Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 50 of 316
Found at i:14547453 original size:8 final size:8
Alignment explanation
Indices: 14547440--14547469 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
14547430 AAGCTACCAC
14547440 TTATCACT
1 TTATCACT
14547448 TTATCACT
1 TTATCACT
14547456 TTATCACT
1 TTATCACT
*
14547464 TGATCA
1 TTATCA
14547470 GAAGTACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.03, T:0.47
Consensus pattern (8 bp):
TTATCACT
Found at i:14547453 original size:98 final size:97
Alignment explanation
Indices: 14547097--14547461 Score: 479
Period size: 98 Copynumber: 3.7 Consensus size: 97
14547087 TAAGTGTAGC
* * * *
14547097 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
14547162 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
14547196 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
14547261 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
14547300 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
14547360 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
14547392 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
*
14547457 TATCA
65 GATCA
14547462 CTTGATCAGA
Statistics
Matches: 235, Mismatches: 18, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
92 39 0.17
94 1 0.00
96 1 0.00
98 145 0.62
99 7 0.03
100 2 0.01
101 1 0.00
104 39 0.17
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:14550651 original size:49 final size:49
Alignment explanation
Indices: 14550596--14550741 Score: 229
Period size: 49 Copynumber: 3.0 Consensus size: 49
14550586 TTCGTTTTCT
* * *
14550596 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* * *
14550645 CGATGCCATAGCCCAGCTATGGTCTTACACGGAGTCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
14550694 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACA-AATCACAT
14550742 GTTCACATGT
Statistics
Matches: 87, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 81 0.93
50 6 0.07
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
Found at i:14552062 original size:37 final size:37
Alignment explanation
Indices: 14551998--14552154 Score: 199
Period size: 37 Copynumber: 4.0 Consensus size: 37
14551988 TACGTATGAT
*
14551998 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
14552034 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
14552071 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
14552114 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
14552154 C
1 C
14552155 GAAGCTATCA
Statistics
Matches: 107, Mismatches: 4, Indels: 19
0.82 0.03 0.15
Matches are distributed among these distances:
36 10 0.09
37 54 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:14552124 original size:46 final size:46
Alignment explanation
Indices: 14552071--14552435 Score: 424
Period size: 46 Copynumber: 7.5 Consensus size: 46
14552061 TAAGTGTAGC
* **
14552071 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
14552117 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
14552163 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
14552215 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
14552267 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * *
14552313 AACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
14552359 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
14552411 CACTTATCACTTTATCACTTTATCA
1 CACTTATCACTTTGTCACTTGATCA
14552436 CTTGATCAGA
Statistics
Matches: 287, Mismatches: 19, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
46 151 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.45
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:14552190 original size:52 final size:52
Alignment explanation
Indices: 14552114--14552445 Score: 427
Period size: 52 Copynumber: 6.6 Consensus size: 52
14552104 TAGCTAAAGC
* *
14552114 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14552167 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
14552219 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14552271 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14552317 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
14552363 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14552415 TATCACTTTATCACTTTATCACTTGATCAGA
1 TATCACTTT-TCAC-TTGTCACTTGATCAGA
14552446 AGTACTCAAA
Statistics
Matches: 250, Mismatches: 18, Indels: 21
0.87 0.06 0.07
Matches are distributed among these distances:
46 83 0.33
47 2 0.01
48 2 0.01
52 133 0.53
53 15 0.06
54 15 0.06
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:14552427 original size:8 final size:8
Alignment explanation
Indices: 14552414--14552443 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
14552404 AAGCTACCAC
14552414 TTATCACT
1 TTATCACT
14552422 TTATCACT
1 TTATCACT
14552430 TTATCACT
1 TTATCACT
*
14552438 TGATCA
1 TTATCA
14552444 GAAGTACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.03, T:0.47
Consensus pattern (8 bp):
TTATCACT
Found at i:14552427 original size:98 final size:97
Alignment explanation
Indices: 14552071--14552435 Score: 479
Period size: 98 Copynumber: 3.7 Consensus size: 97
14552061 TAAGTGTAGC
* * * *
14552071 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
14552136 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
14552170 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
14552235 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
14552274 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
14552334 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
14552366 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
*
14552431 TATCA
65 GATCA
14552436 CTTGATCAGA
Statistics
Matches: 235, Mismatches: 18, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
92 39 0.17
94 1 0.00
96 1 0.00
98 145 0.62
99 7 0.03
100 2 0.01
101 1 0.00
104 39 0.17
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:14559954 original size:21 final size:21
Alignment explanation
Indices: 14559929--14559976 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
14559919 GAAAAATAAC
14559929 AAAAAAATAGCAACAAAACAAT
1 AAAAAAA-AGCAACAAAACAAT
* *
14559951 AAAAAAAAGTAAGAAAACAAT
1 AAAAAAAAGCAACAAAACAAT
14559972 AAAAA
1 AAAAA
14559977 TATAAGTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.77, C:0.08, G:0.06, T:0.08
Consensus pattern (21 bp):
AAAAAAAAGCAACAAAACAAT
Found at i:14560773 original size:20 final size:20
Alignment explanation
Indices: 14560744--14560781 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14560734 GAACAAAATA
*
14560744 AATTACACAAAGTATTATCT
1 AATTACACAAACTATTATCT
*
14560764 AATTATACAAACTATTAT
1 AATTACACAAACTATTAT
14560782 AATCTTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (20 bp):
AATTACACAAACTATTATCT
Found at i:14565823 original size:11 final size:11
Alignment explanation
Indices: 14565807--14565844 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
14565797 GACAAGTCTT
*
14565807 TAAAATAAACA
1 TAAAATAAAAA
14565818 TAAAATAAAAA
1 TAAAATAAAAA
14565829 TAAAAATAAAAA
1 T-AAAATAAAAA
14565841 TAAA
1 TAAA
14565845 GCGAAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:14565840 original size:7 final size:6
Alignment explanation
Indices: 14565808--14565871 Score: 60
Period size: 6 Copynumber: 10.3 Consensus size: 6
14565798 ACAAGTCTTT
* *
14565808 AAAATA AACAT- AAAATA AAAATA AAAATA AAAATA AAGCGA-A AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AA--AATA AAAATA
14565856 AAAGATAA AAAATA AA
1 AAA-AT-A AAAATA AA
14565872 TGGACTCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
5 5 0.10
6 31 0.65
7 7 0.15
8 5 0.10
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:14573385 original size:15 final size:15
Alignment explanation
Indices: 14573365--14573399 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14573355 ACGAGGAGCA
14573365 AGATTCTAATTCACT
1 AGATTCTAATTCACT
*
14573380 AGATTCTGATTCACT
1 AGATTCTAATTCACT
*
14573395 TGATT
1 AGATT
14573400 TGTGGCAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (15 bp):
AGATTCTAATTCACT
Found at i:14577082 original size:26 final size:26
Alignment explanation
Indices: 14577046--14577097 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14577036 ACTCATCAAA
14577046 TTGGTGCCCAATAAAATCCCCTCTCT
1 TTGGTGCCCAATAAAATCCCCTCTCT
*
14577072 TTGGTGCCCAATAAAATCTCCTCTCT
1 TTGGTGCCCAATAAAATCCCCTCTCT
14577098 ATCTTACTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.33, G:0.12, T:0.33
Consensus pattern (26 bp):
TTGGTGCCCAATAAAATCCCCTCTCT
Found at i:14583204 original size:21 final size:21
Alignment explanation
Indices: 14583164--14583204 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14583154 CTTAAAAGTT
* *
14583164 AAATTACAAAGCAACCAAATC
1 AAATTACAAAGAAACAAAATC
*
14583185 AAATTACAAATAAACAAAAT
1 AAATTACAAAGAAACAAAAT
14583205 GATTCTGCTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.63, C:0.17, G:0.02, T:0.17
Consensus pattern (21 bp):
AAATTACAAAGAAACAAAATC
Found at i:14585368 original size:74 final size:73
Alignment explanation
Indices: 14585126--14585368 Score: 220
Period size: 74 Copynumber: 3.3 Consensus size: 73
14585116 TTTTAAGTTC
* * * * * ** * *
14585126 CACAAATTTGCCCTCACTTAATTAATAAAGCCAAGTCCCTCAGGGGATGCAATC-AAGTCAACAA
1 CACAAACTTGCTCTCACTTAATTAGTAAAGCCAAATCCCTTAAAGGATGCAATCAAATTAAACAA
14585190 TTTGATTT
66 TTTGATTT
** * * * * *
14585198 CAGCTGACTTGCTCTCA-TTCAATTGGTAAAGCCAAATCTCTTAAAAGATGCAATCAAGTCAAAC
1 CA-CAAACTTGCTCTCACTT-AATTAGTAAAGCCAAATCCCTTAAAGGATGCAATCAAATTAAAC
*
14585262 ATTTTGATTTT
64 AATTTGA-TTT
* * * * * * *
14585273 CACATAGTTTCTCCCATTTAATTAGTAAAGCCAAATCCCTTAAAGGATGTAATCAAATTAAACAC
1 CACAAACTTGCTCTCACTTAATTAGTAAAGCCAAATCCCTTAAAGGATGCAATCAAATTAAACAA
14585338 TTTGACTTT
66 TTTGA-TTT
14585347 CACAAACTTGCTCTCACTTAAT
1 CACAAACTTGCTCTCACTTAAT
14585369 CGATAGAGCT
Statistics
Matches: 131, Mismatches: 35, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
72 4 0.03
73 37 0.28
74 83 0.63
75 7 0.05
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.32
Consensus pattern (73 bp):
CACAAACTTGCTCTCACTTAATTAGTAAAGCCAAATCCCTTAAAGGATGCAATCAAATTAAACAA
TTTGATTT
Found at i:14591059 original size:18 final size:18
Alignment explanation
Indices: 14591026--14591099 Score: 57
Period size: 18 Copynumber: 4.2 Consensus size: 18
14591016 AATAATTTTT
*
14591026 AAAATTAAAAATATTTATA
1 AAAATTTAAAA-ATTTATA
*
14591045 AAAATTTCAAAATTTAT-
1 AAAATTTAAAAATTTATA
*
14591062 ---ATTTAAAAAATTATA
1 AAAATTTAAAAATTTATA
* *
14591077 AAAATTTTAAAATATATA
1 AAAATTTAAAAATTTATA
14591095 CAAAA
1 -AAAA
14591100 AAGTTAAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
14 12 0.28
18 18 0.42
19 13 0.30
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATTTAAAAATTTATA
Found at i:14591065 original size:24 final size:24
Alignment explanation
Indices: 14591036--14591083 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14591026 AAAATTAAAA
* *
14591036 ATATTTATAAAAA-TTTCAAAATTT
1 ATATTTA-AAAAATTATAAAAATTT
14591060 ATATTTAAAAAATTATAAAAATTT
1 ATATTTAAAAAATTATAAAAATTT
14591084 TAAAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
ATATTTAAAAAATTATAAAAATTT
Found at i:14591081 original size:32 final size:34
Alignment explanation
Indices: 14591030--14591094 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
14591020 ATTTTTAAAA
*
14591030 TTAAAAATATTTATAAAAATTTCAAAATTTATAT
1 TTAAAAATATTTATAAAAATTTCAAAATATATAT
*
14591064 TTAAAAA-A-TTATAAAAATTTTAAAATATATA
1 TTAAAAATATTTATAAAAATTTCAAAATATATA
14591095 CAAAAAAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 21 0.72
33 1 0.03
34 7 0.24
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (34 bp):
TTAAAAATATTTATAAAAATTTCAAAATATATAT
Found at i:14591127 original size:28 final size:30
Alignment explanation
Indices: 14591041--14591127 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 30
14591031 TAAAAATATT
* * *
14591041 TATAAAAATTTCAAAATTTATATTTAAAAAAT
1 TATAAAAATTTTAAAATTT-T-TCTAAAAAAG
* *
14591073 TATAAAAATTTTAAAATATATAC-AAAAAAG
1 TATAAAAATTTTAAAAT-TTTTCTAAAAAAG
14591103 T-T-AAAATTTTAAAATTTTTCTAAAA
1 TATAAAAATTTTAAAATTTTTCTAAAA
14591128 TAATAATTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
27 3 0.07
28 17 0.37
29 1 0.02
30 7 0.15
32 17 0.37
33 1 0.02
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.39
Consensus pattern (30 bp):
TATAAAAATTTTAAAATTTTTCTAAAAAAG
Found at i:14594154 original size:12 final size:12
Alignment explanation
Indices: 14594137--14594164 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14594127 GTTGTTAATC
14594137 GTTTATTTGCTT
1 GTTTATTTGCTT
14594149 GTTTATTTGCTT
1 GTTTATTTGCTT
14594161 GTTT
1 GTTT
14594165 TGTTCTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.18, T:0.68
Consensus pattern (12 bp):
GTTTATTTGCTT
Found at i:14596836 original size:21 final size:20
Alignment explanation
Indices: 14596811--14596854 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
14596801 AAGGTCTTTG
14596811 TATATATTATCTACATTTTTT
1 TATATATTAT-TACATTTTTT
* **
14596832 TATATTTTATTTTATTTTTT
1 TATATATTATTACATTTTTT
14596852 TAT
1 TAT
14596855 TTCATTTGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (20 bp):
TATATATTATTACATTTTTT
Found at i:14597469 original size:126 final size:124
Alignment explanation
Indices: 14597302--14597727 Score: 424
Period size: 127 Copynumber: 3.4 Consensus size: 124
14597292 AACATAAGGA
* * * * * *
14597302 AATATTTCGTGTTTGGGAGTTCTAGG-GGTCCTGCCCGATCGTGCTGGGTTTCGATTTTTCGTTC
1 AATATTTCGTGTTTGGAAGTT-TGGGAGGTCGTGCCCAATCGTGCTGGGCTTC-ATTTTTCATTC
* * * * *
14597366 AATTAAAATACAAAATATCCTTTGGAAATTTTGTCCATGTTTTTTTTAAATTAAAACGAGGC
64 AACTAAAATACAGAATATCCTTTTGAAATTTTATCCATG-TTTTCTTAAATTAAAACGAGGC
* * * *
14597428 AATACTTCGTGTTTGAAAGTTTGGGAGGTCGTGCCCAATCGTGTTGGGCTTCAATTTTCTATTCA
1 AATATTTCGTGTTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCATTTTTC-ATTCA
** * ** * *
14597493 ACTAAAATATGGAATATCCTTTTTTGAAATTTCATCCACATGTTCTTAAAATAAAACGAGGC
65 ACTAAAATACAGAATATCC--TTTTGAAATTTTATCCATGTTTTCTTAAATTAAAACGAGGC
* * * *
14597555 AATATTTCATGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCATTCG
1 AATATTTCGTGTTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTC-ATTTTTCATTCA
* * * *
14597620 ACTAAAATACAGAATATCCTTTTGAAATTTTATACGTGTTTTCTCAAATTAAAATGAGGC
65 ACTAAAATACAGAATATCCTTTTGAAATTTTATCCATGTTTTCTTAAATTAAAACGAGGC
* * * * ** **
14597680 AATGTTTCAG-ATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTGGG
1 AATATTTC-GTGTTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGG
14597728 TTTTGATTTA
Statistics
Matches: 245, Mismatches: 49, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
125 80 0.33
126 59 0.24
127 87 0.36
128 19 0.08
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (124 bp):
AATATTTCGTGTTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGCTTCATTTTTCATTCAA
CTAAAATACAGAATATCCTTTTGAAATTTTATCCATGTTTTCTTAAATTAAAACGAGGC
Found at i:14608719 original size:64 final size:64
Alignment explanation
Indices: 14608642--14608768 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
14608632 CATTCATAAT
* * *
14608642 ACATCTAGTTAGGAGCACTT-GATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCATC
1 ACATCTAGCTAGGAACACTTGGATT-ATTTCGATCATAGCATCCTAATTATTTGACATAAGCATC
* *
14608706 ACATCTAGCTAGGAACACTTGGATTATTTCGATCATAGCATCCTAGTTATTTGGCATAAGCAT
1 ACATCTAGCTAGGAACACTTGGATTATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
14608769 AGATACATGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 53 0.93
65 4 0.07
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (64 bp):
ACATCTAGCTAGGAACACTTGGATTATTTCGATCATAGCATCCTAATTATTTGACATAAGCATC
Found at i:14608918 original size:45 final size:45
Alignment explanation
Indices: 14608838--14609957 Score: 458
Period size: 45 Copynumber: 25.2 Consensus size: 45
14608828 AAGGCAGATA
* * * ** *
14608838 TTATTTCCTTGAAGTTGCAGCGGAATAGA-TCGAAGATTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAAATTACAAGTC
*
14608883 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTA-CAAGTC
* * * * * *
14608928 TTATCTTCTTAAAGTTTCAG-GAAGCAGACTGAAAGTTAC-AGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAAG-TC
* * * * * * *
14608972 TTATCTCCATGTA-TCGACTA-TGGAACAGA-TCAGAAATGACGAGTC
1 TTATCTCCCTGAAGTTG-C-AGTGGAGCAGACTGA-AAATTACAAGTC
* * * * *
14609017 TTATCTCCATGTA-TCGGCTA-TAGAGCAGA-T----TTTAGCAAGTC
1 TTATCTCCCTGAAGT-TGC-AGTGGAGCAGACTGAAAATTA-CAAGTC
* * * *
14609058 TTATCTTCCTGAAGTTGCAG-GAAGCAAACTAAAAATTAC-AGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAAG-TC
** * * * *
14609102 TTATCTCTATGTA-TCGGCTA-TGGAGTAGA-TCGAAAATGACAAGTC
1 TTATCTCCCTGAAGT-TGC-AGTGGAGCAGACT-GAAAATTACAAGTC
* *
14609147 TTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGA-TAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTA-CAAGTC
* *
14609192 TTATCTTCCTGAAGTTGTA--GGAGGCAGACTGAAAATTTAC-AGATC
1 TTATCTCCCTGAAGTTGCAGTGGA-GCAGACTGAAAA-TTACAAG-TC
*
14609237 TTATCTCCAT-ATA-TCTGCTA-TGGAGCAGA-TCGAAAATGT-CAAGTC
1 TTATCTCCCTGA-AGT-TGC-AGTGGAGCAGACT-GAAAAT-TACAAGTC
14609282 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA-TAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTA-CAAGTC
* *
14609327 TTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAATTAC-AGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAAG-TC
** * * ** *
14609371 TTATCTCTATGTA-TCGGCTA-TGGAGCAGA-TCGAAAATGGCGAGTC
1 TTATCTCCCTGAAGT-TGC-AGTGGAGCAGACT-GAAAATTACAAGTC
* * *
14609416 TTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAATTTA-TAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA-TTACAAG-TC
* * * *
14609461 TTATCTCCATGTA-TCGACTA-TGGAGCAGA-TCG-AAATGACAAGTC
1 TTATCTCCCTGAAGTTG-C-AGTGGAGCAGACT-GAAAATTACAAGTC
*
14609505 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTA-CAAGTC
* * *
14609550 TTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAATTA-TAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAAG-TC
* * * * * ** *
14609594 TTATCTCCATGTA-TCGGCTA-TGGAGTAGA-TAAAAAATGGCGAGTC
1 TTATCTCCCTGAAGT-TGC-AGTGGAGCAGACT-GAAAATTACAAGTC
* * * * *** *** * *
14609639 CTATCTCCATGTA-TCGACTA-TGGAGCAGA-TTTCAGCCACCAGCC
1 TTATCTCCCTGAAGTTG-C-AGTGGAGCAGACTGAAAATTACAAGTC
14609683 TTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAAGA-TACTAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAA-ATTAC-AAGTC
* * * * * *
14609728 TTGTCTCTCTGAAGTTGTAGTAGAGCAAACT-AAAGA-TAGTAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAA-ATTA-CAAGTC
* *
14609773 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCAGGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTA-CAAGTC
* *
14609818 TTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAATTAC-AGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAAG-TC
* ** * * *
14609862 TTATCTCCAT-ATA-TCAACTA-TGGAGCAGATCT--TAGTTACTAGTC
1 TTATCTCCCTGA-AGT-TGC-AGTGGAGCAGA-CTGAAAATTACAAGTC
* * *
14609906 TTATCTTCCTGAAGTTGCAG-GAAGTAGACTGAAAATTAC-AGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAAG-TC
14609950 TTATCTCC
1 TTATCTCC
14609958 ATGTATCGGC
Statistics
Matches: 817, Mismatches: 162, Indels: 193
0.70 0.14 0.16
Matches are distributed among these distances:
40 8 0.01
41 18 0.02
42 3 0.00
43 30 0.04
44 249 0.30
45 461 0.56
46 45 0.06
47 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAAGTC
Found at i:14609466 original size:134 final size:134
Alignment explanation
Indices: 14608864--14609451 Score: 796
Period size: 134 Copynumber: 4.4 Consensus size: 134
14608854 GCAGCGGAAT
* * *
14608864 AGATCGAAGATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCT
1 AGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCT
* * * * *
14608929 TATCTTCTTAAAGTTTCAGGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGACTATG
66 TATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATG
*
14608994 GAAC
131 GAGC
* * * * * **
14608998 AGATC-AGAAATGACGAGTCTTATCTCCATGTA-TCGGCTA-TAGAGCAGA-T---TTTAGCAAG
1 AGATCGA-AAATGACAAGTCTTATCTCCCTGAAGT-TGC-AGTGGAGCAGACTGAAAATAGCAAG
* * *
14609056 TCTTATCTTCCTGAAGTTGCAGGAAGCAAACTAAAAATTACAGATCTTATCTCTATGTATCGGCT
63 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCT
*
14609121 ATGGAGT
128 ATGGAGC
* *
14609128 AGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAAGTCT
1 AGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCT
* * * *
14609193 TATCTTCCTGAAGTTGTAGGAGGCAGACTGAAAATTTACAGATCTTATCTCCATATATCTGCTAT
66 TATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATCGGCTAT
14609258 GGAGC
130 GGAGC
*
14609263 AGATCGAAAATGTCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCT
1 AGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCT
*
14609328 TATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCTATGTATCGGCTATG
66 TATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATG
14609393 GAGC
131 GAGC
* * * *
14609397 AGATCGAAAATGGCGAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAAT
1 AGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAAT
14609452 TTATAGATCT
Statistics
Matches: 396, Mismatches: 47, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
129 1 0.00
130 105 0.27
131 3 0.01
133 18 0.05
134 143 0.36
135 126 0.32
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (134 bp):
AGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCT
TATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATG
GAGC
Found at i:14609507 original size:134 final size:134
Alignment explanation
Indices: 14608877--14609853 Score: 672
Period size: 134 Copynumber: 7.3 Consensus size: 134
14608867 TCGAAGATTA
* * * *
14608877 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTATCTTCTTAAAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAG
** * * * *
14608942 TTTC-AGGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGACTATGGAACAGATC-AG
66 TCGCTAGG-AGCAGACTGAAAATGACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGA-
*
14609005 AAATGA
129 AAATGG
* * * * **
14609011 CGAGTCTTATCTCCATGTA-TCGGCTA-T-AGAGCAGA-T---TTTAGCAAGTCTTATCTTCCTG
1 CAAGTCTTATCTCCCTGAAGT-TGC-AGTGA-AGCAGACTGAAAATAGCAAGTCTTATCTTCCTG
* * * * * *
14609069 AAGTTGC-AGGAAGCAAACTAAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGTAGATC
63 AAGTCGCTAGG-AGCAGACTGAAAATGACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATC
*
14609133 GAAAATGA
127 GAAAATGG
* * *
14609141 CAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAAGTCTTATCTTCCTGAAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAG
* * * *
14609206 TTG-TAGGAGGCAGACTGAAAATTTACAGATCTTATCTCCATATATCTGCTATGGAGCAGATCGA
66 TCGCTAGGA-GCAGACTGAAAA-TGACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGA
*
14609270 AAATGT
129 AAATGG
*
14609276 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAG
* * *
14609341 TTGC-AGGAAGCAGACTGAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGCAGATCGAA
66 TCGCTAGG-AGCAGACTGAAAATGACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAA
14609405 AATGG
130 AATGG
* * **
14609410 CGAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAAT-TTATAGATCTTATC-TCCATG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAAATAGCA-AG-TCTTATCTTCC-TG
* * * *
14609472 TA-TCGACTATGGAGCAGA-TCG-AAATGACA-AGTCTTATCTCCCTGAAGT-TGC-AGTGGAGC
63 AAGTCG-CTA-GGAGCAGACT-GAAAATGACAGA-TCTTATCTCCATGTA-TCGGCTA-TGGAGC
* *
14609531 AGA-CTGAAGATAG
122 AGATC-GAAAATGG
* *
14609544 CAAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAATTA--TAGATCTTATC-TCCATG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAAA-TAGCAAG-TCTTATCTTCC-TG
* * * * * *
14609605 TA-TCGGCTATGGAGTAGA-TAAAAAATGGC-GAGTCCTATCTCCATGTATCGACTATGGAGCAG
63 AAGTC-GCTA-GGAGCAGACT-GAAAATGACAGA-TCTTATCTCCATGTATCGGCTATGGAGCAG
*** *
14609667 AT--TTCA-GC
124 ATCGAAAATGG
* * *
14609675 CACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAAGATA-CTAAGTCTTGTC-TCTC
1 CA--AGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAA-ATAGC-AAGTCTTATCTTC-C
* * * * *
14609737 TGAAGTTG-TAGTAGAGCAAACT-AAAGATAGTA-AG-TCTTATCTCCCTGAAGT-TGC-AGTGG
61 TGAAGTCGCTAG--GAGCAGACTGAAA-AT-G-ACAGATCTTATCTCCATGTA-TCGGCTA-TGG
* *
14609796 AGCAGA-CTGAAGATAG
119 AGCAGATC-GAAAATGG
* *
14609812 CAGGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAAT
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAAAT
14609854 TACAGATCTT
Statistics
Matches: 694, Mismatches: 92, Indels: 114
0.77 0.10 0.13
Matches are distributed among these distances:
129 1 0.00
130 104 0.15
131 5 0.01
132 3 0.00
133 94 0.14
134 313 0.45
135 167 0.24
136 5 0.01
137 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (134 bp):
CAAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAAATAGCAAGTCTTATCTTCCTGAAG
TCGCTAGGAGCAGACTGAAAATGACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAA
ATGG
Found at i:14609555 original size:89 final size:88
Alignment explanation
Indices: 14608864--14609823 Score: 430
Period size: 89 Copynumber: 10.8 Consensus size: 88
14608854 GCAGCGGAAT
* *
14608864 AGATCGAAGATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCT
1 AGATCGAA-ATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCT
* ** *
14608929 TATCTTC-T-TAAAG-TTTCAGGAAGC
65 TATCTCCATGTATCGCTAT--GG-AGC
* * * * * *
14608953 AGA-CTGAAAGTTAC-AGATCTTATCTCCATGTA-TCGACTA-TGGAACAGA-TCAGAAAT-GAC
1 AGATC-GAAA-TGACAAG-TCTTATCTCCCTGAAGTTG-C-AGTGGAGCAGACTGA-AAATAG-C
* *
14609012 GAGTCTTATCTCCATGTATCGGCTATAGAGC
59 AAGTCTTATCTCCATGTATC-GCTATGGAGC
*** * * * *
14609043 AGAT-TTTA-G-CAAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAAACTAAAAATTA-C-AGATC
1 AGATCGAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA-TAGCAAG-TC
* *
14609102 TTATCTCTATGTATCGGCTATGGAGT
64 TTATCTCCATGTATC-GCTATGGAGC
* *
14609128 AGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAAGTCT
1 AGATCG-AAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCT
* *
14609193 TATCTTCC-TGAAGTTG-TA-GGAGGC
65 TATC-TCCATGTA-TCGCTATGGA-GC
* *
14609217 AGA-CTGAAAATTTAC-AGATCTTATCTCCAT-ATA-TCTGCTA-TGGAGCAGA-TCGAAAAT-G
1 AGATC-G-AAA-TGACAAG-TCTTATCTCCCTGA-AGT-TGC-AGTGGAGCAGACT-GAAAATAG
* * *
14609275 TCAAGTCTTATCTCCCTGAAGTTGC-AGTGGAGC
58 -CAAGTCTTATCTCCATGTA-TCGCTA-TGGAGC
* *
14609308 AGA-CTGAAAAT-AGCAAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAATTA-C-AG
1 AGATC-G-AAATGA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA-TAGCAAG
*
14609368 ATCTTATCTCTATGTATCGGCTATGGAGC
62 -TCTTATCTCCATGTATC-GCTATGGAGC
* * * * **
14609397 AGATCGAAAATGGCGAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAAT-TTATAGAT
1 AGATCG-AAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCA-AG-T
14609460 CTTATCTCCATGTATCGACTATGGAGC
63 CTTATCTCCATGTATCG-CTATGGAGC
*
14609487 AGATCGAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTT
1 AGATCGAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCTT
* *
14609552 ATCTTCC-TGAAGTTGC-A-GGAAGC
66 ATC-TCCATGTA-TCGCTATGG-AGC
* * * * * * * * *
14609575 AGA-CTGAAAATTA-TAGATCTTATCTCCATGTA-TCGGCTA-TGGAGTAGA-TAAAAAATGGCG
1 AGATC-G-AAATGACAAG-TCTTATCTCCCTGAAGT-TGC-AGTGGAGCAGACT-GAAAATAGCA
*
14609635 AGTCCTATCTCCATGTATCGACTATGGAGC
60 AGTCTTATCTCCATGTATCG-CTATGGAGC
*** *** * *
14609665 AGATTTCAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAAGATA-CTAAGTC
1 AGATCGAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAA-ATAGC-AAGTC
* * * *
14609728 TTGTCTCTC-TGAAGTTG-TAGTAGAGC
64 TTATCTC-CATGTA-TCGCTA-TGGAGC
* * * * *
14609754 A-AACTAAA-GATAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGGT
1 AGATCGAAATG--A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGT
14609817 CTTATCT
63 CTTATCT
14609824 TCCTGAAGTT
Statistics
Matches: 676, Mismatches: 107, Indels: 175
0.71 0.11 0.18
Matches are distributed among these distances:
84 2 0.00
85 39 0.06
86 17 0.03
87 8 0.01
88 45 0.07
89 310 0.46
90 218 0.32
91 31 0.05
92 4 0.01
93 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (88 bp):
AGATCGAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAAGTCTT
ATCTCCATGTATCGCTATGGAGC
Found at i:14609587 original size:223 final size:224
Alignment explanation
Indices: 14609188--14609644 Score: 783
Period size: 223 Copynumber: 2.0 Consensus size: 224
14609178 GAAGATAGCA
* *
14609188 AGTCTTATCTTCCTGAAGTTGTAGGAGGCAGACTGAAAATTTACAGATCTTATCTCCATATATCT
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTTACAGATCTTATCTCCATATATCT
*
14609253 GCTATGGAGCAGATCGAAAATGTCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA
66 GCTATGGAGCAGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA
*
14609318 TAGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCTATGT
131 TAGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGT
**
14609383 ATCGGCTATGGAGCAGATCGAAAATGGCG
196 ATCGGCTATGGAGCAGATAAAAAATGGCG
* *
14609412 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTTATAGATCTTATCTCCATGTATC-
1 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTTACAGATCTTATCTCCATATATCT
*
14609476 GACTATGGAGCAGATCG-AAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
66 G-CTATGGAGCAGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAA
*
14609540 ATAGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTATAGATCTTATCTCCATG
130 ATAGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATG
*
14609605 TATCGGCTATGGAGTAGATAAAAAATGGCG
195 TATCGGCTATGGAGCAGATAAAAAATGGCG
*
14609635 AGTCCTATCT
1 AGTCTTATCT
14609645 CCATGTATCG
Statistics
Matches: 220, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
223 145 0.66
224 75 0.34
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (224 bp):
AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTTACAGATCTTATCTCCATATATCT
GCTATGGAGCAGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAA
TAGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGT
ATCGGCTATGGAGCAGATAAAAAATGGCG
Found at i:14609729 original size:223 final size:223
Alignment explanation
Indices: 14609188--14609823 Score: 677
Period size: 223 Copynumber: 2.8 Consensus size: 223
14609178 GAAGATAGCA
* * * * *** *
14609188 AGTCTTATCTTCCTGAAGTTGTAGGAGGCAGACTGAAAATTTACAGATCTTATCTCCAT-ATATC
1 AGTCCTATCTTCCTGAAGTCGCAGGAAGCAGACTGAAAAGCCACAGACCTTATCTCCATGA-ATC
*
14609252 TG-CTATGGAGCAGATCGAAAATGTCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA
65 -GACTATGGAGCAGATC-AAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA
* *
14609316 AATAGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCTAT
128 GATAGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCAT
**
14609381 GTATCGGCTATGGAGCAGATCGAAAATGGCG
193 GTATCGGCTATGGAGCAGATAAAAAATGGCG
* * *** * * *
14609412 AGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTTATAGATCTTATCTCCATGTATCG
1 AGTCCTATCTTCCTGAAGTCGCAGGAAGCAGACTGAAAAGCCACAGACCTTATCTCCATGAATCG
*
14609477 ACTATGGAGCAGATCGAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
66 ACTATGGAGCAGATCAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
*
14609542 AGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTATAGATCTTATCTCCATGTA
131 AGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTA
*
14609607 TCGGCTATGGAGTAGATAAAAAATGGCG
196 TCGGCTATGGAGCAGATAAAAAATGGCG
* *** *
14609635 AGTCCTATC-TCCATGTA-TCGACTATGG-AGCAGA-T-TTCAGCCACCAG-CCTTATCTCCCTG
1 AGTCCTATCTTCC-TGAAGTCG-C-A-GGAAGCAGACTGAAAAGCCA-CAGACCTTATCTCCATG
* * * * *
14609694 AAGTTG-C-AGTGGAGCAGA-CTAAAGAT-ACTAAGTCTTGTCTCTCTGAAGTTGTAGTAGAGCA
61 AA-TCGACTA-TGGAGCAGATC-AAA-ATGAC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * * * * * *
14609755 AACTAAAGATAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCAGGTCT
121 GACTGAAGATAGCAAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAATTA-CAGATCT
14609819 TATCT
184 TATCT
14609824 TCCTGAAGTT
Statistics
Matches: 359, Mismatches: 39, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
221 2 0.01
222 33 0.09
223 219 0.61
224 103 0.29
225 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (223 bp):
AGTCCTATCTTCCTGAAGTCGCAGGAAGCAGACTGAAAAGCCACAGACCTTATCTCCATGAATCG
ACTATGGAGCAGATCAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
AGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTA
TCGGCTATGGAGCAGATAAAAAATGGCG
Found at i:14609864 original size:44 final size:44
Alignment explanation
Indices: 14609771--14609955 Score: 152
Period size: 44 Copynumber: 4.2 Consensus size: 44
14609761 AGATAGTAAG
* * * *
14609771 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCAGG
1 TCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAAATTA-CAGA
14609816 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGA
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGA
** * *
14609860 TCTTATC-TCCAT-ATA-TCAACTATGG-AGCAGATCT--TAGTTACTAG-
1 TCTTATCTTCC-TGA-AGT-TGC-A-GGAAGCAGA-CTGAAAATTAC-AGA
*
14609904 TCTTATCTTCCTGAAGTTGCAGGAAGTAGACTGAAAATTACAGA
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGA
14609948 TCTTATCT
1 TCTTATCT
14609956 CCATGTATCG
Statistics
Matches: 112, Mismatches: 13, Indels: 31
0.72 0.08 0.20
Matches are distributed among these distances:
42 4 0.04
43 13 0.12
44 54 0.48
45 37 0.33
46 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (44 bp):
TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGA
Found at i:14609973 original size:88 final size:88
Alignment explanation
Indices: 14609815--14609980 Score: 278
Period size: 88 Copynumber: 1.9 Consensus size: 88
14609805 AAGATAGCAG
14609815 GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATATATCAAC
1 GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATATATCAAC
* *
14609880 TATGGAGCAGATCTTAGTTACTA
66 AATGGAACAGATCTTAGTTACTA
* * **
14609903 GTCTTATCTTCCTGAAGTTGCAGGAAGTAGACTGAAAATTACAGATCTTATCTCCATGTATCGGC
1 GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATATATCAAC
14609968 AATGGAACAGATC
66 AATGGAACAGATC
14609981 AGAAATGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 72 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (88 bp):
GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATATATCAAC
AATGGAACAGATCTTAGTTACTA
Found at i:14610931 original size:21 final size:21
Alignment explanation
Indices: 14610906--14610948 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
14610896 AAAACAATAG
*
14610906 AAAAATGAGT-TTTTCAAAAA
1 AAAAAAGAGTCTTTTCAAAAA
* *
14610926 AAAAAAGGGTCTTTTTAAAAA
1 AAAAAAGAGTCTTTTCAAAAA
14610947 AA
1 AA
14610949 TGGCAGAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.56, C:0.05, G:0.12, T:0.28
Consensus pattern (21 bp):
AAAAAAGAGTCTTTTCAAAAA
Found at i:14612522 original size:127 final size:124
Alignment explanation
Indices: 14612266--14612657 Score: 380
Period size: 127 Copynumber: 3.1 Consensus size: 124
14612256 TCGAGGGGTT
* * * * * * * *
14612266 GTGCCCGATCGTGCTGGGTTTCGATTTTTC-GTTCAGCTAAAATACAAAATATCCTTTGGAAATT
1 GTGCCCAATCGTGCTAGGCTTCAATTTTCCAGTTGA-CTAAAATACAGAATATCCTTTTGAAATT
** * * * ***
14612330 TTGTCCATGTTTTTTTAAAATTAAAACGAGGCAATACTTCGTGTTTGGAAGTTTGGGAGGCC
65 TCATACATG-TTTCTTAAAA-TAAAACGAGGCAATATTTCGTGTTTGGAAGTTTGGGAAATC
* *
14612392 GTGCCCAATCGTGCTAGGCTTCAATTTTCTA-TTCGACTAAAATA-TGAAATATCCTTTTTTGAA
1 GTGCCCAATCGTGCTAGGCTTCAATTTTCCAGTT-GACTAAAATACAG-AATATCC--TTTTGAA
14612455 ATTTCATCCACATG-TTCTTAAAATAAAACGAGGCAATATTTCGTGTTTGGAAGTTTGGGAAATC
62 ATTTCAT--ACATGTTTCTTAAAATAAAACGAGGCAATATTTCGTGTTTGGAAGTTTGGGAAATC
* *
14612519 GTGCCCAATTGTGCTGGGCTTCAATTTTCCAGTTGACTAAAATACAGAATATCCTTTTGAAATTT
1 GTGCCCAATCGTGCTAGGCTTCAATTTTCCAGTTGACTAAAATACAGAATATCCTTTTGAAATTT
* * * * * * * * * **
14612584 CATACGTGTTTTCTCAAATTAAAATGAGGCAATGTTTCGTATTTGAAAATTCGATAAATC
66 CATACATG-TTTCTTAAAATAAAACGAGGCAATATTTCGTGTTTGGAAGTTTGGGAAATC
14612644 GTGCCCAATC-TGCT
1 GTGCCCAATCGTGCT
14612658 GGGTTTCGAT
Statistics
Matches: 221, Mismatches: 34, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
123 4 0.02
124 4 0.02
125 63 0.29
126 41 0.19
127 83 0.38
128 22 0.10
130 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (124 bp):
GTGCCCAATCGTGCTAGGCTTCAATTTTCCAGTTGACTAAAATACAGAATATCCTTTTGAAATTT
CATACATGTTTCTTAAAATAAAACGAGGCAATATTTCGTGTTTGGAAGTTTGGGAAATC
Found at i:14615304 original size:20 final size:17
Alignment explanation
Indices: 14615261--14615295 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14615251 CAAAGTTATT
14615261 TAGAAACATGAAAGAAG
1 TAGAAACATGAAAGAAG
14615278 TAGAAACATGAAAGAAG
1 TAGAAACATGAAAGAAG
14615295 T
1 T
14615296 TGCAGAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.57, C:0.06, G:0.23, T:0.14
Consensus pattern (17 bp):
TAGAAACATGAAAGAAG
Found at i:14628592 original size:25 final size:26
Alignment explanation
Indices: 14628564--14628621 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
14628554 TTTATTTCAT
*
14628564 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
14628589 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
14628615 -AAATAAA
1 TAAATAAA
14628622 TATTAAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.29
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:14628606 original size:26 final size:24
Alignment explanation
Indices: 14628576--14628624 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
14628566 AATAAAAAAT
*
14628576 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAAT-AAATATA
14628602 TTTAAAAACATAAAAATAAATAT
1 TTTAAAAACATAAAAATAAATAT
14628625 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (24 bp):
TTTAAAAACATAAAAATAAATATA
Found at i:14628636 original size:22 final size:22
Alignment explanation
Indices: 14628595--14628653 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
14628585 ATAATAAATC
* *
14628595 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
14628615 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
14628637 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
14628654 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:14629059 original size:120 final size:121
Alignment explanation
Indices: 14628914--14629142 Score: 451
Period size: 120 Copynumber: 1.9 Consensus size: 121
14628904 TATTACTGAT
14628914 CATGATCAACTCTAGGCTATAACTCTAAATACATATTTTATTACTGATTTTAATTTTTTCTATTT
1 CATGATCAACTCTAGGCTATAACTCTAAATACATATTTTATTACTGATTTTAATTTTTTCTATTT
14628979 TTAATTTCATATCCAAAGAAAGGCTAATGATTAGATATATTGAAGACTTTCGAGCC
66 TTAATTTCATATCCAAAGAAAGGCTAATGATTAGATATATTGAAGACTTTCGAGCC
14629035 CATGATCAACTCTA-GCTATAACTCTAAATACATATTTTATTACTGATTTTAATTTTTTCTATTT
1 CATGATCAACTCTAGGCTATAACTCTAAATACATATTTTATTACTGATTTTAATTTTTTCTATTT
14629099 TTAATTTCATATCCAAAGAAAGGCTAATGATTAGATATATTGAA
66 TTAATTTCATATCCAAAGAAAGGCTAATGATTAGATATATTGAA
14629143 TCAATGGCAT
Statistics
Matches: 108, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
120 94 0.87
121 14 0.13
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (121 bp):
CATGATCAACTCTAGGCTATAACTCTAAATACATATTTTATTACTGATTTTAATTTTTTCTATTT
TTAATTTCATATCCAAAGAAAGGCTAATGATTAGATATATTGAAGACTTTCGAGCC
Found at i:14633895 original size:20 final size:20
Alignment explanation
Indices: 14633870--14633909 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14633860 TTCTTGTCTC
*
14633870 ACTTAACAGATATTATTTAT
1 ACTTAACAGAGATTATTTAT
* *
14633890 ACTTAATATAGATTATTTAT
1 ACTTAACAGAGATTATTTAT
14633910 TACGTGGGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.47
Consensus pattern (20 bp):
ACTTAACAGAGATTATTTAT
Found at i:14639878 original size:57 final size:57
Alignment explanation
Indices: 14639813--14639928 Score: 182
Period size: 57 Copynumber: 2.0 Consensus size: 57
14639803 ATAAATTTAA
**
14639813 TTCTCTAATATTTATAAATTCTA-CTAATTT-GATTTTAATTCTAAAAAATAAATAAAT
1 TTCTCTAATATTTATAAATTCTATC-AATTTAG-TCCTAATTCTAAAAAATAAATAAAT
14639870 TTCTCTAATATTTATAAATTCTATCAATTTAGTCCTAATTCTAAAAAATAAATAAAT
1 TTCTCTAATATTTATAAATTCTATCAATTTAGTCCTAATTCTAAAAAATAAATAAAT
14639927 TT
1 TT
14639929 AACCCTCAAC
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
57 53 0.96
58 2 0.04
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (57 bp):
TTCTCTAATATTTATAAATTCTATCAATTTAGTCCTAATTCTAAAAAATAAATAAAT
Found at i:14639928 original size:29 final size:28
Alignment explanation
Indices: 14639848--14639929 Score: 76
Period size: 29 Copynumber: 2.9 Consensus size: 28
14639838 AATTTGATTT
14639848 TAATTCTAAAAAATAAATAAATTT-CTC
1 TAATTCTAAAAAATAAATAAATTTACTC
* * * ** * *
14639875 TAATATTTATAAATTCTATCAATTTAGTCC
1 TAAT-TCTAAAAAATAAATAAATTTACT-C
14639905 TAATTCTAAAAAATAAATAAATTTA
1 TAATTCTAAAAAATAAATAAATTTA
14639930 ACCCTCAACG
Statistics
Matches: 39, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
27 4 0.10
28 14 0.36
29 16 0.41
30 5 0.13
ACGTcount: A:0.49, C:0.10, G:0.01, T:0.40
Consensus pattern (28 bp):
TAATTCTAAAAAATAAATAAATTTACTC
Found at i:14643728 original size:20 final size:19
Alignment explanation
Indices: 14643705--14643751 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
14643695 TATTTCTTAA
14643705 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATTC-ACC
* *
14643725 AATTCAAAACTCCATTCAGC
1 AATT-AAAACTCAATTCACC
14643745 AATTAAA
1 AATTAAA
14643752 CATGAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (19 bp):
AATTAAAACTCAATTCACC
Found at i:14645165 original size:26 final size:24
Alignment explanation
Indices: 14645107--14645165 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 24
14645097 AAATATTTTT
*
14645107 ATAATTTTGTATGTATTTTAATAAA
1 ATAACTTT-TATGTATTTTAATAAA
*
14645132 A-ATC-TTTATGTATTTTATCATAAA
1 ATAACTTTTATGTATTTTA--ATAAA
14645156 ATAACTTTTA
1 ATAACTTTTA
14645166 AATAAATTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
22 11 0.41
23 2 0.07
24 7 0.26
25 3 0.11
26 4 0.15
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (24 bp):
ATAACTTTTATGTATTTTAATAAA
Found at i:14656616 original size:5 final size:5
Alignment explanation
Indices: 14656606--14656648 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
14656596 AATGAGATAG
14656606 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
14656649 AATTAAATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:14656817 original size:20 final size:21
Alignment explanation
Indices: 14656781--14656825 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
14656771 AGCTTAAATT
* *
14656781 AAAT-GAATCAAAGTTGTTAC
1 AAATGGAATCAAAATTGTTAA
14656801 AAATGGAAT-AAAATTGTTAA
1 AAATGGAATCAAAATTGTTAA
14656821 AAATG
1 AAATG
14656826 TCAATGTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.29
Consensus pattern (21 bp):
AAATGGAATCAAAATTGTTAA
Found at i:14662912 original size:21 final size:21
Alignment explanation
Indices: 14662888--14662930 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14662878 AAAATGATCA
14662888 TCTAACTATTTAATTTTATCT
1 TCTAACTATTTAATTTTATCT
14662909 TCTAACTATTTAATTTTATCT
1 TCTAACTATTTAATTTTATCT
14662930 T
1 T
14662931 TTTTGTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.58
Consensus pattern (21 bp):
TCTAACTATTTAATTTTATCT
Found at i:14663845 original size:27 final size:28
Alignment explanation
Indices: 14663785--14663856 Score: 112
Period size: 26 Copynumber: 2.6 Consensus size: 28
14663775 ATAAAAAATA
14663785 AAAAAAATATTTTTTTATGAAATTTTAT
1 AAAAAAATATTTTTTTATGAAATTTTAT
14663813 -AAAAAATA-TTTTTTATGAAATTTTAT
1 AAAAAAATATTTTTTTATGAAATTTTAT
14663839 AAAAAAATAATTTCTTTT
1 AAAAAAAT-ATTT-TTTT
14663857 TTTTATAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
26 18 0.45
27 15 0.38
28 1 0.03
29 2 0.05
30 4 0.10
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (28 bp):
AAAAAAATATTTTTTTATGAAATTTTAT
Found at i:14663991 original size:40 final size:41
Alignment explanation
Indices: 14663945--14664032 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 41
14663935 TAAATTACTT
* * *
14663945 TTATAAAATTCTATG-ATTTTTAATTAATTTCTAATAATTA
1 TTATAAAATTCTAAGAAATTTTAATGAATTTCTAATAATTA
* * * *
14663985 TTAT-AAATTTTAAGAAATTTTAATGATTTTCTTATAATTT
1 TTATAAAATTCTAAGAAATTTTAATGAATTTCTAATAATTA
14664025 TTATAAAA
1 TTATAAAA
14664033 ATTTTATACT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
39 8 0.21
40 28 0.72
41 3 0.08
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.52
Consensus pattern (41 bp):
TTATAAAATTCTAAGAAATTTTAATGAATTTCTAATAATTA
Found at i:14669641 original size:47 final size:47
Alignment explanation
Indices: 14669589--14669994 Score: 650
Period size: 47 Copynumber: 8.6 Consensus size: 47
14669579 GATAATTGTG
* * *
14669589 ATGTGAATGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14669636 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14669683 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14669732 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14669779 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14669826 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14669875 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
14669922 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14669969 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
14669995 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 243 0.72
49 93 0.28
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:14669696 original size:96 final size:96
Alignment explanation
Indices: 14669589--14669994 Score: 639
Period size: 96 Copynumber: 4.3 Consensus size: 96
14669579 GATAATTGTG
14669589 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
14669652 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14669683 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
14669748 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
14669779 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TAT
14669842 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
14669875 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
14669938 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
14669969 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
14669995 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 13, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
94 101 0.34
95 3 0.01
96 189 0.65
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:14669738 original size:143 final size:143
Alignment explanation
Indices: 14669589--14669994 Score: 708
Period size: 143 Copynumber: 2.9 Consensus size: 143
14669579 GATAATTGTG
* *
14669589 ATGTGAATGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
14669654 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
14669719 GCCGATGTGATGA
131 GCCGATGTGATGA
14669732 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
*
14669797 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
14669862 GCCGATGTGATGA
131 GCCGATGTGATGA
14669875 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
14669940 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
14669995 TCCCGAAGGG
Statistics
Matches: 252, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 10 0.04
142 1 0.00
143 241 0.96
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:14672316 original size:40 final size:40
Alignment explanation
Indices: 14672257--14672937 Score: 1085
Period size: 40 Copynumber: 17.1 Consensus size: 40
14672247 AGGTCTCGAC
14672257 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
14672296 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
14672336 GATGTACCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
14672376 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
14672416 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
14672456 GATGTACCCGGGCTAAGTCTCGAAGAGTATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
14672496 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
14672536 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
14672576 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
14672616 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
14672656 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
14672696 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
14672736 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTACT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
14672776 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
14672816 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
14672856 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * * *
14672896 GTTATATTCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
14672936 GA
1 GA
14672938 CGTGTATTCG
Statistics
Matches: 602, Mismatches: 39, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 4 0.01
40 598 0.99
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:14676422 original size:47 final size:47
Alignment explanation
Indices: 14676370--14676775 Score: 632
Period size: 47 Copynumber: 8.6 Consensus size: 47
14676360 GATAATTGTG
* *
14676370 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14676417 ATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
14676464 ATGTGAAAGTTTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14676511 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14676560 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14676607 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14676656 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
14676703 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14676750 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
14676776 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 24, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 240 0.73
49 91 0.27
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:14676525 original size:143 final size:143
Alignment explanation
Indices: 14676370--14676775 Score: 640
Period size: 143 Copynumber: 2.9 Consensus size: 143
14676360 GATAATTGTG
14676370 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
14676433 ATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCGAATG
14676498 GCCAATGTGATGA
131 GCCAATGTGATGA
14676511 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
14676576 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-T-TATATATGTGATAAGGCCGAA
*
14676641 TGGCCGATGTGATGA
129 TGGCCAATGTGATGA
*
14676656 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * * *
14676719 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAG
14676776 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
141 19 0.08
142 2 0.01
143 179 0.73
144 1 0.00
145 45 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:14676554 original size:96 final size:96
Alignment explanation
Indices: 14676370--14676775 Score: 649
Period size: 96 Copynumber: 4.3 Consensus size: 96
14676360 GATAATTGTG
* *
14676370 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
14676435 A--TGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
14676464 ATGTGAAAGTTTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
14676529 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14676560 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
14676625 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14676656 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
14676719 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14676750 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
14676776 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
94 116 0.40
96 176 0.60
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:14679283 original size:33 final size:33
Alignment explanation
Indices: 14679246--14679347 Score: 125
Period size: 33 Copynumber: 3.1 Consensus size: 33
14679236 TTTTATAATT
* * *
14679246 GTACACTCGAGGTGCACATTCCCTTTTCAAGTG
1 GTACACTCAAAGTGCACATACCCTTTTCAAGTG
* * * *
14679279 GTACACACAAAGTGTACATACCCTTTTCAATTT
1 GTACACTCAAAGTGCACATACCCTTTTCAAGTG
*
14679312 GTACACTCAAAGTGCACATAACCTTTTCAAG-G
1 GTACACTCAAAGTGCACATACCCTTTTCAAGTG
14679344 GTAC
1 GTAC
14679348 GCATATAGTG
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
32 4 0.07
33 53 0.93
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (33 bp):
GTACACTCAAAGTGCACATACCCTTTTCAAGTG
Found at i:14679388 original size:65 final size:66
Alignment explanation
Indices: 14679257--14679511 Score: 167
Period size: 65 Copynumber: 3.9 Consensus size: 66
14679247 TACACTCGAG
** * * *
14679257 GTGCACATTCCCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAATTTGTACACTCAA
1 GTGCACATAACCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAAGTGGTACACACAA
14679322 A
66 A
* * * * ** *
14679323 GTGCACATAACCTTTTCAAG-GGTACGCATATAGTGTACCTTTCCTTTTCAAGTGGTATACACAA
1 GTGCACATAACCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAAGTGGTACACACAA
14679387 A
66 A
** * ** * * * ** * * *
14679388 GTATACCTTTCCTTTTCATA-TGGTATACACAAAGTATACCTTTCATTTTCATA-TGTTATACAC
1 GTGCACATAACCTTTTCA-AGTGGTACACACAAAGTGTACATACCCTTTTCA-AGTGGTACACAC
14679451 AAA
64 AAA
** * ** * * *
14679454 GTATACCTTTCCTTTCCAAGT-GTACACACAAAGTGTACATAGCCTTTTCAAGTTGTAC
1 GTGCACATAACCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAAGTGGTAC
14679512 CATTTGGGTA
Statistics
Matches: 150, Mismatches: 34, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
64 1 0.01
65 75 0.50
66 73 0.49
67 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.35
Consensus pattern (66 bp):
GTGCACATAACCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAAGTGGTACACACAA
A
Found at i:14679400 original size:33 final size:33
Alignment explanation
Indices: 14679267--14679511 Score: 210
Period size: 33 Copynumber: 7.5 Consensus size: 33
14679257 GTGCACATTC
* **
14679267 CCTTTTCAAGTGGTACACACAAAGTGTACATAC
1 CCTTTTCAAGTGGTACACACAAAGTGTACCTTT
* * * * * **
14679300 CCTTTTCAATTTGTACACTCAAAGTGCACATAA
1 CCTTTTCAAGTGGTACACACAAAGTGTACCTTT
* * *
14679333 CCTTTTCAAG-GGTACGCATATAGTGTACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTGTACCTTT
* *
14679365 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTGTACCTTT
* *
14679398 CCTTTTCATA-TGGTATACACAAAGTATACCTTT
1 CCTTTTCA-AGTGGTACACACAAAGTGTACCTTT
* * * *
14679431 CATTTTCATA-TGTTATACACAAAGTATACCTTT
1 CCTTTTCA-AGTGGTACACACAAAGTGTACCTTT
* * **
14679464 CCTTTCCAAGT-GTACACACAAAGTGTACATAG
1 CCTTTTCAAGTGGTACACACAAAGTGTACCTTT
*
14679496 CCTTTTCAAGTTGTAC
1 CCTTTTCAAGTGGTAC
14679512 CATTTGGGTA
Statistics
Matches: 177, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
32 49 0.28
33 127 0.72
34 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.35
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTGTACCTTT
Found at i:14680236 original size:20 final size:22
Alignment explanation
Indices: 14680194--14680241 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
14680184 TGTAAAAATG
*
14680194 ATTTATCTATCAATAATCTTTC
1 ATTTATCTATCAATAAACTTTC
14680216 ATTT-TCTATCAA-AAACTTTC
1 ATTTATCTATCAATAAACTTTC
14680236 AATTTA
1 -ATTTA
14680242 CAGCATGTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.30
21 12 0.52
22 4 0.17
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTATCTATCAATAAACTTTC
Found at i:14682971 original size:46 final size:46
Alignment explanation
Indices: 14682953--14683109 Score: 149
Period size: 46 Copynumber: 3.3 Consensus size: 46
14682943 TGACAAGTGG
* * *
14682953 AAAGTGATAAGTAATAGCT-TCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
*
14682999 AAAGTGATAAGTGATAGCT-TCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
* * *
14683045 AAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
14683097 AAAGTGATAAGTG
1 AAAGTGATAAGTG
14683110 GCTACACTTA
Statistics
Matches: 101, Mismatches: 4, Indels: 12
0.86 0.03 0.10
Matches are distributed among these distances:
46 57 0.56
52 44 0.44
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
Found at i:14682972 original size:52 final size:51
Alignment explanation
Indices: 14682901--14683109 Score: 284
Period size: 52 Copynumber: 4.1 Consensus size: 51
14682891 ATCAAGTGAC
* **
14682901 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
* *
14682953 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
14682999 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
* *
14683050 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTG
1 -AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-AAGTG
14683103 ATAAGTG
1 A-AAGTG
14683110 GCTACACTTA
Statistics
Matches: 140, Mismatches: 9, Indels: 15
0.85 0.05 0.09
Matches are distributed among these distances:
46 44 0.31
52 86 0.61
53 10 0.07
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:14683007 original size:98 final size:98
Alignment explanation
Indices: 14682887--14683110 Score: 394
Period size: 98 Copynumber: 2.3 Consensus size: 98
14682877 TTTGAGTACT
*
14682887 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
14682952 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
14682985 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
14683050 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
14683083 TCTGATCAAGAGACAAAGTGATAAGTGG
1 TCTGATCAAGTGACAAAGTGATAAGTGG
14683111 CTACACTTAT
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 119 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:14683119 original size:37 final size:37
Alignment explanation
Indices: 14683072--14683218 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
14683062 TGATAGCTTC
* *
14683072 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
14683109 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
14683146 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
**
14683183 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
14683218 G
1 G
14683219 ATCATACGTA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
Found at i:14684552 original size:58 final size:58
Alignment explanation
Indices: 14684475--14684642 Score: 237
Period size: 58 Copynumber: 3.0 Consensus size: 58
14684465 CATGTGAACA
14684475 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
14684534 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
14684590 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
14684641 TG
1 TG
14684643 ATTACGTGTA
Statistics
Matches: 104, Mismatches: 3, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
49 38 0.37
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 51 0.49
59 5 0.05
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:14684584 original size:28 final size:28
Alignment explanation
Indices: 14684494--14684584 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
14684484 GTGATTCCGT
14684494 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
14684522 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
14684551 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
14684580 GTAAG
1 GTAAG
14684585 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:14684607 original size:49 final size:49
Alignment explanation
Indices: 14684535--14684677 Score: 232
Period size: 49 Copynumber: 2.9 Consensus size: 49
14684525 AGTGATATGT
* *
14684535 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
14684584 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
14684633 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
14684678 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 88 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:14692674 original size:50 final size:50
Alignment explanation
Indices: 14692550--14692749 Score: 208
Period size: 50 Copynumber: 4.0 Consensus size: 50
14692540 TATATGTAGC
* * * *
14692550 TAGGTCGCATGTGTAGTACTAATTGCAGGCTACTATGCGTACCCA-ATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGAT-AGT
* * * * * *
14692601 TCGATCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGT
* * * *
14692651 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGT
** *
14692701 T-GGTGGCATGTGTAGTACTAAGTGCAGGCTAC-ATGCGTACCAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGT
14692749 T
1 T
14692750 TGGCTACATA
Statistics
Matches: 125, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
48 13 0.10
49 28 0.22
50 49 0.39
51 35 0.28
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGT
Found at i:14695037 original size:80 final size:81
Alignment explanation
Indices: 14694829--14695088 Score: 307
Period size: 81 Copynumber: 3.2 Consensus size: 81
14694819 TTACACTATA
* * * * *
14694829 AGGGTATTTCAGTAATTTTATACAA-CAAGGGTATTTCGATAATTTTACAAA-TCGAGGGTATTT
1 AGGGTATTTCGGTAATTTTACA-AATCGAGGGTGTTTCGATAATTTTACAAACT-GAGGGTACTT
*
14694892 CGGTAATTTTAAAAATCG
64 CGGTAATTTTACAAATCG
* * * * *
14694910 AAGGTGTTTTGGTGATTTTACAAATCGAGGGTGTTTCCG-TAATTTTACAAACTGATGGTACTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTT-CGATAATTTTACAAACTGAGGGTACTTC
14694974 GGTAATTTTACAAATCG
65 GGTAATTTTACAAATCG
*
14694991 AGGGTA-TTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAACCG-GGAGTACTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAACTGAGG-GTACTTC
* *
14695054 GATAATTTTACAAATTG
65 GGTAATTTTACAAATCG
14695071 -GGGTTATTTCGGTAATTT
1 AGGG-TATTTCGGTAATTT
14695089 CTCTTTATTA
Statistics
Matches: 153, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
79 6 0.04
80 67 0.44
81 77 0.50
82 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAACTGAGGGTACTTCG
GTAATTTTACAAATCG
Found at i:14695039 original size:27 final size:27
Alignment explanation
Indices: 14694829--14695088 Score: 278
Period size: 27 Copynumber: 9.7 Consensus size: 27
14694819 TTACACTATA
* * *
14694829 AGGGTATTTCAGTAATTTTATACAA-CA
1 AGGGTATTTCGGTAATTTTACA-AATCG
*
14694856 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
14694883 AGGGTATTTCGGTAATTTTAAAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
14694910 AAGGTGTTTTGGTGATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
14694937 AGGGTGTTTCCGTAATTTTACAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
* *
14694964 ATGGTACTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
14694991 AGGGTA-TTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
14695017 AGGGTGTTTCGATAATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
14695044 -GGAGTACTTCGATAATTTTACAAATTG
1 AGG-GTATTTCGGTAATTTTACAAATCG
14695071 -GGGTTATTTCGGTAATTT
1 AGGG-TATTTCGGTAATTT
14695089 CTCTTTATTA
Statistics
Matches: 198, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
26 31 0.16
27 166 0.84
28 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:14695440 original size:28 final size:28
Alignment explanation
Indices: 14695404--14695467 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
14695394 TGGCCCGTTT
*
14695404 AGGCCCAATCTCATTCACATAGCCCATC
1 AGGCCCAATCACATTCACATAGCCCATC
* *
14695432 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATAGCCCATC
14695460 AGGCCCAA
1 AGGCCCAA
14695468 CTACTTCCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.30, C:0.38, G:0.14, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATAGCCCATC
Found at i:14702530 original size:103 final size:103
Alignment explanation
Indices: 14702351--14702558 Score: 371
Period size: 103 Copynumber: 2.0 Consensus size: 103
14702341 TCGAAAATAT
14702351 GAGTGGTAGTCGAGATGCTACGAGGGATTCTACAGTGAGGTCTGAGGCACGGGCGCCGGCCAGAG
1 GAGTGGTAGTCGAGATGCTACGAGGGATTCTACAGTGAGGTCTGAGGCACGGGCGCCGGCCAGAG
*
14702416 CTTTTTTCATTCATGCTTGCAAAGATGCGTTAGTGCCA
66 CTTTTTTCATTCAAGCTTGCAAAGATGCGTTAGTGCCA
* * *
14702454 GAGTGGTAGTCGAGATGCTACGAGGGATTCTACGGTGAGGTCTGAGGCATGGGCGCCGGCCAGGG
1 GAGTGGTAGTCGAGATGCTACGAGGGATTCTACAGTGAGGTCTGAGGCACGGGCGCCGGCCAGAG
*
14702519 CTTTTTTCATTCAAGCTTGCGAAGATGCGTTAGTGCCA
66 CTTTTTTCATTCAAGCTTGCAAAGATGCGTTAGTGCCA
14702557 GA
1 GA
14702559 TGTTATCACT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.21, C:0.20, G:0.35, T:0.25
Consensus pattern (103 bp):
GAGTGGTAGTCGAGATGCTACGAGGGATTCTACAGTGAGGTCTGAGGCACGGGCGCCGGCCAGAG
CTTTTTTCATTCAAGCTTGCAAAGATGCGTTAGTGCCA
Found at i:14705754 original size:21 final size:21
Alignment explanation
Indices: 14705730--14705770 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
14705720 ATTGAGAAGG
14705730 CTACTTGGGAACCCGAGGAGT
1 CTACTTGGGAACCCGAGGAGT
14705751 CTACTTGGGAACCCGAGGAG
1 CTACTTGGGAACCCGAGGAG
14705771 ACCATGAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.17
Consensus pattern (21 bp):
CTACTTGGGAACCCGAGGAGT
Found at i:14709357 original size:25 final size:24
Alignment explanation
Indices: 14709329--14709414 Score: 73
Period size: 25 Copynumber: 3.5 Consensus size: 24
14709319 CACACCACAG
14709329 CTCGTATGAGCTTCCCGTTATACAA
1 CTCGTATGAGCTTCCCGTT-TACAA
* * * *
14709354 CTCGCATGAACTTCCCGTTGTTTCAG
1 CTCGTATGAGCTTCCCG-T-TTACAA
* * **
14709380 CTCGGAAGAGCTTCTTGTTTACAA
1 CTCGTATGAGCTTCCCGTTTACAA
14709404 CTCGTATGAGC
1 CTCGTATGAGC
14709415 ATACATGAAT
Statistics
Matches: 46, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
24 13 0.28
25 16 0.35
26 16 0.35
27 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.33
Consensus pattern (24 bp):
CTCGTATGAGCTTCCCGTTTACAA
Found at i:14715744 original size:108 final size:109
Alignment explanation
Indices: 14715554--14715750 Score: 333
Period size: 108 Copynumber: 1.8 Consensus size: 109
14715544 CCAATTTAGT
**
14715554 TTATATCATGTATCTCCATTGTTATCAAATTTCGAAAATGGTTTGTTTATATAACTGGGTTTGTG
1 TTATATCATGTATCTCCATTGTTATCAAATTTCGAAAATGGTTTGCATATATAACTGGGTTTGTG
14715619 GTTTGACAAGCGTATACAAAATATTATGTAAGGCATATAAAGTA
66 GTTTGACAAGCGTATACAAAATATTATGTAAGGCATATAAAGTA
* *
14715663 TTATATTATGTATCTCCATTGTTATCAAATTTCG-AAATGGTTTGCATATATAATTGGGTTTGTG
1 TTATATCATGTATCTCCATTGTTATCAAATTTCGAAAATGGTTTGCATATATAACTGGGTTTGTG
* *
14715727 GTTTGATAAGCGTATACAAGATAT
66 GTTTGACAAGCGTATACAAAATAT
14715751 AAAGTATCTA
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 49 0.60
109 33 0.40
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (109 bp):
TTATATCATGTATCTCCATTGTTATCAAATTTCGAAAATGGTTTGCATATATAACTGGGTTTGTG
GTTTGACAAGCGTATACAAAATATTATGTAAGGCATATAAAGTA
Found at i:14721773 original size:20 final size:20
Alignment explanation
Indices: 14721726--14721773 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
14721716 AATCAGATAA
14721726 TAACTAACAACTAACTACTT
1 TAACTAACAACTAACTACTT
* **
14721746 T-GCTTAACAACTAACTTTTT
1 TAAC-TAACAACTAACTACTT
14721766 TAACTAAC
1 TAACTAAC
14721774 TGCAACAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
19 1 0.05
20 20 0.91
21 1 0.05
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (20 bp):
TAACTAACAACTAACTACTT
Found at i:14734756 original size:42 final size:43
Alignment explanation
Indices: 14734700--14734781 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
14734690 CCTAATTGGG
14734700 AAAATAGTTCTCTTA-TTCTAATAAACTACTAAAACATAAGGA
1 AAAATAGTTCTCTTATTTCTAATAAACTACTAAAACATAAGGA
*
14734742 AAAATAGTTCTCTTATTTCTAATAAACTACTAAAAGATAA
1 AAAATAGTTCTCTTATTTCTAATAAACTACTAAAACATAA
14734782 AATAAAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
42 15 0.39
43 23 0.61
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (43 bp):
AAAATAGTTCTCTTATTTCTAATAAACTACTAAAACATAAGGA
Found at i:14734853 original size:19 final size:19
Alignment explanation
Indices: 14734813--14734851 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
14734803 TGAATAAAAC
*
14734813 TTATCTACTTAAATAAGAT
1 TTATCTACCTAAATAAGAT
14734832 TTATCTACCTAAATAA-AT
1 TTATCTACCTAAATAAGAT
14734850 TT
1 TT
14734852 TAAATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.44
Consensus pattern (19 bp):
TTATCTACCTAAATAAGAT
Found at i:14741956 original size:24 final size:24
Alignment explanation
Indices: 14741928--14741980 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
14741918 TTAGTAAGTC
* *
14741928 AAATAAACTATGCTAATAAATATT
1 AAATAAACTATACTAATAAATACT
* *
14741952 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
14741976 AAATA
1 AAATA
14741981 TTCTAGAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.34
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:14746550 original size:51 final size:51
Alignment explanation
Indices: 14746482--14746585 Score: 122
Period size: 51 Copynumber: 2.0 Consensus size: 51
14746472 AATAACAAAT
** * *
14746482 TTAGCCCTCAACTTTTACATAT-TATATCAATTT-AGTCATAATTTTAAAAAA
1 TTAGCCCTCAAAATTTACAAATGT-TATCAATTTGA-TCATAATTCTAAAAAA
* *
14746533 TTAGCCCTCAAAATTTACAAATGTTCTCAATTTGATCCTAATTCTAAAAAA
1 TTAGCCCTCAAAATTTACAAATGTTATCAATTTGATCATAATTCTAAAAAA
14746584 TT
1 TT
14746586 TTAAATATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 43 0.96
52 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.39
Consensus pattern (51 bp):
TTAGCCCTCAAAATTTACAAATGTTATCAATTTGATCATAATTCTAAAAAA
Found at i:14746751 original size:20 final size:19
Alignment explanation
Indices: 14746713--14746752 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14746703 CCCGTCCCTT
*
14746713 TCCCTTTCCCCCACCACCA
1 TCCCTCTCCCCCACCACCA
*
14746732 TCCCTCTCCCTCCTCCACCA
1 TCCCTCTCCC-CCACCACCA
14746752 T
1 T
14746753 TGTCTCTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.12, C:0.62, G:0.00, T:0.25
Consensus pattern (19 bp):
TCCCTCTCCCCCACCACCA
Found at i:14746876 original size:12 final size:12
Alignment explanation
Indices: 14746852--14746884 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14746842 GGGGAATTTT
14746852 TTAATAT-AATA
1 TTAATATAAATA
14746863 TTAATATAAATA
1 TTAATATAAATA
*
14746875 TTAGTATAAA
1 TTAATATAAA
14746885 ATTTAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 7 0.35
12 13 0.65
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (12 bp):
TTAATATAAATA
Found at i:14750605 original size:33 final size:31
Alignment explanation
Indices: 14750535--14750605 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 31
14750525 TAACTTTACT
* * *
14750535 TCAACTAAAACCTAATTTGCATTATTTTTTT
1 TCAAATAAAACCTAATTTGCATTAATTTTTA
14750566 TCAAATAAAACCTAATTTGCATATCCAATTTTTA
1 TCAAATAAAACCTAATTTGCAT-T--AATTTTTA
14750600 T-AAATA
1 TCAAATA
14750606 TATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 21 0.62
32 1 0.03
33 5 0.15
34 7 0.21
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.42
Consensus pattern (31 bp):
TCAAATAAAACCTAATTTGCATTAATTTTTA
Found at i:14751788 original size:3 final size:3
Alignment explanation
Indices: 14751782--14751810 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
14751772 GTTGCTGCTA
14751782 GTG GTG GTG GTG GTG GTG GTG GTG G-G GTG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
14751811 TATGGGATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.00, C:0.00, G:0.69, T:0.31
Consensus pattern (3 bp):
GTG
Found at i:14756108 original size:26 final size:26
Alignment explanation
Indices: 14756072--14756121 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14756062 TTCCTAAAAA
*
14756072 GTATGCCCGTAGTGTGGCTTTTCTCT
1 GTATGCCCGTAGTGTAGCTTTTCTCT
14756098 GTATGCCCGTAGTGTAGCTTTTCT
1 GTATGCCCGTAGTGTAGCTTTTCT
14756122 GTTCTTAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.10, C:0.22, G:0.26, T:0.42
Consensus pattern (26 bp):
GTATGCCCGTAGTGTAGCTTTTCTCT
Found at i:14767262 original size:23 final size:23
Alignment explanation
Indices: 14767231--14767281 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
14767221 GTTGATTAAA
*
14767231 AATTGAAAATAAATAAAACCATT
1 AATTAAAAATAAATAAAACCATT
14767254 AATTAAAAATAAATAAAACCATT
1 AATTAAAAATAAATAAAACCATT
14767277 AATTA
1 AATTA
14767282 TTCTATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (23 bp):
AATTAAAAATAAATAAAACCATT
Found at i:14772370 original size:18 final size:17
Alignment explanation
Indices: 14772337--14772375 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
14772327 TTGTATAAAT
14772337 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
14772355 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
14772372 TGTG
1 TGTG
14772376 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:14772628 original size:23 final size:23
Alignment explanation
Indices: 14772601--14772698 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
14772591 AGTGTTATTG
14772601 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
14772624 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
14772647 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
14772669 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
14772692 ATCAGTG
1 ATCAGTG
14772699 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:14772667 original size:45 final size:45
Alignment explanation
Indices: 14772603--14772691 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
14772593 TGTTATTGAT
* *
14772603 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
14772648 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
14772692 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:14779741 original size:18 final size:17
Alignment explanation
Indices: 14779708--14779746 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
14779698 TTGTATAAAT
14779708 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
14779726 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
14779743 TGTG
1 TGTG
14779747 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:14779999 original size:23 final size:23
Alignment explanation
Indices: 14779972--14780068 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
14779962 AGTGTTATTG
14779972 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
14779995 TTCAGTGGT-GCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
14780017 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
14780039 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
14780062 ATCAGTG
1 ATCAGTG
14780069 TGGCACTTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
21 7 0.10
22 24 0.36
23 36 0.54
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:14780037 original size:44 final size:45
Alignment explanation
Indices: 14779974--14780061 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 45
14779964 TGTTATTGAT
* *
14779974 CAGTGGTAGCTTCGGCTACATTTCAGTGGT-GCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
14780018 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
14780062 ATCAGTGTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 29 0.71
45 12 0.29
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:14783489 original size:21 final size:21
Alignment explanation
Indices: 14783465--14783518 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
14783455 TTCGCTTCTC
14783465 CCACGCCCATGTGTTAGGGTA
1 CCACGCCCATGTGTTAGGGTA
*
14783486 CCACGCCTATGTGTTAGGGTA
1 CCACGCCCATGTGTTAGGGTA
*
14783507 CCACACCCATGT
1 CCACGCCCATGT
14783519 ATTGTTATCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.20, C:0.31, G:0.24, T:0.24
Consensus pattern (21 bp):
CCACGCCCATGTGTTAGGGTA
Found at i:14788737 original size:16 final size:16
Alignment explanation
Indices: 14788716--14788747 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14788706 TCAATAAAAA
14788716 TTTGGATATGAATAAT
1 TTTGGATATGAATAAT
*
14788732 TTTGGATATGATTAAT
1 TTTGGATATGAATAAT
14788748 AAATGACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (16 bp):
TTTGGATATGAATAAT
Found at i:14789594 original size:12 final size:12
Alignment explanation
Indices: 14789577--14789601 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14789567 ATATACAATT
14789577 TCGTTTCTTATA
1 TCGTTTCTTATA
14789589 TCGTTTCTTATA
1 TCGTTTCTTATA
14789601 T
1 T
14789602 GTGAAACTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.60
Consensus pattern (12 bp):
TCGTTTCTTATA
Found at i:14791299 original size:19 final size:20
Alignment explanation
Indices: 14791261--14791300 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14791251 GTTTCAAAAT
*
14791261 TTTTGAAAAGGTATTGATAC
1 TTTTGAAAAGGTACTGATAC
*
14791281 TTTTGATAA-GTACTGATAC
1 TTTTGAAAAGGTACTGATAC
14791300 T
1 T
14791301 ATTTCTAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (20 bp):
TTTTGAAAAGGTACTGATAC
Found at i:14795420 original size:21 final size:22
Alignment explanation
Indices: 14795378--14795421 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
14795368 ATCCAGAAAC
*
14795378 ATTTGTCAAATCAAAATGTCAT
1 ATTTGTCAAATCAAAATATCAT
14795400 ATTT-TCATAATC-AAATATCAT
1 ATTTGTCA-AATCAAAATATCAT
14795421 A
1 A
14795422 ACAGAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.39
Consensus pattern (22 bp):
ATTTGTCAAATCAAAATATCAT
Found at i:14797098 original size:10 final size:10
Alignment explanation
Indices: 14797083--14797139 Score: 62
Period size: 10 Copynumber: 5.3 Consensus size: 10
14797073 ATTGGCAATA
14797083 TGAATGATAT
1 TGAATGATAT
14797093 TGAATGATAT
1 TGAATGATAT
14797103 TGATCATGA-ATT
1 TGA--ATGATA-T
14797115 TGGAATAGATAT
1 T-GAAT-GATAT
14797127 TGAATGATAT
1 TGAATGATAT
14797137 TGA
1 TGA
14797140 TCACGAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
10 21 0.51
11 7 0.17
12 10 0.24
13 3 0.07
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.39
Consensus pattern (10 bp):
TGAATGATAT
Found at i:14797128 original size:34 final size:34
Alignment explanation
Indices: 14797084--14797165 Score: 130
Period size: 34 Copynumber: 2.4 Consensus size: 34
14797074 TTGGCAATAT
*
14797084 GAAT-GATATTGAATGATATTGATCATGAATTTG
1 GAATAGATATTGAATGATATTGATCACGAATTTG
14797117 GAATAGATATTGAATGATATTGATCACGAATTTG
1 GAATAGATATTGAATGATATTGATCACGAATTTG
* *
14797151 GAGTAGACATTGAAT
1 GAATAGATATTGAAT
14797166 TGAATTATTC
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 4 0.09
34 41 0.91
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (34 bp):
GAATAGATATTGAATGATATTGATCACGAATTTG
Found at i:14799982 original size:21 final size:21
Alignment explanation
Indices: 14799956--14800105 Score: 74
Period size: 21 Copynumber: 7.1 Consensus size: 21
14799946 CGAAAAGCTG
14799956 AACAAAAGCTCATAAGA-TCTA
1 AACAAAAGCTCATAAGAGT-TA
* * *
14799977 AACAAAAACTCTTAAGAGTTG
1 AACAAAAGCTCATAAGAGTTA
* * *
14799998 AACAAAAGCTCGTAAGAGCTG
1 AACAAAAGCTCATAAGAGTTA
** *
14800019 AACGGGAA-CTCATAAGAGCTA
1 AAC-AAAAGCTCATAAGAGTTA
* * *
14800040 AAGAGAAGCTCA-ATAGAGCTGA
1 AACAAAAGCTCATA-AGAG-TTA
* * *
14800062 ACCGAAA-CTCATATGAGTTA
1 AACAAAAGCTCATAAGAGTTA
* * *
14800082 AACAGAAGCTCATGAGAGCTA
1 AACAAAAGCTCATAAGAGTTA
14800103 AAC
1 AAC
14800106 GGAAAGTAAA
Statistics
Matches: 96, Mismatches: 26, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
20 10 0.10
21 78 0.81
22 8 0.08
ACGTcount: A:0.45, C:0.18, G:0.19, T:0.17
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGTTA
Found at i:14800029 original size:42 final size:42
Alignment explanation
Indices: 14799956--14800110 Score: 150
Period size: 42 Copynumber: 3.7 Consensus size: 42
14799946 CGAAAAGCTG
* ** * *
14799956 AACAAAAGCTCATAAGATCTAAACAAAAACTCTTAAGAGTTG
1 AACAAAAGCTCATAAGAGCTAAACGGAAACTCATAAGAGTTA
* * * *
14799998 AACAAAAGCTCGTAAGAGCTGAACGGGAACTCATAAGAGCTA
1 AACAAAAGCTCATAAGAGCTAAACGGAAACTCATAAGAGTTA
* * * * *
14800040 AAGAGAAGCTCA-ATAGAGCTGAACCGAAACTCATATGAGTTA
1 AACAAAAGCTCATA-AGAGCTAAACGGAAACTCATAAGAGTTA
* *
14800082 AACAGAAGCTCATGAGAGCTAAACGGAAA
1 AACAAAAGCTCATAAGAGCTAAACGGAAA
14800111 GTAAACATGA
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
41 1 0.01
42 90 0.99
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (42 bp):
AACAAAAGCTCATAAGAGCTAAACGGAAACTCATAAGAGTTA
Found at i:14800613 original size:17 final size:18
Alignment explanation
Indices: 14800563--14800621 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 18
14800553 TAATTTAGTC
14800563 ATTAACTAATTAATCTTATCAA
1 ATTAACTAATT--T-TTAT-AA
14800585 ATTAACTAATTTTTATAA
1 ATTAACTAATTTTTATAA
*
14800603 ATTAA-TAATTTATATAA
1 ATTAACTAATTTTTATAA
14800620 AT
1 AT
14800622 ATTATAGGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 13 0.36
18 7 0.19
19 4 0.11
20 1 0.03
22 11 0.31
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTAACTAATTTTTATAA
Found at i:14815036 original size:2 final size:2
Alignment explanation
Indices: 14815029--14815065 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
14815019 TTCTAACTTA
14815029 AT AT AT AT A- AT AT A- AT AT -T AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14815066 TACAAGGCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 3 0.09
2 29 0.91
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14815053 original size:19 final size:19
Alignment explanation
Indices: 14815029--14815067 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
14815019 TTCTAACTTA
14815029 ATATATATA-ATATAATATT
1 ATATATATATATAT-ATATT
14815048 ATATATATATATATATATT
1 ATATATATATATATATATT
14815067 A
1 A
14815068 CAAGGCCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATATATATATATATATT
Found at i:14815453 original size:28 final size:28
Alignment explanation
Indices: 14815403--14815466 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
14815393 TAATATCTCA
* **
14815403 TTTTAAAAAAATATAATTTATTTCAA-AT
1 TTTTAAAAAAATAAAATCAATTT-AATAT
*
14815431 TTTTAATAAAATAAAATCAATTTAATAT
1 TTTTAAAAAAATAAAATCAATTTAATAT
14815459 TTTCTAAA
1 TTT-TAAA
14815467 TCTACTTATC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 2 0.07
28 24 0.83
29 3 0.10
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (28 bp):
TTTTAAAAAAATAAAATCAATTTAATAT
Found at i:14816797 original size:18 final size:18
Alignment explanation
Indices: 14816771--14816822 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
14816761 AATATATAAA
* *
14816771 TAAAGTTATAAAATTATT
1 TAAATTTATAAAATAATT
*
14816789 TAAATTTATATAATAATT
1 TAAATTTATAAAATAATT
*
14816807 TAAATTTATATAATAA
1 TAAATTTATAAAATAA
14816823 CAATCATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TAAATTTATAAAATAATT
Found at i:14825433 original size:94 final size:94
Alignment explanation
Indices: 14825231--14825540 Score: 285
Period size: 94 Copynumber: 3.3 Consensus size: 94
14825221 AGAGCTAGTA
* * * * *
14825231 TAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGGGCTAGTGTAAGACGTGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
14825296 ATGCATCAGTCGCATCATGATAGTCCGTG
66 ATGCATCAGTCGCATCATGATAGTCCGTG
** * * * *
14825325 TAAGACCACATCTGGTACATGGCATCGGCATAGAGGTGAGTGCCAGTGTAAGACATGTTTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
* * *
14825390 ATGCATTAGCCTCG-ATGATGTTAG-CCAGTG
66 ATGCATCAG--TCGCATCATGATAGTCC-GTG
* * * ** *
14825420 TAAGA-CGTGTCTGGGACAT-GCATTGGC-TA-AGTTTCGTGCTAGTGTAAGACATGTCTGAGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
* * * *
14825481 ATGCATCAG-CAAGTATACACGAGAG-CTAGTG
66 ATGCATCAGTC--GCAT-CATGATAGTC-CGTG
14825512 TAAGACCATGTCTGGGACATGGCATCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
14825541 CTCGATGGAG
Statistics
Matches: 173, Mismatches: 33, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
88 1 0.01
90 1 0.01
91 36 0.21
92 15 0.09
93 20 0.12
94 81 0.47
95 16 0.09
96 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
ATGCATCAGTCGCATCATGATAGTCCGTG
Found at i:14826463 original size:55 final size:54
Alignment explanation
Indices: 14826348--14826466 Score: 132
Period size: 55 Copynumber: 2.2 Consensus size: 54
14826338 CTTAAACTTT
* * *
14826348 TAAA-TCAGTATTGTCCACGGTTAGGCCACACAGGCATGTGCCATAGCCATGTC
1 TAAAGTCAGTATTGCCCACGGGTAGGCCACACAGGCATGTGCCATAGCCATGCC
* * * * * *
14826401 TATAAGTCAGTATTGCCCACGGGTAGGTCACACGGGCGTGTGTCATGGCCGTGCCC
1 TA-AAGTCAGTATTGCCCACGGGTAGGCCACACAGGCATGTGCCATAGCCATG-CC
14826457 TAAAGTCAGT
1 TAAAGTCAGT
14826467 GTCGCACACG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.04
54 2 0.04
55 47 0.87
56 3 0.06
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (54 bp):
TAAAGTCAGTATTGCCCACGGGTAGGCCACACAGGCATGTGCCATAGCCATGCC
Found at i:14827143 original size:20 final size:19
Alignment explanation
Indices: 14827115--14827153 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
14827105 GTCTTGCAAC
14827115 AAGAAGTATCGATACCTTTG
1 AAGAAGTATCGATA-CTTTG
*
14827135 AAGAGGTATCGATACTTTG
1 AAGAAGTATCGATACTTTG
14827154 GGCATTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (19 bp):
AAGAAGTATCGATACTTTG
Found at i:14827564 original size:20 final size:19
Alignment explanation
Indices: 14827535--14827587 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
14827525 ACCAAGCATG
* *
14827535 GGTATGGATACTTGGTTCAA
1 GGTATTGATACTT-ATTCAA
* *
14827555 GGTATTGATACCTTATTGAG
1 GGTATTGATA-CTTATTCAA
14827575 GGTATTGATACTT
1 GGTATTGATACTT
14827588 TGGTCCCTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 3 0.11
20 22 0.79
21 3 0.11
ACGTcount: A:0.25, C:0.09, G:0.26, T:0.40
Consensus pattern (19 bp):
GGTATTGATACTTATTCAA
Found at i:14838822 original size:28 final size:28
Alignment explanation
Indices: 14838782--14838838 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
14838772 TCTAGCTGAA
14838782 ACATAGCTCCTAACTTCAATCTGCAACG
1 ACATAGCTCCTAACTTCAATCTGCAACG
14838810 ACATAGCTCCTAACTTCAATCTGCAACG
1 ACATAGCTCCTAACTTCAATCTGCAACG
14838838 A
1 A
14838839 GAGGCTACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.32, G:0.11, T:0.25
Consensus pattern (28 bp):
ACATAGCTCCTAACTTCAATCTGCAACG
Found at i:14840858 original size:43 final size:43
Alignment explanation
Indices: 14840792--14840875 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
14840782 TAGGAGTAAG
14840792 AATGGTCTCAATCAATGCATTAAGAATGATTTTGATATTATTA
1 AATGGTCTCAATCAATGCATTAAGAATGATTTTGATATTATTA
*
14840835 AATGGTCTCAATCAATGCCTTAAGAATGATTTTGATATTAT
1 AATGGTCTCAATCAATGCATTAAGAATGATTTTGATATTAT
14840876 GAAAATCATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (43 bp):
AATGGTCTCAATCAATGCATTAAGAATGATTTTGATATTATTA
Found at i:14841501 original size:28 final size:28
Alignment explanation
Indices: 14841458--14841516 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
14841448 GTTGTTTTCT
14841458 ACAAAAATAAGAAATATCTAATTTATTC
1 ACAAAAATAAGAAATATCTAATTTATTC
14841486 ACAAAAATAA-AGAATATCTAATTTATTC
1 ACAAAAATAAGA-AATATCTAATTTATTC
14841514 ACA
1 ACA
14841517 CTCTAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 1 0.03
28 29 0.97
ACGTcount: A:0.54, C:0.12, G:0.03, T:0.31
Consensus pattern (28 bp):
ACAAAAATAAGAAATATCTAATTTATTC
Found at i:14842591 original size:246 final size:252
Alignment explanation
Indices: 14842114--14842602 Score: 638
Period size: 246 Copynumber: 2.0 Consensus size: 252
14842104 TAACATTCTG
14842114 TCTTTAGAAAAGAGAGAGACATTCTTTAAATTACTTAATCTGAAATATCAAAACTATAAGATTTG
1 TCTTTAGAAAAGAGAGAGACATTCTTTAAATTACTTAATCTGAAATATCAAAACTATAAGA--TG
* * * *
14842179 AATATTTCAATAAATCAATGAATTCATGTACGCTTCTACATCTAATTTTGATTTTGATAATCTAA
64 AATATTTCAAGAAATCAATAAATTCATATACACTTCTACATCTAATTTTGATTTTGATAATCTAA
14842244 CATAACGTATCTTGATTTATTAAATTCTATATTAAAAATTTACGTTGCTAATATTATCTTCAAAA
129 CATAACGTATCTTGATTTATTAAATTCTATATTAAAAATTTACGTTGCTAATATTATCTTCAAAA
* *
14842309 CTAGATTGCATATACCTATCTAAATCTTTAAAAACAAATCGAAAAAAAGAGAGTCACCT
194 CTAGATTGCATATACATATATAAATCTTTAAAAACAAATCGAAAAAAAGAGAGTCACCT
*
14842368 TCTTTAG-AAAGAGAGAGTTATC-TTCTTTAAATTACTTAATCTGAAATATCAAAATTAT-A-A-
1 TCTTTAGAAAAGAGAGAG--A-CATTCTTTAAATTACTTAATCTGAAATATCAAAACTATAAGAT
* * *
14842428 G-AT-TTT-AAGAAATCAATAAATTTATATACACTTTTACATCTAATTTTG-TTTTTAGTAATCT
63 GAATATTTCAAGAAATCAATAAATTCATATACACTTCTACATCTAATTTTGATTTTGA-TAATCT
** * * * * *
14842489 AACATAATTTATC-TGATTTATTAAATTTTGTATTGAAATTTTAGGTTGCTAATATTATCTTCAA
127 AACATAACGTATCTTGATTTATTAAATTCTATATTAAAAATTTACGTTGCTAATATTATCTTCAA
* * * * * * *
14842553 AAGTAGATTGCATGTACATGTATAATTCTTTGAAAACAAATGGAAGAAAA
192 AACTAGATTGCATATACATATATAAATCTTTAAAAACAAATCGAAAAAAA
14842603 TGATTTCGGA
Statistics
Matches: 207, Mismatches: 24, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
246 92 0.44
247 53 0.26
248 3 0.01
249 2 0.01
250 1 0.00
253 11 0.05
254 8 0.04
255 36 0.17
256 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39
Consensus pattern (252 bp):
TCTTTAGAAAAGAGAGAGACATTCTTTAAATTACTTAATCTGAAATATCAAAACTATAAGATGAA
TATTTCAAGAAATCAATAAATTCATATACACTTCTACATCTAATTTTGATTTTGATAATCTAACA
TAACGTATCTTGATTTATTAAATTCTATATTAAAAATTTACGTTGCTAATATTATCTTCAAAACT
AGATTGCATATACATATATAAATCTTTAAAAACAAATCGAAAAAAAGAGAGTCACCT
Found at i:14843755 original size:37 final size:37
Alignment explanation
Indices: 14843705--14843797 Score: 118
Period size: 37 Copynumber: 2.5 Consensus size: 37
14843695 CATTTAATTC
* * *
14843705 ATTTTTAAAATTTTAAAAA-TATTTTTTTATATTTTT-T
1 ATTTTT-AAATTTTAAAAAGAATTTTTCTA-ATTTTTAA
14843742 ATATTTTAAATTTTAAAAAGAATTTTTCTAATTTTTAA
1 AT-TTTTAAATTTTAAAAAGAATTTTTCTAATTTTTAA
14843780 ATTTTTAAATTTTAAAAA
1 ATTTTTAAATTTTAAAAA
14843798 ATTAATTAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
37 36 0.72
38 14 0.28
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (37 bp):
ATTTTTAAATTTTAAAAAGAATTTTTCTAATTTTTAA
Found at i:14844618 original size:45 final size:45
Alignment explanation
Indices: 14844554--14844679 Score: 216
Period size: 45 Copynumber: 2.8 Consensus size: 45
14844544 TGGTGGTGGC
* *
14844554 GGAGGAGCTCCATATGAAGGATAACCAGAAAAAGATTAGGGTGAT
1 GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTAGGGTGAT
*
14844599 GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTGGGGTGAT
1 GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTAGGGTGAT
*
14844644 GGAGGAGCTCCATACGAAGGATAGCCAGAAAGAGAT
1 GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGAT
14844680 GGTGATGGCA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 77 1.00
ACGTcount: A:0.38, C:0.13, G:0.33, T:0.15
Consensus pattern (45 bp):
GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTAGGGTGAT
Found at i:14845000 original size:45 final size:45
Alignment explanation
Indices: 14844936--14845061 Score: 207
Period size: 45 Copynumber: 2.8 Consensus size: 45
14844926 TGGTGGTGGC
* *
14844936 GGAGGAGCTCCATATGAAGGATAGCTAGAAAAAGATTGGGGTGAT
1 GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTGGGGTGAT
*
14844981 GGAGGAGCTCCATACGAAGGGTAGCCAGAAAAAGATTGGGGTGAT
1 GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTGGGGTGAT
* *
14845026 GGAGGAGCTCCATACGAAGGATAACCAGAAAGAGAT
1 GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGAT
14845062 GGTGATGGCA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.37, C:0.13, G:0.35, T:0.16
Consensus pattern (45 bp):
GGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTGGGGTGAT
Found at i:14845216 original size:382 final size:382
Alignment explanation
Indices: 14844510--14845255 Score: 1420
Period size: 382 Copynumber: 2.0 Consensus size: 382
14844500 GGTGGAGCTC
14844510 TATATGAAGGATAGGTGGAAATAGACGAGGGTGGTGGTGGTGGCGGAGGAGCTCCATATGAAGGA
1 TATATGAAGGATAGGTGGAAATAGACGAGGGTGGTGGTGGTGGCGGAGGAGCTCCATATGAAGGA
14844575 TAACCAGAAAAAGATTAGGGTGATGGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTGGGG
66 TAACCAGAAAAAGATTAGGGTGATGGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTGGGG
* *
14844640 TGATGGAGGAGCTCCATACGAAGGATAGCCAGAAAGAGATGGTGATGGCAAGAGTGCACTAGAAT
131 TGATGGAGGAGCTCCATACGAAGGATAACCAGAAAGAGATGGTGATGGCAAGAATGCACTAGAAT
14844705 CCTCCCCTAAAACCATGTAATCAAGGTTGAAGGCTGATATCCAAATCGCCACAAGGATGACAAAT
196 CCTCCCCTAAAACCATGTAATCAAGGTTGAAGGCTGATATCCAAATCGCCACAAGGATGACAAAT
14844770 GCTGGAATCCTTGACTAAAGAAAGTTTCGCTTCAGAAAAAAAGAAGAAACCGATTGTTTAGTCAA
261 GCTGGAATCCTTGACTAAAGAAAGTTTCGCTTCAGAAAAAAAGAAGAAACCGATTGTTTAGTCAA
14844835 GGGGAAAGAATCTGACAACGAGTGAGTTTTATGGAATTGCAAAACGTAAAGACACTT
326 GGGGAAAGAATCTGACAACGAGTGAGTTTTATGGAATTGCAAAACGTAAAGACACTT
14844892 TATATGAAGGATAGGTGGAAATAGACGAGGGTGGTGGTGGTGGCGGAGGAGCTCCATATGAAGGA
1 TATATGAAGGATAGGTGGAAATAGACGAGGGTGGTGGTGGTGGCGGAGGAGCTCCATATGAAGGA
* * * *
14844957 TAGCTAGAAAAAGATTGGGGTGATGGAGGAGCTCCATACGAAGGGTAGCCAGAAAAAGATTGGGG
66 TAACCAGAAAAAGATTAGGGTGATGGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTGGGG
*
14845022 TGATGGAGGAGCTCCATACGAAGGATAACCAGAAAGAGATGGTGATGGCAAGAATGCATTAGAAT
131 TGATGGAGGAGCTCCATACGAAGGATAACCAGAAAGAGATGGTGATGGCAAGAATGCACTAGAAT
*
14845087 CCTCCCCTAAAACCATGTAATCAAGGTTGAAGGCTGATATCCAAATCGCCACAAGGATGGCAAAT
196 CCTCCCCTAAAACCATGTAATCAAGGTTGAAGGCTGATATCCAAATCGCCACAAGGATGACAAAT
14845152 GCTGGAATCCTTGACTAAAGAAAGTTTCGCTTCAGAAAAAAAGAAGAAACCGATTGTTTAGTCAA
261 GCTGGAATCCTTGACTAAAGAAAGTTTCGCTTCAGAAAAAAAGAAGAAACCGATTGTTTAGTCAA
14845217 GGGGAAAGAATCTGACAACGAGTGAGTTTTATGGAATTG
326 GGGGAAAGAATCTGACAACGAGTGAGTTTTATGGAATTG
14845256 AAACGCCGCA
Statistics
Matches: 356, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
382 356 1.00
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.20
Consensus pattern (382 bp):
TATATGAAGGATAGGTGGAAATAGACGAGGGTGGTGGTGGTGGCGGAGGAGCTCCATATGAAGGA
TAACCAGAAAAAGATTAGGGTGATGGAGGAGCTCCATACGAAGGATAGCCAGAAAAAGATTGGGG
TGATGGAGGAGCTCCATACGAAGGATAACCAGAAAGAGATGGTGATGGCAAGAATGCACTAGAAT
CCTCCCCTAAAACCATGTAATCAAGGTTGAAGGCTGATATCCAAATCGCCACAAGGATGACAAAT
GCTGGAATCCTTGACTAAAGAAAGTTTCGCTTCAGAAAAAAAGAAGAAACCGATTGTTTAGTCAA
GGGGAAAGAATCTGACAACGAGTGAGTTTTATGGAATTGCAAAACGTAAAGACACTT
Found at i:14845349 original size:41 final size:40
Alignment explanation
Indices: 14845273--14845368 Score: 131
Period size: 41 Copynumber: 2.4 Consensus size: 40
14845263 GCAAAAATTA
*
14845273 TAAAACACGGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
**
14845314 TAAAAACAGAGCAATAGCGGCGTTTTTTA-TTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG--TTTTACCAAAAACGCCGC
14845355 TAAAAACAGAGCAA
1 TAAAAACAGAGCAA
14845369 CAAAACGCCG
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 16 0.32
41 29 0.58
42 5 0.10
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.18
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGC
Found at i:14845379 original size:25 final size:25
Alignment explanation
Indices: 14845345--14845392 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14845335 GTTTTTTATT
*
14845345 AAAACGCCGCTAAAAACAGAGCAAC
1 AAAACGCCGCTAAAAACAAAGCAAC
14845370 AAAACGCCGCTAAAAACAAAGCA
1 AAAACGCCGCTAAAAACAAAGCA
14845393 TTAGCGGCGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.27, G:0.15, T:0.04
Consensus pattern (25 bp):
AAAACGCCGCTAAAAACAAAGCAAC
Done.