Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 70 of 316
Found at i:20727374 original size:34 final size:34
Alignment explanation
Indices: 20727304--20727374 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
20727294 TCTACACCTA
** * *
20727304 AAACCCTAATTTACTTAATTTATTTAACAACTCT
1 AAACCCTAATTTAAATAATTTATTAAACAACACT
*
20727338 AAACCCTAATTTAAATAATTT-TTAAAATAACACT
1 AAACCCTAATTTAAATAATTTATT-AAACAACACT
20727372 AAA
1 AAA
20727375 TCTTTTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 2 0.06
34 29 0.94
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (34 bp):
AAACCCTAATTTAAATAATTTATTAAACAACACT
Found at i:20732557 original size:55 final size:55
Alignment explanation
Indices: 20732471--20732574 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 55
20732461 GTCGATACAA
20732471 AAAAAATTAATTCTAAAATAAATTTAAATTTAAATTTT-TATTATTTATTTGTACC
1 AAAAAATTAATTCTAAAATAAATTTAAATTTAAATTTTAT-TTATTTATTTGTACC
* *
20732526 AAAAAA-TAATTTTAAAATATATTTTAAATTTAAATTTTATTTATTTATT
1 AAAAAATTAATTCTAAAATA-AATTTAAATTTAAATTTTATTTATTTATT
20732575 GAGAATTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
54 12 0.27
55 32 0.71
56 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (55 bp):
AAAAAATTAATTCTAAAATAAATTTAAATTTAAATTTTATTTATTTATTTGTACC
Found at i:20735830 original size:10 final size:10
Alignment explanation
Indices: 20735817--20735842 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
20735807 TCTAAATTTA
20735817 TCATTTCTAT
1 TCATTTCTAT
20735827 TCATTTCTAT
1 TCATTTCTAT
20735837 TCATTT
1 TCATTT
20735843 GATTCAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (10 bp):
TCATTTCTAT
Found at i:20738202 original size:15 final size:15
Alignment explanation
Indices: 20738184--20738231 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
20738174 TTTAGTTTTG
20738184 TTAATTAAGGTTTAA
1 TTAATTAAGGTTTAA
* * *
20738199 TTAAATAAAGTATAA
1 TTAATTAAGGTTTAA
*
20738214 TTAATT-AGTTTTAA
1 TTAATTAAGGTTTAA
20738228 TTAA
1 TTAA
20738232 GGTATAAAAG
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 9 0.35
15 17 0.65
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (15 bp):
TTAATTAAGGTTTAA
Found at i:20738823 original size:44 final size:44
Alignment explanation
Indices: 20738773--20738858 Score: 172
Period size: 44 Copynumber: 2.0 Consensus size: 44
20738763 ATTCATGCAG
20738773 TTAGTAGGATGTTATAATTTGAATTGAATTATTATATAGATCTA
1 TTAGTAGGATGTTATAATTTGAATTGAATTATTATATAGATCTA
20738817 TTAGTAGGATGTTATAATTTGAATTGAATTATTATATAGATC
1 TTAGTAGGATGTTATAATTTGAATTGAATTATTATATAGATC
20738859 GAGAATTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (44 bp):
TTAGTAGGATGTTATAATTTGAATTGAATTATTATATAGATCTA
Found at i:20748683 original size:46 final size:48
Alignment explanation
Indices: 20748583--20748895 Score: 231
Period size: 46 Copynumber: 6.6 Consensus size: 48
20748573 TTTGTGTGCT
* * * *
20748583 AGTGTAAGA-CATGTCTGAGACATGGCAT-AGGCTTTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCA-GCCTTGAGATGAGAGCC
*
20748630 AGTGTAAGA-CATGTCTTGGACAT-GCATCAGCCTTGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATG-AGAGCC
* * * * * *
20748676 AGTGTAAGA-CATGTCTGGGTCAT-GCAT-TGGCTACGAGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-TGAGATGAGAGCC
* * * *
20748720 AGTATAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTTGAGA--TGAGAGCC
* * * * * *
20748770 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATGACGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGA-GATGAGAGCC
*
20748819 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTT--GATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGAT-GA-GAGCC
* *
20748866 AGTGTAAAACCATGTCTGGGACATGACATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
20748896 GACATTCTAC
Statistics
Matches: 215, Mismatches: 35, Indels: 32
0.76 0.12 0.11
Matches are distributed among these distances:
44 10 0.05
45 18 0.08
46 55 0.26
47 55 0.26
48 5 0.02
49 35 0.16
50 36 0.17
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATGAGAGCC
Found at i:20748827 original size:99 final size:95
Alignment explanation
Indices: 20748583--20748890 Score: 291
Period size: 96 Copynumber: 3.3 Consensus size: 95
20748573 TTTGTGTGCT
* * * *
20748583 AGTGTAAGACATGTCTGAGACATGGCATAGGCTTTGAGACGAGAG-CTAGTGTAAGA-CATGTCT
1 AGTGTAAGACATGTCTGGGACATGGCATAGGCCTCGAGACGATAGTC-AGTGTAAGACCATGTCT
* *
20748646 TGGACAT-GCATCAGC-CTTGAGATGT-A-AGCC
65 GGGACATGGCATC-GCAC--GATATGTGAGAGCC
* * * *
20748676 AGTGTAAGACATGTCTGGGTCAT-GCATTGG-CTACGAGATG-T-GTCAGTATAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGGCATAGGCCT-CGAGACGATAGTCAGTGTAAGACCATGTCT
20748737 GGGACATGGCATCGGCACGGATATGTGAGAGCC
65 GGGACATGGCATC-GCAC-GATATGTGAGAGCC
* *
20748770 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATGACGATAGTCAGTGTAAGACCATGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATAGGCCTCGA-GACGATAGTCAGTGTAAGACCATGTC
*
20748835 TGGGACATGGCATCG-AC-TTGATG-GATGAGCC
64 TGGGACATGGCATCGCACGAT-ATGTGA-GAGCC
*
20748866 AGTGTAAAACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
20748891 ACATCGACAT
Statistics
Matches: 181, Mismatches: 19, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
90 9 0.05
91 15 0.08
92 24 0.13
93 23 0.13
94 13 0.07
95 16 0.09
96 40 0.22
97 7 0.04
98 2 0.01
99 32 0.18
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACATGTCTGGGACATGGCATAGGCCTCGAGACGATAGTCAGTGTAAGACCATGTCTG
GGACATGGCATCGCACGATATGTGAGAGCC
Found at i:20755470 original size:43 final size:43
Alignment explanation
Indices: 20755379--20755605 Score: 310
Period size: 43 Copynumber: 5.2 Consensus size: 43
20755369 GGTAACGACT
* *
20755379 TTTAGCGGCGTTTGTGGGGAAAGCGCTCCGCTAAAAGTCATGGCC
1 TTTAGCGGCGTTTGTGGGAAAAGCG--CCGCTAAAAGTCATGACC
* * * * *
20755424 TTTAGCGGTGTTTGCGGGGAAAGCGCCACTAAAAGTCATGGCC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACC
* *
20755467 TTTAGCGTCGTTTGTGGGAAAAACGCCGCTAAAAGTCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACC
* * *
20755510 TTTAGTGGCATTTGTGGGAAAAGCACCGCTAAAAGTCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACC
* *
20755553 TTTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGTCATGACT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACC
20755596 TTTAGCGGCG
1 TTTAGCGGCG
20755606 CTTTTGTTAC
Statistics
Matches: 163, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 140 0.86
45 23 0.14
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACC
Found at i:20755712 original size:31 final size:31
Alignment explanation
Indices: 20755677--20755735 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
20755667 AATCCTTCCT
*
20755677 GCATTAAATCCAACCAAAAACAACAAATATA
1 GCATTAAATCCAACCAAAAACAAAAAATATA
* * *
20755708 GCATTGAATCCAATCAAATACAAAAAAT
1 GCATTAAATCCAACCAAAAACAAAAAAT
20755736 GTAACATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.56, C:0.20, G:0.05, T:0.19
Consensus pattern (31 bp):
GCATTAAATCCAACCAAAAACAAAAAATATA
Found at i:20756464 original size:13 final size:14
Alignment explanation
Indices: 20756438--20756466 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
20756428 ACTAACGACG
20756438 AATTAAACCATTAT
1 AATTAAACCATTAT
20756452 AATTAAA-CATTAT
1 AATTAAACCATTAT
20756465 AA
1 AA
20756467 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:20761532 original size:9 final size:9
Alignment explanation
Indices: 20761518--20761614 Score: 67
Period size: 9 Copynumber: 11.0 Consensus size: 9
20761508 TAAGTATAAT
20761518 TAAGTTATG
1 TAAGTTATG
20761527 TAAGTTATG
1 TAAGTTATG
* * *
20761536 ATATGATATA
1 -TAAGTTATG
*
20761546 T-ATTTATG
1 TAAGTTATG
20761554 T-A-TTATG
1 TAAGTTATG
*
20761561 TATGTTATG
1 TAAGTTATG
*
20761570 TAAATTATG
1 TAAGTTATG
*
20761579 TAAGTTATC
1 TAAGTTATG
20761588 TGAA-TTATG
1 T-AAGTTATG
*
20761597 TAAATTATG
1 TAAGTTATG
*
20761606 TAAGATATG
1 TAAGTTATG
20761615 ATATATATTT
Statistics
Matches: 68, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
7 6 0.09
8 7 0.10
9 47 0.69
10 8 0.12
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:20761990 original size:13 final size:14
Alignment explanation
Indices: 20761959--20761990 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
20761949 TTAAATTAAA
20761959 TTAAAATAAAATAT
1 TTAAAATAAAATAT
20761973 TTAAAATAAAAT-T
1 TTAAAATAAAATAT
20761986 TTAAA
1 TTAAA
20761991 TACAATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:20762093 original size:5 final size:5
Alignment explanation
Indices: 20762055--20762081 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
20762045 TTTTCATGAT
20762055 TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TA
20762082 TTTAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:20762100 original size:13 final size:14
Alignment explanation
Indices: 20762054--20762093 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
20762044 TTTTTCATGA
*
20762054 TTAAAATAAAATAAA
1 TTAAAATAAAAT-AT
*
20762069 ATAAAATAAAATAT
1 TTAAAATAAAATAT
20762083 TTAAAATAAAA
1 TTAAAATAAAA
20762094 CTTTAAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:20762117 original size:110 final size:109
Alignment explanation
Indices: 20761882--20762772 Score: 1313
Period size: 105 Copynumber: 8.4 Consensus size: 109
20761872 CAATATTTAA
* *
20761882 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGAAAAAATATTTTTTTGT
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATA-TTTTTCGT
* *
20761947 GATTAAAT----TAAATTAAAATAAAATATTTAAAATAAAATTTT
65 GATTAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
* * *
20761988 AAATACAATTTACTTTAATTAGGTAATTTAAAAATACAATAAAAGTAGACAAAATATTTTTCATG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
20762053 ATTAAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
66 ATT-AAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
* *
20762098 AAATACAATTTAATTTAATTAGCTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTTGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
* *
20762163 ATTAAAT----TAAATTAAAATAAAATATTTAAAATAAAATTTT
66 ATTAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
* * *
20762203 AAATACAATTTACTTTAATTAGGTAATTTAAAAATACAATAAAAGTAGACAAAATATTTTTCATG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
20762268 ATTAAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
66 ATT-AAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
20762313 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
20762378 A-T---TAAAATAAAATAAAATAAAATATTTAAAATAAATA-TTT
66 ATTAAATAAAATAAAATAAAATAAAATATTTAAAATAAA-ACTTT
20762418 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
20762483 A-T---TAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
66 ATTAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
*
20762523 AAACACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
*
20762588 -----AT----TAAAATAAAAT---AT-TTAAAA-TAAAACTTT
66 ATTAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
* * *
20762618 AAATACAATTTAATTTAATTAGGTTATTTTAAAAATAAAATAAAAGTAGACAAAAAAATTTTCGT
1 AAATACAATTTAATTTAATTAGG-TAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGT
* * *
20762683 GATTAAATTAAAATAAAATAAAATAACATATTCAAAATAAAAATTT
65 GATTAAA-TAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
20762729 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
20762773 TATTTAAAAT
Statistics
Matches: 723, Mismatches: 33, Indels: 54
0.89 0.04 0.07
Matches are distributed among these distances:
95 31 0.04
96 44 0.06
97 2 0.00
100 11 0.02
101 1 0.00
102 1 0.00
104 2 0.00
105 307 0.42
106 73 0.10
109 7 0.01
110 213 0.29
111 31 0.04
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (109 bp):
AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
ATTAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
Found at i:20762205 original size:13 final size:14
Alignment explanation
Indices: 20762174--20762205 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
20762164 TTAAATTAAA
20762174 TTAAAATAAAATAT
1 TTAAAATAAAATAT
20762188 TTAAAATAAAAT-T
1 TTAAAATAAAATAT
20762201 TTAAA
1 TTAAA
20762206 TACAATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:20762254 original size:215 final size:215
Alignment explanation
Indices: 20761882--20762772 Score: 1454
Period size: 215 Copynumber: 4.2 Consensus size: 215
20761872 CAATATTTAA
* *
20761882 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGAAAAAATATTTTTTTGT
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATA-TTTTTCGT
*
20761947 GATTAAATTAAATTAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTACTTTAATTAGGT
65 GATTAAATTAAATTAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGT
*
20762012 AATTTAAAAATACAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAATAAAATAAAATA
130 AATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAATAAAATAAAATA
20762077 AAATATTTAAAATAAAACTTT
195 AAATATTTAAAATAAAACTTT
* *
20762098 AAATACAATTTAATTTAATTAGCTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTTGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
*
20762163 ATTAAATTAAATTAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTACTTTAATTAGGTA
66 ATTAAATTAAATTAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTA
*
20762228 ATTTAAAAATACAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAATAAAATAAAATAA
131 ATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAATAAAATAAAATAA
20762293 AATATTTAAAATAAAACTTT
196 AATATTTAAAATAAAACTTT
20762313 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
* *
20762378 ATTAAAATAAAATAAAATAAAATATTTAAAAT-AAATATTTAAATACAATTTAATTTAATTAGGT
66 ATTAAATTAAATTAAAATAAAATATTTAAAATAAAAT-TTTAAATACAATTTAATTTAATTAGGT
*
20762442 AATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGA-T----TAAAATAAAATAAAATA
130 AATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAATAAAATAAAATA
20762502 AAATATTTAAAATAAAACTTT
195 AAATATTTAAAATAAAACTTT
*
20762523 AAACACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
*
20762588 ----------ATTAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTT
66 ATTAAATTAAATTAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGG-T
* * * * *
20762643 ATTTTAAAAATAAAATAAAAGTAGACAAAAAAATTTTCGTGATTAAATTAAAATAAAATAAAATA
130 AATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAATAAAATAAAATA
* * *
20762708 ACATATTCAAAATAAAAATTT
195 AAATATTTAAAATAAAACTTT
20762729 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
20762773 TATTTAAAAT
Statistics
Matches: 648, Mismatches: 19, Indels: 26
0.94 0.03 0.04
Matches are distributed among these distances:
200 47 0.07
201 43 0.07
202 1 0.00
206 78 0.12
210 102 0.16
214 5 0.01
215 318 0.49
216 54 0.08
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (215 bp):
AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
ATTAAATTAAATTAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTA
ATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAATAAAATAAAATAA
AATATTTAAAATAAAACTTT
Found at i:20762308 original size:5 final size:5
Alignment explanation
Indices: 20762270--20762296 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
20762260 TTTTCATGAT
20762270 TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TA
20762297 TTTAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:20762315 original size:13 final size:14
Alignment explanation
Indices: 20762269--20762308 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
20762259 TTTTTCATGA
*
20762269 TTAAAATAAAATAAA
1 TTAAAATAAAAT-AT
*
20762284 ATAAAATAAAATAT
1 TTAAAATAAAATAT
20762298 TTAAAATAAAA
1 TTAAAATAAAA
20762309 CTTTAAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:20762415 original size:13 final size:13
Alignment explanation
Indices: 20762379--20762420 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
20762369 TTTTTCGTGA
20762379 TTAAAATAAA-A-
1 TTAAAATAAATAT
20762390 -TAAAATAAAATAT
1 TTAAAAT-AAATAT
20762403 TTAAAATAAATAT
1 TTAAAATAAATAT
20762416 TTAAA
1 TTAAA
20762421 TACAATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 6 0.22
11 3 0.11
12 1 0.04
13 11 0.41
14 6 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
TTAAAATAAATAT
Found at i:20762670 original size:96 final size:95
Alignment explanation
Indices: 20762495--20762772 Score: 358
Period size: 95 Copynumber: 2.8 Consensus size: 95
20762485 TAAAATAAAA
20762495 TAAAATAAAATATTTAAAATAAAACTTTAAACACAATTTAATTTAATTAGGTAATTTAAAAATAA
1 TAAAATAAAATATTTAAAATAAAACTTTAAACACAATTTAATTTAATTAGGTAATTTAAAAATAA
* *
20762560 AATAAAAGTAGACAAAATATTTTTCGTGAT
66 AATAAAAGTAGACAAAAAAATTTTCGTGAT
* *
20762590 TAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTTATTTTAAAAATA
1 TAAAATAAAATATTTAAAATAAAACTTTAAACACAATTTAATTTAATTAGG-TAATTTAAAAATA
20762655 AAATAAAAGTAGACAAAAAAATTTTCGTGATTAAATT
65 AAATAAAAGTAGACAAAAAAATTTTCGTG-----A-T
* *
20762692 AAAATAAAATAAAATAACATATTCAAAATAAAAATTTAAATACAATTTAATTTAATTAGGTAATT
1 ----TAAAATAAAAT---AT-TT-AAAATAAAACTTTAAACACAATTTAATTTAATTAGGTAATT
20762757 TAAAAATAAAATAAAA
57 TAAAAATAAAATAAAA
20762773 TATTTAAAAT
Statistics
Matches: 161, Mismatches: 6, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
95 50 0.31
96 39 0.24
101 1 0.01
102 1 0.01
106 11 0.07
109 2 0.01
110 22 0.14
111 35 0.22
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.34
Consensus pattern (95 bp):
TAAAATAAAATATTTAAAATAAAACTTTAAACACAATTTAATTTAATTAGGTAATTTAAAAATAA
AATAAAAGTAGACAAAAAAATTTTCGTGAT
Found at i:20765685 original size:19 final size:21
Alignment explanation
Indices: 20765639--20765689 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 21
20765629 GGGGTTGAAA
*
20765639 CAAATAAAAATAATAATAATTG
1 CAAAT-AAAATAATAAAAATTG
20765661 CGAAATAAAAT-ATAAAAATT-
1 C-AAATAAAATAATAAAAATTG
20765681 CAAATAAAA
1 CAAATAAAA
20765690 GTAGATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 8 0.30
20 1 0.04
21 8 0.30
22 6 0.22
23 4 0.15
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (21 bp):
CAAATAAAATAATAAAAATTG
Found at i:20779844 original size:17 final size:18
Alignment explanation
Indices: 20779814--20779849 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
20779804 CAAATCTATT
20779814 ATTTTTTAGAAATTTTAA
1 ATTTTTTAGAAATTTTAA
*
20779832 ATTTTTTA-TAATTTTAA
1 ATTTTTTAGAAATTTTAA
20779849 A
1 A
20779850 AAAAAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
ATTTTTTAGAAATTTTAA
Found at i:20782888 original size:16 final size:16
Alignment explanation
Indices: 20782867--20782920 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
20782857 AGAACTAGAT
20782867 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
20782883 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
20782893 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
20782909 AAAATTTGAAAT
1 AAAATTTGAAAT
20782921 TATTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:20783063 original size:7 final size:7
Alignment explanation
Indices: 20783036--20783102 Score: 62
Period size: 7 Copynumber: 9.0 Consensus size: 7
20783026 CACTAATTAT
20783036 CCTAAAC
1 CCTAAAC
20783043 CCATAAACC
1 CC-TAAA-C
20783052 CCTAAAC
1 CCTAAAC
20783059 CCTAAAC
1 CCTAAAC
*
20783066 CCTTAATC
1 CC-TAAAC
20783074 CCTAAAC
1 CCTAAAC
**
20783081 TTTAAAC
1 CCTAAAC
*
20783088 CATAAAAC
1 CCT-AAAC
20783096 CCTAAAC
1 CCTAAAC
20783103 TATGTCCACT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
7 26 0.53
8 20 0.41
9 3 0.06
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.19
Consensus pattern (7 bp):
CCTAAAC
Found at i:20783066 original size:15 final size:15
Alignment explanation
Indices: 20783036--20783102 Score: 64
Period size: 15 Copynumber: 4.5 Consensus size: 15
20783026 CACTAATTAT
20783036 CCTAAACCCATAAACC
1 CCTAAACCC-TAAACC
20783052 CCTAAACCCTAAACC
1 CCTAAACCCTAAACC
* *
20783067 CTTAATCCCTAAA-C
1 CCTAAACCCTAAACC
** * *
20783081 TTTAAACCATAAAAC
1 CCTAAACCCTAAACC
20783096 CCTAAAC
1 CCTAAAC
20783103 TATGTCCACT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
14 11 0.26
15 23 0.53
16 9 0.21
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.19
Consensus pattern (15 bp):
CCTAAACCCTAAACC
Found at i:20783086 original size:22 final size:22
Alignment explanation
Indices: 20783037--20783103 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
20783027 ACTAATTATC
* *
20783037 CTAAACCCATAAACCCCTAAACC
1 CTAAA-CCATAAAACCCTAAACT
* * *
20783060 CTAAACCCTTAATCCCTAAACT
1 CTAAACCATAAAACCCTAAACT
*
20783082 TTAAACCATAAAACCCTAAACT
1 CTAAACCATAAAACCCTAAACT
20783104 ATGTCCACTT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 31 0.86
23 5 0.14
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (22 bp):
CTAAACCATAAAACCCTAAACT
Found at i:20783131 original size:7 final size:7
Alignment explanation
Indices: 20783111--20783162 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
20783101 ACTATGTCCA
20783111 CTTAACC
1 CTTAACC
20783118 TCTTAACC
1 -CTTAACC
20783126 CTTAACC
1 CTTAACC
*
20783133 CCTAGACC
1 CTTA-ACC
*
20783141 CTCAACC
1 CTTAACC
**
20783148 CTTAAAT
1 CTTAACC
20783155 CTTAACC
1 CTTAACC
20783162 C
1 C
20783163 CTAAATCATA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
7 23 0.66
8 12 0.34
ACGTcount: A:0.29, C:0.42, G:0.02, T:0.27
Consensus pattern (7 bp):
CTTAACC
Found at i:20783214 original size:7 final size:7
Alignment explanation
Indices: 20783202--20783386 Score: 102
Period size: 7 Copynumber: 25.1 Consensus size: 7
20783192 TCAACCCTTG
20783202 AACCATA
1 AACCATA
20783209 AACCATA
1 AACCATA
* *
20783216 ATCCCTCA
1 AACCAT-A
*
20783224 ATCCATA
1 AACCATA
*
20783231 ATCCATA
1 AACCATA
*
20783238 AACCTTA
1 AACCATA
** *
20783245 AAATATT
1 AACCATA
20783252 AACTCATA
1 AAC-CATA
20783260 AACCATA
1 AACCATA
*
20783267 AACCCCTA
1 AA-CCATA
*
20783275 AACCTTA
1 AACCATA
*
20783282 AACCCTA
1 AACCATA
20783289 AACTCATA
1 AAC-CATA
* *
20783297 ATCCCTA
1 AACCATA
20783304 AACCCATGCA
1 AA-CCAT--A
20783314 TAATCCATA
1 -AA-CCATA
*
20783323 AACCTTA
1 AACCATA
**
20783330 AAATATA
1 AACCATA
20783337 AACCATA
1 AACCATA
20783344 AACTC-TA
1 AAC-CATA
20783351 AACCATA
1 AACCATA
* *
20783358 TACCCTA
1 AACCATA
20783365 AACCATA
1 AACCATA
20783372 AACCATA
1 AACCATA
*
20783379 AACTATA
1 AACCATA
20783386 A
1 A
20783387 TGATAATTAA
Statistics
Matches: 136, Mismatches: 32, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
6 1 0.01
7 99 0.73
8 28 0.21
9 1 0.01
10 1 0.01
11 6 0.04
ACGTcount: A:0.48, C:0.29, G:0.01, T:0.23
Consensus pattern (7 bp):
AACCATA
Found at i:20783604 original size:14 final size:14
Alignment explanation
Indices: 20783585--20783611 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20783575 TACGTGTCAT
20783585 TAGTTTAGGGTTTA
1 TAGTTTAGGGTTTA
20783599 TAGTTTAGGGTTT
1 TAGTTTAGGGTTT
20783612 GGGATTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (14 bp):
TAGTTTAGGGTTTA
Found at i:20785249 original size:27 final size:27
Alignment explanation
Indices: 20785218--20785269 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
20785208 CCAATGAACC
*
20785218 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
20785245 GGGGAATCAGCACATAGCAACCCCT
1 GGGGAATCAGCACATAGCAACCCCT
20785270 TTCACATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.25, T:0.13
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTCG
Found at i:20785261 original size:103 final size:103
Alignment explanation
Indices: 20785082--20785345 Score: 413
Period size: 103 Copynumber: 2.6 Consensus size: 103
20785072 AACCGTTATT
* * * *
20785082 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
20785147 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATAC
*
20785185 GGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
20785250 ATCAGCACATAGCAACCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCTTTCACATTTCAAAGATAC
* **
20785288 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
20785346 TTATGTACAA
Statistics
Matches: 148, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
102 7 0.05
103 141 0.95
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (103 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCTTTCACATTTCAAAGATAC
Found at i:20792297 original size:103 final size:104
Alignment explanation
Indices: 20792118--20792382 Score: 415
Period size: 103 Copynumber: 2.6 Consensus size: 104
20792108 AACCGTTATT
* * * * *
20792118 GGTGGATCTCGTACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
20792183 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
20792221 GGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
20792286 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
20792325 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
20792383 TTATGTACAA
Statistics
Matches: 148, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 82 0.55
104 66 0.45
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:20792751 original size:30 final size:30
Alignment explanation
Indices: 20792717--20792774 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
20792707 CCACCCAACT
20792717 TTTTGAAAAATTACAA-TTTTGCCCCCAAAC
1 TTTTGAAAAATTA-AACTTTTGCCCCCAAAC
* * *
20792747 TTTTGCATAATTAAACTTTTGTCCCCAA
1 TTTTGAAAAATTAAACTTTTGCCCCCAA
20792775 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTAAACTTTTGCCCCCAAAC
Found at i:20794296 original size:154 final size:155
Alignment explanation
Indices: 20794001--20794298 Score: 359
Period size: 154 Copynumber: 1.9 Consensus size: 155
20793991 GGCGTTTTTC
* * *
20794001 AAAAAGCGTCGCTAATACTCAATCTATTGTGGCATTTTCCACAAAGCACCGCTAGTGCCAATGAA
1 AAAAAGCGCCGCTAATACTCAATCTATTGTGGCATTTTCCACAAAGCACCGCTAATGCCAATAAA
* ** * * * * *
20794066 GCTCAAAGTAAAACGACGTAGTTCTTCTTAATCTTTTAGCGGCGTTTTTGAAAAAACACTGTATA
66 GCTCAAAATAAAACGACGTAGTTCGACTTAATCTTTTAACGGCATTTCTGAAAAAACACCGTAAA
20794131 GGTCGACCTATAGCAGCGCTCTATT
131 GGTCGACCTATAGCAGCGCTCTATT
* * * ** * * *
20794156 AAAAA-CGCCGCTAATGCTCGATCTATTGTGGCGTTTTTGAGAAAGCGCCGCTAATGCCACTAAA
1 AAAAAGCGCCGCTAATACTCAATCTATTGTGGCATTTTCCACAAAGCACCGCTAATGCCAATAAA
*
20794220 GCTCAAAAT-AAACGACGTCGTTCGACTTAATCTTTTAACGGCATTTCT-ATAAAAACACCGCTA
66 GCTCAAAATAAAACGACGTAGTTCGACTTAATCTTTTAACGGCATTTCTGA-AAAAACACCG-TA
* *
20794283 AAGTTCGATCTATAGC
129 AAGGTCGACCTATAGC
20794299 GCCGCTAATA
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
152 1 0.01
153 42 0.35
154 71 0.60
155 5 0.04
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (155 bp):
AAAAAGCGCCGCTAATACTCAATCTATTGTGGCATTTTCCACAAAGCACCGCTAATGCCAATAAA
GCTCAAAATAAAACGACGTAGTTCGACTTAATCTTTTAACGGCATTTCTGAAAAAACACCGTAAA
GGTCGACCTATAGCAGCGCTCTATT
Found at i:20794362 original size:12 final size:12
Alignment explanation
Indices: 20794345--20794372 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
20794335 TTTTCTATTC
20794345 AAACGCCGCTAA
1 AAACGCCGCTAA
20794357 AAACGCCGCTAA
1 AAACGCCGCTAA
20794369 AAAC
1 AAAC
20794373 CTGTTTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.32, G:0.14, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:20796936 original size:46 final size:46
Alignment explanation
Indices: 20796882--20797155 Score: 216
Period size: 46 Copynumber: 5.8 Consensus size: 46
20796872 TATTTGGGCA
* * *
20796882 TCCGAACTCGTTGAATTGAGTCCGACTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * * * *
20796928 TCCGAACTCGTTAAGTTGAGT-TGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTT-ATG-GATGTAA--A--CG
* *
20796980 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * *
20797026 TTCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTAA--A--CG
* **
20797073 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
20797119 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20797156 GCGGGTTACA
Statistics
Matches: 179, Mismatches: 32, Indels: 34
0.73 0.13 0.14
Matches are distributed among these distances:
42 4 0.02
43 5 0.03
45 6 0.03
46 81 0.45
47 28 0.16
48 9 0.05
50 12 0.07
51 6 0.03
52 23 0.13
53 5 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:20796998 original size:47 final size:47
Alignment explanation
Indices: 20796942--20797101 Score: 195
Period size: 47 Copynumber: 3.4 Consensus size: 47
20796932 AACTCGTTAA
*
20796942 GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTC
* * *
20796989 GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G--TTCGAACTC
1 GTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCATCCGAACTC
* *
20797035 GTTGAGTTGAGTCCGAGTTTGTGAAATGTAACTAGGCATCCGAACTC
1 GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTC
20797082 GTTGAGTTGAGTCCGAGTTC
1 GTTGAGTTGAGTCCGAGTTC
20797102 ACTTATGAAT
Statistics
Matches: 94, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 26 0.28
47 47 0.50
48 3 0.03
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (47 bp):
GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTC
Found at i:20797091 original size:98 final size:93
Alignment explanation
Indices: 20796878--20797148 Score: 398
Period size: 93 Copynumber: 2.9 Consensus size: 93
20796868 CGGATATTTG
* * *
20796878 GGCATCCGAACTCGTTGAATTGAGTCCGACTTCACTTATGGATGCAAACGTCCGAACTCGTTAAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTC-----G
*
20796943 TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
61 TTGAGTTGAGTCCGAGTTCGTGAAATGTAACTA
* * *
20796976 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
20797041 TTGAGTCCGAGTTTGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * *
20797069 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
20797134 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
20797149 CTTATGGGCG
Statistics
Matches: 158, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
93 105 0.66
98 53 0.34
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:20800145 original size:15 final size:15
Alignment explanation
Indices: 20800125--20800178 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
20800115 TATCGTTTCT
20800125 TGGATTTCTTTATTC
1 TGGATTTCTTTATTC
* *
20800140 TGGATTT-TTCAATC
1 TGGATTTCTTTATTC
20800154 TTGGATTTCTTTATTC
1 -TGGATTTCTTTATTC
*
20800170 -GGTTTTCTT
1 TGGATTTCTT
20800179 GTTATCTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 13 0.41
15 14 0.44
16 5 0.16
ACGTcount: A:0.13, C:0.13, G:0.15, T:0.59
Consensus pattern (15 bp):
TGGATTTCTTTATTC
Found at i:20802962 original size:46 final size:46
Alignment explanation
Indices: 20802911--20803083 Score: 188
Period size: 46 Copynumber: 3.6 Consensus size: 46
20802901 TATTTGGGCA
20802911 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
20802957 TCCGAACTCGTTGAGTTGAGT-TGAGTCCGAGTTCGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTT-ATG-GATGCGAAC---G
*
20803007 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
20803055 TTCGAACTCGTTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
20803084 GTGAAATGTA
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
45 5 0.05
46 50 0.49
47 5 0.05
48 5 0.05
50 5 0.05
51 5 0.05
52 23 0.22
53 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:20803037 original size:47 final size:47
Alignment explanation
Indices: 20802971--20803131 Score: 179
Period size: 47 Copynumber: 3.4 Consensus size: 47
20802961 AACTCGTTGA
*
20802971 GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTC
* * * *
20803018 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TTCGAACTC
1 GTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAACTC
* *
20803064 GTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCATCCGAACTC
1 GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTC
*
20803111 GTTGAGTTGAGTCTGAGTTCG
1 GTTGAGTTGAGTCCGAGTTCG
20803132 CTTATGGGCG
Statistics
Matches: 94, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 3 0.03
46 26 0.28
47 49 0.52
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (47 bp):
GTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTC
Found at i:20803093 original size:93 final size:94
Alignment explanation
Indices: 20802907--20803138 Score: 367
Period size: 93 Copynumber: 2.4 Consensus size: 94
20802897 TGGATATTTG
20802907 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTC---G-G
*
20802972 TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
62 TTGAGTTGAGTCCGAGTTCGTGAAATGTAACTA
* *
20803005 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCGAACTC-GTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGGTTGA
*
20803069 GTTGAGTCTGAGTTCGTGAAATGTAACTA
66 GTTGAGTCCGAGTTCGTGAAATGTAACTA
* *
20803098 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20803139 GCGGGTTACA
Statistics
Matches: 127, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
93 70 0.55
98 57 0.45
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (94 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGGTTGA
GTTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:20808706 original size:29 final size:29
Alignment explanation
Indices: 20808673--20808731 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
20808663 TCATAATGTA
20808673 AGTTTTGGACTGAATTGAGTAAGTTTTGG
1 AGTTTTGGACTGAATTGAGTAAGTTTTGG
20808702 AGTTTTGGACTGAATTGAGTAAGTTTTGG
1 AGTTTTGGACTGAATTGAGTAAGTTTTGG
20808731 A
1 A
20808732 CTGAATTGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.03, G:0.31, T:0.41
Consensus pattern (29 bp):
AGTTTTGGACTGAATTGAGTAAGTTTTGG
Found at i:20808728 original size:21 final size:21
Alignment explanation
Indices: 20808702--20808744 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
20808692 TAAGTTTTGG
20808702 AGTTTTGGACTGAATTGAGTA
1 AGTTTTGGACTGAATTGAGTA
20808723 AGTTTTGGACTGAATTGAGTA
1 AGTTTTGGACTGAATTGAGTA
20808744 A
1 A
20808745 TGTGATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.37
Consensus pattern (21 bp):
AGTTTTGGACTGAATTGAGTA
Found at i:20817042 original size:20 final size:21
Alignment explanation
Indices: 20817000--20817038 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
20816990 AAGTAACTTT
*
20817000 AATAATAATGATAAAATAATA
1 AATAATAATGATAAAAAAATA
20817021 AATAA-AATGA-AAAAAAAT
1 AATAATAATGATAAAAAAAT
20817039 TAAAAGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 5 0.29
21 5 0.29
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
AATAATAATGATAAAAAAATA
Found at i:20818246 original size:43 final size:43
Alignment explanation
Indices: 20818185--20818270 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
20818175 TATGTGATTG
*
20818185 ATATTGAAATGGAAAAGAT-GAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGGAAAAGATAG-GAAATGAATATGAAATGAGAAA
*
20818228 ATATTGAAATGGAAAAGATAGGAAATGATTATGAAATGAGAAA
1 ATATTGAAATGGAAAAGATAGGAAATGAATATGAAATGAGAAA
20818271 TGAAATATGA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 39 0.98
44 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.22
Consensus pattern (43 bp):
ATATTGAAATGGAAAAGATAGGAAATGAATATGAAATGAGAAA
Found at i:20821575 original size:23 final size:25
Alignment explanation
Indices: 20821549--20821595 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
20821539 TATCATTCAT
*
20821549 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
20821572 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
20821596 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:20821916 original size:46 final size:46
Alignment explanation
Indices: 20821856--20822121 Score: 334
Period size: 46 Copynumber: 6.0 Consensus size: 46
20821846 TTTGACGTGA
* * * * * *
20821856 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
20821902 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
20821948 TGCCATAGTATATTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
20821994 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
20822040 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
20822078 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
20822122 AGAGCACACT
Statistics
Matches: 194, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
38 33 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 147 0.76
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:20822086 original size:38 final size:38
Alignment explanation
Indices: 20822035--20822110 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
20822025 CATTTCATAT
20822035 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
20822073 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
20822111 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:20824265 original size:11 final size:11
Alignment explanation
Indices: 20824249--20824294 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
20824239 CTTTATATAC
20824249 TAATAAAATAA
1 TAATAAAATAA
*
20824260 TAATAAAATAT
1 TAATAAAATAA
* * *
20824271 TATTAAAGTAT
1 TAATAAAATAA
20824282 TAATAAAATAA
1 TAATAAAATAA
20824293 TA
1 TA
20824295 TTTATCTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:20824277 original size:22 final size:22
Alignment explanation
Indices: 20824252--20824296 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
20824242 TATATACTAA
*
20824252 TAAAATAATAATAAAATATTAT
1 TAAAATAATAATAAAATAATAT
* *
20824274 TAAAGTATTAATAAAATAATAT
1 TAAAATAATAATAAAATAATAT
20824296 T
1 T
20824297 TATCTAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
TAAAATAATAATAAAATAATAT
Found at i:20824949 original size:13 final size:13
Alignment explanation
Indices: 20824931--20824958 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
20824921 GTCATCAAAA
20824931 ACAACATGTATAG
1 ACAACATGTATAG
20824944 ACAACATGTATAG
1 ACAACATGTATAG
20824957 AC
1 AC
20824959 TCTTCTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.21
Consensus pattern (13 bp):
ACAACATGTATAG
Found at i:20827499 original size:32 final size:32
Alignment explanation
Indices: 20827456--20827519 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
20827446 AAGGTCTCAT
20827456 AATTGAAAGTGATGATTCCCACATTTGATTTC
1 AATTGAAAGTGATGATTCCCACATTTGATTTC
*
20827488 AATTGAGAGTGATGATTCCCACATTTGATTTC
1 AATTGAAAGTGATGATTCCCACATTTGATTTC
20827520 TTCACTTGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (32 bp):
AATTGAAAGTGATGATTCCCACATTTGATTTC
Found at i:20831398 original size:16 final size:16
Alignment explanation
Indices: 20831374--20831408 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
20831364 AAATTAATTT
*
20831374 TTTTTAAATTATAAAA
1 TTTTCAAATTATAAAA
*
20831390 TTTTCAAATTATAGAA
1 TTTTCAAATTATAAAA
20831406 TTT
1 TTT
20831409 AAAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (16 bp):
TTTTCAAATTATAAAA
Found at i:20848430 original size:5 final size:6
Alignment explanation
Indices: 20848414--20848438 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
20848404 AAAACACATT
20848414 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
20848439 CTAATCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:20854502 original size:22 final size:22
Alignment explanation
Indices: 20854477--20854521 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
20854467 TTTAATAAAG
20854477 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
20854499 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
20854521 A
1 A
20854522 CACTCCCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:20858277 original size:22 final size:22
Alignment explanation
Indices: 20858252--20858301 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
20858242 TTTAATAAAG
20858252 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
20858274 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
*
20858296 ACAATA
1 AAAATA
20858302 ATACACAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:20869993 original size:33 final size:33
Alignment explanation
Indices: 20869955--20870021 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
20869945 CATAGCATAA
20869955 TTTCATGACATGTTCTTCATTTATTCAATTTAG
1 TTTCATGACATGTTCTTCATTTATTCAATTTAG
20869988 TTTCATGACATGTTCTTCATTTATTCAATTTAG
1 TTTCATGACATGTTCTTCATTTATTCAATTTAG
20870021 T
1 T
20870022 CCCTAATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (33 bp):
TTTCATGACATGTTCTTCATTTATTCAATTTAG
Found at i:20872108 original size:47 final size:47
Alignment explanation
Indices: 20871999--20872101 Score: 145
Period size: 47 Copynumber: 2.2 Consensus size: 47
20871989 CCGGGATAAG
* *
20871999 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCAGAATAAATCCGGAACTTTAACAGTATAGTA
* * *
20872046 CACAAAGTACTTCATCAGAATAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCAGAATAAATCCGGAACTTTAACAGTA-TAGTA
20872093 CACATAGTG
1 CACATAGTG
20872102 TCTCATCGAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 46 0.96
48 2 0.04
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCAGAATAAATCCGGAACTTTAACAGTATAGTA
Found at i:20874628 original size:21 final size:20
Alignment explanation
Indices: 20874600--20874644 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
20874590 ATCTAAACAG
20874600 AACTGCTGATGTGGCAAGTT
1 AACTGCTGATGTGGCAAGTT
*
20874620 AACTAGCTGATGTGGCCAGTT
1 AACT-GCTGATGTGGCAAGTT
20874641 AACT
1 AACT
20874645 TGCCACGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (20 bp):
AACTGCTGATGTGGCAAGTT
Found at i:20875908 original size:3 final size:3
Alignment explanation
Indices: 20875895--20875936 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
20875885 TTTTCAGCTT
* * *
20875895 TTC TT- TTC TTC TTC TTC CTA TTA TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
20875937 CTGTTAAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.05, C:0.29, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:20876018 original size:21 final size:21
Alignment explanation
Indices: 20875992--20876032 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
20875982 CAACGTGGCA
20875992 AGTTAACTGGCCACATCAGCT
1 AGTTAACTGGCCACATCAGCT
*
20876013 AGTTAACTTGCCACATCAGC
1 AGTTAACTGGCCACATCAGC
20876033 CGTTCTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (21 bp):
AGTTAACTGGCCACATCAGCT
Found at i:20887720 original size:86 final size:85
Alignment explanation
Indices: 20887478--20887720 Score: 317
Period size: 86 Copynumber: 2.8 Consensus size: 85
20887468 AGCCCATGTT
* * *
20887478 TTTTCTTTGCACTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAGGGCCCTTAAACTTTTT
1 TTTT-TTT-CACTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGCCCCTCAAACTTTTT
* *
20887543 CAAAAAAGTAATTAAGCCCCTA
64 CAAAAAAATAACTAAGCCCCTA
** * * * * *
20887565 -TTTTCCCATTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGCCTCTCAAACTTCTCCA
1 TTTTTTTCACTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGCCCCTCAAACTTTTTCA
*
20887629 CAAAAATCAACTAAGCCCCTA
66 AAAAAAT-AACTAAGCCCCTA
* *
20887650 TTTTTTTCACTCAATTGGGTACTTGAACTTTCAAAACACATAAAAAAGCCCCTCAAACTTTTTCA
1 TTTTTTTCACTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGCCCCTCAAACTTTTTCA
20887715 AAAAAA
66 AAAAAA
20887721 GCAATTAAAC
Statistics
Matches: 131, Mismatches: 23, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
84 55 0.42
85 13 0.10
86 63 0.48
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.31
Consensus pattern (85 bp):
TTTTTTTCACTCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGCCCCTCAAACTTTTTCA
AAAAAATAACTAAGCCCCTA
Found at i:20887950 original size:20 final size:20
Alignment explanation
Indices: 20887927--20887974 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
20887917 AATAAAAGTT
*
20887927 ATAAAAATGA-TTAACTTTTA
1 ATAAAAAT-ATTTAAATTTTA
20887947 ATAAAAATATTTAAATTTTA
1 ATAAAAATATTTAAATTTTA
*
20887967 TTAAAAAT
1 ATAAAAAT
20887975 TAGAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (20 bp):
ATAAAAATATTTAAATTTTA
Found at i:20888012 original size:9 final size:9
Alignment explanation
Indices: 20888000--20888080 Score: 74
Period size: 10 Copynumber: 8.6 Consensus size: 9
20887990 AAAAATTGTA
20888000 AAAATATAT
1 AAAATATAT
20888009 AAAATATAT
1 AAAATATAT
*
20888018 AAAATTTTAT
1 AAAA-TATAT
20888028 AAAA-ATCAT
1 AAAATAT-AT
*
20888037 AAAAAATTAT
1 AAAATA-TAT
20888047 AAAATATAT
1 AAAATATAT
*
20888056 AGAAATATAG
1 A-AAATATAT
*
20888066 AAAAAATTAT
1 AAAATA-TAT
20888076 AAAAT
1 AAAAT
20888081 TTTATAAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
8 1 0.02
9 27 0.46
10 30 0.51
11 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAATATAT
Found at i:20888020 original size:19 final size:19
Alignment explanation
Indices: 20887998--20888079 Score: 78
Period size: 19 Copynumber: 4.3 Consensus size: 19
20887988 ATAAAAATTG
20887998 TAAAAATATATAAAATATA
1 TAAAAATATATAAAATATA
* *
20888017 TAAAATTTTATAAAA-ATCA
1 TAAAAATATATAAAATAT-A
20888036 TAAAAA-ATTATAAAATATA
1 TAAAAATA-TATAAAATATA
* * *
20888055 TAGAAATATAGAAAAAATTA
1 TAAAAATATATAAAATA-TA
20888075 TAAAA
1 TAAAA
20888080 TTTTATAAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
18 2 0.04
19 39 0.78
20 9 0.18
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.30
Consensus pattern (19 bp):
TAAAAATATATAAAATATA
Found at i:20888030 original size:29 final size:29
Alignment explanation
Indices: 20887998--20888088 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 29
20887988 ATAAAAATTG
*
20887998 TAAAAATATATAAAATATATAAAATTTTA
1 TAAAAATATAAAAAATATATAAAATTTTA
*
20888027 TAAAAATCATAAAAAAT-TATAAAA-TATA
1 TAAAAAT-ATAAAAAATATATAAAATTTTA
*
20888055 TAGAAATATAGAAAAA-ATTATAAAATTTTA
1 TAAAAATATA-AAAAATA-TATAAAATTTTA
20888085 TAAA
1 TAAA
20888089 GTCGTAAGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
27 3 0.06
28 14 0.27
29 21 0.40
30 14 0.27
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (29 bp):
TAAAAATATAAAAAATATATAAAATTTTA
Found at i:20888040 original size:38 final size:39
Alignment explanation
Indices: 20887984--20888061 Score: 115
Period size: 38 Copynumber: 2.0 Consensus size: 39
20887974 TTAGAAATTT
**
20887984 TTTTATAAAAATTGT-AAAAATATATAAAATATATA-AAA
1 TTTTATAAAAATCATAAAAAAT-TATAAAATATATAGAAA
20888022 TTTTATAAAAATCATAAAAAATTATAAAATATATAGAAA
1 TTTTATAAAAATCATAAAAAATTATAAAATATATAGAAA
20888061 T
1 T
20888062 ATAGAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 26 0.72
39 10 0.28
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (39 bp):
TTTTATAAAAATCATAAAAAATTATAAAATATATAGAAA
Found at i:20888087 original size:58 final size:60
Alignment explanation
Indices: 20888009--20888124 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 60
20887999 AAAAATATAT
*
20888009 AAAATATATAAAATTTTATAAAAATCATAA-AAAATTAT-AAAATATATAGAAATATAGAA
1 AAAATATATAAAATTTTAT-AAAATCATAAGAAAATTATAAAAATATAAAGAAATATAGAA
* * *
20888068 AAAAT-TATAAAATTTTATAAAGTCGTAAGAAAATTATGAAAAATGTAAAGAAATATA
1 AAAATATATAAAATTTTATAAAATCATAAGAAAATTAT-AAAAATATAAAGAAATATA
20888125 AAATTCGTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
57 8 0.16
58 21 0.42
59 5 0.10
60 16 0.32
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (60 bp):
AAAATATATAAAATTTTATAAAATCATAAGAAAATTATAAAAATATAAAGAAATATAGAA
Found at i:20888100 original size:29 final size:28
Alignment explanation
Indices: 20888007--20888109 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 28
20887997 GTAAAAATAT
*
20888007 ATAAAATA-TATAAAATTTTATAAAAATC
1 ATAAAAAATTATAAAATTTTAT-AAAATC
*
20888035 ATAAAAAATTATAAAA-TATATAGAAAT-
1 ATAAAAAATTATAAAATTTTATA-AAATC
*
20888062 ATAGAAAAAATTATAAAATTTTATAAAGTC
1 AT--AAAAAATTATAAAATTTTATAAAATC
*
20888092 GTAAGAAAATTATGAAAA
1 ATAA-AAAATTAT-AAAA
20888110 ATGTAAAGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
27 3 0.05
28 17 0.27
29 32 0.52
30 10 0.16
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (28 bp):
ATAAAAAATTATAAAATTTTATAAAATC
Found at i:20893202 original size:26 final size:26
Alignment explanation
Indices: 20893173--20893414 Score: 232
Period size: 26 Copynumber: 9.3 Consensus size: 26
20893163 CGTAATGTAC
** *
20893173 TTTATTTAATAGGCTTTGAGTCGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* * ** *
20893199 TTTATTTAGCAAGTTTTGAGCTAGTT
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* *
20893225 TTTATTTAGCATGCTTTGAGCTGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* *
20893251 TTTATTTAGAAGGCTTTGAGCCGATG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* *
20893277 ATTATTTAGCAGGCCTTGAGCCGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* * *
20893303 TGTATTTAGTAGGCCTTGAGCCGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* * **
20893329 TGTATTTAGCAGGCCTTGAGCCAATG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* *
20893355 TTGATCTAGCAGGCTTTGAGCCGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* * * *
20893381 ATTATTTAGTAGGCTTTGAGTCAGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
*
20893407 ATTATTTA
1 TTTATTTA
20893415 ACATGTAACA
Statistics
Matches: 178, Mismatches: 38, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 178 1.00
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40
Consensus pattern (26 bp):
TTTATTTAGCAGGCTTTGAGCCGGTG
Found at i:20902871 original size:93 final size:93
Alignment explanation
Indices: 20902758--20902928 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
20902748 GCCCCTAAGT
* *
20902758 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20902823 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
20902851 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20902916 CGAGTTCGGATGC
66 CGAGTTCGGATGC
20902929 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAATGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:20902925 original size:46 final size:46
Alignment explanation
Indices: 20902753--20902925 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
20902743 AACCCGCCCC
* * * *
20902753 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
20902799 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
20902847 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
20902892 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
20902926 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:20904729 original size:19 final size:20
Alignment explanation
Indices: 20904676--20904727 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
20904666 AGAAAAAAAT
***
20904676 AAAAATATAATTTTTTTTCA
1 AAAAATATAATAAATTTTCA
20904696 AAAAATATAATAAATTTT-A
1 AAAAATATAATAAATTTTCA
20904715 AAAAATAT-ATAAA
1 AAAAATATAATAAA
20904728 ATAAAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 5 0.17
19 9 0.31
20 15 0.52
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATATAATAAATTTTCA
Found at i:20904809 original size:23 final size:24
Alignment explanation
Indices: 20904774--20904821 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
20904764 AAATAAAAAA
*
20904774 TTTAAAAATATATAAAAATATATT
1 TTTAAAAATATATAAAAATAAATT
*
20904798 TTTAAAAA-ATATAACAATAAATT
1 TTTAAAAATATATAAAAATAAATT
20904821 T
1 T
20904822 AAAATTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
TTTAAAAATATATAAAAATAAATT
Found at i:20904831 original size:21 final size:21
Alignment explanation
Indices: 20904753--20904831 Score: 59
Period size: 23 Copynumber: 3.5 Consensus size: 21
20904743 TGACAATAAA
* *
20904753 TAAAATAAATAAAATAAAAAATT
1 TAAAATATAT-AAA-AATAAATT
*
20904776 TAAAAATATATAAAAATATATTTT
1 T-AAAATATATAAAAATA-A-ATT
* *
20904800 TAAAAAATATAACAATAAATT
1 TAAAATATATAAAAATAAATT
*
20904821 TAAAATTTATA
1 TAAAATATATA
20904832 TTAATGTTAC
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
21 11 0.24
22 4 0.09
23 19 0.42
24 11 0.24
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (21 bp):
TAAAATATATAAAAATAAATT
Found at i:20904870 original size:5 final size:5
Alignment explanation
Indices: 20904862--20904887 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
20904852 TTATATTAAT
20904862 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
20904888 ATCCCTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:20904870 original size:25 final size:24
Alignment explanation
Indices: 20904827--20904875 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
20904817 AATTTAAAAT
* * *
20904827 TTATATTAATGTTACATAAATATAA
1 TTATATTAATATAAAATAAA-ATAA
20904852 TTATATTAATATAAAATAAAATAA
1 TTATATTAATATAAAATAAAATAA
20904876 AATAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (24 bp):
TTATATTAATATAAAATAAAATAA
Found at i:20907437 original size:18 final size:18
Alignment explanation
Indices: 20907414--20907461 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
20907404 AAAATGTGAG
*
20907414 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
20907432 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
20907450 AAATGATGTTCA
1 AAATGATGTTCA
20907462 AATTGATGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:20907717 original size:13 final size:13
Alignment explanation
Indices: 20907699--20907724 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20907689 GGAAGAAGTT
20907699 CCAGAAGCTAGTC
1 CCAGAAGCTAGTC
20907712 CCAGAAGCTAGTC
1 CCAGAAGCTAGTC
20907725 TGCTATACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (13 bp):
CCAGAAGCTAGTC
Found at i:20907984 original size:72 final size:71
Alignment explanation
Indices: 20907901--20908212 Score: 412
Period size: 72 Copynumber: 4.3 Consensus size: 71
20907891 CAATGCTAAA
* *
20907901 CTAGTTTTATCAATAGTTATTTATGTTTGGGTTCTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGGTTTTGGATATTGAATTTATGTTCTACTTATTTAT
20907966 GTGTAAT
66 GT-TAAT
* * *
20907973 CTAGTTTTATCAATGGCTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGGTTTTGGATATTGAATTTATGTTCTACTTATTTAT
20908038 GTGTAAT
66 GT-TAAT
* *
20908045 CTAGTTTTATTAATAGTTGTTTATGTTT-GGTCTTTGGATATTGAATTTATGGTCTACTTATTTA
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGGT-TTTGGATATTGAATTTATGTTCTACTTATTTA
**
20908109 TGCTTAGGG
65 TG-TTA-AT
* ** * *
20908118 CTAGTTTTATCAATAATTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATATAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGGTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
20908183 ACTAAAT
66 -GTTAAT
20908190 -TAGTTTTATCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTTGTTTAT
20908213 ATATGATTTT
Statistics
Matches: 211, Mismatches: 24, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
71 24 0.11
72 127 0.60
73 59 0.28
74 1 0.00
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.53
Consensus pattern (71 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGGTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTTAAT
Found at i:20910513 original size:28 final size:28
Alignment explanation
Indices: 20910481--20910564 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
20910471 AACTTCGATC
20910481 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
20910509 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
20910531 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
20910559 ACGTGT
1 ACGTGT
20910565 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:20910573 original size:101 final size:98
Alignment explanation
Indices: 20910379--20910608 Score: 316
Period size: 100 Copynumber: 2.3 Consensus size: 98
20910369 TATTGTGAGG
* *
20910379 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
*
20910444 AAGTGCAGGCTACTAAGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTAAGCGTACCGGATAA-TT-GA
* * ** *
20910479 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGTAGTAC
* * *
20910544 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTAAGCGTACCGGATAATTGA
* *
20910578 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
20910609 TGCGTACCAG
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 30 0.26
100 44 0.38
101 42 0.36
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTAAGCGTACCGGATAATTGA
Found at i:20910616 original size:49 final size:50
Alignment explanation
Indices: 20910376--20910621 Score: 307
Period size: 49 Copynumber: 4.9 Consensus size: 50
20910366 AGCTATTGTG
* * *
20910376 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
20910426 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
20910476 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
20910526 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
20910576 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
20910622 GCTTCGGCTA
Statistics
Matches: 167, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
49 81 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:20912136 original size:40 final size:40
Alignment explanation
Indices: 20912092--20912168 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
20912082 TTGATAATGG
20912092 GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT
1 GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT
*
20912132 GTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAAT
1 GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAAT
20912169 GTTCCATGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (40 bp):
GTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT
Found at i:20913698 original size:26 final size:26
Alignment explanation
Indices: 20913669--20913721 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20913659 TTTACAGTTT
20913669 TACCCATAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
20913695 TACCCCTAGGGTTAAATTGACCGAAA
1 TACCCATAGGGATAAATTGACCGAAA
20913721 T
1 T
20913722 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:20914214 original size:137 final size:136
Alignment explanation
Indices: 20913969--20914251 Score: 478
Period size: 137 Copynumber: 2.1 Consensus size: 136
20913959 GAGTAGTCTC
*
20913969 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
20914034 GTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCC-GATACC
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAG-TACC
20914098 ACTGTTA
130 ACTGTTA
*
20914105 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCTATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
20914170 TGTTATCTGAATAAGGGGCTAATGCCCAGTTTATTGTAATCTGAAAATGGCTTTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
20914235 ACTGTTA
130 ACTGTTA
*
20914242 CCTAAATGGG
1 CCCAAATGGG
20914252 TTTAGGCCCA
Statistics
Matches: 138, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
136 20 0.14
137 117 0.85
138 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:20915858 original size:3 final size:3
Alignment explanation
Indices: 20915843--20915881 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
20915833 GTCAAGAAAG
* * *
20915843 TGA TGA TGG TGA TGA TGA CGA TGA TGA TGG TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
20915882 CGGTGAATCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.28, C:0.03, G:0.38, T:0.31
Consensus pattern (3 bp):
TGA
Found at i:20915860 original size:12 final size:12
Alignment explanation
Indices: 20915843--20915887 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
20915833 GTCAAGAAAG
20915843 TGATGATGGTGA
1 TGATGATGGTGA
*
20915855 TGATGA---CGA
1 TGATGATGGTGA
20915864 TGATGATGGTGA
1 TGATGATGGTGA
*
20915876 TGATGACGGTGA
1 TGATGATGGTGA
20915888 ATCAAACAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
9 8 0.30
12 19 0.70
ACGTcount: A:0.27, C:0.04, G:0.40, T:0.29
Consensus pattern (12 bp):
TGATGATGGTGA
Found at i:20915869 original size:21 final size:21
Alignment explanation
Indices: 20915843--20915883 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
20915833 GTCAAGAAAG
20915843 TGATGATGGTGATGATGACGA
1 TGATGATGGTGATGATGACGA
20915864 TGATGATGGTGATGATGACG
1 TGATGATGGTGATGATGACG
20915884 GTGAATCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.39, T:0.29
Consensus pattern (21 bp):
TGATGATGGTGATGATGACGA
Found at i:20916251 original size:19 final size:19
Alignment explanation
Indices: 20916199--20916266 Score: 75
Period size: 19 Copynumber: 3.4 Consensus size: 19
20916189 TGTCAATATC
20916199 TAATTATAAATATTTAATTA
1 TAATT-TAAATATTTAATTA
*
20916219 TTATATTTAAATATTTAAATA
1 -TA-ATTTAAATATTTAATTA
*
20916240 TAATTTATATATTCTAATTA
1 TAATTTAAATATT-TAATTA
20916260 -AATTTAA
1 TAATTTAA
20916267 TAAATAATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 16 0.39
20 7 0.17
21 15 0.37
22 3 0.07
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATTTAAATATTTAATTA
Found at i:20918015 original size:21 final size:21
Alignment explanation
Indices: 20917991--20918037 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
20917981 TAGTTAAAGA
20917991 AAGCTGCTAGTTAATAATTTC
1 AAGCTGCTAGTTAATAATTTC
*
20918012 AAGCTGCTAGTTGATAATTTC
1 AAGCTGCTAGTTAATAATTTC
20918033 AAGCT
1 AAGCT
20918038 CAGCTTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (21 bp):
AAGCTGCTAGTTAATAATTTC
Found at i:20924749 original size:15 final size:15
Alignment explanation
Indices: 20924698--20924749 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
20924688 CCTAAAGTTA
20924698 TTAATTC-TAATTAT
1 TTAATTCTTAATTAT
* * *
20924712 TCTAATATTTTATTTAA
1 T-TAAT-TCTTAATTAT
20924729 TTAATTCTTAATTAT
1 TTAATTCTTAATTAT
20924744 TTAATT
1 TTAATT
20924750 ATATAATCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
14 1 0.03
15 17 0.59
16 5 0.17
17 6 0.21
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (15 bp):
TTAATTCTTAATTAT
Found at i:20924762 original size:32 final size:31
Alignment explanation
Indices: 20924697--20924763 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
20924687 ACCTAAAGTT
* * *
20924697 ATTAATTCTAATTATTCTAATATTTTATTTA
1 ATTAATTCTAATTATTCTAATATATAATCTA
20924728 ATTAATTCTTAATTATT-TAATTATATAATCTA
1 ATTAATTC-TAATTATTCTAA-TATATAATCTA
20924760 ATTA
1 ATTA
20924764 TAGTTTCCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 11 0.35
32 20 0.65
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (31 bp):
ATTAATTCTAATTATTCTAATATATAATCTA
Found at i:20925965 original size:40 final size:40
Alignment explanation
Indices: 20925905--20925989 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 40
20925895 GAATGTACAT
*
20925905 GATGCTGTGGTTAGTTGTTGACGGAAAAGAGTTAATTTGA
1 GATGTTGTGGTTAGTTGTTGACGGAAAAGAGTTAATTTGA
20925945 GATGTTGTGGTTAGTTGTTGACGGAAAAGAGTTAATTTGA
1 GATGTTGTGGTTAGTTGTTGACGGAAAAGAGTTAATTTGA
20925985 GATGT
1 GATGT
20925990 CCGAATGGCG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.27, C:0.04, G:0.33, T:0.36
Consensus pattern (40 bp):
GATGTTGTGGTTAGTTGTTGACGGAAAAGAGTTAATTTGA
Found at i:20929563 original size:40 final size:40
Alignment explanation
Indices: 20929506--20929637 Score: 162
Period size: 40 Copynumber: 3.3 Consensus size: 40
20929496 AATTATTAAA
*
20929506 TGTTTGCATAT-TCGTGCCCCTATTTGTACTTTGGTACCCT
1 TGTTTGCACATAT-GTGCCCCTATTTGTACTTTGGTACCCT
* * *
20929546 TGTTTGCACATATGTGCCCCTGTTTGTTCTTTGATA-CCT
1 TGTTTGCACATATGTGCCCCTATTTGTACTTTGGTACCCT
* *
20929585 CTGTTTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCT
1 -TGTTTGCACATATGTGCCCCTATTTGTACTTTGGTA-CCCT
20929627 T-TTTGCACATA
1 TGTTTGCACATA
20929638 AGTGTTCCTG
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
39 3 0.04
40 71 0.90
41 2 0.03
42 3 0.04
ACGTcount: A:0.14, C:0.27, G:0.17, T:0.42
Consensus pattern (40 bp):
TGTTTGCACATATGTGCCCCTATTTGTACTTTGGTACCCT
Found at i:20929569 original size:20 final size:20
Alignment explanation
Indices: 20929546--20929611 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
20929536 TTGGTACCCT
20929546 TGTTTGCACATATGTGCCCC
1 TGTTTGCACATATGTGCCCC
** * * *
20929566 TGTTTGTTC-TTTGATACCTC
1 TGTTTGCACATATG-TGCCCC
*
20929586 TGTTTGCACATACGTGCCCC
1 TGTTTGCACATATGTGCCCC
*
20929606 TATTTG
1 TGTTTG
20929612 TACTTCGGTA
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 3 0.09
20 27 0.84
21 2 0.06
ACGTcount: A:0.14, C:0.26, G:0.18, T:0.42
Consensus pattern (20 bp):
TGTTTGCACATATGTGCCCC
Found at i:20929652 original size:40 final size:40
Alignment explanation
Indices: 20929519--20929653 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
20929509 TTGCATATTC
* *
20929519 GTGCCCCTATTTGTACTTTGGTA-CCCTTGTTTGCACATAT
1 GTGCCCCTGTTTGTACTTTGGTACCCCTT-TTTGCACATAA
* * * * *
20929559 GTGCCCCTGTTTGTTCTTTGATACCTCTGTTTGCACATAC
1 GTGCCCCTGTTTGTACTTTGGTACCCCTTTTTGCACATAA
* *
20929599 GTGCCCCTATTTGTACTTCGGTACCCCTTTTTGCACATAA
1 GTGCCCCTGTTTGTACTTTGGTACCCCTTTTTGCACATAA
**
20929639 GTGTTCCTGTTTGTA
1 GTGCCCCTGTTTGTA
20929654 TTATGACAGC
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 75 0.96
41 3 0.04
ACGTcount: A:0.14, C:0.26, G:0.18, T:0.42
Consensus pattern (40 bp):
GTGCCCCTGTTTGTACTTTGGTACCCCTTTTTGCACATAA
Found at i:20933741 original size:30 final size:30
Alignment explanation
Indices: 20933707--20933774 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
20933697 ACACAGGTAG
20933707 GCACACGAGCGTGTGTCTAGGCCATGTGTC
1 GCACACGAGCGTGTGTCTAGGCCATGTGTC
*
20933737 GCACACGAGCGTGTGTCTAGGCCGTGTGTC
1 GCACACGAGCGTGTGTCTAGGCCATGTGTC
*
20933767 ACACACGA
1 GCACACGA
20933775 CCAGCCCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (30 bp):
GCACACGAGCGTGTGTCTAGGCCATGTGTC
Found at i:20939119 original size:5 final size:5
Alignment explanation
Indices: 20939104--20939172 Score: 57
Period size: 5 Copynumber: 13.0 Consensus size: 5
20939094 ATTGGGGTAG
* * * *
20939104 GATAT AATAT GTTAT GATAT GAGATAT GATAT GATAT GATAC GATAT GTAATCT
1 GATAT GATAT GATAT GATAT --GATAT GATAT GATAT GATAT GATAT G--ATAT
*
20939158 GATAT GGTAT GATAT
1 GATAT GATAT GATAT
20939173 AAGATATACT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
5 41 0.82
7 9 0.18
ACGTcount: A:0.38, C:0.03, G:0.20, T:0.39
Consensus pattern (5 bp):
GATAT
Found at i:20939160 original size:27 final size:27
Alignment explanation
Indices: 20939104--20939171 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
20939094 ATTGGGGTAG
* * *
20939104 GATATAATATGTTATGATATGAGATAT
1 GATATGATATGATACGATATGAGATAT
*
20939131 GATATGATATGATACGATATGTA-ATCT
1 GATATGATATGATACGATATG-AGATAT
*
20939158 GATATGGTATGATA
1 GATATGATATGATA
20939172 TAAGATATAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (27 bp):
GATATGATATGATACGATATGAGATAT
Found at i:20939178 original size:17 final size:16
Alignment explanation
Indices: 20939104--20939179 Score: 59
Period size: 17 Copynumber: 4.7 Consensus size: 16
20939094 ATTGGGGTAG
*
20939104 GATATA-ATATGTTAT
1 GATATAGATATGATAT
20939119 GATATGAGATATGATAT
1 GATAT-AGATATGATAT
*
20939136 GATAT-GATACGATAT
1 GATATAGATATGATAT
* *
20939151 G-TAATCTGATATGGTAT
1 GAT-AT-AGATATGATAT
20939168 GATATAAGATAT
1 GATAT-AGATAT
20939180 ACTCTGATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
14 1 0.02
15 17 0.35
16 1 0.02
17 29 0.59
18 1 0.02
ACGTcount: A:0.39, C:0.03, G:0.20, T:0.38
Consensus pattern (16 bp):
GATATAGATATGATAT
Found at i:20942656 original size:14 final size:15
Alignment explanation
Indices: 20942591--20942668 Score: 61
Period size: 14 Copynumber: 5.1 Consensus size: 15
20942581 AATATAGCAC
20942591 AGTTCACAAT-TCAT
1 AGTTCACAATATCAT
* * *
20942605 AGTTCGCAAATCTGCAG
1 AGTTCAC-AATAT-CAT
* *
20942622 AGCTCGCAATATCAT
1 AGTTCACAATATCAT
*
20942637 AATTCACAAT-TCAT
1 AGTTCACAATATCAT
20942651 AGTTCACATATATCAT
1 AGTTCACA-ATATCAT
20942667 AG
1 AG
20942669 GTTCGCATAA
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
14 17 0.34
15 14 0.28
16 11 0.22
17 8 0.16
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.31
Consensus pattern (15 bp):
AGTTCACAATATCAT
Found at i:20942896 original size:52 final size:51
Alignment explanation
Indices: 20942780--20943063 Score: 184
Period size: 52 Copynumber: 5.4 Consensus size: 51
20942770 AATATAGCAA
* * * *
20942780 GGTTCACACATAAGCTAGGGTTCACACTTTTGGTTAGGTTCACATATTCA-GTAG
1 GGTTCTCACATTAG-TA-GGTTCACACTTTAGG-TAGGTTCACACATT-AGGTAG
* ** *
20942834 AGTTAACACATTAGTAGGTTCACACTTTAGGTTGGATTCACACATTAGGTAG
1 GGTTCTCACATTAGTAGGTTCACACTTTAGGTAGG-TTCACACATTAGGTAG
* *** * * * *
20942886 GGTTCTCACATTGGTAGGGTTTGTACATTA-GTAGGGTTCGCACTTTAGGAAG
1 GGTTCTCACATTAGTA-GGTTCACACTTTAGGTA-GGTTCACACATTAGGTAG
* * * * * *
20942938 GGTT-TACACATTAGTAGGGTCTGCACATT-GGTAAGGTTTACACTTTAGGAAG
1 GGTTCT-CACATTAGTAGGTTC-ACACTTTAGGT-AGGTTCACACATTAGGTAG
*
20942990 GGTTCGCACATTAGTAAGGTTCACACTTTAGGTAGGGTTCACACATT-GGTAG
1 GGTTCTCACATTAGT-AGGTTCACACTTTAGGTA-GGTTCACACATTAGGTAG
*
20943042 GGTT-TACATATTAGTAGAGTTC
1 GGTTCT-CACATTAGTAG-GTTC
20943064 GCACAATGAC
Statistics
Matches: 183, Mismatches: 33, Indels: 30
0.74 0.13 0.12
Matches are distributed among these distances:
51 10 0.05
52 130 0.71
53 32 0.17
54 11 0.06
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (51 bp):
GGTTCTCACATTAGTAGGTTCACACTTTAGGTAGGTTCACACATTAGGTAG
Found at i:20942914 original size:35 final size:35
Alignment explanation
Indices: 20942830--20943068 Score: 211
Period size: 35 Copynumber: 6.9 Consensus size: 35
20942820 CACATATTCA
* * * *
20942830 GTAGAGTTAACACATTA-GTA-GGTTCACACTTTAG
1 GTAGGGTTTACACATTAGGTAGGGTTCGCACATT-G
* * * *
20942864 GTTGGATTCACACATTAGGTAGGGTTCTCACATTG
1 GTAGGGTTTACACATTAGGTAGGGTTCGCACATTG
** *
20942899 GTAGGGTTTGTACATTA-GTAGGGTTCGCACTTTAG
1 GTAGGGTTTACACATTAGGTAGGGTTCGCACATT-G
*
20942934 GAAGGGTTTACACATTA-GTAGGG-TCTGCACATTG
1 GTAGGGTTTACACATTAGGTAGGGTTC-GCACATTG
* * * *
20942968 GTAAGGTTTACACTTTAGGAAGGGTTCGCACATTA
1 GTAGGGTTTACACATTAGGTAGGGTTCGCACATTG
* * * *
20943003 GTAAGGTTCACACTTTAGGTAGGGTTCACACATTG
1 GTAGGGTTTACACATTAGGTAGGGTTCGCACATTG
* *
20943038 GTAGGGTTTACATATTA-GTAGAGTTCGCACA
1 GTAGGGTTTACACATTAGGTAGGGTTCGCACA
20943069 ATGACATGAT
Statistics
Matches: 167, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
34 56 0.34
35 99 0.59
36 12 0.07
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (35 bp):
GTAGGGTTTACACATTAGGTAGGGTTCGCACATTG
Found at i:20942924 original size:70 final size:69
Alignment explanation
Indices: 20942830--20943067 Score: 259
Period size: 70 Copynumber: 3.4 Consensus size: 69
20942820 CACATATTCA
* * * *
20942830 GTAGAGTTAACACATTAGTA-GGTTCACACTTTAGGTTGGATTCACACATTAGGTAGGGTTCTCA
1 GTAGGGTTTACACATTAGTAGGGTTCGCACTTTAGGTAGG-TTCACACATTAGGTAGGGTTCTCA
20942894 CATTG
65 CATTG
** * *
20942899 GTAGGGTTTGTACATTAGTAGGGTTCGCACTTTAGGAAGGGTTTACACATTA-GTAGGG-TCTGC
1 GTAGGGTTTACACATTAGTAGGGTTCGCACTTTAGGTA-GGTTCACACATTAGGTAGGGTTCT-C
20942962 ACATTG
64 ACATTG
* * * * * *
20942968 GTAAGGTTTACACTTTAGGAAGGGTTCGCACATTA-GTAAGGTTCACACTTTAGGTAGGGTTCAC
1 GTAGGGTTTACACATTA-GTAGGGTTCGCACTTTAGGT-AGGTTCACACATTAGGTAGGGTTCTC
20943032 ACATTG
64 ACATTG
* *
20943038 GTAGGGTTTACATATTAGTAGAGTTCGCAC
1 GTAGGGTTTACACATTAGTAGGGTTCGCAC
20943068 AATGACATGA
Statistics
Matches: 139, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
68 3 0.02
69 65 0.47
70 67 0.48
71 4 0.03
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (69 bp):
GTAGGGTTTACACATTAGTAGGGTTCGCACTTTAGGTAGGTTCACACATTAGGTAGGGTTCTCAC
ATTG
Found at i:20943058 original size:17 final size:17
Alignment explanation
Indices: 20942829--20943058 Score: 140
Period size: 17 Copynumber: 13.3 Consensus size: 17
20942819 TCACATATTC
* *
20942829 AGTAGAGTTAACACATT
1 AGTAGGGTTTACACATT
* *
20942846 AGTA-GGTTCACACTTT
1 AGTAGGGTTTACACATT
* * *
20942862 AGGTTGGATTCACACATT
1 A-GTAGGGTTTACACATT
20942880 AGGTAGGGTTCT-CACATT
1 A-GTAGGGTT-TACACATT
* **
20942898 GGTAGGGTTTGTACATT
1 AGTAGGGTTTACACATT
** *
20942915 AGTAGGGTTCGCACTTT
1 AGTAGGGTTTACACATT
*
20942932 AGGAAGGGTTTACACATT
1 A-GTAGGGTTTACACATT
* *
20942950 AGTAGGGTCTGCACATT
1 AGTAGGGTTTACACATT
* * *
20942967 GGTAAGGTTTACACTTT
1 AGTAGGGTTTACACATT
* **
20942984 AGGAAGGGTTCGCACATT
1 A-GTAGGGTTTACACATT
* * *
20943002 AGTAAGGTTCACACTTT
1 AGTAGGGTTTACACATT
*
20943019 AGGTAGGGTTCACACATT
1 A-GTAGGGTTTACACATT
* *
20943037 GGTAGGGTTTACATATT
1 AGTAGGGTTTACACATT
20943054 AGTAG
1 AGTAG
20943059 AGTTCGCACA
Statistics
Matches: 163, Mismatches: 43, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
16 11 0.07
17 89 0.55
18 63 0.39
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.33
Consensus pattern (17 bp):
AGTAGGGTTTACACATT
Found at i:20943129 original size:17 final size:17
Alignment explanation
Indices: 20943109--20943161 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
20943099 AAGTCACACA
20943109 ACATAGCTTCGCACATC
1 ACATAGCTTCGCACATC
* *
20943126 ACATAGCAGTCACACA--
1 ACATAGC-TTCGCACATC
*
20943142 ACATAGGTTCGCACATC
1 ACATAGCTTCGCACATC
20943159 ACA
1 ACA
20943162 ATAGGGTTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
15 6 0.21
16 6 0.21
17 10 0.36
18 6 0.21
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.19
Consensus pattern (17 bp):
ACATAGCTTCGCACATC
Found at i:20943137 original size:33 final size:33
Alignment explanation
Indices: 20943087--20943161 Score: 123
Period size: 33 Copynumber: 2.3 Consensus size: 33
20943077 ATAAGGTTCA
*
20943087 CACATCATATAGAAGTCACACAACATAGCTTCG
1 CACATCACATAGAAGTCACACAACATAGCTTCG
* *
20943120 CACATCACATAGCAGTCACACAACATAGGTTCG
1 CACATCACATAGAAGTCACACAACATAGCTTCG
20943153 CACATCACA
1 CACATCACA
20943162 ATAGGGTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.39, C:0.31, G:0.12, T:0.19
Consensus pattern (33 bp):
CACATCACATAGAAGTCACACAACATAGCTTCG
Found at i:20943191 original size:22 final size:22
Alignment explanation
Indices: 20943166--20943225 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
20943156 ATCACAATAG
*
20943166 GGTTCACATGAAATTATAACAA
1 GGTTCACATGACATTATAACAA
* * * *
20943188 GGTTTACATGACATTTTAGCAG
1 GGTTCACATGACATTATAACAA
20943210 GGTTCACATGACATTA
1 GGTTCACATGACATTA
20943226 CCTAGGCTTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (22 bp):
GGTTCACATGACATTATAACAA
Found at i:20945868 original size:22 final size:22
Alignment explanation
Indices: 20945843--20945885 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
20945833 TAGAGAATAC
* *
20945843 AAACGACAAATTTCATATTCGA
1 AAACCACAAATTCCATATTCGA
20945865 AAACCACAAATTCCATATTCG
1 AAACCACAAATTCCATATTCG
20945886 GCATCATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.26
Consensus pattern (22 bp):
AAACCACAAATTCCATATTCGA
Found at i:20959928 original size:23 final size:22
Alignment explanation
Indices: 20959898--20959942 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
20959888 TCACTTTGAT
* * *
20959898 TTATTTATTTATTTAGTTATTA
1 TTATTTATATAATTAATTATTA
20959920 TTATATTATATAATTAATTATTA
1 TTAT-TTATATAATTAATTATTA
20959943 AGTATTTACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
TTATTTATATAATTAATTATTA
Found at i:20960752 original size:5 final size:5
Alignment explanation
Indices: 20960744--20960789 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
20960734 ATTTTTATTT
* *
20960744 TTTTG TTTTG TTTTT TTTTG TTTTG TTTTG TTAGTTG TTTTA TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TT--TTG TTTTG TTTT
20960790 TATTGGTGCG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 31 0.86
7 5 0.14
ACGTcount: A:0.04, C:0.00, G:0.15, T:0.80
Consensus pattern (5 bp):
TTTTG
Found at i:20960761 original size:15 final size:15
Alignment explanation
Indices: 20960741--20960772 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
20960731 TTTATTTTTA
20960741 TTTTTTTGTTTTGTT
1 TTTTTTTGTTTTGTT
20960756 TTTTTTTGTTTTGTT
1 TTTTTTTGTTTTGTT
20960771 TT
1 TT
20960773 GTTAGTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (15 bp):
TTTTTTTGTTTTGTT
Found at i:20960767 original size:20 final size:19
Alignment explanation
Indices: 20960730--20960775 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
20960720 CTAGTTGTAC
*
20960730 TTTTATTTTTATTTTTTTG
1 TTTTGTTTTTATTTTTTTG
*
20960749 TTTTGTTTTTTTTTGTTTTG
1 TTTTGTTTTTATTT-TTTTG
20960769 TTTTGTT
1 TTTTGTT
20960776 AGTTGTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.04, C:0.00, G:0.11, T:0.85
Consensus pattern (19 bp):
TTTTGTTTTTATTTTTTTG
Found at i:20978343 original size:20 final size:21
Alignment explanation
Indices: 20978320--20978358 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
20978310 AATAAATAAA
20978320 AAGATAAAAGAAAA-AAAAGC
1 AAGATAAAAGAAAATAAAAGC
*
20978340 AAGATAAAGGAAAATAAAA
1 AAGATAAAAGAAAATAAAA
20978359 TATAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.74, C:0.03, G:0.15, T:0.08
Consensus pattern (21 bp):
AAGATAAAAGAAAATAAAAGC
Found at i:20978421 original size:4 final size:4
Alignment explanation
Indices: 20978400--20978437 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
20978390 GGTAAAAACT
* *
20978400 AATA AATA AGTA AGTA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
20978438 GGACTCAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:20980003 original size:44 final size:44
Alignment explanation
Indices: 20979790--20980821 Score: 626
Period size: 44 Copynumber: 22.8 Consensus size: 44
20979780 TGCATATACC
* * * * *
20979790 ACTTCAAGGAGATAAGATTCGTAGCTTCAATCTGCTCCGCTGCG
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * * ** *
20979834 ACTTTAGGGAGATGAGATTAGTGATTTTTAACCTGCTCCACTGCA
1 ACTTCAGGGAGATAAGATTTGT-AGCTTTAATCTGCTCCACTGCA
* * * * *
20979879 ACTTCAGGGAGATAAGGTTTGTAGTTTTGATCTGCTCTACTACA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * * * ** * *
20979923 GCTTAAAGAAGATGAGATTAGTGATTTTTAACCTGCTACACTGCA
1 ACTTCAGGGAGATAAGATTTGT-AGCTTTAATCTGCTCCACTGCA
* *
20979968 ACTTCAGGGAGATAAGGTTTGTAGCTTTAATCTGCTCTACTGCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * * *
20980012 GCTTCAGAGAGACAAGATTTGATA-TTTTCAATCTACTCTACTGCA
1 ACTTCAGGGAGATAAGATTTG-TAGCTTT-AATCTGCTCCACTGCA
* * *
20980057 ACTTCAGGGAGATAAGATTTGTAATCTTTAACCTGCTCCGCTGCA
1 ACTTCAGGGAGATAAGATTTGT-AGCTTTAATCTGCTCCACTGCA
* * * *
20980102 ACTTCAGGGAGATAAGGTTTGTGGCTTTAATCTACTCCACTGCG
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * *
20980146 ACTTCAGAGAGATAAGATTTGTAACTTTGATCTACTCCAGTGCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * * *
20980190 ACTTCAGGGAGATAAGATCTATAACTTTAACCTACTCTACTGCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * *
20980234 ACTTCTGGGAGATAATATTTGTAATTTGTAGCTTTAATCTGTTCCACTACA
1 ACTTCAGGGAGAT-A-A---G--ATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * ** * * * * **
20980285 AATTTAAGGATATAAGATTCACTATCTTCAGTCTGTTCCACTATA
1 ACTTCAGGGAGATAAGATT-TGTAGCTTTAATCTGCTCCACTGCA
* * * * * * *
20980330 ATTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTCCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * *
20980374 ACTTCAGGGAGATAAGGTTTGTTATCTTCAGTCTGCTCCACTACA
1 ACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCA
* ** * * *
20980419 ACTTCAGGGAGATAAGACTTAAAGTTTTAATCTACTCTACTGCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * * ** * *
20980463 ACTTCAGAGAGGTAATATTTTTTATCTTCGATCTACTCCACTGTA
1 ACTTCAGGGAGATAAGA-TTTGTAGCTTTAATCTGCTCCACTGCA
** * * * *
20980508 ACTTCAATGAGATAAGATCTATAACTTCAATCTGCTCCACTGCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * ** *
20980552 ACTTCAGGGAGATCCGATTTGTAATTTGTAGCCTTAATCTATTCCACTGTA
1 ACTTCAGGGAGAT---A--AG--ATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * * * *
20980603 AATTTAGGGAAATAAGATTCGCTATCTTTAGTCTACTCCACTGCA
1 ACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCA
* * *
20980648 ACTTCAGGGAGATGAGACTTGTAATTTATAGCTTTAATCTGTTCCACTACA
1 ACTTCAGGGAGAT-A-A---G--ATTTGTAGCTTTAATCTGCTCCACTGCA
* * * * * * *
20980699 ACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGTTCCATTGCA
1 ACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCA
* * *
20980744 ACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* * *
20980788 ACTTCAAGGAGATAAGGTTTATAGCTTTAATCTG
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTG
20980822 TTCTAAGATT
Statistics
Matches: 748, Mismatches: 208, Indels: 64
0.73 0.20 0.06
Matches are distributed among these distances:
44 340 0.45
45 299 0.40
46 8 0.01
47 2 0.00
48 1 0.00
49 4 0.01
50 3 0.00
51 88 0.12
52 3 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
Found at i:20980075 original size:134 final size:130
Alignment explanation
Indices: 20979790--20980821 Score: 526
Period size: 134 Copynumber: 7.6 Consensus size: 130
20979780 TGCATATACC
* * * * * * * * * * *
20979790 ACTTCAAGGAGATAAGATTCGTAGCTTCAATCTGCTCCGCTGCGACTTTAGGGAGATGAGATTAG
1 ACTTCAGGGAGATAAGATTAGTATCTTTAACCTGCT-CACTGCAACTTCAGGGAGATAAGGTTTG
** * * * * *
20979855 TGATTTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTAGTTTTGATCTGCTCTACT
65 T-AGCTTTAATCTGCTCCACTGCAGCTTCAGAGAGATAAGATTTGTA-TTTTGATCTACTCTACT
*
20979920 ACA
128 GCA
* * * * * *
20979923 GCTTAAAGAAGATGAGATTAGTGATTTTTAACCTGCTACACTGCAACTTCAGGGAGATAAGGTTT
1 ACTTCAGGGAGATAAGATTAGT-ATCTTTAACCTGCT-CACTGCAACTTCAGGGAGATAAGGTTT
* * *
20979988 GTAGCTTTAATCTGCTCTACTGCAGCTTCAGAGAGACAAGATTTGATATTTTCAATCTACTCTAC
64 GTAGCTTTAATCTGCTCCACTGCAGCTTCAGAGAGATAAGATTTG-TATTTT-GATCTACTCTAC
20980053 TGCA
127 TGCA
* *
20980057 ACTTCAGGGAGATAAGATTTGTAATCTTTAACCTGCTCCGCTGCAACTTCAGGGAGATAAGGTTT
1 ACTTCAGGGAGATAAGATTAGT-ATCTTTAACCTGCT-CACTGCAACTTCAGGGAGATAAGGTTT
* * * * *
20980122 GTGGCTTTAATCTACTCCACTGC-GACTTCAGAGAGATAAGATTTGTAACTTTGATCTACTCCAG
64 GTAGCTTTAATCTGCTCCACTGCAG-CTTCAGAGAGATAAGATTTGT-ATTTTGATCTACTCTAC
20980186 TGCA
127 TGCA
* * *
20980190 ACTTCAGGGAGATAAGATCTA-TAACTTTAACCTACTCTACTGCAACTTCTGGGAGATAATATTT
1 ACTTCAGGGAGATAAGAT-TAGTATCTTTAACCTGCTC-ACTGCAACTTCAGGGAGAT-A-A---
* * * ** * * ** * *
20980254 GTAATTTGTAGCTTTAATCTGTTCCACTACAAATTTA-AGGATATAAGATTCACTATCTTCAGTC
59 G--GTTTGTAGCTTTAATCTGCTCCACTGCAGCTTCAGA-GAGATAAGATT-TGTATTTTGA-TC
** * **
20980318 TGTTCCACTATA
119 TACTCTACTGCA
* * * * *
20980330 ATTTCAGGGAGATAAGACTT-GTAACTTCAACCTACTCCACTCCAACTTCAGGGAGATAAGGTTT
1 ACTTCAGGGAGATAAGA-TTAGTATCTTTAACCTGCT-CACTGCAACTTCAGGGAGATAAGGTTT
* * * * * * * ** *
20980394 GTTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTAAAGTTTTAATCTACTCTAC
64 G-TAGCTTTAATCTGCTCCACTGCAGCTTCAGAGAGATAAGATTTGTA-TTTTGATCTACTCTAC
20980459 TGCA
127 TGCA
* * * ** ** * * * ** * *
20980463 ACTTCAGAGAGGTAATATTTTTTATCTTCGATCTACTCCACTGTAACTTCAATGAGATAAGATCT
1 ACTTCAGGGAGATAAGA-TTAGTATCTTTAACCTGCT-CACTGCAACTTCAGGGAGATAAGGTTT
* * * * * **
20980528 ATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATCCGATTTGTAATTTGTAGCCTTAATCTA
64 GTAGCTTTAATCTGCTCCACTGCAGCTTCAGAGAGATAAGATTTGT-ATTT-T-G-----ATCTA
* * *
20980593 TTCCACTGTA
121 CTCTACTGCA
* * * * ** *
20980603 AATTTAGGGAAATAAGATTCGCTATCTTTAGTCTACTCCACTGCAACTTCAGGGAGATGAGACTT
1 ACTTCAGGGAGATAAGATTAG-TATCTTTAACCTGCT-CACTGCAACTTCAGGGAGAT-A-A---
* * * * * * * * * *
20980668 GTAATTTATAGCTTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCT
59 G--GTTTGTAGCTTTAATCTGCTCCACTGCAGCTTCAGAGAGATAAGATTTG-TATTTTGA-TCT
** * *
20980733 GTTCCATTGCA
120 ACTCTACTGCA
* *
20980744 ACTTCAGGGAGATAAGACTT-GTAACTTTAACCTGCTCCACTGCAACTTCAAGGAGATAAGGTTT
1 ACTTCAGGGAGATAAGA-TTAGTATCTTTAACCTGCT-CACTGCAACTTCAGGGAGATAAGGTTT
*
20980808 ATAGCTTTAATCTG
64 GTAGCTTTAATCTG
20980822 TTCTAAGATT
Statistics
Matches: 697, Mismatches: 158, Indels: 88
0.74 0.17 0.09
Matches are distributed among these distances:
131 1 0.00
132 29 0.04
133 177 0.25
134 220 0.32
135 2 0.00
137 1 0.00
138 3 0.00
139 43 0.06
140 143 0.21
141 29 0.04
142 3 0.00
145 1 0.00
146 1 0.00
147 43 0.06
148 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (130 bp):
ACTTCAGGGAGATAAGATTAGTATCTTTAACCTGCTCACTGCAACTTCAGGGAGATAAGGTTTGT
AGCTTTAATCTGCTCCACTGCAGCTTCAGAGAGATAAGATTTGTATTTTGATCTACTCTACTGCA
Done.