13008600 AATATTAAATTAAAGTAATA-AAAAACAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
13008639 AATAT
1 AATAT
13008644 ATATATACAT
Statistics
Matches: 98, Mismatches: 14, Indels: 35
0.67 0.10 0.24
Matches are distributed among these distances:
36 5 0.05
37 2 0.02
38 4 0.04
39 27 0.28
40 16 0.16
41 4 0.04
42 4 0.04
43 7 0.07
44 8 0.08
45 11 0.11
46 3 0.03
47 3 0.03
48 4 0.04
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (40 bp):
AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
Found at i:13008897 original size:3 final size:3
Alignment explanation
Indices: 13008884--13008966 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
13008874 GAGGGCATAT
13008884 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
13008928 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
13008967 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:13008908 original size:12 final size:12
Alignment explanation
Indices: 13008884--13008963 Score: 76
Period size: 12 Copynumber: 6.8 Consensus size: 12
13008874 GAGGGCATAT
13008884 ATAATAT-AATA
1 ATAATATAAATA
13008895 ATAATATAAATA
1 ATAATATAAATA
*
13008907 ATAATATATACATG
1 ATAATATA-A-ATA
*
13008921 AGAA-AT-AATA
1 ATAATATAAATA
13008931 ATAATATAAATA
1 ATAATATAAATA
* *
13008943 ATAGTAAAAATA
1 ATAATATAAATA
*
13008955 ATAAAATAA
1 ATAATATAA
13008964 TAAAACAAAG
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 32 0.58
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:13009320 original size:19 final size:21
Alignment explanation
Indices: 13009297--13009347 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
13009287 CTTCTTTCCA
13009297 AAAAAACAAAAAAA-CACCTC
1 AAAAAACAAAAAAACCACCTC
*
13009317 AAAAAAACAAAAAAACCTCCTC
1 -AAAAAACAAAAAAACCACCTC
*
13009339 -CAAAACAAA
1 AAAAAACAAA
13009348 GAACAATCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 8 0.30
21 14 0.52
22 5 0.19
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (21 bp):
AAAAAACAAAAAAACCACCTC
Found at i:13009342 original size:23 final size:23
Alignment explanation
Indices: 13009274--13009375 Score: 84
Period size: 23 Copynumber: 4.4 Consensus size: 23
13009264 CCTTTCCAAG
*
13009274 AAACAAAAATAACCTTCTTTCCAAAA
1 AAACAAAAA-AACC-TC-CTCCAAAA
*
13009300 AAACAAAAAAA-CACCT-CAAAA
1 AAACAAAAAAACCTCCTCCAAAA
13009321 AAACAAAAAAACCTCCTCCAAAA
1 AAACAAAAAAACCTCCTCCAAAA
* * * *
13009344 CAAA-GAACAATCCTTCTCCAAAA
1 -AAACAAAAAAACCTCCTCCAAAA
*
13009367 AACCAAAAA
1 AAACAAAAA
13009376 CCCACCACCT
Statistics
Matches: 62, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
21 16 0.26
22 7 0.11
23 24 0.39
24 4 0.06
25 2 0.03
26 9 0.15
ACGTcount: A:0.60, C:0.26, G:0.01, T:0.13
Consensus pattern (23 bp):
AAACAAAAAAACCTCCTCCAAAA
Found at i:13009343 original size:22 final size:22
Alignment explanation
Indices: 13009268--13009394 Score: 80
Period size: 22 Copynumber: 5.6 Consensus size: 22
13009258 AACTAGCCTT
* *
13009268 TCCAAGAAACAAAAATAACCTTCTT
1 TCCAAAAAACAAAAA-AACC-TC-C
*
13009293 TCCAAAAAAACAAAAAAA-CACC
1 TCC-AAAAAACAAAAAAACCTCC
*
13009315 TCAAAAAAACAAAAAAACCTCC
1 TCCAAAAAACAAAAAAACCTCC
*
13009337 TCC--AAAACAAAGAACAATCCTTC
1 TCCAAAAAACAAA-AA-AA-CCTCC
* * *
13009360 TCCAAAAAACCAAAAACCCACC
1 TCCAAAAAACAAAAAAACCTCC
* *
13009382 ACCTAAAAACAAA
1 TCCAAAAAACAAA
13009395 GTCTTGAATG
Statistics
Matches: 81, Mismatches: 14, Indels: 17
0.72 0.12 0.15
Matches are distributed among these distances:
20 8 0.10
21 16 0.20
22 22 0.27
23 9 0.11
24 3 0.04
25 12 0.15
26 11 0.14
ACGTcount: A:0.57, C:0.29, G:0.02, T:0.12
Consensus pattern (22 bp):
TCCAAAAAACAAAAAAACCTCC
Found at i:13011039 original size:11 final size:12
Alignment explanation
Indices: 13010999--13011042 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
13010989 CCTTGTTTCC
13010999 CTTTCCCTTCCTT
1 CTTT-CCTTCCTT
*
13011012 CTTTCTTTCCTT
1 CTTTCCTTCCTT
13011024 CTTTCCTTCC-T
1 CTTTCCTTCCTT
13011035 CTTTCCTT
1 CTTTCCTT
13011043 TGTCTTCTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 9 0.31
12 16 0.55
13 4 0.14
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (12 bp):
CTTTCCTTCCTT
Found at i:13012035 original size:14 final size:14
Alignment explanation
Indices: 13012016--13012045 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13012006 TTTTTAAGCG
13012016 GAAAAAAAAGATGA
1 GAAAAAAAAGATGA
*
13012030 GAAAAAAAATATGA
1 GAAAAAAAAGATGA
13012044 GA
1 GA
13012046 CATGGTTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.20, T:0.10
Consensus pattern (14 bp):
GAAAAAAAAGATGA
Found at i:13014886 original size:29 final size:31
Alignment explanation
Indices: 13014833--13014897 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 31
13014823 AATAGATTAT
*
13014833 ATTTTTATAATTTTTAAGTTATT-AAATAAA
1 ATTTTTATAATTTTTAAGTGATTAAAATAAA
*
13014863 ATTTTTAT-ATTTTTAAG-GAGTTAAAATATA
1 ATTTTTATAATTTTTAAGTGA-TTAAAATAAA
13014893 ATTTT
1 ATTTT
13014898 ACCTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 1 0.03
29 11 0.35
30 19 0.61
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (31 bp):
ATTTTTATAATTTTTAAGTGATTAAAATAAA
Found at i:13014898 original size:29 final size:29
Alignment explanation
Indices: 13014830--13014898 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 29
13014820 TTTAATAGAT
* *
13014830 TATATTTTTATAATTTTTAAGTTATTAAA
1 TATAATTTTATAATTTTTAAGTGATTAAA
*
13014859 TAAAATTTT-TATATTTTTAAG-GAGTTAAAA
1 TATAATTTTATA-ATTTTTAAGTGA-TT-AAA
13014889 TATAATTTTA
1 TATAATTTTA
13014899 CCTTTATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
28 3 0.09
29 18 0.56
30 11 0.34
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (29 bp):
TATAATTTTATAATTTTTAAGTGATTAAA
Found at i:13017860 original size:20 final size:20
Alignment explanation
Indices: 13017812--13017867 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
13017802 AGAATTAAAT
13017812 TATA-AAAAATACAAATATA
1 TATATAAAAATACAAATATA
* * * *
13017831 AAGATTAAAATACATATATA
1 TATATAAAAATACAAATATA
*
13017851 TATATAAAAATATAAAT
1 TATATAAAAATACAAAT
13017868 TTAAAATATA
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (20 bp):
TATATAAAAATACAAATATA
Found at i:13034339 original size:21 final size:22
Alignment explanation
Indices: 13034313--13034360 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
13034303 ACCTTCAACT
*
13034313 TTAAACCTT-AAATCTTGAATC
1 TTAAACCTTCAAACCTTGAATC
13034334 TTAAA-CTTCAAACCTTGAATC
1 TTAAACCTTCAAACCTTGAATC
*
13034355 CTAAAC
1 TTAAAC
13034361 TTGAATTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (22 bp):
TTAAACCTTCAAACCTTGAATC
Found at i:13039497 original size:31 final size:32
Alignment explanation
Indices: 13039462--13039531 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
13039452 ATTTATTTAA
* *
13039462 ATATATATGA-TTGAATTAAAATTAAAATTTT
1 ATATATATCATTTGAACTAAAATTAAAATTTT
**
13039493 ATATATA-CATTTGAACTGCAATTAAAATTTT
1 ATATATATCATTTGAACTAAAATTAAAATTTT
13039524 ATATATAT
1 ATATATAT
13039532 AATTACATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 1 0.03
31 32 0.97
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (32 bp):
ATATATATCATTTGAACTAAAATTAAAATTTT
Found at i:13051551 original size:29 final size:29
Alignment explanation
Indices: 13051468--13051551 Score: 70
Period size: 29 Copynumber: 3.0 Consensus size: 29
13051458 GCGACTAAAT
*
13051468 TAAAAAAAATTG-A-TAT--TTGGTTGAC
1 TAAAAAAAATTGAACTATAGTTGGATGAC
* * * *
13051493 CAAAAAGAAAATAAACAATAGTT-GAGTGAC
1 TAAAAA-AAATTGAACTATAGTTGGA-TGAC
13051523 TAAAAAAAATTGAACTATAGTTGGATGAC
1 TAAAAAAAATTGAACTATAGTTGGATGAC
13051552 CTGTGATGTA
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
25 5 0.12
26 4 0.09
27 1 0.02
28 2 0.05
29 18 0.42
30 13 0.30
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.26
Consensus pattern (29 bp):
TAAAAAAAATTGAACTATAGTTGGATGAC
Found at i:13052433 original size:30 final size:30
Alignment explanation
Indices: 13052387--13052510 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
13052377 TTTTATTATG
*
13052387 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
13052418 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
13052448 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
13052478 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
13052508 CCA
1 CCA
13052511 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:13052442 original size:15 final size:15
Alignment explanation
Indices: 13052397--13052504 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
13052387 CCAATATCTC
13052397 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
13052412 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
13052427 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
13052442 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
13052457 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
13052472 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
13052487 GATACCCATATCTTT
1 GATACCCATATCTTT
13052502 GAT
1 GAT
13052505 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:13057127 original size:30 final size:31
Alignment explanation
Indices: 13057081--13057144 Score: 112
Period size: 30 Copynumber: 2.1 Consensus size: 31
13057071 TTTTATTATG
13057081 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATATCTCGATACCCATATCTTTGACTTT
*
13057112 CCAATAT-TTGATACCCATATCTTTGACTTT
1 CCAATATCTCGATACCCATATCTTTGACTTT
13057142 CCA
1 CCA
13057145 TAAATATGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 25 0.78
31 7 0.22
ACGTcount: A:0.27, C:0.28, G:0.06, T:0.39
Consensus pattern (31 bp):
CCAATATCTCGATACCCATATCTTTGACTTT
Found at i:13057136 original size:15 final size:15
Alignment explanation
Indices: 13057091--13057137 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
13057081 CCAATATCTC
13057091 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
13057106 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
13057121 GATACCCATATCTTT
1 GATACCCATATCTTT
13057136 GA
1 GA
13057138 CTTTCCATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:13057765 original size:30 final size:31
Alignment explanation
Indices: 13057729--13057802 Score: 78
Period size: 36 Copynumber: 2.3 Consensus size: 31
13057719 GAATGTATAT
13057729 TTAATAATTG-TTAACATTAATGGAAGACAA
1 TTAATAATTGCTTAACATTAATGGAAGACAA
*
13057759 TTAATAATGGTTGCCATTAACATTAATGGGAGACAA
1 TTAATAA---TTG-C-TTAACATTAATGGAAGACAA
*
13057795 TCAATAAT
1 TTAATAAT
13057803 GACAACCACC
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
30 7 0.19
33 4 0.11
36 25 0.69
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.32
Consensus pattern (31 bp):
TTAATAATTGCTTAACATTAATGGAAGACAA
Found at i:13060243 original size:32 final size:32
Alignment explanation
Indices: 13060198--13060266 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
13060188 TAAAAGAACA
13060198 ATTT-TACCCTTTATTAATTAATCATTATTCT
1 ATTTATACCCTTTATTAATTAATCATTATTCT
13060229 ATTTATACCCTTTATTAATTAATCATTATTCT
1 ATTTATACCCTTTATTAATTAATCATTATTCT
13060261 ATTTAT
1 ATTTAT
13060267 TTTTGTTATC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 4 0.11
32 33 0.89
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.55
Consensus pattern (32 bp):
ATTTATACCCTTTATTAATTAATCATTATTCT
Found at i:13066966 original size:8 final size:8
Alignment explanation
Indices: 13066947--13066976 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
13066937 GATATTAGAG
13066947 TTATTATTA
1 TTATT-TTA
13066956 TTATTTTA
1 TTATTTTA
13066964 TTATTTTA
1 TTATTTTA
13066972 TTATT
1 TTATT
13066977 CTCAAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TTATTTTA
Found at i:13067323 original size:20 final size:20
Alignment explanation
Indices: 13067298--13067341 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
13067288 CTCAATATTG
13067298 AACTGATAAAAATAAATTCA
1 AACTGATAAAAATAAATTCA
13067318 AACTGATAAAAATAAATTCA
1 AACTGATAAAAATAAATTCA
13067338 AACT
1 AACT
13067342 ATCTATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (20 bp):
AACTGATAAAAATAAATTCA
Found at i:13068106 original size:2 final size:2
Alignment explanation
Indices: 13068099--13068127 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13068089 GGTCTGTTCT
13068099 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
13068128 TTAATGATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:13076127 original size:3 final size:3
Alignment explanation
Indices: 13076119--13076143 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
13076109 CAGTATTAAA
13076119 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
13076144 CCTGAGCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:13086635 original size:20 final size:21
Alignment explanation
Indices: 13086592--13086640 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
13086582 AAGGTTATAA
*
13086592 ATTTATATAAATATATAATAT
1 ATTTATATAAATATAAAATAT
*
13086613 ATTT-TATATAAT-TAAAATTT
1 ATTTATATA-AATATAAAATAT
13086633 ATTTATAT
1 ATTTATAT
13086641 GGACACGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTTATATAAATATAAAATAT
Found at i:13091125 original size:19 final size:19
Alignment explanation
Indices: 13091080--13091129 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
13091070 GTATAATTAG
13091080 AATTATTTTATAATTGTTT
1 AATTATTTTATAATTGTTT
*
13091099 -ATAAATTTTATAATAT-TTT
1 AAT-TATTTTATAAT-TGTTT
13091118 AATTATTTTATA
1 AATTATTTTATA
13091130 CTTTTATAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 2 0.08
19 21 0.81
20 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
AATTATTTTATAATTGTTT
Found at i:13094339 original size:115 final size:115
Alignment explanation
Indices: 13094137--13094367 Score: 435
Period size: 115 Copynumber: 2.0 Consensus size: 115
13094127 TACTTCATGC
*
13094137 AACCAATATCAAACATGTCAAACTCACTTTTCATTGAACTTTTGAACTTTCCAAACATCTGCTTA
1 AACCAAGATCAAACATGTCAAACTCACTTTTCATTGAACTTTTGAACTTTCCAAACATCTGCTTA
* *
13094202 TTGTTTCCTGTAAAAATAATATCAATGACGTATAAACTTACTATGAGAAT
66 TTGTTTCCTGTAAAAATAATATCAACGACATATAAACTTACTATGAGAAT
13094252 AACCAAGATCAAACATGTCAAACTCACTTTTCATTGAACTTTTGAACTTTCCAAACATCTGCTTA
1 AACCAAGATCAAACATGTCAAACTCACTTTTCATTGAACTTTTGAACTTTCCAAACATCTGCTTA
13094317 TTGTTTCCTGTAAAAATAATATCAACGACATATAAACTTACTATGAGAAT
66 TTGTTTCCTGTAAAAATAATATCAACGACATATAAACTTACTATGAGAAT
13094367 A
1 A
13094368 CCTCCATATT
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 113 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (115 bp):
AACCAAGATCAAACATGTCAAACTCACTTTTCATTGAACTTTTGAACTTTCCAAACATCTGCTTA
TTGTTTCCTGTAAAAATAATATCAACGACATATAAACTTACTATGAGAAT
Found at i:13100672 original size:21 final size:22
Alignment explanation
Indices: 13100639--13100679 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
13100629 CACGTGCCCG
*
13100639 ATTATAAACGATA-AATGTTGA
1 ATTAGAAACGATATAATGTTGA
*
13100660 ATTAGAAAGGATATAATGTT
1 ATTAGAAACGATATAATGTT
13100680 TTATTTGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.46, C:0.02, G:0.17, T:0.34
Consensus pattern (22 bp):
ATTAGAAACGATATAATGTTGA
Found at i:13100954 original size:35 final size:35
Alignment explanation
Indices: 13100931--13101123 Score: 266
Period size: 35 Copynumber: 5.5 Consensus size: 35
13100921 GGCAAAGTGC
*
13100931 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGA
*
13100966 GAAATGTAGGTATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGA
* * *
13101001 GAAATATAGGTATGGTATTATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGA
* *
13101036 GAAATGTAGGTATGGCATT-TCCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTAT-CCATACCGAGTTGA
* *
13101071 GAAACGTAGGTATGGTATTTTCCATACCGAGTAT-A
1 GAAATGTAGGTATGGTATTATCCATACCGAGT-TGA
13101106 -AAATGTAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
13101124 TCAATGAGGA
Statistics
Matches: 140, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
34 18 0.13
35 120 0.86
36 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTATCCATACCGAGTTGA
Found at i:13101097 original size:105 final size:104
Alignment explanation
Indices: 13100931--13101123 Score: 300
Period size: 105 Copynumber: 1.8 Consensus size: 104
13100921 GGCAAAGTGC
* *
13100931 GAAATGTAGGTATGGTATTATCCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATACCGA
1 GAAATGTAGGTATGGCATTATCCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCGA
13100996 GT-TGAGAAATATAGGTATGGTATTATCCATACTGAGTTAA
66 GTAT-A-AAATATAGGTATGGTATTATCCATACTGAGTTAA
**
13101036 GAAATGTAGGTATGGCATT-TCCCATACCGAGTTGTGAAACGTAGGTATGGTATTTTCCATACCG
1 GAAATGTAGGTATGGCATTAT-CCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCG
*
13101100 AGTATAAAATGTAGGTATGGTATT
65 AGTATAAAATATAGGTATGGTATT
13101124 TCAATGAGGA
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
104 18 0.22
105 62 0.77
106 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (104 bp):
GAAATGTAGGTATGGCATTATCCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCGA
GTATAAAATATAGGTATGGTATTATCCATACTGAGTTAA
Found at i:13102375 original size:27 final size:27
Alignment explanation
Indices: 13102351--13102405 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
13102341 GCTACCACAC
*
13102351 GACCCCGACGACGCTCGACCACCACGA
1 GACCCCGACGACGCTCAACCACCACGA
*
13102378 GACCCTGACGACGCTCAACCACCACGA
1 GACCCCGACGACGCTCAACCACCACGA
13102405 G
1 G
13102406 CACTACGAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.45, G:0.22, T:0.05
Consensus pattern (27 bp):
GACCCCGACGACGCTCAACCACCACGA
Found at i:13117299 original size:8 final size:8
Alignment explanation
Indices: 13117286--13117315 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
13117276 AATTATTTCA
*
13117286 AATTCATC
1 AATTCAAC
13117294 AATTCAAC
1 AATTCAAC
13117302 AATTCAAC
1 AATTCAAC
13117310 AATTCA
1 AATTCA
13117316 TATATTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (8 bp):
AATTCAAC
Found at i:13118336 original size:25 final size:25
Alignment explanation
Indices: 13118277--13118355 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
13118267 ATACATGTTT
* * * *
13118277 GCTCATACGAGCTATA-AACTATAA
1 GCTCATCCGAGCTAAATAACGAGAA
*
13118301 GCTCTTCCGAGCTAAATAACG-GAAA
1 GCTCATCCGAGCTAAATAACGAG-AA
* *
13118326 GCTCATGCGAGCTGAATAACGAGAA
1 GCTCATCCGAGCTAAATAACGAGAA
13118351 GCTCA
1 GCTCA
13118356 GAAGAGTTGA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
24 13 0.30
25 30 0.68
26 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (25 bp):
GCTCATCCGAGCTAAATAACGAGAA
Found at i:13135576 original size:37 final size:38
Alignment explanation
Indices: 13135534--13135618 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 38
13135524 AATTAATACA
*
13135534 ATTTTTT-AATTAATAATTAT-AATTTAATTTATATTT
1 ATTTTTTAAATTAATAATTATAAATCTAATTTATATTT
** * *
13135570 ATTTTTTAAATTTGTAATTATCAAATCTATTTTATTTTT
1 ATTTTTTAAATTAATAATTAT-AAATCTAATTTATATTT
13135609 A-TTTTTAAAT
1 ATTTTTTAAAT
13135619 GTGAATTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
36 7 0.17
37 11 0.27
38 9 0.22
39 14 0.34
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.61
Consensus pattern (38 bp):
ATTTTTTAAATTAATAATTATAAATCTAATTTATATTT
Found at i:13135577 original size:18 final size:18
Alignment explanation
Indices: 13135534--13135578 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
13135524 AATTAATACA
13135534 ATTTTTTAATTAATAATT
1 ATTTTTTAATTAATAATT
** * *
13135552 ATAATTTAATTTATATTT
1 ATTTTTTAATTAATAATT
13135570 ATTTTTTAA
1 ATTTTTTAA
13135579 ATTTGTAATT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTTTAATTAATAATT
Found at i:13136387 original size:18 final size:18
Alignment explanation
Indices: 13136364--13136413 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
13136354 AAGTAGATTT
13136364 TTATATCATGTATACTTC
1 TTATATCATGTATACTTC
*
13136382 TTATATCTATGAATA-TTC
1 TTATATC-ATGTATACTTC
13136400 TT-TATCATGTATAC
1 TTATATCATGTATAC
13136414 CATGGTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 6 0.21
17 4 0.14
18 12 0.43
19 6 0.21
ACGTcount: A:0.30, C:0.14, G:0.06, T:0.50
Consensus pattern (18 bp):
TTATATCATGTATACTTC
Found at i:13138299 original size:397 final size:396
Alignment explanation
Indices: 13137558--13138330 Score: 954
Period size: 397 Copynumber: 1.9 Consensus size: 396
13137548 TCTAATGTCT
13137558 TAAGTGTAGTATTTTCGTCTATGTACACTTGTATTTTTTTGAACATATTAGTTAATAAAATTATT
1 TAAGTGTAGTATTTTCGTCTATGTACACTTGTATTTTTTTGAACATATTAGTTAATAAAATTATT
* * **
13137623 CATGAATTATATTAATATCCTTTGTATATTATCCTCAATGGTTTTTGCATGCAAAGAAAAATGAA
66 CATGAATTACATTAATA-CCTTTGTATAATATCCTCAATGGTTTTTGCACACAAAGAAAAATGAA
* * * *
13137688 AGCAAATATTAGTTCATTGGTTGTCTAATGTTTAACTAATACTAAACGGTATTATGTGATTAGAT
130 AGCAAATATTAGCTCACTGGTTGTCTAATGTTTAACTAATACTAAACGATATTATATGATTAGAT
*
13137753 CGTAATACAGAAAGATAGCTTATATTAGTAGATGAACCTAAAAATATCCTTAGTCTAATCGAAAA
195 CGTAATACAGAAAGATAGCTTATATTAGTAGACGAACCTAAAAATATCCTTAGTCTAATCGAAAA
** * * * *
13137818 TGAGCAAACTGATTAAAAGACTAATTTGTCGTCTATCAAGTTCAATTGGGGAGATGCTTTATCTT
260 TGAGCAAACCAATTAAAAGACAAATATGTCGTCTATCAAGTCCAATTAGGGAGATGCTTTATCTT
* * *
13137883 GGGCATCAGAGCAGATGACTCCCAGAAGATAAAGATATAGATGTGATTGACCAGATGTTGGATCT
325 AGGCATCAGAGCAGATGACTCCCAGAAGATAAAGACATAGATGTGACTGACCAGATGTTGGATCT
13137948 GGTGCCC
390 GGTGCCC
* * **
13137955 TAAGTGTTGTATTTTCGT-TAATGTACGCTTGTAATTTTTTTGAACA-AGTTTA-TTTCTAAAAT
1 TAAGTGTAGTATTTTCGTCT-ATGTACACTTGT-ATTTTTTTGAACATA--TTAGTTAATAAAAT
* * * *
13138017 TATTCATGAATTACGTTAATA-CTTTGTATAATGTCCTC-ATGTGATTTTTGTACACAAAGCAAA
62 TATTCATGAATTACATTAATACCTTTGTATAATATCCTCAATG-G-TTTTTGCACACAAAGAAAA
* * *
13138080 AT-AGGAGCAAATGTT-GCTCACTGGTTGTCTAATGTTTAAACTAATACTAAGCGATATTATATG
125 ATGA-AAGCAAATATTAGCTCACTGGTTGTCTAATGTTT-AACTAATACTAAACGATATTATATG
* * * * ** *
13138143 GTTGGATTGTAATAC-GAAA-ATACATCTTATATTAGTAGACGAACCTAATTATGTCCTTAGTCT
188 ATTAGATCGTAATACAGAAAGAT--AGCTTATATTAGTAGACGAACCTAAAAATATCCTTAGTCT
* * *
13138206 AATCGAAAATGAGTAAACCAATTGAAAGACAAATATGTTGTCTATCAAGTCCAATTAGGGAGATG
251 AATCGAAAATGAGCAAACCAATTAAAAGACAAATATGTCGTCTATCAAGTCCAATTAGGGAGATG
* * ** * * *
13138271 TTTTGTCTTAGGCATC-GAAGTGGATGACTCCTAGAAGATAGAGGCATAGATGTGACTGAC
316 CTTTATCTTAGGCATCAG-AGCAGATGACTCCCAGAAGATAAAGACATAGATGTGACTGAC
13138331 TGGATTGACA
Statistics
Matches: 319, Mismatches: 46, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
395 5 0.02
396 43 0.13
397 228 0.71
398 40 0.13
399 3 0.01
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (396 bp):
TAAGTGTAGTATTTTCGTCTATGTACACTTGTATTTTTTTGAACATATTAGTTAATAAAATTATT
CATGAATTACATTAATACCTTTGTATAATATCCTCAATGGTTTTTGCACACAAAGAAAAATGAAA
GCAAATATTAGCTCACTGGTTGTCTAATGTTTAACTAATACTAAACGATATTATATGATTAGATC
GTAATACAGAAAGATAGCTTATATTAGTAGACGAACCTAAAAATATCCTTAGTCTAATCGAAAAT
GAGCAAACCAATTAAAAGACAAATATGTCGTCTATCAAGTCCAATTAGGGAGATGCTTTATCTTA
GGCATCAGAGCAGATGACTCCCAGAAGATAAAGACATAGATGTGACTGACCAGATGTTGGATCTG
GTGCCC
Found at i:13139127 original size:58 final size:58
Alignment explanation
Indices: 13139063--13139237 Score: 208
Period size: 52 Copynumber: 3.1 Consensus size: 58
13139053 ATAGAAATTG
*
13139063 TGAAAATGGAGAAATTGAAATCATTTGGAAATTATTATGATTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATTGAAATCATTTGGAAATGATTATGATTTTCTCCAAAATGAAAA
* * *
13139121 TGAAAATGGAGAAATGGAAA-CATTTGGAAATGATTATGGGTTTTTTCC------AAAA
1 TGAAAATGGAGAAATTGAAATCATTTGGAAATGATTAT-GATTTTCTCCAAAATGAAAA
*
13139173 TGAAAATGGAGAAA-TGGAATCATTTGGAAATGA--ATGTAGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATTGAAATCATTTGGAAATGATTATG-A-TTTTCTCCAAAATGAAAA
13139230 TGAAAATG
1 TGAAAATG
13139238 AAAATGAAAA
Statistics
Matches: 99, Mismatches: 8, Indels: 21
0.77 0.06 0.16
Matches are distributed among these distances:
49 1 0.01
50 2 0.02
51 10 0.10
52 31 0.31
57 28 0.28
58 27 0.27
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.30
Consensus pattern (58 bp):
TGAAAATGGAGAAATTGAAATCATTTGGAAATGATTATGATTTTCTCCAAAATGAAAA
Found at i:13139250 original size:13 final size:13
Alignment explanation
Indices: 13139220--13139270 Score: 95
Period size: 13 Copynumber: 4.0 Consensus size: 13
13139210 AGTTTTCTCC
13139220 AAAATGAAAATG-
1 AAAATGAAAATGA
13139232 AAAATGAAAATGA
1 AAAATGAAAATGA
13139245 AAAATGAAAATGA
1 AAAATGAAAATGA
13139258 AAAATGAAAATGA
1 AAAATGAAAATGA
13139271 CCTGAAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 12 0.32
13 26 0.68
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:13139250 original size:19 final size:19
Alignment explanation
Indices: 13139220--13139283 Score: 87
Period size: 18 Copynumber: 3.4 Consensus size: 19
13139210 AGTTTTCTCC
13139220 AAAATGAAAATGAAAATG-
1 AAAATGAAAATGAAAATGA
13139238 AAAATGAAAAATGAAAATGA
1 AAAATG-AAAATGAAAATGA
**
13139258 AAAATGAAAATG-ACCTGA
1 AAAATGAAAATGAAAATGA
13139276 AAAATGAA
1 AAAATGAA
13139284 TTTATGTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
18 18 0.43
19 18 0.43
20 6 0.14
ACGTcount: A:0.66, C:0.03, G:0.16, T:0.16
Consensus pattern (19 bp):
AAAATGAAAATGAAAATGA
Found at i:13139256 original size:52 final size:51
Alignment explanation
Indices: 13139099--13139258 Score: 139
Period size: 52 Copynumber: 3.0 Consensus size: 51
13139089 GGAAATTATT
13139099 ATGA-TTTTCTCCAAAATGAAAATGAAAATGGAGAAATGGAAACATTTGGAAATGA
1 ATGAGTTTTCTCCAAAATGAAAATGAAAAT-GA-AAAT-GAAA-A-TTGGAAATGA
* * * * *
13139154 TTATGGGTTTTTTCCAAAATGAAAATGGAGAAATG-GAAT--CATTTGGAAATGA
1 --ATGAGTTTTCTCCAAAATGAAAAT-GA-AAATGAAAATGAAAATTGGAAATGA
* *
13139206 ATGTAGTTTTCTCCAAAATGAAAATGAAAATGAAAATGAAAAATGAAAATGA
1 ATG-AGTTTTCTCCAAAATGAAAATGAAAATGAAAATGAAAATTGGAAATGA
13139258 A
1 A
13139259 AAATGAAAAT
Statistics
Matches: 84, Mismatches: 12, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
49 5 0.06
50 8 0.10
51 19 0.23
52 20 0.24
54 1 0.01
57 6 0.07
58 18 0.21
59 3 0.04
60 4 0.05
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (51 bp):
ATGAGTTTTCTCCAAAATGAAAATGAAAATGAAAATGAAAATTGGAAATGA
Found at i:13139283 original size:7 final size:6
Alignment explanation
Indices: 13139220--13139270 Score: 84
Period size: 6 Copynumber: 8.2 Consensus size: 6
13139210 AGTTTTCTCC
13139220 AAAATG AAAATG AAAATG AAAATG AAAAATG AAAATG AAAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG -AAAATG AAAATG -AAAATG AAAATG
13139270 A
1 A
13139271 CCTGAAAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 31 0.72
7 12 0.28
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:13141829 original size:21 final size:21
Alignment explanation
Indices: 13141804--13141875 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
13141794 AGGTCAAACG
* *
13141804 CCCGTATGACTGAGGTACACA
1 CCCGTGTGACTGAGGCACACA
**
13141825 CCCGTGTGAAGGGAGGCACACGA
1 CCCGTGTG-ACTGAGGCACAC-A
13141848 -CCGTGTGACTGAGGCACACA
1 CCCGTGTGACTGAGGCACACA
13141868 CCCGTGTG
1 CCCGTGTG
13141876 GACCAAGGAC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.02
21 24 0.57
22 16 0.38
23 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.15
Consensus pattern (21 bp):
CCCGTGTGACTGAGGCACACA
Found at i:13141859 original size:43 final size:44
Alignment explanation
Indices: 13141791--13141875 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 44
13141781 TAGGCCGTGT
* *
13141791 GGGAGGTCAAACGCCCGTATGACTGAGGTACACACCCGTGTGAA
1 GGGAGGTCAAACGACCGTATGACTGAGGCACACACCCGTGTGAA
* *
13141835 GGGAGG-CACACGACCGTGTGACTGAGGCACACACCCGTGTG
1 GGGAGGTCAAACGACCGTATGACTGAGGCACACACCCGTGTG
13141876 GACCAAGGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 31 0.84
44 6 0.16
ACGTcount: A:0.25, C:0.27, G:0.34, T:0.14
Consensus pattern (44 bp):
GGGAGGTCAAACGACCGTATGACTGAGGCACACACCCGTGTGAA
Found at i:13144992 original size:9 final size:9
Alignment explanation
Indices: 13144978--13145006 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
13144968 CCTAGCAGCC
13144978 CATTTATTT
1 CATTTATTT
13144987 CATTTATTT
1 CATTTATTT
13144996 CATTTATTT
1 CATTTATTT
13145005 CA
1 CA
13145007 CATTTTGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.62
Consensus pattern (9 bp):
CATTTATTT
Found at i:13146028 original size:46 final size:47
Alignment explanation
Indices: 13145921--13146146 Score: 169
Period size: 46 Copynumber: 4.8 Consensus size: 47
13145911 CCACATTATG
* * * **
13145921 AGAGCTAGTGTAAGACCATGT-TCGGGACATGGCATCAGCGTTGAGACA
1 AGAGCCAGTGTAAGA-CATGTCT-GGGACATGGCATCAGCCTCGAGATT
* *
13145969 AGAGCTAGGGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGACTT
1 AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGAGA-TT
* * * * *
13146016 A-AGCCAGTGTAAGACACGTCTGGGACAT-GCAT-TGGCTACAAGATG
1 AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCT-CGAGATT
* * * * * *
13146061 ATAGTCAGTGTAAAACCATGTCTGAGACATGGCATC-GACTTGAGA-T
1 AGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCCTCGAGATT
*
13146107 ATGAGCCAGTGTAAGAACATGTCTGGTACATGGCATCAGC
1 A-GAGCCAGTGTAAG-ACATGTCTGGGACATGGCATCAGC
13146147 ACCTTACCCA
Statistics
Matches: 142, Mismatches: 26, Indels: 20
0.76 0.14 0.11
Matches are distributed among these distances:
45 5 0.04
46 57 0.40
47 56 0.39
48 24 0.17
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGAGATT
Found at i:13152545 original size:46 final size:46
Alignment explanation
Indices: 13152492--13152667 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
13152482 ACATTATGAG
*
13152492 AGCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGACAT
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGACAT
*
13152537 AAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGG-CTACGAGATGAT
1 -AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCT-CGAGA-CAT
* * * *
13152584 AGTCAGTGTAAGATCATGTCTGGGACATGGCATC-GACTTGAGATAT
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGACAT
13152630 GAGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 -AGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
13152668 ACCTTACCCA
Statistics
Matches: 115, Mismatches: 7, Indels: 14
0.85 0.05 0.10
Matches are distributed among these distances:
45 2 0.02
46 53 0.46
47 52 0.45
48 8 0.07
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGACAT
Found at i:13152627 original size:47 final size:45
Alignment explanation
Indices: 13152492--13152665 Score: 215
Period size: 47 Copynumber: 3.7 Consensus size: 45
13152482 ACATTATGAG
* * *
13152492 AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACATA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC-GACTCGAGATATA
*
13152538 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAT-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGACT-CGAGAT-ATA
* * *
13152584 AGTCAGTGTAAGATCATGTCTGGGACATGGCATCGACTTGAGATATG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTCGAGATATA
13152631 AGCCAGTGTAAGACTATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCG
13152666 GCACCTTACC
Statistics
Matches: 115, Mismatches: 7, Indels: 11
0.86 0.05 0.08
Matches are distributed among these distances:
45 3 0.03
46 51 0.44
47 53 0.46
48 8 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGACTCGAGATATA
Found at i:13152637 original size:93 final size:92
Alignment explanation
Indices: 13152446--13152667 Score: 258
Period size: 93 Copynumber: 2.4 Consensus size: 92
13152436 GTCATTTATT
* * * *
13152446 TATGAGCTATTGTAAGACATGTCTGGG--A--CATCGACTACATTATGAGAGCCAGTGTAAGACA
1 TATGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGAGAGCCAGTGTAAGACA
*
13152507 TGTCTAGGACATGCATCGGCCTCGAGA
66 TGTCTAGGACATGCATCGGACTCGAGA
* * * *
13152534 CATAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGAT
1 TATGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-ATGATGAGAGCCAGTGTAAGA-
* *
13152598 CATGTCTGGGACATGGCATC-GACTTGAGA
64 CATGTCTAGGACAT-GCATCGGACTCGAGA
13152627 TATGAGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 TATGAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
13152668 ACCTTACCCA
Statistics
Matches: 112, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
88 23 0.21
90 1 0.01
92 25 0.22
93 37 0.33
94 18 0.16
95 8 0.07
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (92 bp):
TATGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGAGAGCCAGTGTAAGACA
TGTCTAGGACATGCATCGGACTCGAGA
Found at i:13159113 original size:16 final size:16
Alignment explanation
Indices: 13159094--13159124 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13159084 CTTCTTCACT
13159094 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
13159110 TACTTACTTACTTAA
1 TACTCACTTACTTAA
13159125 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:13159130 original size:20 final size:20
Alignment explanation
Indices: 13159091--13159130 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
13159081 GAACTTCTTC
* *
13159091 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
13159111 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
13159131 TTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:13159518 original size:55 final size:53
Alignment explanation
Indices: 13159365--13159567 Score: 201
Period size: 55 Copynumber: 3.8 Consensus size: 53
13159355 CCTTTTGAAA
* * *
13159365 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGATAT-CTTGCCTTATAGAC
* * * ** *
13159418 CTAACCAATGTCATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAC
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGATATC-TTGCCTTATAG-AC
** * * *
13159473 CTTATGAATGCCATGTCTTGACATGGTCTTACATGATTTGCTTGCCTTAGAAAC
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGATAT-CTTGCCTTATAGAC
* * *
13159527 CTTACCAATTTCCATGCCTTGGCATGGTCTTACATGATATC
1 CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGATATC
13159568 CTTAAACCCT
Statistics
Matches: 121, Mismatches: 24, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
52 1 0.01
53 42 0.35
54 10 0.08
55 67 0.55
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCTTGCCTTATAGAC
Found at i:13164726 original size:37 final size:37
Alignment explanation
Indices: 13164665--13164810 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
13164655 TACGTATGAT
* *
13164665 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
13164700 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
13164737 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
13164774 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
13164811 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:13164827 original size:46 final size:46
Alignment explanation
Indices: 13164774--13165042 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
13164764 TAAGTGTAGC
* *
13164774 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
13164820 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
13164866 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
13164918 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
13164964 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
13165016 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
13165043 AGTACTCAAA
Statistics
Matches: 197, Mismatches: 14, Indels: 24
0.84 0.06 0.10
Matches are distributed among these distances:
46 111 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 82 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:13164893 original size:52 final size:52
Alignment explanation
Indices: 13164817--13165036 Score: 290
Period size: 52 Copynumber: 4.3 Consensus size: 52
13164807 TAGCTAAAGC
* *
13164817 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* *
13164870 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
13164922 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
13164968 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
13165020 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
13165037 ATCAGAAGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 42 0.29
49 1 0.01
52 85 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:13164939 original size:98 final size:98
Alignment explanation
Indices: 13164774--13165042 Score: 466
Period size: 98 Copynumber: 2.7 Consensus size: 98
13164764 TAAGTGTAGC
* * *
13164774 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
13164839 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
13164873 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
13164938 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
13164971 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
13165036 GATCAGA
66 GATCAGA
13165043 AGTACTCAAA
Statistics
Matches: 162, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
98 153 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:13169606 original size:16 final size:16
Alignment explanation
Indices: 13169587--13169617 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13169577 CTTCTTCACT
13169587 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
13169603 TACTTACTTACTTAA
1 TACTCACTTACTTAA
13169618 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:13169623 original size:20 final size:20
Alignment explanation
Indices: 13169584--13169623 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
13169574 GAACTTCTTC
* *
13169584 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
13169604 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
13169624 TTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:13169999 original size:55 final size:53
Alignment explanation
Indices: 13169874--13170063 Score: 197
Period size: 55 Copynumber: 3.5 Consensus size: 53
13169864 ATTTCCATCT
*
13169874 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGC
* * * *
13169927 ATTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGC
1 CTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATGCCATGC
*** * *
13169982 CTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTACCATGC
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGC
*
13170037 CTCTG-CATGGTCTTACATGGCATCCTT
1 CT-TGACATGGTCTTACATGGGATCCTT
13170064 AAACCCTAAA
Statistics
Matches: 114, Mismatches: 16, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
52 2 0.02
53 31 0.27
54 8 0.07
55 69 0.61
56 4 0.04
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (53 bp):
CTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGC
Found at i:13183502 original size:13 final size:13
Alignment explanation
Indices: 13183484--13183511 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
13183474 ACAAATGATA
13183484 AAAATTTTCACAC
1 AAAATTTTCACAC
13183497 AAAATTTTCACAC
1 AAAATTTTCACAC
13183510 AA
1 AA
13183512 GTCACATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:13190186 original size:23 final size:23
Alignment explanation
Indices: 13190160--13190283 Score: 117
Period size: 23 Copynumber: 5.4 Consensus size: 23
13190150 CTGCTCATTT
* *
13190160 GAGCTTACCGATTCAGCTCGTAA
1 GAGCTTACTGATTCAGCTCATAA
* * **
13190183 GAGCTTAATGTTTCAGCTCATTG
1 GAGCTTACTGATTCAGCTCATAA
*
13190206 GAGCTTACTGATTCAGCTCGTAA
1 GAGCTTACTGATTCAGCTCATAA
**
13190229 GAGCTTACTG-TTCAGCTCATTG
1 GAGCTTACTGATTCAGCTCATAA
* * *
13190251 GAACTTACCGTTTCAGCTCA-ATA
1 GAGCTTACTGATTCAGCTCATA-A
13190274 GAGCTTACTG
1 GAGCTTACTG
13190284 TCCATCAACT
Statistics
Matches: 79, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
22 17 0.22
23 62 0.78
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (23 bp):
GAGCTTACTGATTCAGCTCATAA
Found at i:13190219 original size:46 final size:45
Alignment explanation
Indices: 13190152--13190269 Score: 182
Period size: 46 Copynumber: 2.6 Consensus size: 45
13190142 ACTCACCACT
*
13190152 GCTCATTTGAGCTTACCGATTCAGCTCGTAAGAGCTTAATGTTTCA
1 GCTCATTGGAGCTTACCGATTCAGCTCGTAAGAGCTTAATG-TTCA
* *
13190198 GCTCATTGGAGCTTACTGATTCAGCTCGTAAGAGCTTACTGTTCA
1 GCTCATTGGAGCTTACCGATTCAGCTCGTAAGAGCTTAATGTTCA
* *
13190243 GCTCATTGGAACTTACCGTTTCAGCTC
1 GCTCATTGGAGCTTACCGATTCAGCTC
13190270 AATAGAGCTT
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
45 28 0.42
46 38 0.58
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (45 bp):
GCTCATTGGAGCTTACCGATTCAGCTCGTAAGAGCTTAATGTTCA
Found at i:13190258 original size:45 final size:45
Alignment explanation
Indices: 13190152--13190284 Score: 187
Period size: 45 Copynumber: 2.9 Consensus size: 45
13190142 ACTCACCACT
* *
13190152 GCTCATTTGAGCTTACCGATTCAGCTCGTAAGAGCTTAATGTTTCA
1 GCTCATTGGAGCTTACCGATTCAGCTCGTAAGAGCTTACTG-TTCA
*
13190198 GCTCATTGGAGCTTACTGATTCAGCTCGTAAGAGCTTACTGTTCA
1 GCTCATTGGAGCTTACCGATTCAGCTCGTAAGAGCTTACTGTTCA
* * *
13190243 GCTCATTGGAACTTACCGTTTCAGCTC-AATAGAGCTTACTGT
1 GCTCATTGGAGCTTACCGATTCAGCTCGTA-AGAGCTTACTGT
13190285 CCATCAACTC
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
44 1 0.01
45 40 0.51
46 38 0.48
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (45 bp):
GCTCATTGGAGCTTACCGATTCAGCTCGTAAGAGCTTACTGTTCA
Found at i:13201353 original size:59 final size:57
Alignment explanation
Indices: 13201250--13201376 Score: 132
Period size: 59 Copynumber: 2.2 Consensus size: 57
13201240 CAATAATGGA
* * * * *
13201250 TTTTTTTTATTACCCTACTATGAAAAGTTAGAAAATAATTACTCAATTATTAGTAAT
1 TTTTTTTTATTAACCTACTATAAAAAGTTACAAAATAATCACTCAACTATTAGTAAT
* **
13201307 TTTTTTTTTTGTAACCTAACTATAAAAAGTTACAAAATGGTCACTCAACTATT--TAAT
1 TTTTTTTTAT-TAACCT-ACTATAAAAAGTTACAAAATAATCACTCAACTATTAGTAAT
13201364 TGTCTTTTTTATT
1 T-T-TTTTTTATT
13201377 CACCCAACTA
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
57 14 0.25
58 7 0.12
59 36 0.63
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (57 bp):
TTTTTTTTATTAACCTACTATAAAAAGTTACAAAATAATCACTCAACTATTAGTAAT
Found at i:13201648 original size:2 final size:2
Alignment explanation
Indices: 13201641--13201669 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13201631 TTGGAAAACA
13201641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13201670 ATAGGAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13204308 original size:150 final size:149
Alignment explanation
Indices: 13203990--13204578 Score: 844
Period size: 150 Copynumber: 3.9 Consensus size: 149
13203980 TAGGCGATCT
* * * *
13203990 GGAGGCACATTCCACTGAGGATCTAATACTACCCATCACATTGGATGGAGAAGAGTGCGGAATTC
1 GGAGGCACCTTCCACTGAGGATCTACTACTACCCATCACATTGGACGGAGAAGAGTGAGGAATTC
** * *
13204055 CACTGTATGTCTCACTTCTAGGAGTCC-T--TCCACTCTTCTTATTAGTTTTCCTTCCAAGATTT
66 CACCATGTGTCTCACTTCTAGGAGTCCTTCCTCCACTCTT-TTATCAGTTTTCCTTCCAAGATTT
**
13204117 TCTTCAGAGTGCAATTTGGA
130 TCTTCACTGTGCAATTTGGA
* * * *
13204137 AGAGGCACCTTCCACTGAGGATCTACTACTACCCATCACGTTGTACGGAGAAGAGTGGGGAATTC
1 GGAGGCACCTTCCACTGAGGATCTACTACTACCCATCACATTGGACGGAGAAGAGTGAGGAATTC
*
13204202 CACCGTGTGTCTCACTTCTAGGAGTCCTTCCTCCACTCATTTTATCAGTTTTCCTTCCAAGATTT
66 CACCATGTGTCTCACTTCTAGGAGTCCTTCCTCCACTC-TTTTATCAGTTTTCCTTCCAAGATTT
*
13204267 TCTTCACTGTGCAATTTGGG
130 TCTTCACTGTGCAATTTGGA
*
13204287 GGAGGCACCTTTCACTGAGGATCTACTACTACCCATCACATTGGACGGAGAAGAGTGAGGAATTC
1 GGAGGCACCTTCCACTGAGGATCTACTACTACCCATCACATTGGACGGAGAAGAGTGAGGAATTC
* ** * *
13204352 CACTATGCATCTCACTTCTAGGAGTCCTTCCTCCACCCTTTATATCAGTTTTCCTTACAAGATTT
66 CACCATGTGTCTCACTTCTAGGAGTCCTTCCTCCACTCTTT-TATCAGTTTTCCTTCCAAGATTT
13204417 TCTTCACTGTGCAATTTGGA
130 TCTTCACTGTGCAATTTGGA
* * *
13204437 GGAGGCACCTTCCACCGAGGATCTACTACTACCCATCACATTGAATGGAGAAGAGTGAGGAATTC
1 GGAGGCACCTTCCACTGAGGATCTACTACTACCCATCACATTGGACGGAGAAGAGTGAGGAATTC
* * **
13204502 CATCATGTGTCTCGCTTCTAGGAGT-CTGTCCTCCACTCTTTTTATCAGTTTTCCTTCCATCATT
66 CACCATGTGTCTCACTTCTAGGAGTCCT-TCCTCCACTC-TTTTATCAGTTTTCCTTCCAAGATT
13204566 TTCTTCACTGTGC
129 TTCTTCACTGTGC
13204579 TTTCTCTTCT
Statistics
Matches: 397, Mismatches: 38, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
147 83 0.21
148 1 0.00
149 5 0.01
150 303 0.76
151 5 0.01
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (149 bp):
GGAGGCACCTTCCACTGAGGATCTACTACTACCCATCACATTGGACGGAGAAGAGTGAGGAATTC
CACCATGTGTCTCACTTCTAGGAGTCCTTCCTCCACTCTTTTATCAGTTTTCCTTCCAAGATTTT
CTTCACTGTGCAATTTGGA
Found at i:13206846 original size:36 final size:36
Alignment explanation
Indices: 13206806--13206879 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
13206796 AGAAATAGGA
*
13206806 CAAAGCATTGTTTTTGCAATGACACAAAAATAAAAT
1 CAAAGCATTGTTTTTGCAATGAAACAAAAATAAAAT
13206842 CAAAGCATTGTTTTTGCAATGAAACAAAAATAAAAT
1 CAAAGCATTGTTTTTGCAATGAAACAAAAATAAAAT
13206878 CA
1 CA
13206880 TACTCCCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.27
Consensus pattern (36 bp):
CAAAGCATTGTTTTTGCAATGAAACAAAAATAAAAT
Found at i:13209194 original size:3 final size:3
Alignment explanation
Indices: 13209180--13209213 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
13209170 ATCATACAAG
* *
13209180 TCA TCT TCA TCA TCA TCA TTA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
13209214 TATTGGAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (3 bp):
TCA
Found at i:13209214 original size:15 final size:15
Alignment explanation
Indices: 13209186--13209216 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
13209176 CAAGTCATCT
13209186 TCATCATCATCATTA
1 TCATCATCATCATTA
13209201 TCATCATCATCATTA
1 TCATCATCATCATTA
13209216 T
1 T
13209217 TGGAATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (15 bp):
TCATCATCATCATTA
Done.