Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 54 of 316
Found at i:15772302 original size:43 final size:42
Alignment explanation
Indices: 15772250--15772471 Score: 234
Period size: 43 Copynumber: 5.2 Consensus size: 42
15772240 ATCTGCCAAA
**
15772250 TTTAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTT-TCCAAAAAGCGCCGCTAAAAGCCTTGACC
* * *
15772293 TTTAGCGGCGGTTTTCCCACAAGCGCCGCCAAAAGCCTTGACC
1 TTTAGCGGC-GTTTTCCAAAAAGCGCCGCTAAAAGCCTTGACC
* *
15772336 TTTAGCGGCGGTTTTCCCACAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGC-GTTTTCCAAAAAGCGCCGCTAAAAGCCTTGACC
** *
15772379 TTTAG-GGTATTTTTCCTACAAA-CGCCGCTAAAAGCCTTGACC
1 TTTAGCGG-CGTTTTCC-AAAAAGCGCCGCTAAAAGCCTTGACC
* * * *
15772421 TTTAGTGGCGCTTTTTCTAGAAA-CGCCGCTAAAAACCTTGACC
1 TTTAGCGGCG--TTTTCCAAAAAGCGCCGCTAAAAGCCTTGACC
15772464 TTTAGCGG
1 TTTAGCGG
15772472 TGCTTTTTTC
Statistics
Matches: 156, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
42 33 0.21
43 114 0.73
44 9 0.06
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (42 bp):
TTTAGCGGCGTTTTCCAAAAAGCGCCGCTAAAAGCCTTGACC
Found at i:15772448 original size:85 final size:86
Alignment explanation
Indices: 15772273--15772471 Score: 274
Period size: 85 Copynumber: 2.3 Consensus size: 86
15772263 GTAAAAAAAG
* *
15772273 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGGTTTTCCCACAAGCGCCGCCAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCAGTTTTCCCACAAACGCCGCCAAAAGCCTTGACCTT
* *
15772338 TAGCGGCGGTTTTCCCACAAG
66 TAGCGGCGCTTTTCCCACAAA
* * * *
15772359 CGCCGCTAAAAGCCTTGACCTTTAG-GGTATTTTTCCTACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCAGTTTTCCCACAAACGCCGCCAAAAGCCTTGACCTT
* * * *
15772423 TAGTGGCGCTTTTTCTAGAAA
66 TAGCGGCGCTTTTCCCACAAA
*
15772444 CGCCGCTAAAAACCTTGACCTTTAGCGG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGG
15772472 TGCTTTTTTC
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 72 0.73
86 27 0.27
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (86 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCAGTTTTCCCACAAACGCCGCCAAAAGCCTTGACCTT
TAGCGGCGCTTTTCCCACAAA
Found at i:15772477 original size:43 final size:43
Alignment explanation
Indices: 15772273--15772479 Score: 265
Period size: 43 Copynumber: 4.8 Consensus size: 43
15772263 GTAAAAAAAG
* * *
15772273 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGGTTTTCCCACAAG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCACAAA
* * * *
15772316 CGCCGCCAAAAGCCTTGACCTTTAGCGGCGGTTTTCCCACAAG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCACAAA
**
15772359 CGCCGCTAAAAGCCTTGACCTTTAG-GG-TATTTTTCCTACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCC-ACAAA
* * *
15772401 CGCCGCTAAAAGCCTTGACCTTTAGTGGCGCTTTTTCTAGAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCACAAA
* *
15772444 CGCCGCTAAAAACCTTGACCTTTAGCGGTGCTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTT
15772480 TCCAATAAAT
Statistics
Matches: 148, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
41 6 0.04
42 31 0.21
43 105 0.71
44 6 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCACAAA
Found at i:15775541 original size:37 final size:36
Alignment explanation
Indices: 15775487--15775567 Score: 85
Period size: 37 Copynumber: 2.2 Consensus size: 36
15775477 ATATTTTTAA
15775487 AATTTTTAAAATTTT-AAATTAGTAAAAATAAAATTAT
1 AATTTTTAAAATTTTAAAATTA-TAAAAATAAAATT-T
* **
15775524 AATTTTT-AATTTATTAAAAATTATAAAAATTTAATTT
1 AATTTTTAAAATT-TT-AAAATTATAAAAATAAAATTT
15775561 AATTTTT
1 AATTTTT
15775568 TTAAAATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
36 4 0.11
37 17 0.45
38 11 0.29
39 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (36 bp):
AATTTTTAAAATTTTAAAATTATAAAAATAAAATTT
Found at i:15775589 original size:15 final size:16
Alignment explanation
Indices: 15775569--15775605 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
15775559 TTAATTTTTT
15775569 TAAAATATAAAAAT-A
1 TAAAATATAAAAATAA
*
15775584 TAAAATATTAAAATAA
1 TAAAATATAAAAATAA
15775600 TAAAAT
1 TAAAAT
15775606 TATATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
TAAAATATAAAAATAA
Found at i:15787280 original size:40 final size:40
Alignment explanation
Indices: 15787250--15787419 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
15787240 GGACTAAGAT
* *
15787250 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
15787290 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
15787330 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
15787370 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
15787409 CCGAAGGCATT
1 CCGAAGGCATT
15787420 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:15787346 original size:80 final size:79
Alignment explanation
Indices: 15787197--15787419 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
15787187 TTGAATGCTG
* * * ** * * * * *
15787197 TCCGGGATAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
15787261 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
15787277 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
15787342 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
15787357 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
15787420 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:15787439 original size:79 final size:80
Alignment explanation
Indices: 15787272--15787454 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
15787262 GTGCGAGATA
* * *
15787272 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
15787337 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
15787352 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
15787416 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
15787431 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
15787455 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:15789575 original size:34 final size:34
Alignment explanation
Indices: 15789519--15789594 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
15789509 TGTTTTTATG
* **
15789519 TTTAAATCGATTGTAATATTGAAATATTGTTTCT
1 TTTAAATAGATTGTAATATTGAAATATTACTTCT
* * *
15789553 TTTGAATAGATTGTTATGTTGAAATATTACTTCT
1 TTTAAATAGATTGTAATATTGAAATATTACTTCT
15789587 TTTAAATA
1 TTTAAATA
15789595 AACTATTTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (34 bp):
TTTAAATAGATTGTAATATTGAAATATTACTTCT
Found at i:15793666 original size:21 final size:20
Alignment explanation
Indices: 15793624--15793666 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
15793614 TGCCTTTCTT
*
15793624 TTTCTTTTTCTTTGTTTTTA
1 TTTCTTTTTCTTTGTTTATA
15793644 TTTCTTTATTCTTT-TATTATA
1 TTTCTTT-TTCTTTGT-TTATA
15793665 TT
1 TT
15793667 ATTAACTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTCTTTTTCTTTGTTTATA
Found at i:15793690 original size:12 final size:15
Alignment explanation
Indices: 15793658--15793717 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
15793648 TTTATTCTTT
15793658 TATTATATTATTAAC
1 TATTATATTATTAAC
15793673 TATTATATT-TT-AC
1 TATTATATTATTAAC
15793686 TTTATTATATTATTTAA-
1 --TATTATATTA-TTAAC
15793703 TAATTATAATTATTA
1 T-ATTAT-ATTATTA
15793718 TTTCTTATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 2 0.05
14 2 0.05
15 19 0.50
16 8 0.21
17 6 0.16
18 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTATATTATTAAC
Found at i:15803759 original size:8 final size:8
Alignment explanation
Indices: 15803746--15803770 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
15803736 AATTTAATTA
15803746 ATAAAGAT
1 ATAAAGAT
15803754 ATAAAGAT
1 ATAAAGAT
15803762 ATAAAGAT
1 ATAAAGAT
15803770 A
1 A
15803771 ACAACAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (8 bp):
ATAAAGAT
Found at i:15804944 original size:17 final size:18
Alignment explanation
Indices: 15804919--15804952 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15804909 AAAGTAATTA
15804919 AAATAAAATAAA-AAAAG
1 AAATAAAATAAAGAAAAG
*
15804936 AAATGAAATAAAGAAAA
1 AAATAAAATAAAGAAAA
15804953 AGGAAAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (18 bp):
AAATAAAATAAAGAAAAG
Found at i:15807417 original size:68 final size:66
Alignment explanation
Indices: 15807203--15807417 Score: 199
Period size: 67 Copynumber: 3.3 Consensus size: 66
15807193 CATAATTTTG
* * * *
15807203 GCTCTCTTGTACACATGGTGAACACTTAGTATCACCCATGTGACCTAGC--CAC-TTTATCTCGT
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCCATTTATCTCGT
15807265 A
66 A
** * * * * * * *
15807266 GCTCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTA--CATTTATCT
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACCCATTTATCT
15807329 CGTA
63 CGTA
* *
15807333 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCCCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTA-CCCAT-TTATCT
15807397 CGTA
63 CGTA
15807401 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
15807418 ATGTGCACTC
Statistics
Matches: 119, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
63 18 0.15
64 24 0.20
66 21 0.18
67 32 0.27
68 23 0.19
69 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.32
Consensus pattern (66 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCCATTTATCTCGT
A
Found at i:15807446 original size:68 final size:68
Alignment explanation
Indices: 15807326--15807452 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
15807316 GCTACATTTA
* * * *
15807326 TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCCCATA
1 TCTCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACCCCATA
15807391 ATG
66 ATG
* * *
15807394 TCTCGTAGCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGCGACCTAGCTAC
15807453 ATACCATCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
67 1 0.02
68 48 0.96
69 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACCCCATA
ATG
Found at i:15809492 original size:18 final size:18
Alignment explanation
Indices: 15809471--15809509 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
15809461 ACTGAATAGT
*
15809471 TGACTGTTACAGAATAAA
1 TGACTGATACAGAATAAA
*
15809489 TGACTGATACTGAATAAA
1 TGACTGATACAGAATAAA
15809507 TGA
1 TGA
15809510 ATATTACTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (18 bp):
TGACTGATACAGAATAAA
Found at i:15809517 original size:18 final size:19
Alignment explanation
Indices: 15809477--15809519 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
15809467 TAGTTGACTG
* *
15809477 TTACAGAATAAATGACTGA
1 TTACTGAATAAATGAATGA
15809496 -TACTGAATAAATGAAT-A
1 TTACTGAATAAATGAATGA
15809513 TTACTGA
1 TTACTGA
15809520 TTAACCGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (19 bp):
TTACTGAATAAATGAATGA
Found at i:15813188 original size:13 final size:13
Alignment explanation
Indices: 15813170--15813198 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15813160 TAAGTAAAAT
15813170 AAATGAAATAAAG
1 AAATGAAATAAAG
15813183 AAATGAAATAAAG
1 AAATGAAATAAAG
15813196 AAA
1 AAA
15813199 AAGGAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAATGAAATAAAG
Found at i:15817851 original size:61 final size:61
Alignment explanation
Indices: 15817758--15817920 Score: 174
Period size: 60 Copynumber: 2.7 Consensus size: 61
15817748 ACTAGGTCTA
* * *
15817758 AGCCCTATTCAGAAATCAGAGT-TATCTAGGCCTTAGCCCATATCACTATTAATCTGGGCCAT
1 AGCCCTATT-ACAAATCAGAGTATA-CTGGGCCTTAGCCCATATCACTATCAATCTGGGCCAT
* * * *
15817820 AGCCC-CTTACAATATCAGAGTATACTGGGCC-TAGCCCATATCAGTATCAATCTGGGTCGT
1 AGCCCTATTACAA-ATCAGAGTATACTGGGCCTTAGCCCATATCACTATCAATCTGGGCCAT
* *
15817880 AGCCCTATTACAAGTCA-AGATATATTGGGCCTT-GCCCATAT
1 AGCCCTATTACAAATCAGAG-TATACTGGGCCTTAGCCCATAT
15817921 TAACACAGTT
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
59 2 0.02
60 54 0.63
61 23 0.27
62 7 0.08
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (61 bp):
AGCCCTATTACAAATCAGAGTATACTGGGCCTTAGCCCATATCACTATCAATCTGGGCCAT
Found at i:15821498 original size:13 final size:13
Alignment explanation
Indices: 15821480--15821508 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15821470 TAATTAAAAT
15821480 AAATGAAATAAAG
1 AAATGAAATAAAG
15821493 AAATGAAATAAAG
1 AAATGAAATAAAG
15821506 AAA
1 AAA
15821509 AAGGAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAATGAAATAAAG
Found at i:15822630 original size:6 final size:6
Alignment explanation
Indices: 15822619--15822645 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15822609 TGTGTACCGC
15822619 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
15822646 ACTTACAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:15826248 original size:19 final size:19
Alignment explanation
Indices: 15826224--15826262 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
15826214 TACTGAAAGT
15826224 TAAAGTCACATGGGAAGAA
1 TAAAGTCACATGGGAAGAA
15826243 TAAAGTCACATGGGAAGAA
1 TAAAGTCACATGGGAAGAA
15826262 T
1 T
15826263 TATCAGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.10, G:0.26, T:0.18
Consensus pattern (19 bp):
TAAAGTCACATGGGAAGAA
Found at i:15827888 original size:13 final size:13
Alignment explanation
Indices: 15827870--15827894 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15827860 TAAAATAAAA
15827870 GAAATAAAGAAAT
1 GAAATAAAGAAAT
15827883 GAAATAAAGAAA
1 GAAATAAAGAAA
15827895 AAGGAAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (13 bp):
GAAATAAAGAAAT
Found at i:15832008 original size:33 final size:33
Alignment explanation
Indices: 15831971--15832040 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
15831961 TATTTATACA
15831971 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
15832004 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
15832037 ATTA
1 ATTA
15832041 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:15854497 original size:38 final size:38
Alignment explanation
Indices: 15854437--15854525 Score: 135
Period size: 38 Copynumber: 2.3 Consensus size: 38
15854427 CATTGTGAAC
* *
15854437 AGCCTCACTAACAATGATACACACA-CCCAAAAAAACAT
1 AGCCCCACCAACAATGATACACACACCCCAAAAAAA-AT
*
15854475 AGCCCCACCAACAATGATACACACACCCCTAAAAAAAT
1 AGCCCCACCAACAATGATACACACACCCCAAAAAAAAT
15854513 AGCCCCACCAACA
1 AGCCCCACCAACA
15854526 TGCATATTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 38 0.81
39 9 0.19
ACGTcount: A:0.47, C:0.37, G:0.06, T:0.10
Consensus pattern (38 bp):
AGCCCCACCAACAATGATACACACACCCCAAAAAAAAT
Found at i:15854601 original size:39 final size:40
Alignment explanation
Indices: 15854547--15854647 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 40
15854537 AAAAAAATAC
*
15854547 TCACTGCATGTATATTAAAAAA-AGGCAACACACCGACAA
1 TCACTGCATGTATATTAAAAAATAGGCAACACACCAACAA
* * *
15854586 TCACTGCATGCATATTAAAAAATAGTCAACACACCAATAA
1 TCACTGCATGTATATTAAAAAATAGGCAACACACCAACAA
*
15854626 TCAATGCATGTATATTAAAAAA
1 TCACTGCATGTATATTAAAAAA
15854648 CATTCACTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
39 21 0.38
40 34 0.62
ACGTcount: A:0.48, C:0.20, G:0.10, T:0.23
Consensus pattern (40 bp):
TCACTGCATGTATATTAAAAAATAGGCAACACACCAACAA
Found at i:15855063 original size:26 final size:26
Alignment explanation
Indices: 15855034--15855087 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15855024 GACCAGTGAG
*
15855034 TAGGGCTCTTTTCCTTCAACCAATCA
1 TAGGGCTCTTTTCCATCAACCAATCA
*
15855060 TAGGGTTCTTTTCCATCAACCAATCA
1 TAGGGCTCTTTTCCATCAACCAATCA
15855086 TA
1 TA
15855088 ATCATGGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (26 bp):
TAGGGCTCTTTTCCATCAACCAATCA
Found at i:15857973 original size:17 final size:17
Alignment explanation
Indices: 15857951--15857998 Score: 96
Period size: 17 Copynumber: 2.8 Consensus size: 17
15857941 CGTAAGCATG
15857951 AAAATTTTATTTTGGAC
1 AAAATTTTATTTTGGAC
15857968 AAAATTTTATTTTGGAC
1 AAAATTTTATTTTGGAC
15857985 AAAATTTTATTTTG
1 AAAATTTTATTTTG
15857999 TTTTCGTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.50
Consensus pattern (17 bp):
AAAATTTTATTTTGGAC
Found at i:15862590 original size:25 final size:25
Alignment explanation
Indices: 15862562--15862640 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
15862552 CTAATGGCCG
15862562 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
15862587 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
15862609 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
15862634 ATGTGAT
1 ATGTGAT
15862641 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:15862612 original size:47 final size:47
Alignment explanation
Indices: 15862546--15863021 Score: 781
Period size: 47 Copynumber: 10.1 Consensus size: 47
15862536 GAAATGATAG
15862546 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15862593 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15862640 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
15862689 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
15862736 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
15862783 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
15862830 TAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15862877 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15862924 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
15862971 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15863018 TAAG
1 TAAG
15863022 TCCCGAAGGG
Statistics
Matches: 407, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 360 0.88
49 47 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:15864801 original size:25 final size:25
Alignment explanation
Indices: 15864763--15864826 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
15864753 TCTGTAAAAT
*
15864763 CAATTGAAATGGTGCATGGT-GGAAA
1 CAATTGAAACGGTGCATGGTAGG-AA
*
15864788 CAATTGAAACGGTGCGTGGTAGGAA
1 CAATTGAAACGGTGCATGGTAGGAA
15864813 CAATTGAAACGGTG
1 CAATTGAAACGGTG
15864827 AGTTTTGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 34 0.94
26 2 0.06
ACGTcount: A:0.34, C:0.11, G:0.33, T:0.22
Consensus pattern (25 bp):
CAATTGAAACGGTGCATGGTAGGAA
Found at i:15865990 original size:7 final size:7
Alignment explanation
Indices: 15865978--15866106 Score: 66
Period size: 7 Copynumber: 18.1 Consensus size: 7
15865968 ACTAATTAAT
15865978 CTAAACC
1 CTAAACC
15865985 CTAAACC
1 CTAAACC
*
15865992 TCTTAACTC
1 -CTAAAC-C
*
15866001 CT-ATCC
1 CTAAACC
*
15866007 CATAAACA
1 C-TAAACC
15866015 CTAAACC
1 CTAAACC
15866022 CTAAACC
1 CTAAACC
* *
15866029 CTTACCC
1 CTAAACC
*
15866036 CTTAACC
1 CTAAACC
*
15866043 CCAAACC
1 CTAAACC
*
15866050 CTTACACC
1 C-TAAACC
*
15866058 TTAAACTC
1 CTAAAC-C
15866066 C--AACC
1 CTAAACC
*
15866071 CTAACCC
1 CTAAACC
15866078 CTAAACC
1 CTAAACC
* *
15866085 TTAAATC
1 CTAAACC
* *
15866092 ATAATCC
1 CTAAACC
15866099 CTAAACC
1 CTAAACC
15866106 C
1 C
15866107 ATAATTCATC
Statistics
Matches: 90, Mismatches: 24, Indels: 16
0.69 0.18 0.12
Matches are distributed among these distances:
5 2 0.02
6 5 0.06
7 67 0.74
8 15 0.17
9 1 0.01
ACGTcount: A:0.36, C:0.42, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:15866186 original size:46 final size:46
Alignment explanation
Indices: 15866133--15866226 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
15866123 CTTCAAATAC
* * *
15866133 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
15866179 TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
1 TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
15866225 TA
1 TA
15866227 AACCATAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.45, C:0.26, G:0.02, T:0.28
Consensus pattern (46 bp):
TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
Found at i:15866200 original size:7 final size:7
Alignment explanation
Indices: 15866144--15866241 Score: 63
Period size: 7 Copynumber: 13.4 Consensus size: 7
15866134 AGTTAACTCC
*
15866144 TAAACCT
1 TAAACCA
*
15866151 TAAACCC
1 TAAACCA
15866158 TAAACCA
1 TAAACCA
* * *
15866165 TATATCT
1 TAAACCA
15866172 TAAACCA
1 TAAACCA
15866179 TAGTTAACTCA
1 TA---AAC-CA
15866190 TAAACCA
1 TAAACCA
*
15866197 TAAACCC
1 TAAACCA
15866204 TAAACCA
1 TAAACCA
* *
15866211 TATA-TA
1 TAAACCA
15866217 TTAAACCA
1 -TAAACCA
15866225 TAAACCA
1 TAAACCA
*
15866232 TAAACTA
1 TAAACCA
15866239 TAA
1 TAA
15866242 TGATAATTAA
Statistics
Matches: 70, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
6 1 0.01
7 58 0.83
8 4 0.06
10 3 0.04
11 4 0.06
ACGTcount: A:0.49, C:0.24, G:0.01, T:0.26
Consensus pattern (7 bp):
TAAACCA
Found at i:15866555 original size:40 final size:42
Alignment explanation
Indices: 15866398--15866556 Score: 182
Period size: 41 Copynumber: 3.9 Consensus size: 42
15866388 GTTATATGAC
* ** *
15866398 TTTTAACGGCGTTTTT-CCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTGGTAAAAGCGCCGCTAATGCTCTGAT
* **
15866439 TTTTAGCGGCGCTTTT-CCAAAAGCGCCGCTAATGCTCTGAT
1 TTTTAGCGGCGTTTTTGGTAAAAGCGCCGCTAATGCTCTGAT
* * *
15866480 TTTTAGCGGCGTTTTTGGTAAAAACGCTGCTATTGCTCT-AT
1 TTTTAGCGGCGTTTTTGGTAAAAGCGCCGCTAATGCTCTGAT
* *
15866521 TTTTAGTGGCGTTTTTGGTAAAA-CGCCGCTATTGCT
1 TTTTAGCGGCGTTTTTGGTAAAAGCGCCGCTAATGCT
15866557 ATGTGTTTTA
Statistics
Matches: 106, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
40 12 0.11
41 77 0.73
42 17 0.16
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (42 bp):
TTTTAGCGGCGTTTTTGGTAAAAGCGCCGCTAATGCTCTGAT
Found at i:15867041 original size:48 final size:48
Alignment explanation
Indices: 15866925--15867033 Score: 173
Period size: 48 Copynumber: 2.3 Consensus size: 48
15866915 TTGGATACAA
* * * *
15866925 ACAATGGCAAATATACACAATAATCATCAGTTTGATACTAGTATTCAT
1 ACAATGGCAGATATACACAATAAACATCAGTTTGATAATAGCATTCAT
*
15866973 ACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCAT
1 ACAATGGCAGATATACACAATAAACATCAGTTTGATAATAGCATTCAT
15867021 ACAATGGCAGATA
1 ACAATGGCAGATA
15867034 CAAACAATGG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (48 bp):
ACAATGGCAGATATACACAATAAACATCAGTTTGATAATAGCATTCAT
Found at i:15867041 original size:64 final size:64
Alignment explanation
Indices: 15866973--15867105 Score: 230
Period size: 64 Copynumber: 2.1 Consensus size: 64
15866963 TAGTATTCAT
* * * *
15866973 ACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGATACAA
1 ACAATGGCAAATATACAAAATAAACATCAGTTTGATAATAGCATTCATACAATGGCAAATACAA
15867037 ACAATGGCAAATATACAAAATAAACATCAGTTTGATAATAGCATTCATACAATGGCAAATACAA
1 ACAATGGCAAATATACAAAATAAACATCAGTTTGATAATAGCATTCATACAATGGCAAATACAA
15867101 ACAAT
1 ACAAT
15867106 AAACATCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.23
Consensus pattern (64 bp):
ACAATGGCAAATATACAAAATAAACATCAGTTTGATAATAGCATTCATACAATGGCAAATACAA
Found at i:15867206 original size:6 final size:6
Alignment explanation
Indices: 15867197--15867300 Score: 61
Period size: 6 Copynumber: 17.8 Consensus size: 6
15867187 TAACAAATAC
** * *
15867197 AATCAA AATCAA AAT--A ACCCTA AATCGA AATCAA AATCAA AATCAA
1 AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA
* * ** * * ** *
15867243 ATTC-A AATCCA AATTGA GATCAA AATCGA AATTGA AATCAA AATCTA
1 AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA
*
15867290 AATCAG AATCA
1 AATCAA AATCA
15867301 GTGAGTGTTT
Statistics
Matches: 74, Mismatches: 21, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
4 2 0.03
5 4 0.05
6 68 0.92
ACGTcount: A:0.56, C:0.17, G:0.06, T:0.21
Consensus pattern (6 bp):
AATCAA
Found at i:15867268 original size:18 final size:18
Alignment explanation
Indices: 15867218--15867292 Score: 73
Period size: 18 Copynumber: 4.2 Consensus size: 18
15867208 AAATAACCCT
*
15867218 AAATCGAAATCAAAAT-C
1 AAATTGAAATCAAAATCC
* *
15867235 AAAATCAAATTC-AAATCC
1 AAATTGAAA-TCAAAATCC
* *
15867253 AAATTGAGATCAAAATCG
1 AAATTGAAATCAAAATCC
*
15867271 AAATTGAAATCAAAATCT
1 AAATTGAAATCAAAATCC
15867289 AAAT
1 AAAT
15867293 CAGAATCAGT
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
17 12 0.26
18 34 0.74
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.23
Consensus pattern (18 bp):
AAATTGAAATCAAAATCC
Found at i:15867327 original size:12 final size:12
Alignment explanation
Indices: 15867310--15867369 Score: 59
Period size: 12 Copynumber: 5.0 Consensus size: 12
15867300 AGTGAGTGTT
*
15867310 TCAAAATTGAAA
1 TCAAAATTAAAA
15867322 TCAAAATTAAAA
1 TCAAAATTAAAA
*
15867334 T-AGAAATCAAAA
1 TCA-AAATTAAAA
**
15867346 TCAAAATCGAAA
1 TCAAAATTAAAA
*
15867358 TTAAAATTAAAA
1 TCAAAATTAAAA
15867370 CCGAAATAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
11 1 0.03
12 38 0.95
13 1 0.03
ACGTcount: A:0.63, C:0.08, G:0.05, T:0.23
Consensus pattern (12 bp):
TCAAAATTAAAA
Found at i:15867328 original size:6 final size:6
Alignment explanation
Indices: 15867319--15867369 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
15867309 TTCAAAATTG
* * * *
15867319 AAATCA AAATTA AAAT-A GAAATCA AAATCA AAATCG AAATTA AAATTA
1 AAATCA AAATCA AAATCA -AAATCA AAATCA AAATCA AAATCA AAATCA
15867367 AAA
1 AAA
15867370 CCGAAATAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 1 0.03
6 37 0.95
7 1 0.03
ACGTcount: A:0.67, C:0.08, G:0.04, T:0.22
Consensus pattern (6 bp):
AAATCA
Found at i:15867374 original size:18 final size:18
Alignment explanation
Indices: 15867312--15867376 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
15867302 TGAGTGTTTC
*
15867312 AAAATTGAAATCAAAATT
1 AAAATCGAAATCAAAATT
* *
15867330 AAAATAGAAATCAAAATC
1 AAAATCGAAATCAAAATT
*
15867348 AAAATCGAAATTAAAATT
1 AAAATCGAAATCAAAATT
*
15867366 AAAACCGAAAT
1 AAAATCGAAAT
15867377 AACCCTAGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.63, C:0.09, G:0.06, T:0.22
Consensus pattern (18 bp):
AAAATCGAAATCAAAATT
Found at i:15867954 original size:31 final size:30
Alignment explanation
Indices: 15867911--15867971 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 30
15867901 TTAGTAACTA
*
15867911 TTTTGTTACTTTTTTATAACGTTG-GTGACTG
1 TTTTGTTACTTTTTGA-AA-GTTGAGTGACTG
15867942 TTTTG-TAGCTTTTTGAAAGTTGAGTGACTG
1 TTTTGTTA-CTTTTTGAAAGTTGAGTGACTG
15867972 AAATGAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 4 0.15
30 11 0.41
31 12 0.44
ACGTcount: A:0.18, C:0.08, G:0.23, T:0.51
Consensus pattern (30 bp):
TTTTGTTACTTTTTGAAAGTTGAGTGACTG
Found at i:15869232 original size:19 final size:19
Alignment explanation
Indices: 15869208--15869249 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
15869198 AAGAAATAAA
15869208 CATGTATTATTGATTTCAC
1 CATGTATTATTGATTTCAC
15869227 CATGTATTATTGATTTCAC
1 CATGTATTATTGATTTCAC
15869246 CATG
1 CATG
15869250 GCAGTAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45
Consensus pattern (19 bp):
CATGTATTATTGATTTCAC
Found at i:15871864 original size:26 final size:26
Alignment explanation
Indices: 15871826--15871881 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
15871816 TCTATATTTA
** *
15871826 GTTTTCATATTCATTTTGGTATCTAT
1 GTTTTCATATTCAAATTGGTACCTAT
* *
15871852 GTTTTCTTTTTCAAATTGGTACCTAT
1 GTTTTCATATTCAAATTGGTACCTAT
15871878 GTTT
1 GTTT
15871882 AATTTTCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.57
Consensus pattern (26 bp):
GTTTTCATATTCAAATTGGTACCTAT
Found at i:15881200 original size:54 final size:53
Alignment explanation
Indices: 15881119--15881280 Score: 200
Period size: 54 Copynumber: 3.0 Consensus size: 53
15881109 CCATGGCAAC
*
15881119 ATGTGATATGTGATTTTCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
* **
15881172 ATGTGATCATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAGAC
1 ATGTGAT-ATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
* * * * * **
15881226 ATGTGATTATGTG-CTTCCATATAAGACCATATCTAGGATATGGCATTAGTGTG
1 ATGTGA-TATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
15881279 AT
1 AT
15881281 ATGTGCTACT
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
53 39 0.42
54 53 0.57
55 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (53 bp):
ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
Found at i:15881287 original size:47 final size:47
Alignment explanation
Indices: 15881227--15881362 Score: 184
Period size: 47 Copynumber: 2.9 Consensus size: 47
15881217 ATCGGAGACA
15881227 TGTGATTATGTGCTTCCATATAAGACCATATCTAGGATATGGCATTAG
1 TGTGA-TATGTGCTTCCATATAAGACCATATCTAGGATATGGCATTAG
* **
15881275 TGTGATATGTGCTACTGTATAAGACCATATCTAGGATATGGCATTAG
1 TGTGATATGTGCTTCCATATAAGACCATATCTAGGATATGGCATTAG
* * ** *
15881322 TGTGATATGTG-GTCCATGTAAGACCATGGCTAGGCTATGGC
1 TGTGATATGTGCTTCCATATAAGACCATATCTAGGATATGGC
15881363 TTCGGTGTGT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 22 0.29
47 50 0.65
48 5 0.06
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (47 bp):
TGTGATATGTGCTTCCATATAAGACCATATCTAGGATATGGCATTAG
Found at i:15885535 original size:19 final size:19
Alignment explanation
Indices: 15885489--15885536 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
15885479 GTATATATTT
15885489 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
15885507 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
15885526 TAAATTTTATT
1 TAAATTTTATT
15885537 CATATTCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:15886940 original size:40 final size:40
Alignment explanation
Indices: 15886889--15886974 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
15886879 GTCTCTAGCT
*
15886889 CGGATAGCATTCTAGCACGA-AGCCTGCAAGTCTTTAAGCC
1 CGGATAACATTCTAGCA-GATAGCCTGCAAGTCTTTAAGCC
* **
15886929 CGGATAACATTCTAGCATATAGCCTGCGGGTCTTTAAGCC
1 CGGATAACATTCTAGCAGATAGCCTGCAAGTCTTTAAGCC
15886969 CGGATA
1 CGGATA
15886975 CAATTCCTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.02
40 40 0.98
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CGGATAACATTCTAGCAGATAGCCTGCAAGTCTTTAAGCC
Found at i:15894753 original size:40 final size:40
Alignment explanation
Indices: 15894577--15894746 Score: 252
Period size: 40 Copynumber: 4.2 Consensus size: 40
15894567 GCGAGTCTCC
* * * * *
15894577 AGCCCGGATAGCATTCTAGCACGA-AGCTTGTGGGTCTTTA
1 AGCCCGGATAACATTCCAGCA-TATAGCCTGCGGGTCTTTA
* *
15894617 AGCCCGGATAACATTCCAGCAGATAGCCTGTGGGTCTTTA
1 AGCCCGGATAACATTCCAGCATATAGCCTGCGGGTCTTTA
15894657 AGCCCGGATAACATTCCAGCATATAGCCTGCGGGTCTTTA
1 AGCCCGGATAACATTCCAGCATATAGCCTGCGGGTCTTTA
*
15894697 AGCCCGGATAACATTCCAGCATATAGCCTGCAGGTCTTTA
1 AGCCCGGATAACATTCCAGCATATAGCCTGCGGGTCTTTA
15894737 AGCCCGGATA
1 AGCCCGGATA
15894747 CAATTCCTCA
Statistics
Matches: 123, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
39 2 0.02
40 121 0.98
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
AGCCCGGATAACATTCCAGCATATAGCCTGCGGGTCTTTA
Found at i:15896745 original size:26 final size:26
Alignment explanation
Indices: 15896709--15896792 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
15896699 TGATACAAAT
15896709 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
15896735 TGATAATAGGTTAGGTAAACGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15896761 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15896787 TGATAA
1 TGATAA
15896793 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:15898452 original size:27 final size:27
Alignment explanation
Indices: 15898411--15898577 Score: 237
Period size: 27 Copynumber: 6.2 Consensus size: 27
15898401 GAGGAAGCGT
*
15898411 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
15898438 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
15898465 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15898492 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15898519 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
15898547 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
15898573 TCTGG
1 TCTGG
15898578 CAGCCATGCT
Statistics
Matches: 129, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
26 5 0.04
27 109 0.84
28 15 0.12
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:15907487 original size:22 final size:22
Alignment explanation
Indices: 15907441--15907499 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
15907431 TCAAATTTCA
15907441 AAAATTAAACATAATATAATATTT
1 AAAA-TAAA-ATAATATAATATTT
* *
15907465 AACATAGAAATAA-ATATTATTT
1 AAAATA-AAATAATATAATATTT
15907487 AAAATAAAATAAT
1 AAAATAAAATAAT
15907500 TTTTTTAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 6 0.20
22 13 0.43
23 6 0.20
24 5 0.17
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAATAAAATAATATAATATTT
Found at i:15907571 original size:42 final size:43
Alignment explanation
Indices: 15907519--15907701 Score: 210
Period size: 43 Copynumber: 4.3 Consensus size: 43
15907509 GTTCGTGATT
15907519 TTTAGC-GCGTTTGTGAGAAAAGCGCCGCTAAAAGTCAT-GTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCATGGTC
* * * * * * *
15907560 TTTAGTGGCGTTTGTGTGAAAAGCGCGGCTAAAGGTTATGATT
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCATGGTC
* *
15907603 TTTAGCGGCGTTTTTTG-GAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCG-TTTGTGAGAAAAGCGCCGCTAAAAGTCATGGTC
* * * * *
15907646 TTTAGCGGCGCTTGTAAAAAAAGAGCCACTAAAAGTCATGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCATGGTC
15907689 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
15907702 TTTAAATAAA
Statistics
Matches: 117, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
41 5 0.04
42 31 0.26
43 76 0.65
44 5 0.04
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCATGGTC
Found at i:15909674 original size:29 final size:29
Alignment explanation
Indices: 15909623--15909689 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
15909613 CACCCTTAAA
* * * *
15909623 ATATTTGCACTATAGTCCTTCAACTTTTC
1 ATATTTACACTATAATCCCTCAAATTTTC
* *
15909652 ATATTTACACTTTAATCCCTCAAATTTTG
1 ATATTTACACTATAATCCCTCAAATTTTC
15909681 AGTATTTAC
1 A-TATTTAC
15909690 TCTTGGGCCA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 24 0.77
30 7 0.23
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.45
Consensus pattern (29 bp):
ATATTTACACTATAATCCCTCAAATTTTC
Found at i:15916901 original size:45 final size:43
Alignment explanation
Indices: 15916791--15916910 Score: 134
Period size: 43 Copynumber: 2.7 Consensus size: 43
15916781 GCTACAAGTT
* *
15916791 ACAATCCTTATCTCCTTGAAGTTGCAGTGGAGCAGGAAAGTAC
1 ACAATCCTTATCTCCTTGAAGTTGCAGTAGAGAAGGAAAGTAC
* * *
15916834 ACAAACCTTATCTCCCTGAAGTTGCAGTAGAGAAGGTTGAAATTAC
1 ACAATCCTTATCTCCTTGAAGTTGCAGTAGAGAA-G--GAAAGTAC
* * *
15916880 -CAATTCTTATCTCCTTTAAGTTCCAGTAGAG
1 ACAATCCTTATCTCCTTGAAGTTGCAGTAGAG
15916911 TAGATCAAAG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 30 0.47
44 1 0.02
45 26 0.41
46 7 0.11
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (43 bp):
ACAATCCTTATCTCCTTGAAGTTGCAGTAGAGAAGGAAAGTAC
Found at i:15918341 original size:13 final size:13
Alignment explanation
Indices: 15918325--15918349 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15918315 TGTTTGTTAT
15918325 TTTTTATTTATTC
1 TTTTTATTTATTC
15918338 TTTTTATTTATT
1 TTTTTATTTATT
15918350 TAGTCATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTATTTATTC
Found at i:15942864 original size:40 final size:40
Alignment explanation
Indices: 15942809--15942955 Score: 249
Period size: 40 Copynumber: 3.7 Consensus size: 40
15942799 TTCGGATGAT
15942809 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
15942849 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
15942889 ACCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
15942929 AACCGGGCTATGTCCCGAAGGCATTTG
1 AACCGGGCTAAGTCCCGAAGGCATTTG
15942956 AGCAAGTAGC
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:15951419 original size:11 final size:11
Alignment explanation
Indices: 15951413--15951438 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15951403 TGAAATTTTC
15951413 TCAAAATTCTA
1 TCAAAATTCTA
15951424 TCAAAATTCTA
1 TCAAAATTCTA
15951435 TCAA
1 TCAA
15951439 TTTTATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:15951706 original size:49 final size:48
Alignment explanation
Indices: 15951578--15951713 Score: 152
Period size: 48 Copynumber: 2.8 Consensus size: 48
15951568 AGTAATAATT
* * * *
15951578 TTAAATTTTG-AATACTA-TTCGATATTTTCTTAATTTTTGCAATTTTAA
1 TTAAA-TTTGCAATACTACTT-GATATTTTTTTCATTTATGCAATTATAA
*
15951626 TTAAATTTGCAATACTATTTGATATTTTTTTCATTTATGCAATTATAA
1 TTAAATTTGCAATACTACTTGATATTTTTTTCATTTATGCAATTATAA
* *
15951674 TTAAAATTT-CAATACTGCTTGATTTTTTTTTTCATTTATG
1 TT-AAATTTGCAATACTACTTGA-TATTTTTTTCATTTATG
15951714 ATGTTTGCAT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
47 4 0.05
48 49 0.64
49 24 0.31
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.54
Consensus pattern (48 bp):
TTAAATTTGCAATACTACTTGATATTTTTTTCATTTATGCAATTATAA
Found at i:15952713 original size:7 final size:7
Alignment explanation
Indices: 15952703--15952790 Score: 176
Period size: 7 Copynumber: 12.6 Consensus size: 7
15952693 TTAGTATTTA
15952703 GTATTAT
1 GTATTAT
15952710 GTATTAT
1 GTATTAT
15952717 GTATTAT
1 GTATTAT
15952724 GTATTAT
1 GTATTAT
15952731 GTATTAT
1 GTATTAT
15952738 GTATTAT
1 GTATTAT
15952745 GTATTAT
1 GTATTAT
15952752 GTATTAT
1 GTATTAT
15952759 GTATTAT
1 GTATTAT
15952766 GTATTAT
1 GTATTAT
15952773 GTATTAT
1 GTATTAT
15952780 GTATTAT
1 GTATTAT
15952787 GTAT
1 GTAT
15952791 ATAAATAATA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 81 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (7 bp):
GTATTAT
Found at i:15953201 original size:7 final size:7
Alignment explanation
Indices: 15953190--15953221 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
15953180 ACGCAAGCCA
*
15953190 TATTTAA
1 TATTTAG
15953197 TATTTAG
1 TATTTAG
15953204 TATTTAG
1 TATTTAG
15953211 TATTTAG
1 TATTTAG
15953218 TATT
1 TATT
15953222 ATGTATTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:15953227 original size:7 final size:7
Alignment explanation
Indices: 15953217--15953241 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15953207 TTAGTATTTA
15953217 GTATTAT
1 GTATTAT
15953224 GTATTAT
1 GTATTAT
15953231 GTATTAT
1 GTATTAT
15953238 GTAT
1 GTAT
15953242 ATAAATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTAT
Found at i:15953227 original size:14 final size:14
Alignment explanation
Indices: 15953197--15953241 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
15953187 CCATATTTAA
15953197 TATTTAGTATT-TAG
1 TATTTAGTATTAT-G
15953211 TATTTAGTATTATG
1 TATTTAGTATTATG
15953225 TA-TTATGTATTATG
1 TATTTA-GTATTATG
15953239 TAT
1 TAT
15953242 ATAAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.11
14 24 0.86
15 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (14 bp):
TATTTAGTATTATG
Found at i:15953608 original size:451 final size:451
Alignment explanation
Indices: 15952766--15953646 Score: 1501
Period size: 451 Copynumber: 2.0 Consensus size: 451
15952756 TATGTATTAT
*
15952766 GTATTATGTATTATGTATTATGTATATAAATAATATTTTTATCATGTTCATATAGTTTCAATAGA
1 GTATTATGTATTATGTATTATGTATATAAATAATATTTTTATCATGTTCATATAGTGTCAATAGA
*
15952831 CACCATACGAGGATCCAACAATTCGGGCAGTGATTCCGGATGAATTCTTCCAAAATCCAAACGCT
66 CACCATACGAGGATCCAACAATTCGGGCAGTAATTCCGGATGAATTCTTCCAAAATCCAAACGCT
* * *
15952896 TGGCATGTGAAGGTTGCATTGGTGAACTATGCTACCGTGGAGATGCACTAGTCAGATAGAGTATT
131 TGGCATGTGAAGGTCGCATTGGTGAACTATGCTACCGTAGAGATGCACCAGTCAGATAGAGTATT
15952961 GAGGCAATTTGGATTCAGACAACCAATTCCCGTGGCACCTGAGGTGTTTGATGATGAGCACAAAG
196 GAGGCAATTTGGATTCAGACAACCAATTCCCGTGGCACCTGAGGTGTTTGATGATGAGCACAAAG
* * *
15953026 TCGACTTACGGCAACTGCATACGGATTGGCCGAGATTCTGGTCACACTATATCAAAATGTGGGAA
261 TCGACTTACGGCAACTACATACGGATTGGCCGAGATTCTGGTCACACTATATCAAAATATGGAAA
* **
15953091 AATCGGTATGATTATATCCCAACTCGAGAACCGATCATTGTTCCAGAGTTAACGTGCGTACCGGA
326 AATCGGTATGATTATATACCAACTCGAGAACCGATCATCATTCCAGAGTTAACGTGCGTACCGGA
*
15953156 ATACATGTCATGGTTTAGGATCCAACGCAAGCCATATTTAATATTTAGTATTTAGTATTTA
391 ATACATGCCATGGTTTAGGATCCAACGCAAGCCATATTTAATATTTAGTATTTAGTATTTA
*
15953217 GTATTATGTATTATGTATTATGTATATAAATAATATTTTTATCATGTTTATATAGTGTCAATAGA
1 GTATTATGTATTATGTATTATGTATATAAATAATATTTTTATCATGTTCATATAGTGTCAATAGA
*** * * *
15953282 CACCATACGAGGATCTGGCAATTCGGGCAGTAATTCCGGATGAATTCTTTCAAAATCCAAATGTT
66 CACCATACGAGGATCCAACAATTCGGGCAGTAATTCCGGATGAATTCTTCCAAAATCCAAACGCT
*
15953347 TGGCATGTGAAGGTCGTATTGGTGAACTATGCTACCGTAGAGATGCACCAGTCAGATAGAGTATT
131 TGGCATGTGAAGGTCGCATTGGTGAACTATGCTACCGTAGAGATGCACCAGTCAGATAGAGTATT
*
15953412 GAGGCAATTTGGATTCAGACAACCGATTCCCGTGGCACCTGAGGTGTTTGATGATGAGCACAAAG
196 GAGGCAATTTGGATTCAGACAACCAATTCCCGTGGCACCTGAGGTGTTTGATGATGAGCACAAAG
* *
15953477 TCGACTTACGGTAACTACATACGGATTGGCCGAGATTCTGGTCACACTATATCGAAATATGGAAA
261 TCGACTTACGGCAACTACATACGGATTGGCCGAGATTCTGGTCACACTATATCAAAATATGGAAA
* * * *
15953542 AATCGGTATGATTATATACCAACTCGGGAACTGATCATCATTTCAGAGTTAGCGTGCGTACCGGA
326 AATCGGTATGATTATATACCAACTCGAGAACCGATCATCATTCCAGAGTTAACGTGCGTACCGGA
**
15953607 ATACATGCCATGGTTTAGGATCCATGGCAAGCCATATTTA
391 ATACATGCCATGGTTTAGGATCCAACGCAAGCCATATTTA
15953647 TTATCGGAAG
Statistics
Matches: 401, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
451 401 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (451 bp):
GTATTATGTATTATGTATTATGTATATAAATAATATTTTTATCATGTTCATATAGTGTCAATAGA
CACCATACGAGGATCCAACAATTCGGGCAGTAATTCCGGATGAATTCTTCCAAAATCCAAACGCT
TGGCATGTGAAGGTCGCATTGGTGAACTATGCTACCGTAGAGATGCACCAGTCAGATAGAGTATT
GAGGCAATTTGGATTCAGACAACCAATTCCCGTGGCACCTGAGGTGTTTGATGATGAGCACAAAG
TCGACTTACGGCAACTACATACGGATTGGCCGAGATTCTGGTCACACTATATCAAAATATGGAAA
AATCGGTATGATTATATACCAACTCGAGAACCGATCATCATTCCAGAGTTAACGTGCGTACCGGA
ATACATGCCATGGTTTAGGATCCAACGCAAGCCATATTTAATATTTAGTATTTAGTATTTA
Found at i:15953846 original size:18 final size:18
Alignment explanation
Indices: 15953823--15953865 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
15953813 CGCGAGATGC
*
15953823 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
15953841 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
15953859 GTTTCCT
1 GTATCCT
15953866 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:15957570 original size:126 final size:127
Alignment explanation
Indices: 15957336--15957709 Score: 506
Period size: 126 Copynumber: 3.0 Consensus size: 127
15957326 ATTTGTAGGC
* *
15957336 TCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGGATCTTTTTTCAGAATTTTTTG
1 TCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAA-ATTTTG
* **
15957401 CCGACAGTGCATCCTGCTTGAAGCGTTTTTAACACTATTTGTTCAGAAACGTCTACTCAGG-T
65 CTGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGGAT
* * *
15957463 TCATTTTCCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGAACTTTTGC
1 TCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGC
*
15957528 TGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATCTGTTCAGAAACGTCTACTC-GGAT
66 TGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGGAT
* * * *
15957589 TTATTTTTCTACAAAC-ACTGTAGCAAAAGAGCGTCCACGTGGGAG-TTTTTTCCAAAAATTTT-
1 TCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTT-CAGAAATTTTG
* * * * * * * *
15957651 CTGGCACTGCATTCTACTTAAAGCATTTTCGACATTATTTGTTCAGAAATGTCTACTCA
65 CTGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCA
15957710 AAATTATTCT
Statistics
Matches: 220, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
124 55 0.25
125 38 0.17
126 72 0.33
127 55 0.25
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (127 bp):
TCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGC
TGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGGAT
Found at i:15958398 original size:23 final size:23
Alignment explanation
Indices: 15958359--15958423 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
15958349 ATTTTTTTAT
15958359 AAACCCTAAAACCCTAAAACATAAA
1 AAACCCT--AACCCTAAAACATAAA
**
15958384 AAACCCTAACCCTAAATTATAAA
1 AAACCCTAACCCTAAAACATAAA
*
15958407 AAACCCTAACCTTAAAA
1 AAACCCTAACCCTAAAA
15958424 ATCCTAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 29 0.81
25 7 0.19
ACGTcount: A:0.55, C:0.28, G:0.00, T:0.17
Consensus pattern (23 bp):
AAACCCTAACCCTAAAACATAAA
Found at i:15961921 original size:19 final size:19
Alignment explanation
Indices: 15961891--15961942 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
15961881 ATAAAAAATA
*
15961891 AAAAATT-T-ATTTTATGT
1 AAAAATTATAATTTTATAT
15961908 AAAAACTTA-AATTTTTATAT
1 AAAAA-TTATAA-TTTTATAT
15961928 AAAAATTATAATTTT
1 AAAAATTATAATTTT
15961943 TATTTTCTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 5 0.17
18 2 0.07
19 8 0.28
20 14 0.48
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
AAAAATTATAATTTTATAT
Found at i:15961925 original size:20 final size:20
Alignment explanation
Indices: 15961900--15961945 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
15961890 AAAAAATTTA
*
15961900 TTTTATGTAAAAACTTA-AAT
1 TTTTATATAAAAA-TTATAAT
15961920 TTTTATATAAAAATTATAAT
1 TTTTATATAAAAATTATAAT
15961940 TTTTAT
1 TTTTAT
15961946 TTTCTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
TTTTATATAAAAATTATAAT
Found at i:15962175 original size:25 final size:25
Alignment explanation
Indices: 15962141--15962190 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
15962131 ACATTTTACA
15962141 AAAAATGCTTCTTTAGGTGCAAAAT
1 AAAAATGCTTCTTTAGGTGCAAAAT
15962166 AAAAATGCTTCTTTAGGTGCAAAAT
1 AAAAATGCTTCTTTAGGTGCAAAAT
15962191 GTTATTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (25 bp):
AAAAATGCTTCTTTAGGTGCAAAAT
Found at i:15962635 original size:24 final size:22
Alignment explanation
Indices: 15962608--15962675 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 22
15962598 AAAAACCTTT
15962608 TATTTTTATATATTTAAAAAAACA
1 TATTTTTATAT-TTTAAAAAAA-A
*
15962632 TATTTTCATACTTTTCAATAAAAAA
1 TATTTTTATA-TTTT-AA-AAAAAA
*
15962657 TATTTTATATTTTTTAAAA
1 TATTTT-TATATTTTAAAA
15962676 TTTTAATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
23 2 0.05
24 14 0.38
25 14 0.38
26 7 0.19
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTTTTATATTTTAAAAAAAA
Found at i:15973275 original size:17 final size:17
Alignment explanation
Indices: 15973255--15973288 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15973245 AGGTTTAGGT
15973255 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
15973272 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
15973289 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:15974158 original size:13 final size:14
Alignment explanation
Indices: 15974139--15974180 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
15974129 ATTTCAATTT
15974139 TATTTTAATAATAA
1 TATTTTAATAATAA
*
15974153 -ATTTTAAAAATAA
1 TATTTTAATAATAA
15974166 TAGTTTTAAATAATA
1 TA-TTTT-AATAATA
15974181 TGATTCACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 12 0.52
14 1 0.04
15 4 0.17
16 6 0.26
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (14 bp):
TATTTTAATAATAA
Found at i:15974233 original size:15 final size:15
Alignment explanation
Indices: 15974213--15974269 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
15974203 ATTCAATATT
15974213 AATATTTTAATAATA
1 AATATTTTAATAATA
*
15974228 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
15974247 AATATATTAATAATA
1 AATATTTTAATAATA
*
15974262 AATGTTTT
1 AATATTTT
15974270 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:15974747 original size:14 final size:14
Alignment explanation
Indices: 15974728--15974765 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
15974718 CCAGAAAAGT
15974728 AATCATTTTCC-ATA
1 AATCATTTTCCGA-A
15974742 AATCATTTTCCGAA
1 AATCATTTTCCGAA
*
15974756 AGTCATTTTC
1 AATCATTTTC
15974766 AGTGAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 21 0.95
15 1 0.05
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (14 bp):
AATCATTTTCCGAA
Found at i:15976993 original size:15 final size:14
Alignment explanation
Indices: 15976969--15976998 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
15976959 TGTCTACCCT
15976969 CATCAAGTAATTAC
1 CATCAAGTAATTAC
15976983 CATCTAAGTAATTAC
1 CATC-AAGTAATTAC
15976998 C
1 C
15976999 TTTGATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (14 bp):
CATCAAGTAATTAC
Found at i:15994856 original size:34 final size:34
Alignment explanation
Indices: 15994810--15994874 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
15994800 CACATCTGGC
15994810 ACTGAAACTGAAATGGACTAAGGCCCAAACTACT
1 ACTGAAACTGAAATGGACTAAGGCCCAAACTACT
* * *
15994844 ACTGAAATTGAAATGGGCTTAGGCCCAAACT
1 ACTGAAACTGAAATGGACTAAGGCCCAAACT
15994875 GCATTTGACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (34 bp):
ACTGAAACTGAAATGGACTAAGGCCCAAACTACT
Found at i:16004720 original size:13 final size:13
Alignment explanation
Indices: 16004702--16004740 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
16004692 AAGTAATCGA
*
16004702 ACACGAGCATGTC
1 ACACGAGCGTGTC
*
16004715 ACACGAGCGTATC
1 ACACGAGCGTGTC
16004728 ACACGAGCGTGTC
1 ACACGAGCGTGTC
16004741 CCTACCGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.15
Consensus pattern (13 bp):
ACACGAGCGTGTC
Found at i:16014011 original size:26 final size:25
Alignment explanation
Indices: 16013975--16014025 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
16013965 GTAGAACCCA
16013975 AAGGAACTAAAAGTACTAGTAATGAC
1 AAGGAACTAAAAGTACTAG-AATGAC
*
16014001 AAGGAACTAAAAGTATTAGAATGAC
1 AAGGAACTAAAAGTACTAGAATGAC
16014026 TGTCCTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.51, C:0.10, G:0.20, T:0.20
Consensus pattern (25 bp):
AAGGAACTAAAAGTACTAGAATGAC
Found at i:16016703 original size:17 final size:17
Alignment explanation
Indices: 16016681--16016719 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
16016671 TTTTAAAAGG
*
16016681 AAAACAAATGAATCTTC
1 AAAACAAATGAATCTTA
16016698 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
16016715 AAAAC
1 AAAAC
16016720 TTAATCACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.59, C:0.15, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:16020590 original size:42 final size:42
Alignment explanation
Indices: 16020522--16020609 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
16020512 CCTTAGGCCT
* ** *
16020522 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
16020564 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
16020606 ATTT
1 ATTT
16020610 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
Found at i:16020825 original size:26 final size:26
Alignment explanation
Indices: 16020754--16020928 Score: 255
Period size: 26 Copynumber: 6.8 Consensus size: 26
16020744 CCTCTTTAAT
**
16020754 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
16020779 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
16020804 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
16020830 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* * *
16020856 AACTAGGGCATAAGCCTTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
16020882 AACTGGGGCATAAGCCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
16020908 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
16020929 GCACTTCCTC
Statistics
Matches: 134, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 32 0.24
26 102 0.76
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:16020865 original size:52 final size:52
Alignment explanation
Indices: 16020754--16020928 Score: 291
Period size: 52 Copynumber: 3.4 Consensus size: 52
16020744 CCTCTTTAAT
*
16020754 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
16020804 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* * *
16020856 AACTAGGGCATAAGCCTTTTTCGATAAACTGGGGCATAAGCCATTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
16020908 AACTGGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
16020929 GCACTTCCTC
Statistics
Matches: 117, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
50 9 0.08
51 25 0.21
52 83 0.71
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (52 bp):
AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:16021143 original size:14 final size:14
Alignment explanation
Indices: 16021124--16021154 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
16021114 TTTCACATTA
16021124 TAAGGGTATTTTCG
1 TAAGGGTATTTTCG
16021138 TAAGGGTATTTTCG
1 TAAGGGTATTTTCG
16021152 TAA
1 TAA
16021155 TTTTACTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.42
Consensus pattern (14 bp):
TAAGGGTATTTTCG
Found at i:16021844 original size:27 final size:27
Alignment explanation
Indices: 16021744--16021827 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
16021734 GGGCATATTC
* * *
16021744 GTCATTTTACCATACAGTGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
16021771 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
16021798 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
16021825 GTC
1 GTC
16021828 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:16022184 original size:27 final size:27
Alignment explanation
Indices: 16021866--16022198 Score: 181
Period size: 27 Copynumber: 12.3 Consensus size: 27
16021856 TTTCATCCTA
* * * * *
16021866 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ** * *
16021893 CAAGTGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
16021920 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-T
* * *
16021949 CAACGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
* *
16021976 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * * *
16022003 TGAGAGTATTTCGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
16022030 C-AGTGGTATTTTCGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* *
16022056 CTAAGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* * * * *
16022084 CAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * **
16022110 CTAGGGTACTTTGGTAATTTCATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
16022137 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
16022164 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
16022191 CGAGGGTA
1 CAAGGGTA
16022199 AAACAGTAAT
Statistics
Matches: 237, Mismatches: 60, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
26 22 0.09
27 184 0.78
28 16 0.07
29 15 0.06
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:16022193 original size:54 final size:53
Alignment explanation
Indices: 16021868--16022198 Score: 209
Period size: 54 Copynumber: 6.1 Consensus size: 53
16021858 TCATCCTACA
* * * * ** * *
16021868 AGGGTGTTTTGGTAAATCTACAAACCAAGTGTATTTCAGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATC
* * * * * * *
16021921 AATGGTATTTCT-ATAATTTTTAGAAAGTCAACGGTATTTCT-GTAACTTTGTAAATC
1 -AGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTATAAATC
*** * * * *
16021977 AGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTCGGTAATTTCACAAATC
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATC
* * * *
16022031 AGTGGTATTTTCGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATC
* * * * * * **
16022085 AGGGGTATTTTAGCAATTTTACAGA-CTAGGGTACTTTGGTAATTTCATTGATC
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATC
** * *
16022138 GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATC
1 -AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATC
16022192 GAGGGTA
1 -AGGGTA
16022199 AAACAGTAAT
Statistics
Matches: 212, Mismatches: 54, Indels: 22
0.74 0.19 0.08
Matches are distributed among these distances:
53 39 0.18
54 123 0.58
55 18 0.08
56 32 0.15
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATC
Found at i:16022198 original size:107 final size:107
Alignment explanation
Indices: 16021953--16022196 Score: 269
Period size: 107 Copynumber: 2.3 Consensus size: 107
16021943 GAAAGTCAAC
* * * *
16021953 GGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTCGGT
1 GGTATTT-TGTAATTTTGTAAATCAGGGGTATTTTAGCAATTTTACAAACTGAGAGTATTTCGGT
*
16022018 AATTTCACAAATCAGTGGTATTTTCGTAATTTTACAAACTAAG
65 AATTTCACAAATCAGTGGTATTTTCGTAATTTTACAAACCAAG
** * * *
16022061 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAGACT-AGGGTACTTT-GG
1 GGTATTTT-GTAATTTTGTAAATCAGGGGTATTTTAGCAATTTTACAAACTGAGAGTA-TTTCGG
*** * **
16022124 TAATTTCATTGATCGAG-GGTATTTTGGTAATTTTGTAAACCAAG
64 TAATTTCACAAATC-AGTGGTATTTTCGTAATTTTACAAACCAAG
16022168 GGTATTTTAGTAATTTTGTAAATCGAGGG
1 GGTATTTT-GTAATTTTGTAAATC-AGGG
16022197 TAAAACAGTA
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
107 62 0.55
108 50 0.45
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (107 bp):
GGTATTTTGTAATTTTGTAAATCAGGGGTATTTTAGCAATTTTACAAACTGAGAGTATTTCGGTA
ATTTCACAAATCAGTGGTATTTTCGTAATTTTACAAACCAAG
Found at i:16022213 original size:33 final size:32
Alignment explanation
Indices: 16022175--16022268 Score: 117
Period size: 33 Copynumber: 3.0 Consensus size: 32
16022165 AAGGGTATTT
*
16022175 TAGTAATTTTGTAAATCGAGGGTAAAACAGTAA
1 TAGTAATTCTGTAAATCGAGGGTAAAAC-GTAA
*
16022208 TAGTAATTCTATAAATCGAGGGTAAAACG---
1 TAGTAATTCTGTAAATCGAGGGTAAAACGTAA
16022237 --GTAATTCTGTAAATCGAGGGTAAAACGGTAA
1 TAGTAATTCTGTAAATCGAGGGTAAAAC-GTAA
16022268 T
1 T
16022269 TCTATAAGTT
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
27 25 0.47
28 1 0.02
32 1 0.02
33 26 0.49
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (32 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGTAA
Found at i:16022240 original size:27 final size:27
Alignment explanation
Indices: 16022210--16022312 Score: 170
Period size: 27 Copynumber: 3.8 Consensus size: 27
16022200 AACAGTAATA
16022210 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
16022237 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
16022264 GTAATTCTATAAGTTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
16022291 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
16022313 CTTTGGTAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:16022274 original size:54 final size:56
Alignment explanation
Indices: 16022177--16022312 Score: 177
Period size: 54 Copynumber: 2.4 Consensus size: 56
16022167 GGGTATTTTA
*
16022177 GTAATTTTGTAAATCGAGGGTAAAACAGTAATAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACAG----AGTAATTCTATAAATCGAGGGTAAAACG
* * *
16022237 GTAATTCTGTAAATCGAGGGTAAAAC-G-GTAATTCTATAAGTTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACAGAGTAATTCTATAAATCGAGGGTAAAACG
*
16022291 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
16022313 CTTTGGTAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
54 45 0.63
59 1 0.01
60 25 0.35
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (56 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGAGTAATTCTATAAATCGAGGGTAAAACG
Found at i:16027779 original size:89 final size:89
Alignment explanation
Indices: 16027628--16027806 Score: 331
Period size: 89 Copynumber: 2.0 Consensus size: 89
16027618 TAAATCTAAT
*
16027628 TCCATGTTAACTAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
1 TCCATGTTAACCAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
* *
16027693 TCCCTAGATTTTATACCTTTACAA
66 TCCCTAAAATTTATACCTTTACAA
16027717 TCCATGTTAACCAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
1 TCCATGTTAACCAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
16027782 TCCCTAAAATTTATACCTTTACAA
66 TCCCTAAAATTTATACCTTTACAA
16027806 T
1 T
16027807 TTAGTCCCTA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (89 bp):
TCCATGTTAACCAAACATGCAAGGGACCTTGAAACTACTCTCATTTATCATCATTTCACAATAGA
TCCCTAAAATTTATACCTTTACAA
Found at i:16031892 original size:21 final size:20
Alignment explanation
Indices: 16031868--16031908 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
16031858 AGAGTTGGGA
* *
16031868 GTTCTATTGATATAACTCTGG
1 GTTCTATGGATACAAC-CTGG
16031889 GTTCTATGGATACAACCTGG
1 GTTCTATGGATACAACCTGG
16031909 TCTTCTATCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (20 bp):
GTTCTATGGATACAACCTGG
Found at i:16036363 original size:78 final size:78
Alignment explanation
Indices: 16036234--16036389 Score: 276
Period size: 78 Copynumber: 2.0 Consensus size: 78
16036224 TAATGACTAT
*
16036234 GCAAGAAGATTAAATCAATTTGAAAGAAATCAAGAATGAAATTTAGTTGATAGGCTTAGTAACCA
1 GCAAGAAGATTAAATCAATTTGAAAGAAATCAAGAATGAAATTTAGTTGATAGGCCTAGTAACCA
16036299 TCCAACTATAGGA
66 TCCAACTATAGGA
* * *
16036312 GCAAGAGGATTAAATCAATTTGAAAGAAATCAAGTATGAAATTTAGTTGATAGGCCTAGTGACCA
1 GCAAGAAGATTAAATCAATTTGAAAGAAATCAAGAATGAAATTTAGTTGATAGGCCTAGTAACCA
16036377 TCCAACTATAGGA
66 TCCAACTATAGGA
16036390 ACTAAATGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (78 bp):
GCAAGAAGATTAAATCAATTTGAAAGAAATCAAGAATGAAATTTAGTTGATAGGCCTAGTAACCA
TCCAACTATAGGA
Found at i:16037673 original size:20 final size:21
Alignment explanation
Indices: 16037650--16037690 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16037640 ATCACTTTAA
*
16037650 TATTAA-ATTAATATAATATT
1 TATTAAGATAAATATAATATT
*
16037670 TATTAAGATAAATATATTATT
1 TATTAAGATAAATATAATATT
16037691 AAAATTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTAAGATAAATATAATATT
Found at i:16038503 original size:16 final size:17
Alignment explanation
Indices: 16038467--16038518 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
16038457 TTAATTTTTT
*
16038467 TAAAATTATAAAAATAA
1 TAAACTTATAAAAATAA
*
16038484 -AAAC-TATTAAAATAA
1 TAAACTTATAAAAATAA
16038499 TAAACTTATAAAAAT-A
1 TAAACTTATAAAAATAA
16038515 TAAA
1 TAAA
16038519 TTTAATTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 10 0.33
16 12 0.40
17 8 0.27
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAACTTATAAAAATAA
Found at i:16047769 original size:96 final size:94
Alignment explanation
Indices: 16047638--16048146 Score: 790
Period size: 96 Copynumber: 5.4 Consensus size: 94
16047628 TTAGGATTCT
* * *
16047638 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
16047702 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
*
16047732 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGTTGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
16047797 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCG
*
16047830 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
16047895 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
*
16047926 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
16047991 TGTGTATATGTGATAAGGCCTAATAGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
* *
16048020 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
16048085 TGTATATATGTGAT-AGGCCGAGTGGCCA
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * *
16048113 ACG-GATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
16048147 TCCTGAAGGG
Statistics
Matches: 389, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
92 29 0.07
93 13 0.03
94 117 0.30
96 183 0.47
98 47 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:16047777 original size:49 final size:47
Alignment explanation
Indices: 16047638--16048146 Score: 790
Period size: 47 Copynumber: 10.7 Consensus size: 47
16047628 TTAGGATTCT
* * *
16047638 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
16047685 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16047732 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
16047781 ATGTGTTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
16047830 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16047877 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
16047926 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
16047973 ATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
16048020 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
16048067 ATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
16048113 ACG-GATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
16048147 TCCTGAAGGG
Statistics
Matches: 437, Mismatches: 19, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
45 26 0.06
46 18 0.04
47 253 0.58
49 140 0.32
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:16048403 original size:37 final size:37
Alignment explanation
Indices: 16048265--16048402 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
16048255 CCGAGCTCTA
16048265 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
16048302 AAGACCGGATGACTATGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
16048339 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
16048376 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
16048403 TCGTCTGAGC
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:16049740 original size:40 final size:40
Alignment explanation
Indices: 16049696--16049999 Score: 391
Period size: 40 Copynumber: 7.6 Consensus size: 40
16049686 GGCTAAATCT
16049696 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
16049736 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* * * * *
16049776 CGAAGAGCATTCGCGCTAGTGATGTATCTGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
16049816 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* *
16049856 CGAAGAGCATTCGTGCTAGTGATATATCCAGG-CTAAGTCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCC-GGACTAAGTTC
*
16049896 CGAAGAGCATTCGTGCTAGTGATATATCC-GAGCTAAG-TC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGA-CTAAGTTC
** * * * * *
16049935 CGAAGAGCATTTATGCTGGTGTTATATCC-GAGCTAGGTCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGA-CTAAGTTC
* * *
16049975 CGAAGAGCAATCATGCTGGTGATGT
1 CGAAGAGCATTCGTGCTAGTGATGT
16050000 GTATTCGGGC
Statistics
Matches: 237, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.00
39 33 0.14
40 201 0.85
41 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
Found at i:16049892 original size:120 final size:120
Alignment explanation
Indices: 16049673--16049945 Score: 433
Period size: 120 Copynumber: 2.3 Consensus size: 120
16049663 GAGAATTGAG
* * *
16049673 AGTGAAATGTCCGGGCTAAATCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* *
16049738 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGCGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGCGCT
* *
16049793 AGTGATGTATCTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
*
16049858 AAGAGCATTCGTGCTAGTGATATATCCAGG-CTAAGTCCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCC-GGACTAAGTCCCGAAGAGCATTCGCGCT
* *
16049913 AGTGATATATCCGAGCTAAGT-CCGAAGAGCATT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATT
16049946 TATGCTGGTG
Statistics
Matches: 140, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
119 12 0.09
120 126 0.90
121 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGCGCT
Found at i:16053538 original size:96 final size:94
Alignment explanation
Indices: 16053407--16053917 Score: 799
Period size: 96 Copynumber: 5.4 Consensus size: 94
16053397 TTAGGATTCT
* * *
16053407 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
16053471 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
*
16053501 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGTTGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
16053566 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCG
*
16053599 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
16053664 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
*
16053695 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
16053760 TGTGTATATGTGATAAGGCCTAATAGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
* *
16053789 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
16053854 TGTATATATGTGATAGGGCCGAGTGGCCA
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * *
16053883 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
16053918 TCCTGAAGGG
Statistics
Matches: 390, Mismatches: 22, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
93 1 0.00
94 159 0.41
96 183 0.47
98 47 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:16053546 original size:49 final size:47
Alignment explanation
Indices: 16053407--16053917 Score: 799
Period size: 47 Copynumber: 10.7 Consensus size: 47
16053397 TTAGGATTCT
* * *
16053407 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
16053454 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16053501 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
16053550 ATGTGTTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
16053599 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16053646 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
16053695 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
16053742 ATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
16053789 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
16053836 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
16053883 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
16053918 TCCTGAAGGG
Statistics
Matches: 438, Mismatches: 21, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 297 0.68
49 140 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:16054174 original size:37 final size:37
Alignment explanation
Indices: 16054036--16054173 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
16054026 CCGAGCTCTA
16054036 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
16054073 AAGACCGGATGACTATGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
16054110 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
16054147 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
16054174 TCGTCTGAGC
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:16055511 original size:40 final size:40
Alignment explanation
Indices: 16055467--16055770 Score: 391
Period size: 40 Copynumber: 7.6 Consensus size: 40
16055457 GGCTAAATCT
16055467 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
16055507 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* * * * *
16055547 CGAAGAGCATTCGCGCTAGTGATGTATCTGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
16055587 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
* *
16055627 CGAAGAGCATTCGTGCTAGTGATATATCCAGG-CTAAGTCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCC-GGACTAAGTTC
*
16055667 CGAAGAGCATTCGTGCTAGTGATATATCC-GAGCTAAG-TC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGA-CTAAGTTC
** * * * * *
16055706 CGAAGAGCATTTATGCTGGTGTTATATCC-GAGCTAGGTCC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGA-CTAAGTTC
* * *
16055746 CGAAGAGCAATCATGCTGGTGATGT
1 CGAAGAGCATTCGTGCTAGTGATGT
16055771 GTATTCGGGC
Statistics
Matches: 237, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.00
39 33 0.14
40 201 0.85
41 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
Found at i:16055663 original size:120 final size:120
Alignment explanation
Indices: 16055444--16055716 Score: 433
Period size: 120 Copynumber: 2.3 Consensus size: 120
16055434 GAGAATTGAG
* * *
16055444 AGTGAAATGTCTGGGCTAAATCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* *
16055509 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGCGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGCGCT
*
16055564 AGTGATGTATCTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
*
16055629 AAGAGCATTCGTGCTAGTGATATATCCAGG-CTAAGTCCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCC-GGACTAAGTCCCGAAGAGCATTCGCGCT
* * *
16055684 AGTGATATATCCGAGCTAAGT-CCGAAGAGCATT
1 AGTGATATATCTGGGCTAAATCCCGAAGAGCATT
16055717 TATGCTGGTG
Statistics
Matches: 141, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
119 12 0.09
120 127 0.90
121 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (120 bp):
AGTGATATATCTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGCGCT
Found at i:16059312 original size:96 final size:94
Alignment explanation
Indices: 16059181--16059691 Score: 826
Period size: 96 Copynumber: 5.4 Consensus size: 94
16059171 TTAGGATTCT
* * *
16059181 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
16059245 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
16059275 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
16059340 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCG
16059373 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
16059438 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
16059469 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
16059534 TGTGTATATGTGATAAGGCCTAATAGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
* *
16059563 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
16059628 TGTATATATGTGATAGGGCCGAGTGGCCA
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * *
16059657 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
16059692 TCTCGAAGGC
Statistics
Matches: 396, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
93 1 0.00
94 160 0.40
96 188 0.47
98 47 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:16059320 original size:49 final size:47
Alignment explanation
Indices: 16059181--16059691 Score: 826
Period size: 47 Copynumber: 10.7 Consensus size: 47
16059171 TTAGGATTCT
* * *
16059181 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
16059228 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16059275 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
16059324 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
16059373 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16059420 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
16059469 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
16059516 ATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
16059563 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
16059610 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
16059657 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
16059692 TCTCGAAGGC
Statistics
Matches: 444, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 300 0.68
49 143 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:16059947 original size:37 final size:37
Alignment explanation
Indices: 16059809--16059946 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
16059799 CCGAGCTCTA
16059809 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
**
16059846 AAGACTGGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
16059883 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
16059920 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
16059947 TCGTCTGAGC
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:16069988 original size:36 final size:34
Alignment explanation
Indices: 16069935--16070005 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 34
16069925 AAGATGTTTA
16069935 AAAACATTTATTCATTTTATGCTTTTAATTT-TTATT
1 AAAACATTTATTCATTTTAT--TTTT-ATTTATTATT
*
16069971 AAAACTATTT-TTTATTTTATTTTTATTTATTATT
1 AAAAC-ATTTATTCATTTTATTTTTATTTATTATT
16070005 A
1 A
16070006 TTATTATTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
33 4 0.12
34 10 0.31
36 14 0.44
37 4 0.12
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (34 bp):
AAAACATTTATTCATTTTATTTTTATTTATTATT
Found at i:16073043 original size:10 final size:10
Alignment explanation
Indices: 16073028--16073057 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
16073018 TCTCTTTCAT
16073028 TGCTCTCCTA
1 TGCTCTCCTA
16073038 TGCTCTCCTA
1 TGCTCTCCTA
*
16073048 TACTCTCCTA
1 TGCTCTCCTA
16073058 ACTATAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.40, G:0.07, T:0.40
Consensus pattern (10 bp):
TGCTCTCCTA
Found at i:16089710 original size:40 final size:38
Alignment explanation
Indices: 16089613--16089697 Score: 170
Period size: 38 Copynumber: 2.2 Consensus size: 38
16089603 TGGCTGATTA
16089613 AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
1 AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
16089651 AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
1 AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
16089689 AATGGCACT
1 AATGGCACT
16089698 AAGTATGCGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (38 bp):
AATGGCACTGTGTGCGATATATAAATTTAGTTTAATAT
Found at i:16100668 original size:6 final size:6
Alignment explanation
Indices: 16100659--16100698 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
16100649 ATTTTAATTG
* *
16100659 ATTTTT ATTTTT ATTTTC ATTTTT TTATTTT ATTTTT ATT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT ATTTTT ATT
16100699 AAGTTCACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:16100693 original size:13 final size:14
Alignment explanation
Indices: 16100666--16100695 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
16100656 TTGATTTTTA
16100666 TTTTTATTTTCATT
1 TTTTTATTTTCATT
16100680 TTTTTATTTT-ATT
1 TTTTTATTTTCATT
16100693 TTT
1 TTT
16100696 ATTAAGTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTATTTTCATT
Found at i:16110304 original size:4 final size:4
Alignment explanation
Indices: 16110295--16110322 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
16110285 GAAAAATTTG
16110295 TATT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT
16110323 GGCTATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:16110372 original size:33 final size:33
Alignment explanation
Indices: 16110330--16110395 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
16110320 ATTGGCTATA
16110330 AAACTGAATGAAAACAATGTAAAAGGGGATCTT
1 AAACTGAATGAAAACAATGTAAAAGGGGATCTT
16110363 AAACTGAATGAAAACAATGTAAAAGGGGATCTT
1 AAACTGAATGAAAACAATGTAAAAGGGGATCTT
16110396 TCTTTTTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.21, T:0.21
Consensus pattern (33 bp):
AAACTGAATGAAAACAATGTAAAAGGGGATCTT
Found at i:16111248 original size:13 final size:13
Alignment explanation
Indices: 16111230--16111254 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16111220 TTATACATTT
16111230 TAAATTACTTTGA
1 TAAATTACTTTGA
16111243 TAAATTACTTTG
1 TAAATTACTTTG
16111255 TTTTTATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (13 bp):
TAAATTACTTTGA
Found at i:16114635 original size:17 final size:17
Alignment explanation
Indices: 16114613--16114647 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
16114603 TGCGCAAGAG
16114613 TTAGATTCATGAAGCGT
1 TTAGATTCATGAAGCGT
16114630 TTAGATTCATGAAGCGT
1 TTAGATTCATGAAGCGT
16114647 T
1 T
16114648 GCAGATAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (17 bp):
TTAGATTCATGAAGCGT
Found at i:16115377 original size:2 final size:2
Alignment explanation
Indices: 16115370--16115413 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
16115360 GCCTCAGAAA
16115370 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
16115412 CT
1 CT
16115414 GTATGATCCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Done.