Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 49 of 316
Found at i:14289669 original size:40 final size:40
Alignment explanation
Indices: 14289599--14289766 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
14289589 CGGGGTTTAG
** * *
14289599 CCGGATATAACCACTCGCAC-AAGGCCTTCGGATCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAAC
* * *
14289638 CCGGATATGGTCACTAGCATAAATGCCTTCGGGA-CTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTC-GGATCTTAAC
* **
14289678 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAAC
* * * * *
14289718 TCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGA-CTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTC-GGATCTTAAC
14289759 CCGGATAT
1 CCGGATAT
14289767 CATTCGAGTA
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 18 0.17
40 57 0.53
41 29 0.27
42 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAAC
Found at i:14289749 original size:41 final size:39
Alignment explanation
Indices: 14289622--14289766 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 39
14289612 CTCGCACAAG
* * * *
14289622 GCCTTCGGATCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGCTAGCACAAAT
14289662 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
** * *
14289702 GCCTTCGGATCTTAGTTCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
14289743 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTC-GGACTTAGCCCGGATAT
14289767 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 55 0.61
41 29 0.32
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
GCCTTCGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:14290996 original size:38 final size:38
Alignment explanation
Indices: 14290954--14291029 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
14290944 CAAGAACTCC
14290954 TTCCTCCCTCCTTAGAATTTTCAGCCAAAAGAAATGAA
1 TTCCTCCCTCCTTAGAATTTTCAGCCAAAAGAAATGAA
* *
14290992 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCCTCCTTAGAATTTTCAGCCAAAAGAAATGAA
14291030 AAAGGATGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (38 bp):
TTCCTCCCTCCTTAGAATTTTCAGCCAAAAGAAATGAA
Found at i:14293894 original size:50 final size:49
Alignment explanation
Indices: 14293775--14293961 Score: 216
Period size: 50 Copynumber: 3.8 Consensus size: 49
14293765 TGAGGTCGCA
* * * * *
14293775 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
14293826 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
14293876 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
*
14293925 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
14293962 TAGCTTCGGC
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 41 0.34
50 43 0.36
51 30 0.25
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:14296979 original size:15 final size:15
Alignment explanation
Indices: 14296959--14297023 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
14296949 GTATCTTGGG
14296959 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
14296974 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
14296989 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
14297004 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
14297018 TTTCTT
1 TTTCTT
14297024 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
14 10 0.23
15 31 0.72
16 2 0.05
ACGTcount: A:0.09, C:0.15, G:0.14, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14296991 original size:30 final size:30
Alignment explanation
Indices: 14296955--14297023 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
14296945 CATCGTATCT
14296955 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTTATCT-TGGATTTCTTTATTC
*
14296985 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTGGATTTCTTTATTC
*
14297015 -GGTTTTCTT
1 TGGGTTTCTT
14297024 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.14, G:0.17, T:0.59
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTGGATTTCTTTATTC
Found at i:14299233 original size:50 final size:49
Alignment explanation
Indices: 14299151--14299295 Score: 175
Period size: 49 Copynumber: 2.9 Consensus size: 49
14299141 GATCTATTGT
* * * **
14299151 TAGGTCGCATGTGTAGTACTAAATGTAGGCTACTACGTGTATTAGA-TGG
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-G
* * *
14299200 TGAGGTCACGTGTGTAGTACGAAGTGCATGCTACTACGTGTACCAGACTG
1 T-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTG
* *
14299250 TTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
14299296 TAGCTTCGGC
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
49 41 0.51
50 39 0.48
51 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTG
Found at i:14309290 original size:23 final size:23
Alignment explanation
Indices: 14309264--14309308 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
14309254 CCATTTATCG
14309264 TCATTAAAATGAGTGAACCTTCC
1 TCATTAAAATGAGTGAACCTTCC
14309287 TCATTAAAATGAGTGAACCTTC
1 TCATTAAAATGAGTGAACCTTC
14309309 TTCTTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (23 bp):
TCATTAAAATGAGTGAACCTTCC
Found at i:14311335 original size:68 final size:68
Alignment explanation
Indices: 14311188--14311350 Score: 154
Period size: 68 Copynumber: 2.4 Consensus size: 68
14311178 AGCCGATTTG
* * * * *
14311188 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATA
*
14311253 TATC
65 TATA
* *
14311257 TCTCACGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC-
14311319 ATATAGTA
62 ATATA-TA
*
14311327 TCTCGTAGC-CTTCTTGTATACATG
1 TCTCGTAGCTC-TCTTGTCTACATG
14311351 ATGTGCACTC
Statistics
Matches: 79, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
67 1 0.01
68 40 0.51
69 8 0.10
70 5 0.06
71 25 0.32
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:14313359 original size:40 final size:40
Alignment explanation
Indices: 14313285--14313592 Score: 349
Period size: 40 Copynumber: 7.6 Consensus size: 40
14313275 AACCCAAGTA
* * * *
14313285 CCTTCGAGATTTAG-CCGGATATAG-CAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
14313324 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
14313364 CCTTCGGGACTTAGCCC-GAGTATAGAAACTACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAG--TC-ACT-AGCACAAATG
* *
14313407 CCTTCGGGACTTCGCCCGGGTATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
14313447 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
14313490 CCTTCGGGACTTCA-CCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTT-AGCCCGGATATAGTCACTAGCACAAATG
* ** *
14313530 CCTTTGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
14313570 CGTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
14313593 CATCCGAATA
Statistics
Matches: 235, Mismatches: 18, Indels: 31
0.83 0.06 0.11
Matches are distributed among these distances:
39 16 0.07
40 145 0.62
41 2 0.01
42 1 0.00
43 67 0.29
44 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:14313406 original size:83 final size:81
Alignment explanation
Indices: 14313313--14313592 Score: 422
Period size: 83 Copynumber: 3.4 Consensus size: 81
14313303 ATATAGCAAT
*
14313313 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAG
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAG
14313378 CCCGAGTATAGAAACTAC
66 CCCG-GTATAG-AACTAC
* * *
14313396 TCACACAAATGCCTTCGGGACTTCGCCCGGGTATAGTCACTAGCACAAATGCCTTCGGGACTTAG
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAG
14313461 CCCGGGTATAGCAACTAC
66 CCC-GGTATAG-AACTAC
*
14313479 TCGCACAAATGCCTTCGGGACTTCA-CCCGGATATAGTCACTAGCACAAATGCCTTTGGGACTTA
1 TCGCACAAATGCCTTCGGGACTT-AGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTA
*
14313543 GCCCGGATATAGGA--AC
65 GCCCGG-TATAGAACTAC
*
14313559 TCGCACAAATGCGTTCGGGACTTAGCCCGGATAT
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
14313593 CATCCGAATA
Statistics
Matches: 182, Mismatches: 11, Indels: 11
0.89 0.05 0.05
Matches are distributed among these distances:
79 1 0.01
80 33 0.18
82 3 0.02
83 144 0.79
84 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (81 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAG
CCCGGTATAGAACTAC
Found at i:14313526 original size:123 final size:122
Alignment explanation
Indices: 14313285--14313592 Score: 360
Period size: 123 Copynumber: 2.5 Consensus size: 122
14313275 AACCCAAGTA
* * * * * *
14313285 CCTTCGAGATTTAG-CCGGATATAGCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
14313349 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGAGTATAGAAACTACTCACACAAATG
66 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGAGTATAG-AACTACTCACACAAATG
* * ** *
14313407 CCTTCGGGACTTCGCCCGGGTATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
14313472 -CAACTACTCGCACAAATGCCTTCGGGACTTCA-CCCG-GATATAG-TC-ACT-AGCACAAATG
66 TC-ACTA---GCACAAATGCCTTCGGGACTT-AGCCCGAG-TATAGAACTACTCA-CACAAATG
* * *
14313530 CCTTTGGGACTTAGCCCGGATATAGGAACTCGCACAAATGCGTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
14313593 CATCCGAATA
Statistics
Matches: 159, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
122 13 0.08
123 113 0.71
124 1 0.01
125 1 0.01
126 30 0.19
127 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (122 bp):
CCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATGCCTTCGGGACTTAGCCCGAGTATAGAACTACTCACACAAATG
Found at i:14314837 original size:20 final size:20
Alignment explanation
Indices: 14314800--14314840 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14314790 TTTTCATCAT
* *
14314800 AGTAAAATAAAATAATAAAA
1 AGTAAAACAAAACAATAAAA
*
14314820 AGTAAAACAAAACCATAAAA
1 AGTAAAACAAAACAATAAAA
14314840 A
1 A
14314841 TAATTAAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.15
Consensus pattern (20 bp):
AGTAAAACAAAACAATAAAA
Found at i:14315351 original size:28 final size:28
Alignment explanation
Indices: 14315303--14315396 Score: 136
Period size: 28 Copynumber: 3.3 Consensus size: 28
14315293 GTGACAGAGT
*
14315303 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
14315332 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
14315360 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
*
14315388 CACTAGAAC
1 CACCAGAAC
14315397 GCTTCCTCCA
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
28 53 0.88
29 7 0.12
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:14315563 original size:27 final size:28
Alignment explanation
Indices: 14315499--14315565 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
14315489 AAATTAACCC
* *
14315499 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
14315527 TAGGGGTATAATGGTAATTTTGCAT-CA
1 TAGGGGTATAATGGTAATTTTGCATACA
14315554 TAGGGGTATAAT
1 TAGGGGTATAAT
14315566 AGCACATCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 14 0.38
28 23 0.62
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:14319296 original size:27 final size:27
Alignment explanation
Indices: 14319266--14319415 Score: 192
Period size: 27 Copynumber: 5.5 Consensus size: 27
14319256 ATATTGAGTC
* * * *
14319266 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
14319293 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
14319320 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
14319348 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
14319375 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
14319402 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14319416 CGTACAATTT
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 85 0.79
28 23 0.21
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:14319358 original size:55 final size:55
Alignment explanation
Indices: 14319266--14319416 Score: 198
Period size: 55 Copynumber: 2.8 Consensus size: 55
14319256 ATATTGAGTC
* * * * *
14319266 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCACATAATCAAAT
* ** *
14319320 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCACATAATCAAAT
*
14319375 CGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTAGTGCC
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCC
14319417 GTACAATTTA
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 36 0.42
55 50 0.58
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCACATAATCAAAT
Found at i:14327791 original size:40 final size:40
Alignment explanation
Indices: 14327747--14328024 Score: 362
Period size: 40 Copynumber: 6.8 Consensus size: 40
14327737 ATAGCAATTC
*
14327747 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
14327787 GCACAAATGCCTTCAGGACTTAGCCCGGGTATAG-CAACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA
* *
14327827 CTCACACAAATGCCTTCGGGACTTTGCCCGGATATAGTCACTA
1 ---GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
*
14327870 GCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA
*
14327910 CTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTA
1 ---GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
** *
14327953 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
14327993 GCACAAATGCCTTCTGGACTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
14328025 CATCCGAATA
Statistics
Matches: 210, Mismatches: 18, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
39 2 0.01
40 136 0.65
43 70 0.33
44 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:14327840 original size:83 final size:82
Alignment explanation
Indices: 14327717--14328024 Score: 464
Period size: 83 Copynumber: 3.8 Consensus size: 82
14327707 AACCCAAGTA
* *
14327717 CCTTCAGGATTTAG-CCGGGTATAGCAAT--TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCAGGACTTAGCCCGGGTATAGCAATACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
14327779 AGTCACTAGCACAAATG
66 AGTCACTAGCACAAATG
* *
14327796 CCTTCAGGACTTAGCCCGGGTATAGCAACTACTCACACAAATGCCTTCGGGACTTTGCCCGGATA
1 CCTTCAGGACTTAGCCCGGGTATAGCAA-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
14327861 TAGTCACTAGCACAAATG
65 TAGTCACTAGCACAAATG
* *
14327879 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCAGGACTTAGCCCGGGTATAGCAA-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
14327944 TAGTCACTAGCACAAATG
65 TAGTCACTAGCACAAATG
* * * * *
14327962 CCTTCGGGACTTAGCCCGGATATAG-GA-ACTCGCACAAATGCCTTCTGGACTTAGCCCAGATAT
1 CCTTCAGGACTTAGCCCGGGTATAGCAATACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
14328025 CATCCGAATA
Statistics
Matches: 213, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
79 13 0.06
80 46 0.22
81 1 0.00
82 1 0.00
83 152 0.71
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (82 bp):
CCTTCAGGACTTAGCCCGGGTATAGCAATACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGTCACTAGCACAAATG
Found at i:14327958 original size:123 final size:121
Alignment explanation
Indices: 14327747--14328024 Score: 364
Period size: 123 Copynumber: 2.3 Consensus size: 121
14327737 ATAGCAATTC
*
14327747 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAGCC
* * **
14327812 CGGGTATAGCAACTACTCACACAAATGCCTTCGGGACTTTGCCCGGATATAGTCACTA
66 CGGATATAGCAACTA--CACACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTA
* *
14327870 GCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGCCTTCGGGACTT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGCCTTCAGGACTT
* * *
14327934 CGCCCGGATATAGTC-ACTA-GCACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTC
62 AGCCCGGATATAG-CAACTACACACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTA
* *
14327993 GCACAAATGCCTTCTGGACTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
14328025 CATCCGAATA
Statistics
Matches: 137, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
122 1 0.01
123 100 0.73
126 35 0.26
127 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (121 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAGCC
CGGATATAGCAACTACACACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTA
Found at i:14333782 original size:22 final size:19
Alignment explanation
Indices: 14333757--14333804 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 19
14333747 TACCGTTTTG
14333757 ATTAAATTCTTGTCAAAAAATA
1 ATTAAATT-TT-T-AAAAAATA
*
14333779 ATT-AATTTTTATAAAATA
1 ATTAAATTTTTAAAAAATA
14333797 ATTAAATT
1 ATTAAATT
14333805 ATACTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 10 0.42
19 5 0.21
20 2 0.08
21 4 0.17
22 3 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (19 bp):
ATTAAATTTTTAAAAAATA
Found at i:14338381 original size:70 final size:70
Alignment explanation
Indices: 14338239--14338425 Score: 178
Period size: 70 Copynumber: 2.7 Consensus size: 70
14338229 TATTGCTGGT
* * * * * * * * *
14338239 TAACTATTTTGGAGGCCGTAATATTGAATTAGCAAGCCTGAAGTGTATAGTTGGCAGCTTGAGCT
1 TAACAATTTTAGAAGCCGCAATATTGAATTAACAAGCCTTAAGAGTATAGTTGGCAACTTAAGCT
*
14338304 TTCGC
66 GTCGC
* ** * ** * *
14338309 TAACTATTTTAGGGGCTGGGATATTGAATTAACGAGCCTTAAGAGTATAGTTGGGAACTTAAGCT
1 TAACAATTTTAGAAGCCGCAATATTGAATTAACAAGCCTTAAGAGTATAGTTGGCAACTTAAGCT
14338374 CGT-GC
66 -GTCGC
* *
14338379 TAACAATTTTATAAGCCGCAATATTGAATCAACAAGCCTTAAGAGTA
1 TAACAATTTTAGAAGCCGCAATATTGAATTAACAAGCCTTAAGAGTA
14338426 CAGCTGAGAG
Statistics
Matches: 94, Mismatches: 22, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
70 93 0.99
71 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (70 bp):
TAACAATTTTAGAAGCCGCAATATTGAATTAACAAGCCTTAAGAGTATAGTTGGCAACTTAAGCT
GTCGC
Found at i:14340243 original size:9 final size:9
Alignment explanation
Indices: 14340207--14340493 Score: 74
Period size: 9 Copynumber: 30.7 Consensus size: 9
14340197 TTAAAATGTT
14340207 TAAAAAATCA
1 TAAAAAAT-A
*
14340217 TAATAAATTA
1 TAA-AAAATA
*
14340227 TCAAAAAT-
1 TAAAAAATA
14340235 TAGAAAAATA
1 TA-AAAAATA
14340245 TAAAAAATA
1 TAAAAAATA
*
14340254 T--TAAATA
1 TAAAAAATA
*
14340261 TGAGAAAATA
1 T-AAAAAATA
*
14340271 TAAAAATTGA
1 TAAAAAAT-A
* *
14340281 TATAAACT-
1 TAAAAAATA
**
14340289 TAAAATTTA
1 TAAAAAATA
14340298 -AAAAAAT-
1 TAAAAAATA
14340305 TAAAAAAT-
1 TAAAAAATA
14340313 TAAAAAAATA
1 T-AAAAAATA
* * *
14340323 TTAAAATTC
1 TAAAAAATA
*
14340332 TAATAAAT-
1 TAAAAAATA
14340340 TATAAAAATA
1 TA-AAAAATA
*
14340350 TATAAAAT-
1 TAAAAAATA
14340358 TAACAAAACATA
1 T-A-AAAA-ATA
* *
14340370 TTTAAAATATT
1 --TAAAAAATA
***
14340381 TAAATTTTTA
1 TAAA-AAATA
14340391 TAAAAACATA
1 TAAAAA-ATA
**
14340401 TTAAAATTCTA
1 -TAAAA-AATA
14340412 TAAAAAATCA
1 TAAAAAAT-A
*
14340422 -AAAAATTA
1 TAAAAAATA
14340430 TAAAAAATA
1 TAAAAAATA
14340439 TATAAAAATA
1 TA-AAAAATA
* *
14340449 TTAAAATTGA
1 TAAAAAAT-A
*
14340459 TATAAAAT-
1 TAAAAAATA
14340467 TATAAAAATA
1 TA-AAAAATA
14340477 TAAAAAAATCA
1 T-AAAAAAT-A
14340488 TAAAAA
1 TAAAAA
14340494 CTTGAATTGG
Statistics
Matches: 202, Mismatches: 44, Indels: 62
0.66 0.14 0.20
Matches are distributed among these distances:
7 6 0.03
8 25 0.12
9 81 0.40
10 67 0.33
11 18 0.09
12 3 0.01
13 1 0.00
14 1 0.00
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (9 bp):
TAAAAAATA
Found at i:14340328 original size:17 final size:16
Alignment explanation
Indices: 14340288--14340330 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
14340278 TGATATAAAC
14340288 TTAAAATTTAAAAAAAT
1 TTAAAA-TTAAAAAAAT
*
14340305 TAAAAAATTAAAAAAAT
1 T-TAAAATTAAAAAAAT
14340322 ATTAAAATT
1 -TTAAAATT
14340331 CTAATAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TTAAAATTAAAAAAAT
Found at i:14340353 original size:10 final size:10
Alignment explanation
Indices: 14340296--14340493 Score: 93
Period size: 10 Copynumber: 20.6 Consensus size: 10
14340286 ACTTAAAATT
*
14340296 TAAAAAAAT-
1 TAAAAATATA
14340305 TAAAAA-AT-
1 TAAAAATATA
*
14340313 TAAAAAAATA
1 TAAAAATATA
* *
14340323 TTAAAAT-TC
1 TAAAAATATA
14340332 TAATAAAT-TA
1 TAA-AAATATA
14340342 TAAAAATATA
1 TAAAAATATA
*
14340352 TAAAATTA-A
1 TAAAAATATA
*
14340361 CAAAACATAT-
1 TAAAA-ATATA
* *
14340371 TTAAAATATT
1 TAAAAATATA
** *
14340381 TAAATTTTTA
1 TAAAAATATA
*
14340391 TAAAAACATA
1 TAAAAATATA
* *
14340401 TTAAAATTCTA
1 -TAAAAATATA
14340412 TAAAAA-ATCA
1 TAAAAATAT-A
14340422 -AAAAAT-TA
1 TAAAAATATA
14340430 TAAAAAATATA
1 T-AAAAATATA
14340441 TAAAAATAT-
1 TAAAAATATA
*
14340450 TAAAATTGATA
1 TAAAAAT-ATA
14340461 T-AAAAT-TA
1 TAAAAATATA
14340469 TAAAAATATA
1 TAAAAATATA
14340479 -AAAAA-ATCA
1 TAAAAATAT-A
14340488 TAAAAA
1 TAAAAA
14340494 CTTGAATTGG
Statistics
Matches: 144, Mismatches: 26, Indels: 37
0.70 0.13 0.18
Matches are distributed among these distances:
8 14 0.10
9 48 0.33
10 71 0.49
11 11 0.08
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.31
Consensus pattern (10 bp):
TAAAAATATA
Found at i:14340357 original size:18 final size:18
Alignment explanation
Indices: 14340221--14340493 Score: 100
Period size: 19 Copynumber: 14.7 Consensus size: 18
14340211 AAATCATAAT
*
14340221 AAATTATCAAAAAT-TAGA
1 AAATTAT-AAAAATATATA
* *
14340239 AAAATATAAAAA-ATATT
1 AAATTATAAAAATATATA
14340256 AAA-TATGAGAAAATATA-A
1 AAATTAT-A-AAAATATATA
* *
14340274 AAATTGATATAAA-CT-TA
1 AAATT-ATAAAAATATATA
* *
14340291 AAATT-TAAAAAAATTAAA
1 AAATTATAAAAATA-TATA
*
14340309 AAATTAAAAAAATAT-TA
1 AAATTATAAAAATATATA
*
14340326 AAATTCTAATAAAT-TATA
1 AAATTATAA-AAATATATA
* *
14340344 AAAATATATAAAAT-TAACA
1 AAATTATA-AAAATAT-ATA
* * *
14340363 AAACATATTTAAAATATTTA
1 AAA-TTA-TAAAAATATATA
* *
14340383 AATTTTTATAAAAACATATTA
1 AA--ATTATAAAAATATA-TA
*
14340404 AAATTCTATAAAAA-ATCAAA
1 AAA-T-TATAAAAATAT-ATA
14340424 AAATTATAAAAAATATATA
1 AAATTAT-AAAAATATATA
* *
14340443 AAAATATTAAAATTGATATA
1 AAATTA-TAAAAAT-ATATA
*
14340463 AAATTATAAAAATATAAAA
1 AAATTATAAAAATAT-ATA
*
14340482 AAATCATAAAAA
1 AAATTATAAAAA
14340494 CTTGAATTGG
Statistics
Matches: 192, Mismatches: 34, Indels: 57
0.68 0.12 0.20
Matches are distributed among these distances:
15 5 0.03
16 3 0.02
17 28 0.15
18 45 0.23
19 54 0.28
20 40 0.21
21 17 0.09
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (18 bp):
AAATTATAAAAATATATA
Found at i:14340634 original size:16 final size:16
Alignment explanation
Indices: 14340610--14340648 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
14340600 AATCAAATTT
*
14340610 TTTTA-TTTTTAATAC
1 TTTTATTTTTTAAAAC
*
14340625 TTTTATTTTTTAAAAG
1 TTTTATTTTTTAAAAC
14340641 TTTTATTT
1 TTTTATTT
14340649 AATTGAACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTATTTTTTAAAAC
Found at i:14340918 original size:21 final size:23
Alignment explanation
Indices: 14340894--14340941 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
14340884 AAATTATATA
*
14340894 TTAAAT-ATATTT-TTTTTATTT
1 TTAAATCATATTTAATTTTATTT
14340915 TT-AATCATATTTACATTTTATTT
1 TTAAATCATATTTA-ATTTTATTT
14340938 TTAA
1 TTAA
14340942 TTTTAGTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 3 0.14
21 8 0.36
23 10 0.45
24 1 0.05
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (23 bp):
TTAAATCATATTTAATTTTATTT
Found at i:14340961 original size:28 final size:29
Alignment explanation
Indices: 14340906--14340964 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
14340896 AAATATATTT
* *
14340906 TTTTTATTTTTAATCATATTTACATTTTA
1 TTTTTAATTTTAATCATAATTACATTTTA
* *
14340935 TTTTTAATTTTAGT-ATAATTACTTTTTA
1 TTTTTAATTTTAATCATAATTACATTTTA
14340963 TT
1 TT
14340965 ATATTTTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (29 bp):
TTTTTAATTTTAATCATAATTACATTTTA
Found at i:14341472 original size:19 final size:18
Alignment explanation
Indices: 14341448--14341508 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 18
14341438 TGTCCTATTC
14341448 AATTTTAATTATTTTTTAT
1 AATTTTAA-TATTTTTTAT
*
14341467 AATTTTTAA-ATTTTATAT
1 AA-TTTTAATATTTTTTAT
14341485 GAATTTTAATATTTTTTAT
1 -AATTTTAATATTTTTTAT
14341504 -ATTTT
1 AATTTT
14341509 CTTTGCAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 5 0.14
18 14 0.38
19 12 0.32
20 6 0.16
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (18 bp):
AATTTTAATATTTTTTAT
Found at i:14341478 original size:8 final size:9
Alignment explanation
Indices: 14341460--14341692 Score: 73
Period size: 9 Copynumber: 24.3 Consensus size: 9
14341450 TTTTAATTAT
14341460 TTTTTATAA
1 TTTTTATAA
14341469 TTTTTA-AA
1 TTTTTATAA
14341477 TTTTATATGAA
1 TTTT-TAT-AA
* *
14341488 TTTTAATAT
1 TTTTTATAA
14341497 TTTTTAT-A
1 TTTTTATAA
*
14341505 TTTTCTTTGCAA
1 TTTT-TAT--AA
**
14341517 TTTTTATTC
1 TTTTTATAA
*
14341526 TTTTTAAGAA
1 TTTTT-ATAA
* *
14341536 TTCTAATAAA
1 TTTTTAT-AA
*
14341546 TTTTTTTAA
1 TTTTTATAA
14341555 -TTTTA-AA
1 TTTTTATAA
14341562 TATTTTAAATAA
1 T-TTTT--ATAA
*
14341574 GTTTTACTAA
1 TTTTTA-TAA
* *
14341584 TTTAATAAAA
1 TTT-TTATAA
14341594 TTTTTAATAA
1 TTTTT-ATAA
*
14341604 TTTTAATAA
1 TTTTTATAA
*
14341613 TTTTAATAA
1 TTTTTATAA
*
14341622 TTTATTGT-A
1 TTT-TTATAA
14341631 TTTTTATAA
1 TTTTTATAA
* *
14341640 -TATTATAGG
1 TTTTTATA-A
*
14341649 TTTTTATTACT
1 TTTTTA-TA-A
14341660 TTTTTAATAA
1 TTTTT-ATAA
*
14341670 TTTTAATAA
1 TTTTTATAA
14341679 TTTTGTATCAA
1 TTTT-TAT-AA
14341690 TTT
1 TTT
14341693 CAATATTTTT
Statistics
Matches: 163, Mismatches: 36, Indels: 48
0.66 0.15 0.19
Matches are distributed among these distances:
7 2 0.01
8 23 0.14
9 60 0.37
10 41 0.25
11 29 0.18
12 8 0.05
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:14341572 original size:29 final size:28
Alignment explanation
Indices: 14341527--14341624 Score: 83
Period size: 29 Copynumber: 3.4 Consensus size: 28
14341517 TTTTTATTCT
* **
14341527 TTTTAAGAATTCT-AATAAATTTTTTTAA
1 TTTTAA-AATTTTAAATAAATTTTAATAA
* *
14341555 TTTTAAATATTTTAAATAAGTTTTACTAA
1 TTTTAAA-ATTTTAAATAAATTTTAATAA
*
14341584 TTTAATAAAATTTTTAAT-AATTTTAATAA
1 TTT--TAAAATTTTAAATAAATTTTAATAA
14341613 TTTTAATAATTT
1 TTTTAA-AATTT
14341625 ATTGTATTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
27 4 0.07
28 15 0.26
29 27 0.47
30 8 0.14
31 4 0.07
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (28 bp):
TTTTAAAATTTTAAATAAATTTTAATAA
Found at i:14341603 original size:30 final size:31
Alignment explanation
Indices: 14341558--14341621 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
14341548 TTTTTAATTT
*
14341558 TAAATATTTTAAATAAGTTTTACTAA-TTTAA
1 TAAATATTTTAAATAA-TTTTAATAATTTTAA
*
14341589 TAAA-ATTTTTAATAATTTTAATAATTTTAA
1 TAAATATTTTAAATAATTTTAATAATTTTAA
14341619 TAA
1 TAA
14341622 TTTATTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 8 0.27
30 18 0.60
31 4 0.13
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (31 bp):
TAAATATTTTAAATAATTTTAATAATTTTAA
Found at i:14342398 original size:3 final size:3
Alignment explanation
Indices: 14342390--14342422 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
14342380 TTTCGGTGAT
14342390 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14342423 GTAGACCTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14343280 original size:21 final size:20
Alignment explanation
Indices: 14343242--14343282 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
14343232 CTAAAAATTA
*
14343242 TAAAAATTCAAAAAAAAACT
1 TAAAAAATCAAAAAAAAACT
14343262 TAAAAAATCATAAATAAAAAC
1 TAAAAAATCA-AAA-AAAAAC
14343283 CCATAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 3 0.17
22 6 0.33
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAAAAATCAAAAAAAAACT
Found at i:14343280 original size:22 final size:23
Alignment explanation
Indices: 14343233--14343282 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
14343223 ACAATAAATC
14343233 TAAAAA-TTATAAAAATTCAAAA
1 TAAAAACTTATAAAAATTCAAAA
14343255 -AAAAACTTA-AAAAA-TCATAAA
1 TAAAAACTTATAAAAATTCA-AAA
14343276 TAAAAAC
1 TAAAAAC
14343283 CCATAATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 3 0.12
21 13 0.52
22 9 0.36
ACGTcount: A:0.70, C:0.08, G:0.00, T:0.22
Consensus pattern (23 bp):
TAAAAACTTATAAAAATTCAAAA
Found at i:14349750 original size:20 final size:21
Alignment explanation
Indices: 14349725--14349764 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14349715 CACTTGAAGC
14349725 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
14349745 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
14349765 CCATTATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.30, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:14351386 original size:23 final size:23
Alignment explanation
Indices: 14351360--14351403 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
14351350 CTCGATATGC
*
14351360 ATTCTTACAATCA-CAATTCAAAA
1 ATTCATACAAT-ATCAATTCAAAA
*
14351383 ATTCATGCAATATCAATTCAA
1 ATTCATACAATATCAATTCAA
14351404 TTATACATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.06
23 17 0.94
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.32
Consensus pattern (23 bp):
ATTCATACAATATCAATTCAAAA
Found at i:14359459 original size:47 final size:46
Alignment explanation
Indices: 14359302--14359661 Score: 206
Period size: 47 Copynumber: 7.7 Consensus size: 46
14359292 TGATTTCTGT
* * * * * **
14359302 GCCAGTGTAAGACGTGTCTGGAACATGCTTCGGCCACATTATGAG-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG-CATAAGATGAGTA
* * * *
14359348 GCTAGTGTAAGACCATGTCTGGGGCATGGCATC-GACATCCAA-ACGAG-G
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CAT--AAGATGAGTA
* **
14359396 GCTAGTGTAAGACATGTCTGGGACATGCATCAGTCATACTATG-GTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG-CATAAGATGAGTA
* *
14359442 GCCAGTGTAAGACCATGTCTGGGACATGGCACCAGCAAAGAGATGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATA-AGATGAGTA
* * *
14359490 GCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGACAGA-GA-TA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCAT--A-AGATGAGTA
* * * *
14359537 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGC-TAAGA-GTTGT-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCATAAGATG-AGTA
* * * *
14359581 GCTAGTGTAAGATATGTCTAGGACATGCATCAGCACCCGT-ATATGAG-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCA----TAAGATGAGTA
14359629 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
14359662 GGCAATATAT
Statistics
Matches: 248, Mismatches: 41, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
43 4 0.02
44 29 0.12
45 3 0.01
46 36 0.15
47 95 0.38
48 59 0.24
49 17 0.07
50 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCATAAGATGAGTA
Found at i:14359470 original size:94 final size:91
Alignment explanation
Indices: 14359305--14359662 Score: 281
Period size: 94 Copynumber: 3.8 Consensus size: 91
14359295 TTTCTGTGCC
* * * * * * * *
14359305 AGTGTAAGACGTGTCTGGAACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGTCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
*
14359370 GGCATGGCATCGACATCCAAACGAGGGCT
66 GACATGGCATCGACAT--AAA-GAGGGCT
14359399 AGTGTAAGACATGTCTGGGACATGCATCAGTCATACTATG-GTAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGTCATACTATGAG-AGCCAGTGTAAGACCATGTCTG
* *
14359463 GGACATGGCA-CCAGCA-AAGAGATGAGTGCC
65 GGACATGGCATCGA-CATAA-AGA-G-G-GCT
* * * *
14359493 AGTGTAAGACATGTCTGGGACATGTATCGGCCTC-GAC-A-GAGATAGCCAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAG--TCATACTATGAG--AGCCAGTGTAAGACCATGT
* *
14359554 CTGGGACA-CGCATCGGC-T-AAGAGTTGTGCT
62 CTGGGACATGGCATCGACATAAAGAG--G-GCT
* *
14359584 AGTGTAAGATATGTCTAGGACATGCATCAG-CACCCGTA-TATGAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGTCA----TACTATGAGAGCCAGTGTAAGACCATGT
14359647 CTGGGACATGGCATCG
62 CTGGGACATGGCATCG
14359663 GCAATATATC
Statistics
Matches: 215, Mismatches: 27, Indels: 44
0.75 0.09 0.15
Matches are distributed among these distances:
88 1 0.00
90 1 0.00
91 37 0.17
92 16 0.07
93 23 0.11
94 119 0.55
95 16 0.07
96 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGTCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATAAAGAGGGCT
Found at i:14361980 original size:49 final size:49
Alignment explanation
Indices: 14361759--14362264 Score: 786
Period size: 47 Copynumber: 10.6 Consensus size: 49
14361749 CCCTTCAGGA
* * * ***
14361759 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACCCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14361806 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14361853 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14361900 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14361947 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14361996 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14362045 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14362092 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14362141 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14362187 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14362236 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
14362265 TATTCAAACA
Statistics
Matches: 430, Mismatches: 20, Indels: 16
0.92 0.04 0.03
Matches are distributed among these distances:
46 11 0.03
47 213 0.50
48 36 0.08
49 170 0.40
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14361997 original size:96 final size:95
Alignment explanation
Indices: 14361759--14362264 Score: 784
Period size: 96 Copynumber: 5.3 Consensus size: 95
14361749 CCCTTCAGGA
* * * * *** * *
14361759 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACCCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
14361823 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
14361853 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
14361917 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* *
14361947 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
* *
14362012 ACACTTTCACATTCATCACATTGGCCATTCGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
14362045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
14362110 ACTTTCACATTCATCACATTGGCCATTCGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
14362141 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
14362205 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
14362236 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
14362265 TATTCAAACA
Statistics
Matches: 387, Mismatches: 19, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
94 92 0.24
95 57 0.15
96 174 0.45
97 19 0.05
98 45 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14365585 original size:40 final size:40
Alignment explanation
Indices: 14365528--14365888 Score: 528
Period size: 40 Copynumber: 9.1 Consensus size: 40
14365518 CGAATACACG
* * * * *
14365528 TCACCAGCATGATTGCTCTTCGGGACCTAGACCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
14365568 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* * *
14365608 TTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14365648 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14365688 TCACTAGCAAGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14365728 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14365768 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14365808 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14365848 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14365887 TC
1 TC
14365889 GTCGAGACCT
Statistics
Matches: 292, Mismatches: 27, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 5 0.02
40 285 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:14368231 original size:38 final size:42
Alignment explanation
Indices: 14368179--14368604 Score: 321
Period size: 49 Copynumber: 9.0 Consensus size: 42
14368169 ATATACACTT
14368179 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
14368223 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
14368270 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* *
14368319 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* *
14368368 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
14368415 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* * * *
14368464 CTTTGACATTCATCACATTGGCCATTCGACCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
14368511 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
*
14368560 CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA
14368605 TACACTTTCA
Statistics
Matches: 358, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 175 0.49
49 183 0.51
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (42 bp):
TCACATTATCACATCGGCCATTAGGCCTTATCACATATATAA
Found at i:14368333 original size:49 final size:49
Alignment explanation
Indices: 14368112--14368618 Score: 777
Period size: 47 Copynumber: 10.6 Consensus size: 49
14368102 CCCTTCGGGA
* * * * *
14368112 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14368159 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14368206 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14368253 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14368300 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14368349 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14368398 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
14368445 CTTATCACATATATATACACTTTGACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14368494 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14368541 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14368590 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
14368619 TATTCAAATA
Statistics
Matches: 428, Mismatches: 24, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 223 0.52
49 204 0.48
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14368350 original size:96 final size:95
Alignment explanation
Indices: 14368112--14368618 Score: 784
Period size: 96 Copynumber: 5.3 Consensus size: 95
14368102 CCCTTCGGGA
* * * * * * * *
14368112 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
*
14368176 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATTGGCCATTAGGC
*
14368206 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
*
14368270 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATTGGCCATTAGGC
* *
14368300 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
*
14368365 ACACTTTCACATTCATCACATTGGCCATTCGGC
63 ACACTTTCACATTCATCACATTGGCCATTAGGC
14368398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* * *
14368463 ACTTTGACATTCATCACATTGGCCATTCGAC
65 ACTTTCACATTCATCACATTGGCCATTAGGC
14368494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
14368559 ACTTTCACATTCATCACATTGGCCATTAGGC
65 ACTTTCACATTCATCACATTGGCCATTAGGC
14368590 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
14368619 TATTCAAATA
Statistics
Matches: 386, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
94 93 0.24
96 229 0.59
98 64 0.17
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATTGGCCATTAGGC
Found at i:14371826 original size:24 final size:24
Alignment explanation
Indices: 14371794--14371843 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
14371784 AAAGTAATGT
14371794 GCCAGTTTCCACAGAAGGGACTGC
1 GCCAGTTTCCACAGAAGGGACTGC
**
14371818 GCCAGTTTCCGTAGAAGGGACTGC
1 GCCAGTTTCCACAGAAGGGACTGC
14371842 GC
1 GC
14371844 TAGAGAGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.28, G:0.32, T:0.18
Consensus pattern (24 bp):
GCCAGTTTCCACAGAAGGGACTGC
Found at i:14377741 original size:47 final size:44
Alignment explanation
Indices: 14377634--14377994 Score: 196
Period size: 47 Copynumber: 7.7 Consensus size: 44
14377624 TTTCTATGCC
* * *
14377634 AGTGTAAGACATGTCTGGAACATGCTTCGGCCA-C-AGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CATCTAG-A-GAG-GCT
* * *
14377680 AATGTACGACCATGTCTGGGGCATGGCATCGGCATCTAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCTAGA-GA-GGCT
* *
14377728 AGTGTAAGACATGTCTGGGACATGCATCTGCAATACTATGATA-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-AT-CTA-GAGAGGCT
* * *
14377774 AGTGTAAGACCATGTCTGGGACATGGCACCGGCA-CAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATC-TAGA-GAG-GCT
* * * *
14377822 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATC--TAGAGA-GGCT
* ** * * *
14377869 AGTGTAAGACGTGTCTGGGACACACATCAGC-T-AAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCTAGAG-AG-GCT
* * * *
14377913 AGTGTAAGACATGTCTGGGACATGTATCAGCACGCGTATATGAGCAGC-
1 AGTGTAAGACATGTCTGGGACATGCATCGGCA-TC-TAGA-GAG--GCT
14377961 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
14377995 ATATATCCCA
Statistics
Matches: 248, Mismatches: 40, Indels: 50
0.73 0.12 0.15
Matches are distributed among these distances:
43 4 0.02
44 29 0.12
45 3 0.01
46 36 0.15
47 91 0.37
48 56 0.23
49 22 0.09
50 7 0.03
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCTAGAGAGGCT
Found at i:14377799 original size:94 final size:93
Alignment explanation
Indices: 14377634--14377994 Score: 326
Period size: 94 Copynumber: 3.9 Consensus size: 93
14377624 TTTCTATGCC
* * * * * * * *
14377634 AGTGTAAGACATGTCTGGAACATGCTTCGGCCACAGTATGAGAGCCAATGTACGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAATACTATGATAGCCAGTGTAAGACCATGTCTGG
* * *
14377699 GGCATGGCATCGGCATCTAGACGAGGGCT
66 GACATGGCATCGGCATCAAGA-GAGTGCT
* *
14377728 AGTGTAAGACATGTCTGGGACATGCATCTGCAATACTATGATAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAATACTATGATAGCCAGTGTAAGACCATGTCTGG
* *
14377793 GACATGGCACCGGCA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATCA-AGA-GAGTGCT
* * *
14377822 AGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGAC-AGAGATAGCCAGTGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAAT--ACTA-TGATAGCCAGTGTAAGACCATGTC
** * *
14377884 TGGGACA-CACATCAGC-T-AAGAGTTGTGCT
63 TGGGACATGGCATCGGCATCAAGAG-AGTGCT
* * **
14377913 AGTGTAAGACATGTCTGGGACATGTATCAGC-ACGCGTAT-ATGAGCAGCAGTGTAAGACCATGT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAATAC-TATGAT-AGC--CAGTGTAAGACCATGT
14377976 CTGGGACATGGCATCGGCA
62 CTGGGACATGGCATCGGCA
14377995 ATATATCCCA
Statistics
Matches: 216, Mismatches: 37, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
89 3 0.01
90 4 0.02
91 37 0.17
92 11 0.05
93 19 0.09
94 125 0.58
95 17 0.08
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCAATACTATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAAGAGAGTGCT
Found at i:14377887 original size:141 final size:137
Alignment explanation
Indices: 14377634--14377994 Score: 383
Period size: 141 Copynumber: 2.6 Consensus size: 137
14377624 TTTCTATGCC
* * * *
14377634 AGTGTAAGACATGTCTGGAACATGCTTCGGCCACAG-TATGAGAGCCAATGTACGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACAGATATGAGAGCCAGTGTAAGACCATGTCTG
* * * ** * *
14377698 GGGCATGGCATCGGCATCTAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCTGC-AAT
65 GGACATGGCATCGGCA-CTAGACGAGAGCCAGTGTAAGACATGTCTGGGACACACATCAGCTAAG
14377762 ACTATGATAGCT
129 ACT-TG-T-GCT
* * *
14377774 AGTGTAAGACCATGTCTGGGACATGGCACCGGCACAGAGATGAGTGCCAGTGTAAGA-CATGTCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGATATGAGAGCCAGTGTAAGACCATGTCT
* *
14377838 GGGACAT-GCATCGGC-CTCGACAGAGATAGCCAGTGTAAGACGTGTCTGGGACACACATCAGCT
64 GGGACATGGCATCGGCACTAGAC-GAG--AGCCAGTGTAAGACATGTCTGGGACACACATCAGCT
*
14377901 AAGAGTTGTGCT
126 AAGACTTGTGCT
* * *
14377913 AGTGTAAGACATGTCTGGGACATGTATCAGCACGCGTATATGAGCAG-CAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAC-AG-ATATGAG-AGCCAGTGTAAGACCATGTC
14377977 TGGGACATGGCATCGGCA
63 TGGGACATGGCATCGGCA
14377995 ATATATCCCA
Statistics
Matches: 185, Mismatches: 23, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
137 7 0.04
138 20 0.11
139 31 0.17
140 33 0.18
141 70 0.38
142 24 0.13
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (137 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACAGATATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCACTAGACGAGAGCCAGTGTAAGACATGTCTGGGACACACATCAGCTAAGAC
TTGTGCT
Found at i:14382527 original size:34 final size:34
Alignment explanation
Indices: 14382457--14382532 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
14382447 GTATTGTTAC
* * *
14382457 TGATACTGTAATAGGCTAAGGCCCACACTGATAT
1 TGATACTGTAATAGGCTAAGACCCACACTAAAAT
*
14382491 TGATACTGTAATGGGCTAAGACCCTA-ACTAAAAT
1 TGATACTGTAATAGGCTAAGACCC-ACACTAAAAT
14382525 TGA-ACTGT
1 TGATACTGT
14382533 TATTGAATTG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 5 0.14
34 31 0.84
35 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (34 bp):
TGATACTGTAATAGGCTAAGACCCACACTAAAAT
Found at i:14389380 original size:43 final size:43
Alignment explanation
Indices: 14389332--14389481 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 43
14389322 ATTACCGAGA
*
14389332 TGTGATTACATATAAGACCATGTTTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
** * * *
14389375 TGTGATTATGTGTAATACCATGTTAGGGGCATTGGCATCAT-TA-
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCAT--TGTAT
* * * * * *
14389418 TATGATTTCGTGTAGGACCATGTCTGGGACATTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
*
14389460 ATGTGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
14389482 ATCTAGGATA
Statistics
Matches: 82, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.01
43 78 0.95
44 2 0.02
45 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
Found at i:14406813 original size:46 final size:45
Alignment explanation
Indices: 14406744--14406917 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
14406734 GTAACCCACC
*
14406744 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
14406789 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
14406839 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
14406882 CCGTAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
14406918 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 3 0.03
46 60 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:14406858 original size:93 final size:93
Alignment explanation
Indices: 14406751--14406921 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14406741 ACCCCTAAGT
* *
14406751 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14406816 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
14406844 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCGTAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14406909 CGAGTTCGGATGC
66 CGAGTTCGGATGC
14406922 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:14409943 original size:29 final size:28
Alignment explanation
Indices: 14409907--14409984 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
14409897 TCATGAGATT
14409907 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
14409937 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
14409964 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
14409985 GATTATTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:14410202 original size:174 final size:174
Alignment explanation
Indices: 14409937--14410438 Score: 923
Period size: 174 Copynumber: 2.9 Consensus size: 174
14409927 AAATTGTACA
* * *
14409937 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAACACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
14410002 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
14410067 TTTTGGACAGCGGAATAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
14410111 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
14410176 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
14410241 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
14410285 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGAACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
14410350 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
14410415 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
14410439 ACCTTGAGTT
Statistics
Matches: 317, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 317 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:14426761 original size:21 final size:21
Alignment explanation
Indices: 14426735--14426802 Score: 86
Period size: 20 Copynumber: 3.3 Consensus size: 21
14426725 TCACTTCGTT
14426735 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
14426756 TC-TTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
14426776 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
14426797 -CTTTTT
1 TCTTTTT
14426803 TCTTTGTGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
20 25 0.61
21 16 0.39
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.54
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:14429195 original size:18 final size:18
Alignment explanation
Indices: 14429162--14429255 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
14429152 AAGGTTTTCT
14429162 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
14429177 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
14429195 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
14429213 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
14429231 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
14429249 TATTGAT
1 TATTGAT
14429256 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:14437526 original size:14 final size:14
Alignment explanation
Indices: 14437507--14437534 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14437497 TATATTAGTA
14437507 TTTTCTATTCTATT
1 TTTTCTATTCTATT
14437521 TTTTCTATTCTATT
1 TTTTCTATTCTATT
14437535 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:14437542 original size:6 final size:6
Alignment explanation
Indices: 14437531--14437604 Score: 72
Period size: 6 Copynumber: 13.2 Consensus size: 6
14437521 TTTTCTATTC
*
14437531 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATTAG TATTAG -ATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
14437578 TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG T
14437605 TAGTGATCCC
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
4 4 0.07
5 23 0.39
6 26 0.44
8 6 0.10
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (6 bp):
TATTAG
Found at i:14437557 original size:11 final size:11
Alignment explanation
Indices: 14437532--14437608 Score: 94
Period size: 11 Copynumber: 7.5 Consensus size: 11
14437522 TTTCTATTCT
14437532 ATTAGTATTAG
1 ATTAGTATTAG
14437543 ---AGTATTAG
1 ATTAGTATTAG
**
14437551 ATTAGTATTCT
1 ATTAGTATTAG
14437562 ATTAGTATTAG
1 ATTAGTATTAG
14437573 ATTAGTATTAG
1 ATTAGTATTAG
14437584 -TTAG-ATTAG
1 ATTAGTATTAG
14437593 ATTAGTATTAG
1 ATTAGTATTAG
14437604 -TTAGT
1 ATTAGT
14437609 GATCCCGGCT
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
8 8 0.14
9 5 0.09
10 13 0.23
11 31 0.54
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:14437562 original size:30 final size:30
Alignment explanation
Indices: 14437526--14437604 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 30
14437516 CTATTTTTTC
14437526 TATTCTATTAGTATTAG-AGTATTAGATTAG
1 TATTCTATTAGTATTAGTAGTATTAG-TTAG
14437556 TATTCTATTAGTATTAGATTAGTATTAGTTAG
1 TATTCTATTAGTATTAG--TAGTATTAGTTAG
**
14437588 -ATTAGATTAGTATTAGT
1 TATTCTATTAGTATTAGT
14437605 TAGTGATCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
29 1 0.02
30 17 0.39
31 14 0.32
32 4 0.09
33 8 0.18
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (30 bp):
TATTCTATTAGTATTAGTAGTATTAGTTAG
Found at i:14437576 original size:5 final size:5
Alignment explanation
Indices: 14437546--14437607 Score: 56
Period size: 5 Copynumber: 12.0 Consensus size: 5
14437536 GTATTAGAGT
**
14437546 ATTAG ATTAG TATTCT ATTAG TATTAG ATTAG TATTAG -TTAG ATTAG
1 ATTAG ATTAG -ATTAG ATTAG -ATTAG ATTAG -ATTAG ATTAG ATTAG
14437593 ATTAG TATTAG -TTAG
1 ATTAG -ATTAG ATTAG
14437608 TGATCCCGGC
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
4 8 0.17
5 22 0.46
6 18 0.38
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.47
Consensus pattern (5 bp):
ATTAG
Found at i:14437593 original size:20 final size:21
Alignment explanation
Indices: 14437532--14437608 Score: 108
Period size: 20 Copynumber: 3.8 Consensus size: 21
14437522 TTTCTATTCT
14437532 ATTAGTATTAG--AGTATTAG
1 ATTAGTATTAGTTAGTATTAG
14437551 ATTAGTATTCTA-TTAGTATTAG
1 ATTAGTA-T-TAGTTAGTATTAG
14437573 ATTAGTATTAGTTAG-ATTAG
1 ATTAGTATTAGTTAGTATTAG
14437593 ATTAGTATTAGTTAGT
1 ATTAGTATTAGTTAGT
14437609 GATCCCGGCT
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
19 7 0.13
20 23 0.44
21 7 0.13
22 15 0.29
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (21 bp):
ATTAGTATTAGTTAGTATTAG
Found at i:14453836 original size:32 final size:32
Alignment explanation
Indices: 14453800--14453864 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
14453790 TGTATGCATT
14453800 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
14453832 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
14453864 T
1 T
14453865 GGCAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:14455373 original size:26 final size:26
Alignment explanation
Indices: 14455344--14455396 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14455334 TTTACAGTTT
14455344 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
14455370 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
14455396 T
1 T
14455397 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:14460180 original size:15 final size:16
Alignment explanation
Indices: 14460160--14460189 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14460150 AAAAAATTGT
14460160 TTTTCTT-CTCTCTTC
1 TTTTCTTCCTCTCTTC
14460175 TTTTCTTCCTCTCTT
1 TTTTCTTCCTCTCTT
14460190 TGTAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTCTTCCTCTCTTC
Found at i:14461872 original size:30 final size:30
Alignment explanation
Indices: 14461828--14461885 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
14461818 CTGGGCATTT
*
14461828 CCACGCGGGCTGGCCACACGCCCATGTGAG
1 CCACACGGGCTGGCCACACGCCCATGTGAG
* *
14461858 CCACACGGGTTGGCCACATGCCCATGTG
1 CCACACGGGCTGGCCACACGCCCATGTG
14461886 CCAGTCCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.17, C:0.38, G:0.31, T:0.14
Consensus pattern (30 bp):
CCACACGGGCTGGCCACACGCCCATGTGAG
Found at i:14465918 original size:30 final size:30
Alignment explanation
Indices: 14465882--14465939 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
14465872 TTTTTTTCCT
*
14465882 ACACGGCCTGGA-CACATGAGTGTGTGGAGC
1 ACACGGCCT-GACCACACGAGTGTGTGGAGC
*
14465912 ACACGGCCTGACCACACGGGTGTGTGGA
1 ACACGGCCTGACCACACGAGTGTGTGGA
14465940 ATCTCACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.22, C:0.26, G:0.36, T:0.16
Consensus pattern (30 bp):
ACACGGCCTGACCACACGAGTGTGTGGAGC
Found at i:14466300 original size:9 final size:9
Alignment explanation
Indices: 14466286--14466332 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
14466276 TATACTTATA
14466286 TTTTTAATT
1 TTTTTAATT
14466295 TTTTT-ATAT
1 TTTTTAAT-T
* *
14466304 ATTTTATTT
1 TTTTTAATT
*
14466313 TTTTTATTT
1 TTTTTAATT
14466322 TTTTTAATT
1 TTTTTAATT
14466331 TT
1 TT
14466333 GCTATTTCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 2 0.06
9 29 0.91
10 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTAATT
Found at i:14466303 original size:17 final size:17
Alignment explanation
Indices: 14466281--14466332 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
14466271 ATTCTTATAC
14466281 TTATATTTTTAATTTTT
1 TTATATTTTTAATTTTT
*
14466298 TTATATATTTTATTTTTT
1 TTATAT-TTTTAATTTTT
*
14466316 TTATTTTTTTTAATTTT
1 TTA-TATTTTTAATTTT
14466333 GCTATTTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 6 0.20
18 22 0.73
19 2 0.07
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTATATTTTTAATTTTT
Found at i:14466321 original size:26 final size:24
Alignment explanation
Indices: 14466281--14466332 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 24
14466271 ATTCTTATAC
14466281 TTATATTTTTAATTTTTTTATATATT
1 TTATATTTTTAATTTTTTT-TA-ATT
* *
14466307 TTATTTTTTTTATTTTTTTTAATT
1 TTATATTTTTAATTTTTTTTAATT
14466331 TT
1 TT
14466333 GCTATTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 2 0.08
26 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (24 bp):
TTATATTTTTAATTTTTTTTAATT
Found at i:14466352 original size:20 final size:20
Alignment explanation
Indices: 14466329--14466377 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
14466319 TTTTTTTTAA
*
14466329 TTTTGCTATTTC-TATTTTC
1 TTTTTCTATTTCGTATTTTC
*
14466348 TTTTTCTTTTTCGTATTTTC
1 TTTTTCTATTTCGTATTTTC
*
14466368 TTTTACTATT
1 TTTTTCTATT
14466378 ATCCTTACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.10, C:0.14, G:0.04, T:0.71
Consensus pattern (20 bp):
TTTTTCTATTTCGTATTTTC
Found at i:14466440 original size:7 final size:7
Alignment explanation
Indices: 14466428--14466466 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
14466418 TTATTACTAT
14466428 TTTTTTA
1 TTTTTTA
14466435 TTTTTTA
1 TTTTTTA
14466442 TTTTTTA
1 TTTTTTA
*
14466449 -TTTTTC
1 TTTTTTA
*
14466455 TTTTTTC
1 TTTTTTA
14466462 TTTTT
1 TTTTT
14466467 ATCTTCCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.08, C:0.05, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTA
Found at i:14466458 original size:19 final size:19
Alignment explanation
Indices: 14466436--14466484 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
14466426 ATTTTTTTAT
* *
14466436 TTTTTATTTTTTATTTTTC
1 TTTTTATTTTTTATCTTCC
14466455 TTTTT-TCTTTTTATCTTCC
1 TTTTTAT-TTTTTATCTTCC
14466474 TTTTTAATTTT
1 TTTTT-ATTTT
14466485 GTTTTAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 20 0.80
20 3 0.12
21 1 0.04
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTATTTTTTATCTTCC
Found at i:14466510 original size:13 final size:13
Alignment explanation
Indices: 14466430--14466516 Score: 63
Period size: 13 Copynumber: 6.7 Consensus size: 13
14466420 ATTACTATTT
14466430 TTTTA-TTTTTTA
1 TTTTATTTTTTTA
*
14466442 TTTT-TTATTTTTC
1 TTTTATT-TTTTTA
14466455 TTTT-TTCTTTTTA
1 TTTTATT-TTTTTA
* ** *
14466468 TCTTCCTTTTTAA
1 TTTTATTTTTTTA
* *
14466481 TTTTGTTTTAGTTA
1 TTTTATTTT-TTTA
14466495 TTTTATTTTTTTA
1 TTTTATTTTTTTA
14466508 TTTTATTTT
1 TTTTATTTT
14466517 CTTCAACTTA
Statistics
Matches: 58, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
12 5 0.09
13 42 0.72
14 11 0.19
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:14467086 original size:26 final size:26
Alignment explanation
Indices: 14467050--14467131 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
14467040 TGATAAAAAT
*
14467050 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14467076 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14467102 TGATAATGGGTTAGGTGAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14467128 TGAT
1 TGAT
14467132 GGGCATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14468142 original size:31 final size:31
Alignment explanation
Indices: 14468098--14468162 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
14468088 GAAAAATTTG
*
14468098 TTAATGAGTTGCTTATTAATTTCTTATAAGC
1 TTAATGAGCTGCTTATTAATTTCTTATAAGC
* *
14468129 TTAATGTGCTGCTTATTGATTTCTTATAAGC
1 TTAATGAGCTGCTTATTAATTTCTTATAAGC
14468160 TTA
1 TTA
14468163 CTCTGATCTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (31 bp):
TTAATGAGCTGCTTATTAATTTCTTATAAGC
Found at i:14468809 original size:27 final size:27
Alignment explanation
Indices: 14468769--14468846 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
14468759 AGGAAGCGTC
14468769 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTATGCCACAA-TATCTGTAT
*
14468796 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACAATATCTGTAT
* *
14468823 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTAT-GCCACAATATCTG
14468847 GCAACCTCGC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
26 7 0.15
27 39 0.85
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATATCTGTAT
Found at i:14473679 original size:26 final size:26
Alignment explanation
Indices: 14473650--14473731 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
14473640 TGATAAAAAT
*
14473650 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14473676 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14473702 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14473728 TGAT
1 TGAT
14473732 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14475359 original size:27 final size:27
Alignment explanation
Indices: 14475319--14475396 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
14475309 AGGAAGCGTC
14475319 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTATGCCACAA-TATCTGTAT
*
14475346 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACAATATCTGTAT
* *
14475373 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTAT-GCCACAATATCTG
14475397 GCAACCTCGC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
26 7 0.15
27 39 0.85
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATATCTGTAT
Found at i:14476688 original size:19 final size:19
Alignment explanation
Indices: 14476663--14476761 Score: 141
Period size: 19 Copynumber: 5.3 Consensus size: 19
14476653 ATAATCTTCA
14476663 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
14476682 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14476701 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14476718 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
14476736 ATGATATACAATCTTGAAGAT
1 ATGATATGCAATCTT--AGAT
14476757 ATGAT
1 ATGAT
14476762 TTTGTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
17 16 0.22
18 16 0.22
19 31 0.43
21 9 0.12
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:14476703 original size:14 final size:15
Alignment explanation
Indices: 14476684--14476739 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
14476674 TCTTAGATGT
14476684 GATATG-CAATCTTA
1 GATATGACAATCTTA
14476698 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
14476715 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
14476733 GATATGA
1 GATATGA
14476740 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:14476733 original size:35 final size:36
Alignment explanation
Indices: 14476671--14476762 Score: 132
Period size: 35 Copynumber: 2.5 Consensus size: 36
14476661 CAATGATATG
*
14476671 CAATCTTAGATGTGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGAATA
14476707 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGA-ATA
14476744 CAATCTTGAAGATATGATT
1 CAATCTT--AGATATGATT
14476763 TTGTAATCTT
Statistics
Matches: 51, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 16 0.31
36 15 0.29
37 10 0.20
39 10 0.20
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGAATA
Found at i:14477295 original size:17 final size:17
Alignment explanation
Indices: 14477230--14477295 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
14477220 TCTAAACCAA
*
14477230 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
14477246 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
14477265 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
14477280 TATATATTATATTTTA
1 TATATATTATATTTTA
14477296 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:14477319 original size:26 final size:25
Alignment explanation
Indices: 14477272--14477320 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
14477262 TTATAAATAT
* * *
14477272 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
14477297 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
14477321 TTTATATGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:14479014 original size:12 final size:11
Alignment explanation
Indices: 14478985--14479013 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14478975 CCATTGCTCT
14478985 AAAAAAAGTGA
1 AAAAAAAGTGA
14478996 AAAAAAAGTGA
1 AAAAAAAGTGA
14479007 AAAAAAA
1 AAAAAAA
14479014 ATACATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (11 bp):
AAAAAAAGTGA
Found at i:14488366 original size:8 final size:8
Alignment explanation
Indices: 14488353--14488381 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
14488343 TTTCACTAAT
14488353 ATAATATA
1 ATAATATA
14488361 ATAATATA
1 ATAATATA
14488369 ATAATAT-
1 ATAATATA
14488376 ATAATA
1 ATAATA
14488382 CTTACTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATATA
Found at i:14488367 original size:13 final size:15
Alignment explanation
Indices: 14488349--14488381 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
14488339 TAAATTTCAC
14488349 TAATATAAT-ATA-A
1 TAATATAATAATATA
14488362 TAATATAATAATATA
1 TAATATAATAATATA
14488377 TAATA
1 TAATA
14488382 CTTACTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATATAATAATATA
Found at i:14493152 original size:39 final size:39
Alignment explanation
Indices: 14493068--14493189 Score: 174
Period size: 39 Copynumber: 3.1 Consensus size: 39
14493058 CAAATCCAAT
* *
14493068 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTT-AGCCCGGATATAA
*
14493108 TACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
* *
14493147 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
14493186 CACC
1 CACC
14493190 TGTGACACCC
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 40 0.53
40 35 0.47
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.16
Consensus pattern (39 bp):
CACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
Found at i:14495758 original size:47 final size:47
Alignment explanation
Indices: 14495357--14495731 Score: 669
Period size: 47 Copynumber: 7.9 Consensus size: 47
14495347 GAAATGATAG
14495357 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14495404 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
14495453 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
14495500 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAATGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14495547 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14495594 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14495641 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTTATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14495688 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
14495732 CGACGGGGCC
Statistics
Matches: 314, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 267 0.85
49 47 0.15
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:14495960 original size:37 final size:37
Alignment explanation
Indices: 14495904--14495982 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
14495894 CCGAGCTCTA
* *
14495904 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
14495941 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14495978 AAGAC
1 AAGAC
14495983 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14497884 original size:43 final size:43
Alignment explanation
Indices: 14497836--14497938 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
14497826 TTGGTTTTCA
14497836 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
14497879 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
14497922 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
14497939 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:14497955 original size:29 final size:29
Alignment explanation
Indices: 14497920--14497993 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
14497910 GTTGTGAGAT
* *
14497920 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
14497949 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
14497978 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14497994 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:14498389 original size:40 final size:39
Alignment explanation
Indices: 14498345--14498495 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
14498335 AAGTGACCAT
* * *
14498345 ATCCGGACTAAGATCCGAAG-GCATTGATGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCGAAGAGCATTCATGCGAGTGA-TAA
* **
14498385 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGT-CCGAAGAGCATTCATGCGAGTGATAA
* * *
14498425 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAG-TCCGAAGAGCATTCATGCGAGTGATAA
* * *
14498465 ATCCGTGCTAAATCCCGAAGAGCAATCATGC
1 ATCCGGGCTAAGT-CCGAAGAGCATTCATGC
14498496 TGGTGACGTG
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.02
40 79 0.83
41 14 0.15
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGAGCATTCATGCGAGTGATAA
Found at i:14498442 original size:80 final size:81
Alignment explanation
Indices: 14498306--14498502 Score: 215
Period size: 80 Copynumber: 2.5 Consensus size: 81
14498296 TCGAATGATG
**
14498306 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
*
14498368 TT-GATGCGAGTTACTAAA
65 TTCG-TGCGAGTGA-TAAA
** * *
14498386 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
14498450 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
14498466 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
14498503 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
80 73 0.74
81 19 0.19
82 7 0.07
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:14501857 original size:47 final size:47
Alignment explanation
Indices: 14501791--14502172 Score: 613
Period size: 47 Copynumber: 8.1 Consensus size: 47
14501781 GAAATGATAG
14501791 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14501838 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
14501887 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
14501934 TAAGGCCTAATAGCCGTTGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14501981 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14502028 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14502075 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
14502122 CGGGGCC-AAGAGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14502169 TAAG
1 TAAG
14502173 TCCCGAAGGG
Statistics
Matches: 312, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 2 0.01
47 263 0.84
49 47 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:14502347 original size:37 final size:37
Alignment explanation
Indices: 14502291--14502369 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
14502281 CCGAGCTCTA
* *
14502291 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
14502328 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14502365 AAGAC
1 AAGAC
14502370 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14503773 original size:39 final size:39
Alignment explanation
Indices: 14503719--14503798 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
14503709 GGGGTGTTAC
*
14503719 AACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATAT
1 AACACCAGCACGAATGCCTTCAGGACTTAGCCCGGATAT
14503758 AACACCAGCACGAATGCCTTCAGGACTTAGCCCGGATAT
1 AACACCAGCACGAATGCCTTCAGGACTTAGCCCGGATAT
14503797 AA
1 AA
14503799 TTCTCCATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.31, C:0.30, G:0.21, T:0.17
Consensus pattern (39 bp):
AACACCAGCACGAATGCCTTCAGGACTTAGCCCGGATAT
Found at i:14507470 original size:5 final size:5
Alignment explanation
Indices: 14507444--14507502 Score: 88
Period size: 5 Copynumber: 12.4 Consensus size: 5
14507434 AAAACCCTAA
*
14507444 TTTTC ATTTC -TTTC -TTTC -TTTC TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
14507491 TTTTC TTTTC TT
1 TTTTC TTTTC TT
14507503 CCTTCCCTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
4 12 0.23
5 40 0.77
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:14507597 original size:8 final size:8
Alignment explanation
Indices: 14507586--14507614 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
14507576 TTTTAATAAT
14507586 ATAATATA
1 ATAATATA
14507594 ATAATATA
1 ATAATATA
14507602 ATAATATA
1 ATAATATA
14507610 A-AATA
1 ATAATA
14507615 CTTATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 4 0.19
8 17 0.81
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
ATAATATA
Found at i:14507605 original size:21 final size:21
Alignment explanation
Indices: 14507579--14507626 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
14507569 CTTTAAATTT
*
14507579 TAATAATATAATATAATAATA
1 TAATAATATAAAATAATAATA
* *
14507600 TAATAATATAAAATACTTATA
1 TAATAATATAAAATAATAATA
14507621 TAATAA
1 TAATAA
14507627 GTAATTACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TAATAATATAAAATAATAATA
Found at i:14507610 original size:13 final size:13
Alignment explanation
Indices: 14507579--14507604 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14507569 CTTTAAATTT
14507579 TAATAATATAATA
1 TAATAATATAATA
14507592 TAATAATATAATA
1 TAATAATATAATA
14507605 ATATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATAATATAATA
Found at i:14509051 original size:37 final size:38
Alignment explanation
Indices: 14509010--14509094 Score: 102
Period size: 37 Copynumber: 2.3 Consensus size: 38
14509000 AGCATAAAGT
* * *
14509010 TAAAATAAATTTAAAAT-CTAAGTATAAGAAT-AATAAA
1 TAAAATAAA-ATAAAATAATAAGTAAAAGAATAAATAAA
* *
14509047 TAAAATAAAATAAAATAATTAGTAAAATAATAAATAAA
1 TAAAATAAAATAAAATAATAAGTAAAAGAATAAATAAA
14509085 TAAAATAAAA
1 TAAAATAAAA
14509095 GGGGGTGGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
36 6 0.15
37 19 0.46
38 16 0.39
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (38 bp):
TAAAATAAAATAAAATAATAAGTAAAAGAATAAATAAA
Found at i:14509054 original size:5 final size:5
Alignment explanation
Indices: 14509044--14509094 Score: 50
Period size: 5 Copynumber: 9.6 Consensus size: 5
14509034 TAAGAATAAT
*
14509044 AAATA AAATA AAATA AAATA ATTAGTA AAATA ATAA-A TAAATA AAATA
1 AAATA AAATA AAATA AAATA A--AATA AAATA A-AATA -AAATA AAATA
14509092 AAA
1 AAA
14509095 GGGGGTGGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
5 31 0.79
6 4 0.10
7 4 0.10
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (5 bp):
AAATA
Found at i:14509063 original size:22 final size:23
Alignment explanation
Indices: 14509033--14509076 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
14509023 AAATCTAAGT
14509033 ATAAGAATAATAAATAAAATAAA
1 ATAAGAATAATAAATAAAATAAA
* *
14509056 ATAA-AATAATTAGTAAAATAA
1 ATAAGAATAATAAATAAAATAA
14509077 TAAATAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (23 bp):
ATAAGAATAATAAATAAAATAAA
Found at i:14509084 original size:12 final size:12
Alignment explanation
Indices: 14509033--14509084 Score: 63
Period size: 12 Copynumber: 4.4 Consensus size: 12
14509023 AAATCTAAGT
14509033 ATAAGAATAATAA
1 ATAA-AATAATAA
14509046 ATAAAAT-A-AA
1 ATAAAATAATAA
*
14509056 ATAAAATAATTA
1 ATAAAATAATAA
*
14509068 GTAAAATAATAA
1 ATAAAATAATAA
14509080 ATAAA
1 ATAAA
14509085 TAAAATAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
10 9 0.27
11 2 0.06
12 18 0.55
13 4 0.12
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (12 bp):
ATAAAATAATAA
Found at i:14509086 original size:8 final size:9
Alignment explanation
Indices: 14509041--14509093 Score: 56
Period size: 9 Copynumber: 5.7 Consensus size: 9
14509031 GTATAAGAAT
14509041 AATAAATAA
1 AATAAATAA
14509050 AATAAAATAA
1 AAT-AAATAA
14509060 AATAATTAGTAA
1 AATAA--A-TAA
14509072 AAT-AAT-A
1 AATAAATAA
14509079 AATAAATAA
1 AATAAATAA
14509088 AATAAA
1 AATAAA
14509094 AGGGGGTGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
7 4 0.11
8 4 0.11
9 13 0.34
10 9 0.24
11 2 0.05
12 6 0.16
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (9 bp):
AATAAATAA
Found at i:14511227 original size:21 final size:22
Alignment explanation
Indices: 14511193--14511233 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14511183 TCATGACCTT
* *
14511193 ATTATATAATGGTTTTATATTA
1 ATTATATAAAGGTTATATATTA
14511215 ATTA-ATAAAGGTTATATAT
1 ATTATATAAAGGTTATATAT
14511234 GTAAATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
ATTATATAAAGGTTATATATTA
Found at i:14512208 original size:45 final size:41
Alignment explanation
Indices: 14512158--14512280 Score: 113
Period size: 45 Copynumber: 2.9 Consensus size: 41
14512148 ATATGTGTTC
* **
14512158 TCGTGTAAGACCACGTCTGGGACATTGGCATCAATATATATGGT
1 TCGTGTAAGACCACATCTGGGACATTGGCATC-ATAT-T-TAAT
* * *
14512202 TACGTGTAAGACCATATTTGGGACATCGGCATCATATTTAAT
1 T-CGTGTAAGACCACATCTGGGACATTGGCATCATATTTAAT
* *
14512244 TCGTGTAAGACC-CTTTCTGGGACAGTGGCATCGATAT
1 TCGTGTAAGACCAC-ATCTGGGACATTGGCATC-ATAT
14512281 GAGATAGCAT
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
41 25 0.38
42 7 0.11
43 1 0.02
44 5 0.08
45 27 0.42
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGACCACATCTGGGACATTGGCATCATATTTAAT
Found at i:14512265 original size:41 final size:43
Alignment explanation
Indices: 14512158--14512280 Score: 112
Period size: 41 Copynumber: 2.8 Consensus size: 43
14512148 ATATGTGTTC
* **
14512158 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCAATATATATGGT
1 TCGTGTAAGACC-CTTTCTGGGACA-TGGCATCAATATATATAAT
*
14512202 TACGTGTAAGACCATATT-TGGGACATCGGCATC-ATAT-T-TAAT
1 T-CGTGTAAGACCCT-TTCTGGGACAT-GGCATCAATATATATAAT
*
14512244 TCGTGTAAGACCCTTTCTGGGACAGTGGCATCGATAT
1 TCGTGTAAGACCCTTTCTGGGACA-TGGCATCAATAT
14512281 GAGATAGCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
40 2 0.03
41 25 0.37
42 8 0.12
43 1 0.01
44 6 0.09
45 24 0.36
46 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCCTTTCTGGGACATGGCATCAATATATATAAT
Found at i:14516536 original size:19 final size:20
Alignment explanation
Indices: 14516508--14516546 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14516498 TATGAACAAT
14516508 CACATAATAATTT-ATCATA
1 CACATAATAATTTAATCATA
*
14516527 CACATCATAATTTAATCATA
1 CACATAATAATTTAATCATA
14516547 ATGTCCCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (20 bp):
CACATAATAATTTAATCATA
Found at i:14516645 original size:20 final size:20
Alignment explanation
Indices: 14516620--14516688 Score: 111
Period size: 20 Copynumber: 3.5 Consensus size: 20
14516610 GAAGTTCAGG
*
14516620 AAATTTTTTGTGAAATTTCA
1 AAATTTTTCGTGAAATTTCA
14516640 AAATTTTTCGTGAAATTTCA
1 AAATTTTTCGTGAAATTTCA
* *
14516660 AAACTTTTCATGAAATTTCA
1 AAATTTTTCGTGAAATTTCA
14516680 AAATTTTTC
1 AAATTTTTC
14516689 CTAAATACAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.46
Consensus pattern (20 bp):
AAATTTTTCGTGAAATTTCA
Found at i:14527123 original size:35 final size:35
Alignment explanation
Indices: 14527077--14527146 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
14527067 GAGTGTTAGA
*
14527077 TTAGTGGGGAAGTAGTTAGTTATGATTTGGATTGT
1 TTAGTGGGGAAGTAGTTAGTTATAATTTGGATTGT
14527112 TTAGTGGGGAAGTAGTTAGTTATAATTTGGATTGT
1 TTAGTGGGGAAGTAGTTAGTTATAATTTGGATTGT
14527147 ATTTTTATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (35 bp):
TTAGTGGGGAAGTAGTTAGTTATAATTTGGATTGT
Found at i:14528329 original size:24 final size:24
Alignment explanation
Indices: 14528274--14528330 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
14528264 AAACATATAC
*
14528274 ATTTTCATATACAGATTCAAACAT
1 ATTTTCATATACAAATTCAAACAT
* **
14528298 ATTCTCATATACAAATTCAAATGT
1 ATTTTCATATACAAATTCAAACAT
14528322 ATTTTCATA
1 ATTTTCATA
14528331 ATCAGATACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (24 bp):
ATTTTCATATACAAATTCAAACAT
Found at i:14528342 original size:24 final size:24
Alignment explanation
Indices: 14528315--14528367 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
14528305 TATACAAATT
* * *
14528315 CAAATGTATTTTCATAATCAGATA
1 CAAATGCATATTCAGAATCAGATA
* *
14528339 CAAATGCGTATTCAGATTCAGATA
1 CAAATGCATATTCAGAATCAGATA
14528363 CAAAT
1 CAAAT
14528368 ACAGACACAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (24 bp):
CAAATGCATATTCAGAATCAGATA
Found at i:14528621 original size:27 final size:27
Alignment explanation
Indices: 14528583--14528637 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
14528573 TACCAAGCTC
14528583 ATCCCGATGCACATGCACAAATAAACT
1 ATCCCGATGCACATGCACAAATAAACT
* *
14528610 ATCCCGATGCACATGCATAACTAAACT
1 ATCCCGATGCACATGCACAAATAAACT
14528637 A
1 A
14528638 ACACATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.40, C:0.29, G:0.11, T:0.20
Consensus pattern (27 bp):
ATCCCGATGCACATGCACAAATAAACT
Found at i:14547088 original size:37 final size:37
Alignment explanation
Indices: 14547024--14547180 Score: 199
Period size: 37 Copynumber: 4.0 Consensus size: 37
14547014 TACGTATGAT
*
14547024 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
14547060 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
14547097 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
14547140 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
14547180 C
1 C
14547181 GAAGCTATCA
Statistics
Matches: 107, Mismatches: 4, Indels: 19
0.82 0.03 0.15
Matches are distributed among these distances:
36 10 0.09
37 54 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:14547150 original size:46 final size:46
Alignment explanation
Indices: 14547097--14547461 Score: 424
Period size: 46 Copynumber: 7.5 Consensus size: 46
14547087 TAAGTGTAGC
* **
14547097 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
14547143 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
14547189 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
14547241 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
14547293 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * *
14547339 AACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
14547385 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
14547437 CACTTATCACTTTATCACTTTATCA
1 CACTTATCACTTTGTCACTTGATCA
14547462 CTTGATCAGA
Statistics
Matches: 287, Mismatches: 19, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
46 151 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.45
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:14547216 original size:52 final size:52
Alignment explanation
Indices: 14547140--14547471 Score: 427
Period size: 52 Copynumber: 6.6 Consensus size: 52
14547130 TAGCTAAAGC
* *
14547140 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14547193 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
14547245 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14547297 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14547343 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
14547389 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14547441 TATCACTTTATCACTTTATCACTTGATCAGA
1 TATCACTTT-TCAC-TTGTCACTTGATCAGA
14547472 AGTACTCAAA
Statistics
Matches: 250, Mismatches: 18, Indels: 21
0.87 0.06 0.07
Matches are distributed among these distances:
46 83 0.33
47 2 0.01
48 2 0.01
52 133 0.53
53 15 0.06
54 15 0.06
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Done.