Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 73 of 316
Found at i:21636813 original size:16 final size:16
Alignment explanation
Indices: 21636794--21636824 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21636784 CTTCTTCACT
21636794 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
21636810 TACTTACTTACTTAA
1 TACTCACTTACTTAA
21636825 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:21636830 original size:20 final size:20
Alignment explanation
Indices: 21636791--21636830 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
21636781 AAACTTCTTC
* *
21636791 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
21636811 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
21636831 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:21637206 original size:55 final size:53
Alignment explanation
Indices: 21637068--21637270 Score: 214
Period size: 55 Copynumber: 3.8 Consensus size: 53
21637058 TTTGAAACCT
* *
21637068 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
* * *
21637121 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTC
* *** *
21637176 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTC
* *
21637230 ACCAATTGCCATGCCTT-AGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGA-CATGGTCTTACATGGGATCCTT
21637271 AAACCCTAAT
Statistics
Matches: 127, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 9 0.07
55 71 0.56
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
Found at i:21644628 original size:24 final size:24
Alignment explanation
Indices: 21644569--21644629 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
21644559 ACGTACCGGT
21644569 ACTTATAGAATACGCCACAAAGGC
1 ACTTATAGAATACGCCACAAAGGC
* * *
21644593 ATTTACACAATACGCCACAAAGGC
1 ACTTATAGAATACGCCACAAAGGC
21644617 ACTTATAGAATAC
1 ACTTATAGAATAC
21644630 CCTGCCTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.43, C:0.25, G:0.13, T:0.20
Consensus pattern (24 bp):
ACTTATAGAATACGCCACAAAGGC
Found at i:21645352 original size:30 final size:30
Alignment explanation
Indices: 21645287--21645370 Score: 98
Period size: 30 Copynumber: 2.8 Consensus size: 30
21645277 AGCACGACAT
21645287 TCATCGGCTTCTGTCAGACACAATCAGTAG
1 TCATCGGCTTCTGTCAGACACAATCAGTAG
* *
21645317 CCATCGGCTTCTGTCAGACGCAATC-GATAG
1 TCATCGGCTTCTGTCAGACACAATCAG-TAG
** * *
21645347 TCATCGATTTTTGTCACACACAAT
1 TCATCGGCTTCTGTCAGACACAAT
21645371 TGGTAGTTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
29 1 0.02
30 44 0.98
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (30 bp):
TCATCGGCTTCTGTCAGACACAATCAGTAG
Found at i:21651018 original size:47 final size:48
Alignment explanation
Indices: 21650964--21651058 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 48
21650954 AACATAAAAG
21650964 TTTCAAACATTCCAAGTTGAGTATTTAATCAAGCAAA-ATAGGTGTCT
1 TTTCAAACATTCCAAGTTGAGTATTTAATCAAGCAAACATAGGTGTCT
*
21651011 TTTCAAACATTCCAAGTTGAGTATTTAATCATGCAAACATAGGTGTCT
1 TTTCAAACATTCCAAGTTGAGTATTTAATCAAGCAAACATAGGTGTCT
21651059 CTCCGCATCT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 36 0.78
48 10 0.22
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (48 bp):
TTTCAAACATTCCAAGTTGAGTATTTAATCAAGCAAACATAGGTGTCT
Found at i:21658387 original size:47 final size:48
Alignment explanation
Indices: 21658333--21658427 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 48
21658323 AACATAAAAG
21658333 TTTCAAACATTCCAAGTTGAGTATTTAATCAAGCAAA-ATAGGTGTCT
1 TTTCAAACATTCCAAGTTGAGTATTTAATCAAGCAAACATAGGTGTCT
*
21658380 TTTCAAACATTCCAAGTTGAGTATTTAATCATGCAAACATAGGTGTCT
1 TTTCAAACATTCCAAGTTGAGTATTTAATCAAGCAAACATAGGTGTCT
21658428 CTCCGCATCT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 36 0.78
48 10 0.22
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (48 bp):
TTTCAAACATTCCAAGTTGAGTATTTAATCAAGCAAACATAGGTGTCT
Found at i:21672344 original size:13 final size:13
Alignment explanation
Indices: 21672315--21672357 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
21672305 CATGTCATAG
* *
21672315 GATTTTGAGAAGA
1 GATTTTGAGATGT
21672328 GATTTTGAGATGT
1 GATTTTGAGATGT
*
21672341 GATTTGGAGATGCT
1 GATTTTGAGATG-T
21672355 GAT
1 GAT
21672358 GTTTATATCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 22 0.85
14 4 0.15
ACGTcount: A:0.28, C:0.02, G:0.33, T:0.37
Consensus pattern (13 bp):
GATTTTGAGATGT
Found at i:21672437 original size:29 final size:29
Alignment explanation
Indices: 21672397--21672500 Score: 123
Period size: 28 Copynumber: 3.8 Consensus size: 29
21672387 GCACTCTGTG
*
21672397 TTATTCTGGTGTGTTTTGGATGGATTATA
1 TTATTCTGGTGTGTTTTGGATGGATTACA
*
21672426 TTATTCTGGTGTGTTTGGGA-GGATTACA
1 TTATTCTGGTGTGTTTTGGATGGATTACA
* *
21672454 TTATACTGGTGTGTTTTGGTTGG---ACA
1 TTATTCTGGTGTGTTTTGGATGGATTACA
21672480 TT-TT-TGGTGTG-TTTGGATGGA
1 TTATTCTGGTGTGTTTTGGATGGA
21672501 ATCCGTGTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
23 8 0.12
24 7 0.11
25 1 0.02
26 5 0.08
28 24 0.36
29 21 0.32
ACGTcount: A:0.15, C:0.05, G:0.32, T:0.48
Consensus pattern (29 bp):
TTATTCTGGTGTGTTTTGGATGGATTACA
Found at i:21674315 original size:29 final size:29
Alignment explanation
Indices: 21674259--21674323 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
21674249 ATTTGAGGGG
** *
21674259 ATTTGGCGATTTTATTGCACTTATTCATT
1 ATTTGGCGATTTTATCACACTTAGTCATT
* *
21674288 ATTTGGCGGTTTTATCACATTTAGTCATT
1 ATTTGGCGATTTTATCACACTTAGTCATT
*
21674317 TTTTGGC
1 ATTTGGC
21674324 ATAATTTCTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.18, C:0.14, G:0.17, T:0.51
Consensus pattern (29 bp):
ATTTGGCGATTTTATCACACTTAGTCATT
Found at i:21684031 original size:19 final size:19
Alignment explanation
Indices: 21683986--21684023 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
21683976 CACGGGAAAT
21683986 CAACACGGCCTGGACTTCC
1 CAACACGGCCTGGACTTCC
21684005 CAACACGGCCTGGACTTCC
1 CAACACGGCCTGGACTTCC
21684024 TCACACGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.42, G:0.21, T:0.16
Consensus pattern (19 bp):
CAACACGGCCTGGACTTCC
Found at i:21696598 original size:29 final size:26
Alignment explanation
Indices: 21696558--21696629 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
21696548 TTATTTTCAC
21696558 TTTTATCTTTATTTATCTTCTTTAAGTATT-
1 TTTTAT-TTTATTT-TC--CTTTAA-TATTA
21696588 TTTTATTTTATTTTCCTTTAATATTA
1 TTTTATTTTATTTTCCTTTAATATTA
21696614 TTTTAATTTTAGTTTT
1 TTTT-ATTTTA-TTTT
21696630 TATAATTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
25 4 0.10
26 10 0.26
27 6 0.15
28 6 0.15
29 7 0.18
30 6 0.15
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (26 bp):
TTTTATTTTATTTTCCTTTAATATTA
Found at i:21706735 original size:55 final size:53
Alignment explanation
Indices: 21706642--21706770 Score: 134
Period size: 55 Copynumber: 2.4 Consensus size: 53
21706632 TGCGACATGG
* * * * *
21706642 CCGTGGGCAAACCTGCCAAAACAACACGTGCGTTCGACAGGCCCATGCCTCGA-AA
1 CCGTGGGCGAACCTGTC-AAACAACACGGGCGTGCGACACGCCCATGCC-C-ACAA
* * *
21706697 CCGTGGGCGAACCTGTCAAACTAGCACGGGCGTGCGACACGCCCTTGCCCATCAT
1 CCGTGGGCGAACCTGTCAAAC-AACACGGGCGTGCGACACGCCCATGCCCA-CAA
21706752 CCGTGGGCGAACCTGTCAA
1 CCGTGGGCGAACCTGTCAA
21706771 GTTAACACGG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
53 1 0.02
54 5 0.08
55 57 0.90
ACGTcount: A:0.24, C:0.35, G:0.26, T:0.15
Consensus pattern (53 bp):
CCGTGGGCGAACCTGTCAAACAACACGGGCGTGCGACACGCCCATGCCCACAA
Found at i:21711584 original size:13 final size:13
Alignment explanation
Indices: 21711566--21711590 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21711556 GGGCCGTGTG
21711566 AGGGACACGGGCC
1 AGGGACACGGGCC
21711579 AGGGACACGGGC
1 AGGGACACGGGC
21711591 GTGTGCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:21715425 original size:11 final size:11
Alignment explanation
Indices: 21715405--21715438 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
21715395 GATGAAAAAG
*
21715405 GAAAAGAGAAA
1 GAAAAAAGAAA
21715416 GAAAAAAGAAA
1 GAAAAAAGAAA
21715427 GAAAAAAGAAA
1 GAAAAAAGAAA
21715438 G
1 G
21715439 GCTCTCATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
GAAAAAAGAAA
Found at i:21716746 original size:40 final size:40
Alignment explanation
Indices: 21716691--21716857 Score: 248
Period size: 40 Copynumber: 4.2 Consensus size: 40
21716681 TATTTGGATG
21716691 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
21716731 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
21716771 ATATCTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
21716811 ATATCCGAGCTATGTCCCAAAGGCA-TTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
21716850 ATATCCGG
1 ATATCCGG
21716858 TTAAATCTCG
Statistics
Matches: 115, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 2 0.02
39 16 0.14
40 97 0.84
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:21725152 original size:37 final size:37
Alignment explanation
Indices: 21725102--21725176 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
21725092 ATTCAGAGAT
*
21725102 GTTCATCGTGTTCATCTTCAGTCCTCTAATACACTAG
1 GTTCATCGTGTTCATCTTCAGTCCTCGAATACACTAG
21725139 GTTCATCGTGTTCATCTTCAGTCCTCGAATACACTAG
1 GTTCATCGTGTTCATCTTCAGTCCTCGAATACACTAG
21725176 G
1 G
21725177 ATGTCATCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (37 bp):
GTTCATCGTGTTCATCTTCAGTCCTCGAATACACTAG
Found at i:21731518 original size:5 final size:5
Alignment explanation
Indices: 21731508--21731550 Score: 59
Period size: 5 Copynumber: 8.0 Consensus size: 5
21731498 CGAACATCTA
21731508 TTTAT TTTAT TTTAT TTTAT TTTACT ATTTAT TATTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTA-T -TTTAT T-TTAT TTTAT
21731551 AATCTATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 24 0.69
6 7 0.20
7 4 0.11
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:21731539 original size:22 final size:21
Alignment explanation
Indices: 21731513--21731563 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
21731503 ATCTATTTAT
**
21731513 TTTATTTTATTTTATTTTACTA
1 TTTATTTTATTTTATAAT-CTA
21731535 TTTATTATTATTTTATAATCTA
1 TTTATT-TTATTTTATAATCTA
21731557 TTTATTT
1 TTTATTT
21731564 ATTCATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 15 0.58
23 10 0.38
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTATTTTATTTTATAATCTA
Found at i:21731558 original size:18 final size:17
Alignment explanation
Indices: 21731503--21731563 Score: 51
Period size: 18 Copynumber: 3.8 Consensus size: 17
21731493 TTCATCGAAC
21731503 ATCTA-TTTATTTTA-T
1 ATCTATTTTATTTTACT
*
21731518 -TTTATTTTATTTTACT
1 ATCTATTTTATTTTACT
*
21731534 ATTTATTATTATTTTA-T
1 ATCTATT-TTATTTTACT
21731551 AATCTA-TTTATTT
1 -ATCTATTTTATTT
21731564 ATTCATTCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
14 3 0.08
15 9 0.23
16 7 0.18
17 8 0.21
18 12 0.31
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (17 bp):
ATCTATTTTATTTTACT
Found at i:21731641 original size:63 final size:63
Alignment explanation
Indices: 21731534--21731663 Score: 172
Period size: 63 Copynumber: 2.1 Consensus size: 63
21731524 TTATTTTACT
*
21731534 ATTTATTATTATTTTATAATCTATTTATTTATTCATTCATTCTTTTACATTTTAAATACTTAA
1 ATTTAATATTATTTTATAATCTATTTATTTATTCATTCATTCTTTTACATTTTAAATACTTAA
* * * ** * *
21731597 ATTTAATATTATTTGTTTCATCTATTTATTTATTTATT-ATTCTTTTATTTTTTTAATATTTAA
1 ATTTAATATTATTT-TATAATCTATTTATTTATTCATTCATTCTTTTACATTTTAAATACTTAA
21731660 ATTT
1 ATTT
21731664 GATACTACTT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
63 38 0.66
64 20 0.34
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (63 bp):
ATTTAATATTATTTTATAATCTATTTATTTATTCATTCATTCTTTTACATTTTAAATACTTAA
Found at i:21736217 original size:12 final size:12
Alignment explanation
Indices: 21736200--21736224 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21736190 ACCAATACCG
21736200 ATTGAATCAACC
1 ATTGAATCAACC
21736212 ATTGAATCAACC
1 ATTGAATCAACC
21736224 A
1 A
21736225 AGTCGGTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (12 bp):
ATTGAATCAACC
Found at i:21742834 original size:24 final size:24
Alignment explanation
Indices: 21742802--21742849 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
21742792 GGGAAAGGTT
21742802 CTCCACGACTGTCATTTCTTGATC
1 CTCCACGACTGTCATTTCTTGATC
21742826 CTCCACGACTGTCATTTCTTGATC
1 CTCCACGACTGTCATTTCTTGATC
21742850 GACCATGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.33, G:0.12, T:0.38
Consensus pattern (24 bp):
CTCCACGACTGTCATTTCTTGATC
Found at i:21749863 original size:15 final size:15
Alignment explanation
Indices: 21749806--21749863 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
21749796 GAGATGACAT
*
21749806 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* * *
21749821 GAAGTCCAGGATAAT
1 GAAATCCAAGATAAA
* *
21749836 GAAATTCATGATAAA
1 GAAATCCAAGATAAA
21749851 GAAATCCAAGATA
1 GAAATCCAAGATA
21749864 CAATATCACA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.17
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:21751942 original size:40 final size:40
Alignment explanation
Indices: 21751912--21752081 Score: 236
Period size: 40 Copynumber: 4.2 Consensus size: 40
21751902 GCTACTCGTT
* *
21751912 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTTGGGACTTAACCCGGATT-TAGTAACTCGCA
21751952 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
*
21751992 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
* ** **
21752032 CAAATGCC-TTCGGATCTTAGTCCGGATTTAGTAACTCATA
1 CAAATGCCTTTGGGA-CTTAACCCGGATTTAGTAACTCGCA
21752072 CAAATGCCTT
1 CAAATGCCTT
21752082 CGGATCTTAG
Statistics
Matches: 118, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 4 0.03
40 111 0.94
41 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:21752026 original size:80 final size:80
Alignment explanation
Indices: 21751912--21752137 Score: 262
Period size: 80 Copynumber: 2.8 Consensus size: 80
21751902 GCTACTCGTT
* * *
21751912 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCG
*
21751976 GATTTAGTAACTCGCA
65 GATTTAGTAACTCACA
* * *
21751992 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCC-TTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTTGGGA-CTTAGCCCG
*
21752056 GATTTAGTAACTCATA
65 GATTTAGTAACTCACA
* * * * * *
21752072 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCACAAATGCCTTTGGGACTTAGCCC
21752135 GGA
64 GGA
21752138 CATCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
79 8 0.06
80 100 0.81
81 16 0.13
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGG
ATTTAGTAACTCACA
Found at i:21752082 original size:40 final size:39
Alignment explanation
Indices: 21751912--21752137 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 39
21751902 GCTACTCGTT
* * *
21751912 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCC-TTCGGACTTAACCCGGATT-TAGTAACTCGCA
*
21751952 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCC-TTCGGACTTAACCCGGATTTAGTAACTCGCA
21751992 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
** **
21752032 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCATA
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
21752072 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
21752113 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAACCCGGA
21752138 CATCATTCAA
Statistics
Matches: 167, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 5 0.03
40 149 0.89
41 13 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:21756774 original size:47 final size:47
Alignment explanation
Indices: 21756721--21757157 Score: 667
Period size: 47 Copynumber: 9.2 Consensus size: 47
21756711 AATTCTAAAT
21756721 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
21756768 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
21756815 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
21756863 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
21756912 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
21756959 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
21757008 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
21757055 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
21757102 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
21757149 TGTGATAAG
1 TGTGATAAG
21757158 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 28, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 223 0.62
48 45 0.13
49 89 0.25
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:21756968 original size:96 final size:94
Alignment explanation
Indices: 21756721--21757157 Score: 667
Period size: 96 Copynumber: 4.6 Consensus size: 94
21756711 AATTCTAAAT
*
21756721 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
21756786 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
*
21756815 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
21756880 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTG--TATATA
* * * *
21756912 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
21756977 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* ** *
21757008 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
21757073 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
21757102 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
21757158 TCCCGAAGGG
Statistics
Matches: 318, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 55 0.17
95 82 0.26
96 171 0.54
97 10 0.03
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (94 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:21757063 original size:143 final size:142
Alignment explanation
Indices: 21756721--21757157 Score: 700
Period size: 143 Copynumber: 3.1 Consensus size: 142
21756711 AATTCTAAAT
21756721 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
21756786 CCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAGGGCCTAATGGCCGATGTGATGAATGTG
21756851 AAAGTG-TATATA
130 AAAGTGATATATA
21756863 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAAT
* * * *
21756928 GGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
64 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGT
21756993 GAAAGTGTATATATA
129 GAAAGTG-ATATATA
* **
21757008 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
* * * * *
21757073 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
21757138 AAGTGCATA-A-A
131 AAGTG-ATATATA
21757149 TGTGATAAG
1 TGTGATAAG
21757158 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 17, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
141 10 0.04
142 42 0.15
143 121 0.44
144 55 0.20
145 46 0.17
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (142 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATA
Found at i:21757331 original size:37 final size:37
Alignment explanation
Indices: 21757275--21757353 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
21757265 TCGAGCTCTA
* * *
21757275 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
21757312 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21757349 AAGAC
1 AAGAC
21757354 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21759264 original size:43 final size:43
Alignment explanation
Indices: 21759216--21759403 Score: 331
Period size: 43 Copynumber: 4.4 Consensus size: 43
21759206 TTGGTTTTCA
*
21759216 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
*
21759259 GCACTAAGTGTGCGGGCAATCAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
21759302 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
* * *
21759345 GCACTAAGTGTGCGGACAATAAGTATTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
21759388 GCACTAAGTGTGCGGG
1 GCACTAAGTGTGCGGG
21759404 ATTGAAATGC
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 138 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
Found at i:21759419 original size:29 final size:29
Alignment explanation
Indices: 21759386--21759459 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
21759376 GTTGTGAGAT
* *
21759386 TGGCACTAAGTGTGCGGGATTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
21759415 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
21759444 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
21759460 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:21759795 original size:40 final size:40
Alignment explanation
Indices: 21759751--21760018 Score: 242
Period size: 40 Copynumber: 6.7 Consensus size: 40
21759741 CATTTGAATG
*
21759751 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGA-T
* * * *
21759791 ATATCCGGGCTAAGACCCGAAGGC-ATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGC-TAGTGAT
* *
21759831 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAG-TGAT
* * * *
21759871 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGA-T
* * * *
21759911 AAATCCGGGCTAAATTCCGAAGAGC-ATTCGTGCTAGTGAG
1 ATATCCGGGCTAAGTCCCGAAG-GCAATTCGTGCTAGTGAT
* * * * *
21759951 GTATCCGGACTAAGTTCCGAAGAGC-ATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAG-GCAATTCGTGCTAGTGAT
*
21759991 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
21760019 CATGCTGGTG
Statistics
Matches: 194, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.05
40 162 0.84
41 22 0.11
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGAT
Found at i:21759964 original size:120 final size:120
Alignment explanation
Indices: 21759751--21760018 Score: 276
Period size: 120 Copynumber: 2.2 Consensus size: 120
21759741 CATTTGAATG
* * *
21759751 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCA
* * * * *
21759816 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG-GCAATT-GTGCAAGTTGAT
66 TTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGC-ATTCGTGC-AGGTGAT
* * * *
21759871 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACTAAATCCGGGCTAA-ATTCCGAAGA
1 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCGAGTGACTAAATCCGGGCTAAGA-CCCGAAG-
* * ** * *
21759934 GCATTCGTGC-TAGTGAGGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTT
63 GCATTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
*
21759991 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
21760019 CATGCTGGTG
Statistics
Matches: 121, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
119 4 0.03
120 98 0.81
121 17 0.14
122 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
Found at i:21760025 original size:40 final size:40
Alignment explanation
Indices: 21759952--21760028 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
21759942 GCTAGTGAGG
* * *
21759952 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
* *
21759992 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTG
21760029 ACATGTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
Found at i:21763406 original size:47 final size:47
Alignment explanation
Indices: 21763353--21763789 Score: 660
Period size: 47 Copynumber: 9.2 Consensus size: 47
21763343 AATTCTAAAT
21763353 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
21763400 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
21763447 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
21763495 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
21763544 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
21763591 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
21763640 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
21763687 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
21763734 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
21763780 TTGTGATAAG
1 -TGTGATAAG
21763790 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 27, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 222 0.62
48 45 0.13
49 89 0.25
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:21763600 original size:96 final size:94
Alignment explanation
Indices: 21763353--21763789 Score: 660
Period size: 96 Copynumber: 4.6 Consensus size: 94
21763343 AATTCTAAAT
*
21763353 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
21763418 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
*
21763447 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
21763512 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTG--TATATA
* * * *
21763544 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
21763609 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* ** *
21763640 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
21763705 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
21763734 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-ATTGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-TGTGATAAG
21763790 TCCCGAAGGG
Statistics
Matches: 318, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
94 55 0.17
95 82 0.26
96 171 0.54
97 10 0.03
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (94 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:21763695 original size:143 final size:142
Alignment explanation
Indices: 21763353--21763789 Score: 700
Period size: 143 Copynumber: 3.1 Consensus size: 142
21763343 AATTCTAAAT
21763353 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
21763418 CCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAGGGCCTAATGGCCGATGTGATGAATGTG
21763483 AAAGTG-TATATA
130 AAAGTGATATATA
21763495 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAAT
* * * *
21763560 GGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
64 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGT
21763625 GAAAGTGTATATATA
129 GAAAGTG-ATATATA
* **
21763640 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
* * * * *
21763705 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
21763770 AAGTGCATA-AT-
131 AAGTG-ATATATA
21763781 TGTGATAAG
1 TGTGATAAG
21763790 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 17, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
141 9 0.03
142 43 0.16
143 121 0.44
144 55 0.20
145 46 0.17
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (142 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATA
Found at i:21763963 original size:37 final size:37
Alignment explanation
Indices: 21763907--21763985 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
21763897 TCGAGCTCTA
* * *
21763907 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
21763944 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21763981 AAGAC
1 AAGAC
21763986 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21770847 original size:40 final size:40
Alignment explanation
Indices: 21770817--21771042 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
21770807 GCTACTCGTT
* *
21770817 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
21770857 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
21770897 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
21770937 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAATTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
21770977 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
21771018 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
21771043 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:21791585 original size:45 final size:45
Alignment explanation
Indices: 21791469--21792474 Score: 468
Period size: 45 Copynumber: 21.6 Consensus size: 45
21791459 AATTAAAAAT
* * * *
21791469 AAATCTTATCGCCCTGAAGTTGTATTGGAGCAGTTTGAAAATAAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* *
21791514 AAA-CCTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAAATAAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * *
21791558 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * * *
21791603 GAATCTTATTTCCCTTAAGTTACAGTGGAAG-AAATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGG-AGCAGATT---G--A-AAATAAC
* * ***
21791654 AAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTG-AAGCCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * **
21791698 AAATCTTACCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * **
21791743 GAATCTTATCTCCTTGAAGTTACAGTGGAGTAGATTTAAAATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * *
21791788 GAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACGAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA---A--A-TAAC
* * * *
21791839 AAATCTTCTCTCTCTGAAGTTGCAGTAGAGCAGATT-AAAGATACC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATAAC
* * * * * *
21791884 TAATCTTATTTCCCTAAAGTTGTAGTGGAACAGATT-AAAGCTACAAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA---ATAA-C
* * * *
21791932 TACTAATCTTATCTCCCTGAAGCTGCAGTGGAGCATATTGAAGATAGC
1 -A--AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * * * * *
21791980 AAACCTTATCTCCTTGGATTTGGAGTGGAGAAAATTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * **
21792025 AAATCTTATTTCCCTGAAATTGCAGTGGAGCAGATT-AAGCT-AC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * *
21792068 GAATCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTG-AAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * *
21792112 AAATCTTATCTCCCTAAAGTTGTAGTGGAGAAGATTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
* * * * * * * *
21792157 GAATCTTATGTCCCTGAAATTACATTGGAACAGATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AAATAAC
* * * ** * *
21792208 AAATCTTATTTCCCCGAAATTGCAGTGGAATAGATTAAAGCTGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA----AA-TAAC
* * * *
21792258 AAATCTTATCTTCCTGAAGTTGTAGTGGAGCAAATTGAAGATAGA-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATA-AC
* * * * * *
21792303 AAATCTTATTTCTCTGAAATTGCAGTGGAACAGATTAAAGCTACAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AAATAAC
* * * * * * * *
21792354 AAATCTTATTTCCCTAAAATTGTAGTGGAACAGAATAAGGCTACAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-AT--TG--A-AAATAAC
* ***
21792405 AAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTG-AAGCGAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
*
21792449 AATTCTTATAC-CCCTGAAGTTGCAGT
1 AAATCTTAT-CTCCCTGAAGTTGCAGT
21792475 AGGTTAGAAT
Statistics
Matches: 740, Mismatches: 172, Indels: 99
0.73 0.17 0.10
Matches are distributed among these distances:
43 33 0.04
44 145 0.20
45 295 0.40
46 7 0.01
47 4 0.01
48 8 0.01
49 3 0.00
50 45 0.06
51 196 0.26
52 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (45 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
Found at i:21791668 original size:96 final size:96
Alignment explanation
Indices: 21791469--21792474 Score: 613
Period size: 96 Copynumber: 10.7 Consensus size: 96
21791459 AATTAAAAAT
* * * * * * * *
21791469 AAATCTTATCGCCCTGAAGTTGTATTGGAGCAGTTTGAAAATAAC-AAACCTATCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* * *
21791533 TGTAGTGG-AGCAGATT---G--A-AAATAAC
66 TGCAGTGGAAG-AGATTAAAGCTACAAGTTAC
* * * * *
21791558 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAATCTTATTTCCCTTAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* *
21791623 TACAGTGGAAGAAATTAAAGCTACAAGTTAC
66 TGCAGTGGAAGAGATTAAAGCTACAAGTTAC
* * ** * *
21791654 AAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGCCA-CAAATCTTACCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* * *
21791718 TGCAGTAG-AGCAGATTGAAG--A-TAG-T--
66 TGCAGTGGAAG-AGATTAAAGCTACAAGTTAC
* * * * * * * *
21791743 GAATCTTATCTCCTTGAAGTTACAGTGGAGTAGATTTAAAATAGTGAATCTTATTTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* * *
21791808 TACAGTGGAACAGATTAAAGCTACGAGTTAC
66 TGCAGTGGAAGAGATTAAAGCTACAAGTTAC
* * * * * * * *
21791839 AAATCTTCTCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGATACCTAATCTTATTTCCCTAAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* * *
21791904 TGTAGTGGAACAGATTAAAGCTACAAGCTAC
66 TGCAGTGGAAGAGATTAAAGCTACAAGTTAC
* * * * * * * *
21791935 TAATCTTATCTCCCTGAAGCTGCAGTGGAGCATATTGAAGATAGCAAACCTTATCTCCTTGGATT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* ** *
21792000 TGGAGT-G--GAGA--AAA--TTGAAGATAGC
66 TGCAGTGGAAGAGATTAAAGCTACAAGTTA-C
* * * *
21792025 AAATCTTATTTCCCTGAAATTGCAGTGGAGCAGATT-AAGCTA-CGAATCTTATCTCTCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
*
21792088 TGTAGTGG-AGTAGATT---G----AAGTTAC
66 TGCAGTGGAAG-AGATTAAAGCTACAAGTTAC
* * * * *
21792112 AAATCTTATCTCCCTAAAGTTGTAGTGGAGAAGATTGAAGATAGCGAATCTTATGTCCCTGAAAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
* * *
21792177 TACATTGGAACAGATTAAAGCTACAAGTTAC
66 TGCAGTGGAAGAGATTAAAGCTACAAGTTAC
* * * ** * * * *
21792208 AAATCTTATTTCCCCGAAATTGCAGTGGAATAGATTAAAGCTGAAGTTACAAATCTTATCTTCCT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT--AG---CGAATCTTATCTCCCT
* * * *
21792273 GAAGTTGTAGTGG-AGCAAATTGAAG--A-TAG--A-
61 GAAGTTGCAGTGGAAG-AGATTAAAGCTACAAGTTAC
* * * * * * * *
21792303 AAATCTTATTTCTCTGAAATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--A-TAG---CGAATCTTATCTCCC
* * * * * *
21792368 TAAAATTGTAGTGGAACAGAATAAGGCTACAAGTTAC
60 TGAAGTTGCAGTGGAAGAGATTAAAGCTACAAGTTAC
* **
21792405 AAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGCGA-C-AATTCTTATAC-CCCTGAA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAA-TCTTAT-CTCCCTGAA
21792467 GTTGCAGT
64 GTTGCAGT
21792475 AGGTTAGAAT
Statistics
Matches: 706, Mismatches: 159, Indels: 98
0.73 0.17 0.10
Matches are distributed among these distances:
87 32 0.05
88 30 0.04
89 113 0.16
90 90 0.13
91 10 0.01
92 4 0.01
93 7 0.01
94 5 0.01
95 88 0.12
96 251 0.36
97 1 0.00
98 5 0.01
99 4 0.01
100 1 0.00
101 30 0.04
102 35 0.05
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (96 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTGAAGT
TGCAGTGGAAGAGATTAAAGCTACAAGTTAC
Found at i:21791962 original size:51 final size:51
Alignment explanation
Indices: 21791789--21792450 Score: 367
Period size: 51 Copynumber: 13.9 Consensus size: 51
21791779 TAAAATAGTG
* * *
21791789 AATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACGAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * *
21791840 AATCTTCTCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGATAC------CT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * *
21791885 AATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGCTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * *
21791936 AATCTTATCTCCCTGAAGCTGCAGTGGAGCATATTGAAG--A-TAG---CA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * ** *
21791981 AACCTTATCTCCTTGGATTTGGAGTGG---AGA--AAA--TTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA-CA
* * *
21792026 AATCTTATTTCCCTGAAATTGCAGTGGAGCAGATT-AAGCTAC--G-----
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * **
21792069 AATCTTATCTCTCTGAAGTTGTAGTGGAGTAGATT---G----AAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * *
21792113 AATCTTATCTCCCTAAAGTTGTAGTGGAGA-AGATTGAAG--A-TAG---CG
1 AATCTTATCTCCCTGAAGTTGCAGTGGA-ACAGATTAAAGCTACAAGTTACA
* * * *
21792158 AATCTTATGTCCCTGAAATTACATTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * *
21792209 AATCTTATTTCCCCGAAATTGCAGTGGAATAGATTAAAGCT-GAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * *
21792259 AATCTTATCTTCCTGAAGTTGTAGTGGAGCAAATTGAAG--A-TAG--A-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * *
21792304 AATCTTATTTCTCTGAAATTGCAGTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * *
21792355 AATCTTATTTCCCTAAAATTGTAGTGGAACAGAATAAGGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
* * * *
21792406 AATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGCGACAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA
21792451 TTCTTATACC
Statistics
Matches: 465, Mismatches: 101, Indels: 90
0.71 0.15 0.14
Matches are distributed among these distances:
39 1 0.00
40 2 0.00
41 3 0.01
42 2 0.00
43 30 0.06
44 32 0.07
45 144 0.31
46 1 0.00
47 3 0.01
48 13 0.03
49 4 0.01
50 39 0.08
51 191 0.41
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (51 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
Found at i:21792021 original size:141 final size:141
Alignment explanation
Indices: 21791519--21792444 Score: 785
Period size: 141 Copynumber: 6.6 Consensus size: 141
21791509 ATAACAAACC
* * * *
21791519 TATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAAATAACAAACCTTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGT
* * * * * *
21791584 GGAGCAAACTGAAGATAGCGAATCTTATTTCCCTTAAGTTACAGTGGAAGAAATTAAAGCTACAA
66 GGAGCAAATTGAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAACAGATTAAAGCTACAA
21791649 GTTACAAATCT
131 GTTACAAATCT
* * ** *
21791660 TATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGCCA-CAAATCTTACCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGT
* * ** * * * ** *
21791724 AGAGCAGATTGAAGATAGTGAATCTTATCTCCTTGAAGTTACAGTGGAGTAGATTTAAA---A-T
66 GGAGCAAATTGAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAACAGA-TTAAAGCTACA
*
21791785 AG-T--GAATCT
130 AGTTACAAATCT
* * * * * * *
21791794 TATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACGAGTTACAAATCTTCTCTCTCTGAAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--A-TAG---CAAATCTTATCTCCCTGAAGT
* * * * * **
21791859 TGCAGTAGAGCAGATTAAAGATACCTAATCTTATTTCCCT-AAAGTTGTAGTGGAACAGATTAAA
60 TGCAGTGGAGCAAATTGAAGATAGCAAATCTTATTTCCCTGAAA-TTACAGTGGAACAGATTAAA
* *
21791923 GCTACAAGCTACTAATCT
124 GCTACAAGTTACAAATCT
* * * * * * *
21791941 TATCTCCCTGAAGCTGCAGTGGAGCATATTGAAGATAGCAAACCTTATCTCCTTGGATTTGGAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGT
* * *
21792006 GGAGAAAATTGAAGATAGCAAATCTTATTTCCCTGAAATTGCAGTGGAGCAGATT-AAGCTAC--
66 GGAGCAAATTGAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAACAGATTAAAGCTACAA
21792068 G-----AATCT
131 GTTACAAATCT
* * * * * *
21792074 TATCTCTCTGAAGTTGTAGTGGAGTAGATTGAAGTTA-CAAATCTTATCTCCCTAAAGTTGTAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGT
* * *
21792138 GGAG-AAGATTGAAGATAGCGAATCTTATGTCCCTGAAATTACATTGGAACAGATTAAAGCTACA
66 GGAGCAA-ATTGAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAACAGATTAAAGCTACA
21792202 AGTTACAAATCT
130 AGTTACAAATCT
* * * ** * * *
21792214 TATTTCCCCGAAATTGCAGTGGAATAGATTAAAGCTGAAGTTACAAATCTTATCTTCCTGAAGTT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT--AG---CAAATCTTATCTCCCTGAAGTT
* * * *
21792279 GTAGTGGAGCAAATTGAAGATAGAAAATCTTATTTCTCTGAAATTGCAGTGGAACAGATTAAAGC
61 GCAGTGGAGCAAATTGAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAACAGATTAAAGC
21792344 TACAAGTTACAAATCT
126 TACAAGTTACAAATCT
* * * * * * * *
21792360 TATTTCCCTAAAATTGTAGTGGAACAGAAT-AAGGCTACAAGTTACAAATCTTATATCCCTGAAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-G--A-TAG---CAAATCTTATCTCCCTGAAG
*
21792424 TTGCAGTGGAGCAGATTGAAG
59 TTGCAGTGGAGCAAATTGAAG
21792445 CGACAATTCT
Statistics
Matches: 640, Mismatches: 108, Indels: 68
0.78 0.13 0.08
Matches are distributed among these distances:
131 2 0.00
132 68 0.11
133 43 0.07
134 35 0.05
135 1 0.00
136 1 0.00
137 3 0.00
138 2 0.00
140 115 0.18
141 162 0.25
142 4 0.01
143 1 0.00
144 4 0.01
145 4 0.01
146 118 0.18
147 77 0.12
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (141 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGT
GGAGCAAATTGAAGATAGCAAATCTTATTTCCCTGAAATTACAGTGGAACAGATTAAAGCTACAA
GTTACAAATCT
Found at i:21792322 original size:95 final size:96
Alignment explanation
Indices: 21792208--21792382 Score: 273
Period size: 95 Copynumber: 1.8 Consensus size: 96
21792198 TACAAGTTAC
* *
21792208 AAATCTTATTTCCCCGAAATTGCAGTGGAATAGATTAAAGCT-GAAGTTACAAATCTTATCTT-C
1 AAATCTTATTTCCCCGAAATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTAT-TTCC
* *
21792271 CTGAAGTTGTAGTGGAGCAAATTGAAGATAGA
65 CTAAAATTGTAGTGGAGCAAATTGAAGATAGA
* *
21792303 AAATCTTATTTCTCTGAAATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCC
1 AAATCTTATTTCCCCGAAATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCC
21792368 TAAAATTGTAGTGGA
66 TAAAATTGTAGTGGA
21792383 ACAGAATAAG
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
95 41 0.57
96 31 0.43
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (96 bp):
AAATCTTATTTCCCCGAAATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCC
TAAAATTGTAGTGGAGCAAATTGAAGATAGA
Found at i:21792472 original size:146 final size:144
Alignment explanation
Indices: 21791556--21792474 Score: 545
Period size: 146 Copynumber: 6.5 Consensus size: 144
21791546 ATTGAAAATA
* * * * * * *
21791556 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAATCTTATTTCCCTTAA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAGA-C-AATCTTATATCCCTGAA
* * * * * ** * * **
21791621 GTTACAGTGGAAGAAATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGTA
64 ATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAACA
* *
21791686 GATTGAAGC-C-----
129 GAATAAAGCTCAAGTT
* * * ** * *
21791696 ACAAATCTTACCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGTGAATCTTATCTCCTTGAA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG--AGACAATCTTATATCCCTGAA
* * ** * * ** * *
21791761 GTTACAGTGGAGTAGATTTAAA---A-TAG-T--GAATCTTATTTCCCTGAAGTTACAGTGGAAC
64 ATTGCAGTGGAACAGA-TTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAAC
* *
21791819 AGATTAAAGCTACGAGTT
128 AGAATAAAGCT-CAAGTT
* * * * * * *
21791837 ACAAATCTTCTCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGATACCTAATCTTATTTCCCT-AA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAGA-C-AATCTTATATCCCTGAA
* * * * ** ** *
21791901 AGTTGTAGTGGAACAGATTAAAGCTACAAGCTACTAATCTTATCTCCCTGAAGCTGCAGTGGAGC
64 A-TTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAAC
* * * *
21791966 ATATTGAAGAT--AG--
128 AGAATAAAGCTCAAGTT
* * * * * * * * *
21791979 -CAAACCTTATCTCCTTGGATTTGGAGTGGAGAAAATTGAAGATAGCAAATCTTATTTCCCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAGA-C-AATCTTATATCCCTGAA
* * * ** * *
21792043 ATTGCAGTGGAGCAGATT-AAGCTAC--G-----AATCTTATCTCTCTGAAGTTGTAGTGG---A
64 ATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAACA
* * *
21792097 G--TAGA-TTGAAGTT
129 GAATAAAGCTCAAGTT
* * * *
21792110 ACAAATCTTATCTCCCTAAAGTTGTAGTGGAGAAGATTGAAGATAGCGAATCTTATGTCCCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAGA-C-AATCTTATATCCCTGAA
* * * *
21792175 ATTACATTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCGAAATTGCAGTGGAATA
64 ATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAACA
* *
21792240 GATTAAAGCTGAAGTT
129 GAATAAAGCTCAAGTT
* * * * *
21792256 ACAAATCTTATCTTCCTGAAGTTGTAGTGGAGCAAATTGAAGATAGAAAATCTTATTTCTCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG--AGACAATCTTATATCCCTGAA
* *
21792321 ATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCTAAAATTGTAGTGGAACA
64 ATTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAACA
*
21792386 GAATAAGGCTACAAGTT
129 GAATAAAGCT-CAAGTT
* * * * *
21792403 ACAAATCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGCGACAATTCTTATACCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAGACAA-TCTTATATCCCTGAAA
21792468 TTGCAGT
65 TTGCAGT
21792475 AGGTTAGAAT
Statistics
Matches: 624, Mismatches: 111, Indels: 82
0.76 0.14 0.10
Matches are distributed among these distances:
127 1 0.00
128 2 0.00
129 2 0.00
130 1 0.00
132 70 0.11
133 31 0.05
134 36 0.06
135 1 0.00
136 2 0.00
137 2 0.00
138 2 0.00
139 1 0.00
140 100 0.16
141 129 0.21
142 4 0.01
143 3 0.00
144 4 0.01
145 8 0.01
146 146 0.23
147 77 0.12
148 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (144 bp):
ACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGAGACAATCTTATATCCCTGAAAT
TGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATTTCCCCAAAATTGCAGTGGAACAGA
ATAAAGCTCAAGTT
Found at i:21793087 original size:22 final size:22
Alignment explanation
Indices: 21793059--21793120 Score: 85
Period size: 21 Copynumber: 2.9 Consensus size: 22
21793049 AAAAGAAAGG
21793059 TGATTTTTTTTTATATTTTCAT
1 TGATTTTTTTTTATATTTTCAT
21793081 TGA-TTTTTTTTATATTTTCAT
1 TGATTTTTTTTTATATTTTCAT
*
21793102 T-CTTTATTTTTT-TATTTTC
1 TGATTT-TTTTTTATATTTTC
21793121 GAAAACATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 28 0.76
22 9 0.24
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.74
Consensus pattern (22 bp):
TGATTTTTTTTTATATTTTCAT
Found at i:21793978 original size:15 final size:15
Alignment explanation
Indices: 21793943--21793975 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
21793933 TGTTAATTCT
21793943 TTTATTTTTTATTTA
1 TTTATTTTTTATTTA
21793958 TTTATTTTCTTATTTA
1 TTTATTTT-TTATTTA
21793974 TT
1 TT
21793976 ATTCCTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTATTTTTTATTTA
Found at i:21793984 original size:23 final size:24
Alignment explanation
Indices: 21793944--21793989 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
21793934 GTTAATTCTT
* *
21793944 TTATTTTTTATTTATTTA-TTTTC
1 TTATTTATTATTCATTTACTTTTC
*
21793967 TTATTTATTATTCCTTTACTTTT
1 TTATTTATTATTCATTTACTTTT
21793990 TGTTATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (24 bp):
TTATTTATTATTCATTTACTTTTC
Found at i:21794060 original size:21 final size:22
Alignment explanation
Indices: 21794036--21794090 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
21794026 CGAACATCTA
*
21794036 TTATTTATTTTATT-TTAGTAT
1 TTATTTATTTTATTAGTAGTAT
*
21794057 TTATTACTATTTTATTAGTATTAT
1 TTATT--TATTTTATTAGTAGTAT
*
21794081 CTATTTATTT
1 TTATTTATTT
21794091 ATTCATTCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 5 0.18
22 5 0.18
23 9 0.32
24 9 0.32
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (22 bp):
TTATTTATTTTATTAGTAGTAT
Found at i:21794132 original size:60 final size:59
Alignment explanation
Indices: 21794068--21794181 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 59
21794058 TATTACTATT
21794068 TTATTAGTATT-ATCTATTTATTTATTCATTCTTTTACTTTTTAAATACTTAAATTTAATA
1 TTATTAGT-TTCATCTATTTATTTATT-ATTCTTTTACTTTTTAAATACTTAAATTTAATA
* * * *
21794128 TTATTTGTTTCATCTATTTATTTATTATTCTTTTATTTTTTTAATATTTAAATT
1 TTATTAGTTTCATCTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATT
21794182 GGATACTACT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 27 0.55
60 22 0.45
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (59 bp):
TTATTAGTTTCATCTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAATA
Found at i:21794903 original size:27 final size:27
Alignment explanation
Indices: 21794861--21794913 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
21794851 AACTAGGTAC
*
21794861 CTATTTTGGGCGTTACGAGGGTGCTAT
1 CTATTTTGGGCATTACGAGGGTGCTAT
21794888 CTATTTTGGGCATTACGAGGGTGCTA
1 CTATTTTGGGCATTACGAGGGTGCTA
21794914 ACCCTTCCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.15, G:0.32, T:0.36
Consensus pattern (27 bp):
CTATTTTGGGCATTACGAGGGTGCTAT
Found at i:21797028 original size:26 final size:26
Alignment explanation
Indices: 21796999--21797106 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
21796989 TGATACAAAT
*
21796999 TGATAATGGGTTAGGTAACTGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
21797025 TGATAATGGGCTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21797051 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21797077 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21797103 TGAT
1 TGAT
21797107 GAGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:21798750 original size:27 final size:26
Alignment explanation
Indices: 21798701--21798859 Score: 151
Period size: 27 Copynumber: 5.9 Consensus size: 26
21798691 AGGAAGCGTC
* * *
21798701 CTGGTGGCTATGCCATAATTATCTAAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
* *
21798728 CTGGTGGCTGTACCACATATATCTG-T
1 CTGGTGGCTCTGCCACA-ATATCTGAT
*
21798754 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTGAT
* *
21798782 CTGGTGGCTCTGCCACATAAATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
21798809 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
21798836 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
21798860 GCAGCCTCGC
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 9 0.08
27 100 0.89
28 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:21798784 original size:54 final size:54
Alignment explanation
Indices: 21798698--21798841 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
21798688 TGGAGGAAGC
* * * *
21798698 GTCCTGGTGGCTATGCCATAATTATCTAATCTGGTGGCTGTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATAAATCT
*
21798752 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATAAATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATAAATCT
* *
21798806 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
21798842 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 6 0.07
54 76 0.93
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATAAATCT
Found at i:21805087 original size:25 final size:26
Alignment explanation
Indices: 21805010--21805090 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
21805000 TGATACAAAT
*
21805010 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTCAGGTAAATGTTCCA
21805036 TGATAATGGGTCAGGTAAATGTTCCA
1 TGATAATGGGTCAGGTAAATGTTCCA
21805062 TGATAATGGGTCAGGT-AATGTTCCA
1 TGATAATGGGTCAGGTAAATGTTCCA
21805087 TGAT
1 TGAT
21805091 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 13 0.24
26 41 0.76
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (26 bp):
TGATAATGGGTCAGGTAAATGTTCCA
Found at i:21806768 original size:54 final size:54
Alignment explanation
Indices: 21806678--21806822 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
21806668 ATGGAGGAAG
* * *
21806678 TGTCCTGGTGGCTATGCCACAATTATCTAATTTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCAACATAAATC
*
21806732 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCAACATAAATC
1 TGTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCAACATAAATC
* *
21806786 TGTTCTGGTGGCTCTGCCACAA-TATCTATATCTGGTG
1 TGTCCTGGTGGCTATGCCACAATTATCTA-ATCTGGTG
21806823 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.34
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCAACATAAATC
Found at i:21806819 original size:27 final size:27
Alignment explanation
Indices: 21806682--21806839 Score: 137
Period size: 27 Copynumber: 5.9 Consensus size: 27
21806672 AGGAAGTGTC
*
21806682 CTGGTGGCTATGCCACAATTATCTA-AT
1 CTGGTGGCTCTGCCACAA-TATCTATAT
* * *
21806709 TTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTATAT
* *
21806736 CTGGTGGCTATGCCACAATTATCT-GAT
1 CTGGTGGCTCTGCCACAA-TATCTATAT
* * *
21806763 CTGGTGGCTCTGCAACATAAATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTATAT
21806790 CTGGTGGCTCTGCCACAATATCTATAT
1 CTGGTGGCTCTGCCACAATATCTATAT
* *
21806817 CTGGTGACT-TCGTCACAATATCT
1 CTGGTGGCTCT-GCCACAATATCT
21806840 GGCAGCCTCG
Statistics
Matches: 106, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
26 8 0.08
27 96 0.91
28 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTATAT
Found at i:21807807 original size:39 final size:39
Alignment explanation
Indices: 21807753--21807832 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
21807743 GGGTGTTACA
* *
21807753 TTTCCAGCATGTAGCCTGCGGACCTCAGGTCCGGATATG
1 TTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATATG
21807792 TTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATATG
1 TTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATATG
21807831 TT
1 TT
21807833 CCAAATATCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (39 bp):
TTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATATG
Found at i:21814335 original size:5 final size:5
Alignment explanation
Indices: 21814325--21814350 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
21814315 TAATAATTAA
21814325 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
21814351 GGAAGATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:21816167 original size:18 final size:18
Alignment explanation
Indices: 21816144--21816179 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
21816134 TGAGAATTTC
*
21816144 TGATACCGTGACTGAATG
1 TGATACCGTGACTAAATG
*
21816162 TGATACTGTGACTAAATG
1 TGATACCGTGACTAAATG
21816180 CGTTACTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (18 bp):
TGATACCGTGACTAAATG
Found at i:21817786 original size:18 final size:18
Alignment explanation
Indices: 21817763--21817800 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
21817753 AAAAATCACT
21817763 TAACAA-AATACTTATAAA
1 TAACAATAATACTTA-AAA
21817781 TAACAATTAATACTTAAAA
1 TAACAA-TAATACTTAAAA
21817800 T
1 T
21817801 TCATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.32
Consensus pattern (18 bp):
TAACAATAATACTTAAAA
Found at i:21820378 original size:48 final size:50
Alignment explanation
Indices: 21820326--21820433 Score: 118
Period size: 48 Copynumber: 2.2 Consensus size: 50
21820316 ATTTAGTTTT
* * *
21820326 ATTAAAATTATAT-ATATATCCAATAAT-TTTTTTTATTAATAT-TAAAGA
1 ATTAAAATTATATAATATAT-CAAAAATATTTTATTATAAATATATAAAGA
* *
21820374 ATTAAAAATA-ATAATATATCAAAAATATTTTATTATAAATATAATAAATA
1 ATTAAAATTATATAATATATCAAAAATATTTTATTATAAATAT-ATAAAGA
21820424 ATT-AAATTAT
1 ATTAAAATTAT
21820434 TGAAACTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
47 8 0.16
48 28 0.57
49 5 0.10
50 8 0.16
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (50 bp):
ATTAAAATTATATAATATATCAAAAATATTTTATTATAAATATATAAAGA
Found at i:21821574 original size:37 final size:37
Alignment explanation
Indices: 21821515--21821585 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
21821505 AGACATCTTG
* *
21821515 TTTCGATACTAAACTGAAATAATAAGTCTAGATTTCA
1 TTTCAATACTAAACTAAAATAATAAGTCTAGATTTCA
*
21821552 TTTCAATATTAAACTAAAATAATAAGTCTAGATT
1 TTTCAATACTAAACTAAAATAATAAGTCTAGATT
21821586 CCGTTTCGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (37 bp):
TTTCAATACTAAACTAAAATAATAAGTCTAGATTTCA
Found at i:21821793 original size:24 final size:24
Alignment explanation
Indices: 21821766--21821824 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 24
21821756 TCTTCCAATG
* **
21821766 TATACATATATTAAATTTATTTAA
1 TATACATATATAAAATAAATTTAA
* *
21821790 TATATAAATATAAAATAAATTTAA
1 TATACATATATAAAATAAATTTAA
21821814 T-TAGCATATAT
1 TATA-CATATAT
21821825 GTATACATAC
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (24 bp):
TATACATATATAAAATAAATTTAA
Found at i:21822871 original size:22 final size:22
Alignment explanation
Indices: 21822846--21822889 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
21822836 AAATAATTGC
21822846 AGGAATAAATTTCAAAAGTTGT
1 AGGAATAAATTTCAAAAGTTGT
21822868 AGGAATAAATTTCAAAAGTTGT
1 AGGAATAAATTTCAAAAGTTGT
21822890 GAAGTGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (22 bp):
AGGAATAAATTTCAAAAGTTGT
Found at i:21825149 original size:2 final size:2
Alignment explanation
Indices: 21825142--21825173 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
21825132 ACAGTAAATA
21825142 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
21825174 TGATGGGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21831836 original size:13 final size:13
Alignment explanation
Indices: 21831818--21831856 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
21831808 AGATATTATT
21831818 TTATTTAGTTTTA
1 TTATTTAGTTTTA
21831831 TTATTTA-TTTTA
1 TTATTTAGTTTTA
*
21831843 TTAATTTAGCTTTA
1 TT-ATTTAGTTTTA
21831857 GCATATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 7 0.30
13 12 0.52
14 4 0.17
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (13 bp):
TTATTTAGTTTTA
Found at i:21839348 original size:21 final size:21
Alignment explanation
Indices: 21839324--21839364 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
21839314 ACCTTTTCTA
21839324 AAGTTAAAA-GTCAAAACCATT
1 AAGTTAAAAGGT-AAAACCATT
21839345 AAGTTAAAAGGTAAAACCAT
1 AAGTTAAAAGGTAAAACCAT
21839365 GTTGTTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.22
Consensus pattern (21 bp):
AAGTTAAAAGGTAAAACCATT
Found at i:21843226 original size:27 final size:27
Alignment explanation
Indices: 21843176--21843262 Score: 108
Period size: 27 Copynumber: 3.2 Consensus size: 27
21843166 GTGACGAAGT
21843176 CACCAGATACAGATAT-TGTGGCAGAGC
1 CACCAGA-ACAGATATATGTGGCAGAGC
21843203 C-CCTAGAACAGATATATGTGGCAGAGC
1 CACC-AGAACAGATATATGTGGCAGAGC
* *
21843230 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
21843257 CACCAG
1 CACCAG
21843263 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
26 11 0.20
27 41 0.76
28 2 0.04
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGAGC
Found at i:21843665 original size:8 final size:8
Alignment explanation
Indices: 21843649--21843678 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
21843639 CTCAAAATAC
21843649 CGGCTTTT
1 CGGCTTTT
*
21843657 CGGCATTT
1 CGGCTTTT
21843665 CGGCTTTT
1 CGGCTTTT
21843673 CGGCTT
1 CGGCTT
21843679 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:21844886 original size:26 final size:26
Alignment explanation
Indices: 21844855--21844962 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
21844845 TGAAATGCCC
*
21844855 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
21844881 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
21844907 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
21844933 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21844959 ATCA
1 ATCA
21844963 ATTTGTACCG
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:21849718 original size:46 final size:45
Alignment explanation
Indices: 21849617--21849742 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 45
21849607 GATGGTATGT
21849617 GAGCTAGTGTAAGACATGTCTGAGACATGCATCGGCCACATTATGAGA
1 GAGCTAGTGTAAGACATGTCTG-GACATGCATCGG-C-CATTATGAGA
* *
21849665 -A-CCAGTGTAAGACATGTCTAGGACATGCATCTG-CATTGA-GACGA
1 GAGCTAGTGTAAGACATGTCT-GGACATGCATCGGCCATT-ATGA-GA
*
21849709 GAGCTAGTGTAAGACATGTATGGGACATGCATCG
1 GAGCTAGTGTAAGACATGTCT-GGACATGCATCG
21849743 TCCTCGGGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
43 6 0.09
44 3 0.04
45 1 0.01
46 55 0.82
47 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGACATGCATCGGCCATTATGAGA
Found at i:21853279 original size:20 final size:20
Alignment explanation
Indices: 21853254--21853302 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
21853244 TAGGGATCAA
21853254 TTTGAAACAAAATAGAAAAC
1 TTTGAAACAAAATAGAAAAC
* * *
21853274 TTTGAAA-AAACTTGAAAAT
1 TTTGAAACAAAATAGAAAAC
21853293 TTTAGAAACA
1 TTT-GAAACA
21853303 GGGGTCACAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 12 0.50
20 11 0.46
21 1 0.04
ACGTcount: A:0.55, C:0.08, G:0.10, T:0.27
Consensus pattern (20 bp):
TTTGAAACAAAATAGAAAAC
Found at i:21854914 original size:24 final size:24
Alignment explanation
Indices: 21854881--21854927 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
21854871 ATTGATATAA
* **
21854881 TGGTATCCTTTTTGACCTTTTCAT
1 TGGTAACCTTTTCAACCTTTTCAT
21854905 TGGTAACCTTTTCAACCTTTTCA
1 TGGTAACCTTTTCAACCTTTTCA
21854928 CTGTTTCGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.23, G:0.11, T:0.49
Consensus pattern (24 bp):
TGGTAACCTTTTCAACCTTTTCAT
Found at i:21861057 original size:21 final size:21
Alignment explanation
Indices: 21861027--21861067 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
21861017 GAAATGTTAA
*
21861027 TATGATTTGTATTACTACGCT
1 TATGAGTTGTATTACTACGCT
*
21861048 TATGAGTTGTATTCCTACGC
1 TATGAGTTGTATTACTACGC
21861068 CATTAGTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (21 bp):
TATGAGTTGTATTACTACGCT
Found at i:21865484 original size:24 final size:23
Alignment explanation
Indices: 21865457--21865534 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 23
21865447 CGAAACAAAA
21865457 TCCCGTTATTAGCTCTCATGAGCT
1 TCCCGTTATTAGCTCTCA-GAGCT
*
21865481 TCCCGTTATATAGTTCTTGC-GAGCT
1 TCCCGTTAT-TAGCTC-T-CAGAGCT
* * *
21865506 TCCCATTAATAGCTCTTCAGAGCA
1 TCCCGTTATTAGCTC-TCAGAGCT
21865530 TCCCG
1 TCCCG
21865535 ATTGGTTATG
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
23 1 0.02
24 24 0.55
25 17 0.39
26 1 0.02
27 1 0.02
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (23 bp):
TCCCGTTATTAGCTCTCAGAGCT
Found at i:21865509 original size:25 final size:24
Alignment explanation
Indices: 21865476--21865522 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
21865466 TAGCTCTCAT
* *
21865476 GAGCTTCCCGTTATATAGTTCTTGC
1 GAGCTTCCCATTA-ATAGCTCTTGC
21865501 GAGCTTCCCATTAATAGCTCTT
1 GAGCTTCCCATTAATAGCTCTT
21865523 CAGAGCATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (24 bp):
GAGCTTCCCATTAATAGCTCTTGC
Found at i:21866961 original size:43 final size:43
Alignment explanation
Indices: 21866914--21867066 Score: 155
Period size: 43 Copynumber: 3.6 Consensus size: 43
21866904 ATATAGGATT
* * * *
21866914 TCGATATGTGATTTCGTGTAAGACTATGTCTGGGAAATTGGTA
1 TCGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCA
* * *
21866957 TCGATTTGAGATTTGCGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGATTT-CATGTAAGACCATGTCTGGGACATTGGCA
* * * * * *
21867001 TTG-TATTTGATTTCATGTAAAACCCTGTTTGGGACAGTGGCA
1 TCGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCA
* *
21867043 TCGATATTTGATTACATGTAAGAC
1 TCGATATGTGATTTCATGTAAGAC
21867067 TACATCTAGG
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 26 0.29
43 37 0.41
44 28 0.31
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (43 bp):
TCGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCA
Found at i:21866987 original size:44 final size:43
Alignment explanation
Indices: 21866914--21866998 Score: 125
Period size: 44 Copynumber: 2.0 Consensus size: 43
21866904 ATATAGGATT
* *
21866914 TCGATATGTGATTTCGTGTAAGACTATGTCTGGGAAATTGGTA
1 TCGATATGAGATTTCGTGTAAGACCATGTCTGGGAAATTGGTA
* *
21866957 TCGATTTGAGATTTGCGTGTAAGACCATGTCTGGGACATTGG
1 TCGATATGAGATTT-CGTGTAAGACCATGTCTGGGAAATTGG
21866999 CATTGTATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 12 0.32
44 25 0.68
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (43 bp):
TCGATATGAGATTTCGTGTAAGACCATGTCTGGGAAATTGGTA
Found at i:21867035 original size:42 final size:43
Alignment explanation
Indices: 21866974--21867063 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 43
21866964 GAGATTTGCG
* * * *
21866974 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTTGATTTCA
1 TGTAAAACCATGTCTGGGACAGTGGCATCGATATTTGATTACA
* *
21867016 TGTAAAACCCTGTTTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAAACCATGTCTGGGACAGTGGCATCGATATTTGATTACA
21867059 TGTAA
1 TGTAA
21867064 GACTACATCT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 25 0.61
43 16 0.39
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (43 bp):
TGTAAAACCATGTCTGGGACAGTGGCATCGATATTTGATTACA
Found at i:21874640 original size:42 final size:42
Alignment explanation
Indices: 21874530--21874694 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
21874520 TTCCGATATG
* *
21874530 TGATTTCGTGTAAGA-CCAGATCTGGGACGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACCCTG-TCTGGGACATTGGCATCGTATT
* * * *
21874571 TGAGATTTATGTGTAAGGCCATGTCTGGGACATTAGCATCGTATT
1 T--GATTT-CGTGTAAGACCCTGTCTGGGACATTGGCATCGTATT
*
21874616 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCG-TATT
* * * *
21874659 TGATTACATGTAAGACCAC-GTTTGGGACGTTGGCAT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACATTGGCAT
21874695 TGTACGTGTT
Statistics
Matches: 101, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 43 0.43
44 24 0.24
45 6 0.06
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGTATT
Found at i:21876469 original size:58 final size:58
Alignment explanation
Indices: 21876396--21876513 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
21876386 TACTTGAATG
21876396 TGGAACTTGCTTGATGACCCTGTTCATCCATGATCAATGGCTATTATATGTGATTATA
1 TGGAACTTGCTTGATGACCCTGTTCATCCATGATCAATGGCTATTATATGTGATTATA
21876454 TGGAACTTGCTTGATGACCCTGTTCATCCATGATCAATGGCTATTATATGTGATTATA
1 TGGAACTTGCTTGATGACCCTGTTCATCCATGATCAATGGCTATTATATGTGATTATA
21876512 TG
1 TG
21876514 ACTAACATGA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.38
Consensus pattern (58 bp):
TGGAACTTGCTTGATGACCCTGTTCATCCATGATCAATGGCTATTATATGTGATTATA
Found at i:21883653 original size:25 final size:25
Alignment explanation
Indices: 21883625--21883692 Score: 64
Period size: 27 Copynumber: 2.6 Consensus size: 25
21883615 TCCGATATAT
*
21883625 GGATCTTCGGAGCTTCCCGATTAAA
1 GGATCTTCGGAGCTTCCCAATTAAA
* * *
21883650 GGATCTTTCATGAGCTTCCTAATTAAT
1 GGATC-TTC-GGAGCTTCCCAATTAAA
* *
21883677 GGCTCTCCGGAGCTTC
1 GGATCTTCGGAGCTTC
21883693 TATATATTGG
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
25 12 0.35
26 5 0.15
27 17 0.50
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (25 bp):
GGATCTTCGGAGCTTCCCAATTAAA
Found at i:21883716 original size:24 final size:24
Alignment explanation
Indices: 21883689--21883764 Score: 80
Period size: 24 Copynumber: 3.2 Consensus size: 24
21883679 CTCTCCGGAG
*
21883689 CTTCTATATATTGGCTCACTTGAA
1 CTTCTAGATATTGGCTCACTTGAA
* *
21883713 CTTCTCGATATTGGCTCGCTTGAA
1 CTTCTAGATATTGGCTCACTTGAA
** * * *
21883737 CTTCCCGATACTGGCTCACATGAG
1 CTTCTAGATATTGGCTCACTTGAA
21883761 CTTC
1 CTTC
21883765 CCATTATATG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.36
Consensus pattern (24 bp):
CTTCTAGATATTGGCTCACTTGAA
Found at i:21883765 original size:24 final size:24
Alignment explanation
Indices: 21883700--21883766 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
21883690 TTCTATATAT
* *
21883700 TGGCTCACTTGAACTTCTCGATAT
1 TGGCTCACTTGAACTTCCCGATAC
*
21883724 TGGCTCGCTTGAACTTCCCGATAC
1 TGGCTCACTTGAACTTCCCGATAC
* *
21883748 TGGCTCACATGAGCTTCCC
1 TGGCTCACTTGAACTTCCC
21883767 ATTATATGGC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.31
Consensus pattern (24 bp):
TGGCTCACTTGAACTTCCCGATAC
Found at i:21883778 original size:25 final size:24
Alignment explanation
Indices: 21883748--21883813 Score: 62
Period size: 27 Copynumber: 2.6 Consensus size: 24
21883738 TTCCCGATAC
21883748 TGGCTCACATGAGCTTCCCATTATA
1 TGGCTCACATGAGCTTCCCATT-TA
* *
21883773 TGGCTCGAAAGAGAGCTTCCCATTTA
1 TGGCTC-ACA-TGAGCTTCCCATTTA
21883799 TGTGCTC-CTATGAGC
1 TG-GCTCAC-ATGAGC
21883814 ACTCCTGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
25 10 0.30
26 7 0.21
27 16 0.48
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (24 bp):
TGGCTCACATGAGCTTCCCATTTA
Found at i:21889657 original size:16 final size:16
Alignment explanation
Indices: 21889636--21889666 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21889626 AAGTGAAAAA
*
21889636 TCCTATTAATTGTTTT
1 TCCTATTAACTGTTTT
21889652 TCCTATTAACTGTTT
1 TCCTATTAACTGTTT
21889667 CAGGCTAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (16 bp):
TCCTATTAACTGTTTT
Found at i:21903811 original size:39 final size:39
Alignment explanation
Indices: 21903753--21903849 Score: 158
Period size: 39 Copynumber: 2.5 Consensus size: 39
21903743 TGAACTGAAA
* * * *
21903753 CCCGAAGTCTAACTGAAGCACATAAGTGCTAAACGGAAT
1 CCCGAAGGCTAACTAAAGCACACAAGTGCTAAACGGAAG
21903792 CCCGAAGGCTAACTAAAGCACACAAGTGCTAAACGGAAG
1 CCCGAAGGCTAACTAAAGCACACAAGTGCTAAACGGAAG
21903831 CCCGAAGGCTAACTAAAGC
1 CCCGAAGGCTAACTAAAGC
21903850 TCATCAGAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (39 bp):
CCCGAAGGCTAACTAAAGCACACAAGTGCTAAACGGAAG
Found at i:21906071 original size:15 final size:15
Alignment explanation
Indices: 21906033--21906074 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
21906023 GAAGCCCAGA
21906033 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
21906048 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
*
21906063 ATAGGGAAATCC
1 ATAAGGAAATCC
21906075 TATTTACAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:21909388 original size:19 final size:19
Alignment explanation
Indices: 21909320--21909421 Score: 68
Period size: 18 Copynumber: 5.4 Consensus size: 19
21909310 ACATCGTGAT
* *
21909320 CTGAAGCTCGAAGT-CTAA
1 CTGAAGCCCAAAGTGCTAA
* *
21909338 CTGAAGCACACAAGTTCTAA
1 CTGAAGCCCA-AAGTGCTAA
*
21909358 ATGGAAGCCCAAAG-GCTAA
1 CT-GAAGCCCAAAGTGCTAA
21909377 CTGAAGCACC-AAGTGCTAAA
1 CTGAAGC-CCAAAGTGCT-AA
* *
21909397 CAGAAGCCCGAAG-GCTAA
1 CTGAAGCCCAAAGTGCTAA
*
21909415 CTAAAGC
1 CTGAAGC
21909422 TCATCAGAGC
Statistics
Matches: 68, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
18 23 0.34
19 19 0.28
20 19 0.28
21 7 0.10
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.15
Consensus pattern (19 bp):
CTGAAGCCCAAAGTGCTAA
Found at i:21909403 original size:38 final size:39
Alignment explanation
Indices: 21909334--21909421 Score: 124
Period size: 38 Copynumber: 2.3 Consensus size: 39
21909324 AGCTCGAAGT
* **
21909334 CTAACTGAAGCACACAAGTTCTAAATGGAAGCCCAAAGG
1 CTAACTGAAGCACACAAGTGCTAAACAGAAGCCCAAAGG
*
21909373 CTAACTGAAGCAC-CAAGTGCTAAACAGAAGCCCGAAGG
1 CTAACTGAAGCACACAAGTGCTAAACAGAAGCCCAAAGG
*
21909411 CTAACTAAAGC
1 CTAACTGAAGC
21909422 TCATCAGAGC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 31 0.70
39 13 0.30
ACGTcount: A:0.41, C:0.25, G:0.20, T:0.14
Consensus pattern (39 bp):
CTAACTGAAGCACACAAGTGCTAAACAGAAGCCCAAAGG
Found at i:21914599 original size:4 final size:4
Alignment explanation
Indices: 21914590--21914675 Score: 172
Period size: 4 Copynumber: 21.5 Consensus size: 4
21914580 AGGAGTTGCA
21914590 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
21914638 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
21914676 TTATGTGTTT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 82 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:21919774 original size:28 final size:29
Alignment explanation
Indices: 21919734--21919788 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
21919724 CACGGGAGAA
*
21919734 GACACGGGCGTGT-CTAGGCCGTGTGAGG
1 GACACGGGCGTGTGCTACGCCGTGTGAGG
* *
21919762 GACATGGGCGTGTGCTTCGCCGTGTGA
1 GACACGGGCGTGTGCTACGCCGTGTGA
21919789 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.13, C:0.22, G:0.44, T:0.22
Consensus pattern (29 bp):
GACACGGGCGTGTGCTACGCCGTGTGAGG
Found at i:21921354 original size:25 final size:25
Alignment explanation
Indices: 21921325--21921377 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
21921315 AGCCAAACCG
*
21921325 AGCCTTTGTGGCGAGTAATCTGTAA
1 AGCCTTTGTGGCAAGTAATCTGTAA
*
21921350 AGCCTTTGTGGCAAGTTATCTGTAA
1 AGCCTTTGTGGCAAGTAATCTGTAA
21921375 AGC
1 AGC
21921378 TGTAACAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (25 bp):
AGCCTTTGTGGCAAGTAATCTGTAA
Found at i:21930734 original size:19 final size:19
Alignment explanation
Indices: 21930710--21930751 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
21930700 GTCAAAAGTT
21930710 TAGAGGTAAATTTGTAATC
1 TAGAGGTAAATTTGTAATC
*
21930729 TAGAGGTAAATTTGTAATT
1 TAGAGGTAAATTTGTAATC
21930748 TAGA
1 TAGA
21930752 CAAAATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.38, C:0.02, G:0.21, T:0.38
Consensus pattern (19 bp):
TAGAGGTAAATTTGTAATC
Found at i:21931239 original size:22 final size:22
Alignment explanation
Indices: 21931211--21931267 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
21931201 TGCTCGTATA
*
21931211 AGCTTACTATTTAGC-AGAATAG
1 AGCTTACTATTCAGCTAG-ATAG
* *
21931233 AGCTTACTGTTCAGCTTGATAG
1 AGCTTACTATTCAGCTAGATAG
21931255 AGCTTACTATTCA
1 AGCTTACTATTCA
21931268 TCAGCTCAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 29 0.97
23 1 0.03
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (22 bp):
AGCTTACTATTCAGCTAGATAG
Found at i:21938903 original size:2 final size:2
Alignment explanation
Indices: 21938896--21938921 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
21938886 GCTAGGTCAA
21938896 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
21938922 CTTGGGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21939129 original size:16 final size:16
Alignment explanation
Indices: 21939108--21939141 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
21939098 AACCGCCATA
21939108 GCCAATATAAGAATCT
1 GCCAATATAAGAATCT
* *
21939124 GCCAATATTAGTATCT
1 GCCAATATAAGAATCT
21939140 GC
1 GC
21939142 ATGTATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (16 bp):
GCCAATATAAGAATCT
Found at i:21948097 original size:45 final size:45
Alignment explanation
Indices: 21948033--21948122 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
21948023 CATCAATAAG
21948033 AGGTATGTTGATTTTTACCTTTCGAAAGTTGTCGAGGATCTTCTT
1 AGGTATGTTGATTTTTACCTTTCGAAAGTTGTCGAGGATCTTCTT
*
21948078 AGGTATGTTGATTTTTACCTTTCGAAAGTTGTCGAGTATCTTCTT
1 AGGTATGTTGATTTTTACCTTTCGAAAGTTGTCGAGGATCTTCTT
21948123 CTCTTTTCGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.20, C:0.13, G:0.21, T:0.46
Consensus pattern (45 bp):
AGGTATGTTGATTTTTACCTTTCGAAAGTTGTCGAGGATCTTCTT
Found at i:21949997 original size:12 final size:12
Alignment explanation
Indices: 21949982--21950012 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
21949972 ATAATTAAAT
21949982 AATTAAATTAGA
1 AATTAAATTAGA
*
21949994 AATTAAATTGGA
1 AATTAAATTAGA
21950006 AATTAAA
1 AATTAAA
21950013 CTCAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (12 bp):
AATTAAATTAGA
Found at i:21959418 original size:13 final size:12
Alignment explanation
Indices: 21959400--21959451 Score: 50
Period size: 13 Copynumber: 4.1 Consensus size: 12
21959390 ATTTTAAATC
21959400 AAACTTTTTAAA
1 AAACTTTTTAAA
*
21959412 AACACTTTTAAAA
1 AA-ACTTTTTAAA
* *
21959425 AATATTTTTTTACA
1 AA-A-CTTTTTAAA
21959439 AAACTTTTTAAA
1 AAACTTTTTAAA
21959451 A
1 A
21959452 GCATTAACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
12 10 0.32
13 13 0.42
14 8 0.26
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (12 bp):
AAACTTTTTAAA
Found at i:21960671 original size:24 final size:26
Alignment explanation
Indices: 21960625--21960677 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
21960615 TTTATTTTGG
*
21960625 TTAGTGAAAGTCAATTGAGTTTT-TT
1 TTAGTGAAAGACAATTGAGTTTTGTT
*
21960650 TTAGTG-AAGACAATTGATTTTTGTT
1 TTAGTGAAAGACAATTGAGTTTTGTT
21960675 TTA
1 TTA
21960678 CCCTAATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.28, C:0.04, G:0.19, T:0.49
Consensus pattern (26 bp):
TTAGTGAAAGACAATTGAGTTTTGTT
Found at i:21962019 original size:16 final size:16
Alignment explanation
Indices: 21961998--21962029 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
21961988 GTTCTGTTGA
21961998 GACCCATCTCTTCCAT
1 GACCCATCTCTTCCAT
21962014 GACCCATCTCTTCCAT
1 GACCCATCTCTTCCAT
21962030 TGATGTCCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.44, G:0.06, T:0.31
Consensus pattern (16 bp):
GACCCATCTCTTCCAT
Found at i:21976776 original size:36 final size:35
Alignment explanation
Indices: 21976697--21976767 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 35
21976687 TGATTTAGCA
* *
21976697 AACAATAAGTATTAAAAGAAACGAAAATTTTTAACT
1 AACAATAAGTATTAAAAGAAACGAAAA-TATTAAAT
*
21976733 AACAATAAGTGTTAAAAGAAACGAAAA-ATTAAAT
1 AACAATAAGTATTAAAAGAAACGAAAATATTAAAT
21976767 A
1 A
21976768 GAAGAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
34 6 0.19
36 26 0.81
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.24
Consensus pattern (35 bp):
AACAATAAGTATTAAAAGAAACGAAAATATTAAAT
Found at i:21982231 original size:74 final size:75
Alignment explanation
Indices: 21982110--21982258 Score: 273
Period size: 74 Copynumber: 2.0 Consensus size: 75
21982100 AATTAGTTGT
*
21982110 GTAGTTAATTAGATTTCGGTTAAGTGAATTTGCATGAATTAAGAATTGTT-TTGTATAAGGACTA
1 GTAGTTAATTAGATTTCGGTTAAGTGAATTTGCATGAATTAAGAATTGTTATTGTATAAGAACTA
*
21982174 AACTGTGTAC
66 AACCGTGTAC
21982184 GTAGTTAATTAGATTTCGGTTAAGTGAATTTGCATGAATTAAGAATTGTTATTGTATAAGAACTA
1 GTAGTTAATTAGATTTCGGTTAAGTGAATTTGCATGAATTAAGAATTGTTATTGTATAAGAACTA
21982249 AACCGTGTAC
66 AACCGTGTAC
21982259 AGGATAAAAG
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 50 0.69
75 22 0.31
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (75 bp):
GTAGTTAATTAGATTTCGGTTAAGTGAATTTGCATGAATTAAGAATTGTTATTGTATAAGAACTA
AACCGTGTAC
Found at i:21982524 original size:15 final size:15
Alignment explanation
Indices: 21982499--21982533 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
21982489 ATTAAATAGG
21982499 AAAGA-AAAGAAAGA
1 AAAGAGAAAGAAAGA
*
21982513 AAAGAGAAAGAAATA
1 AAAGAGAAAGAAAGA
21982528 AAAGAG
1 AAAGAG
21982534 GAGAAAGACG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (15 bp):
AAAGAGAAAGAAAGA
Found at i:21984141 original size:21 final size:21
Alignment explanation
Indices: 21984117--21984160 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
21984107 AAATGTGGTG
21984117 ATGTTTACCTTTTGTGACGGC
1 ATGTTTACCTTTTGTGACGGC
21984138 ATGTTTACCTTTTGTGACGGC
1 ATGTTTACCTTTTGTGACGGC
21984159 AT
1 AT
21984161 ATATGAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.18, G:0.23, T:0.43
Consensus pattern (21 bp):
ATGTTTACCTTTTGTGACGGC
Found at i:21989458 original size:39 final size:39
Alignment explanation
Indices: 21989404--21989535 Score: 210
Period size: 39 Copynumber: 3.4 Consensus size: 39
21989394 TATATAAGAT
*
21989404 TGGAAATATATCCGGACATGAGGTCCGCAGGCTGTATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
21989443 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* * **
21989482 TGGAAATATATCCGGACTTGAGGTCCACAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
21989521 TGGAAAAATATCCGG
1 TGGAAATATATCCGG
21989536 GTTAAAGACC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:21989549 original size:78 final size:78
Alignment explanation
Indices: 21989404--21989553 Score: 185
Period size: 78 Copynumber: 1.9 Consensus size: 78
21989394 TATATAAGAT
* ** * * **
21989404 TGGAAATATATCCGGACATGAGGTCCGCAGGCTGTATGCTGGAAATATATCCGGACATGAGGTCC
1 TGGAAATATATCCGGACATGAGGTCCACAGGCTACATGCTGGAAAAATATCCGGACATAAGACCC
21989469 GCAGGCTATATGC
66 GCAGGCTATATGC
* * **
21989482 TGGAAATATATCCGGACTTGAGGTCCACAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACC
1 TGGAAATATATCCGGACATGAGGTCCACAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACC
21989546 CGCAGGCT
65 CGCAGGCT
21989554 TACGCTAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 1 0.02
78 59 0.98
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (78 bp):
TGGAAATATATCCGGACATGAGGTCCACAGGCTACATGCTGGAAAAATATCCGGACATAAGACCC
GCAGGCTATATGC
Found at i:21993213 original size:11 final size:11
Alignment explanation
Indices: 21993197--21993239 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
21993187 ACCTCGTGAA
21993197 AATATATTAAT
1 AATATATTAAT
*
21993208 AATATATAAAT
1 AATATATTAAT
21993219 -A-ATATTAAT
1 AATATATTAAT
*
21993228 AATATAATAAT
1 AATATATTAAT
21993239 A
1 A
21993240 TAGAAAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
11 18 0.67
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATTAAT
Found at i:21993239 original size:20 final size:20
Alignment explanation
Indices: 21993196--21993233 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
21993186 AACCTCGTGA
21993196 AAAT-ATATTAATAATATAT
1 AAATAATATTAATAATATAT
21993215 AAATAATATTAATAATATA
1 AAATAATATTAATAATATA
21993234 ATAATATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAATAATATTAATAATATAT
Found at i:22000882 original size:25 final size:25
Alignment explanation
Indices: 22000853--22000905 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
22000843 TACCAATTAG
*
22000853 ACCGAAACCATCTACATTTAAAACT
1 ACCGAAACCAACTACATTTAAAACT
22000878 ACCGAAACCAACTACATTTAAAACT
1 ACCGAAACCAACTACATTTAAAACT
22000903 ACC
1 ACC
22000906 ATACCATTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.45, C:0.30, G:0.04, T:0.21
Consensus pattern (25 bp):
ACCGAAACCAACTACATTTAAAACT
Found at i:22015115 original size:37 final size:37
Alignment explanation
Indices: 22015061--22015153 Score: 168
Period size: 37 Copynumber: 2.5 Consensus size: 37
22015051 TATTATAATT
22015061 CCGATGAGTGTTGGGCACACATTTTATTTTGGTTATG
1 CCGATGAGTGTTGGGCACACATTTTATTTTGGTTATG
*
22015098 CCGGTGAGTGTTGGGCACACATTTTATTTTGGTTATG
1 CCGATGAGTGTTGGGCACACATTTTATTTTGGTTATG
*
22015135 CCGATGAGCGTTGGGCACA
1 CCGATGAGTGTTGGGCACA
22015154 AGTTATACTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.18, C:0.16, G:0.30, T:0.35
Consensus pattern (37 bp):
CCGATGAGTGTTGGGCACACATTTTATTTTGGTTATG
Found at i:22023258 original size:15 final size:15
Alignment explanation
Indices: 22023238--22023267 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22023228 CATTATTAGA
22023238 TCTATTTTTGTTTGG
1 TCTATTTTTGTTTGG
22023253 TCTATTTTTGTTTGG
1 TCTATTTTTGTTTGG
22023268 ACATAGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.20, T:0.67
Consensus pattern (15 bp):
TCTATTTTTGTTTGG
Found at i:22023306 original size:24 final size:24
Alignment explanation
Indices: 22023279--22023325 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
22023269 CATAGATATG
22023279 GTTGCTTTCACACCTCGCTTTCTT
1 GTTGCTTTCACACCTCGCTTTCTT
22023303 GTTGCTTTCACACCTCGCTTTCT
1 GTTGCTTTCACACCTCGCTTTCT
22023326 CATGTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.09, C:0.34, G:0.13, T:0.45
Consensus pattern (24 bp):
GTTGCTTTCACACCTCGCTTTCTT
Found at i:22027324 original size:25 final size:25
Alignment explanation
Indices: 22027290--22027340 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
22027280 TTCCTTATAA
**
22027290 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
22027315 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
22027340 A
1 A
22027341 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:22027339 original size:12 final size:12
Alignment explanation
Indices: 22027293--22027340 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
22027283 CTTATAAACT
22027293 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
22027305 TTCTATTAGGACT
1 TTAAATTAGGA-A
22027318 TTAAATTAGGAA
1 TTAAATTAGGAA
*
22027330 TTAGATTAGGA
1 TTAAATTAGGA
22027341 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:22030441 original size:25 final size:25
Alignment explanation
Indices: 22030407--22030457 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
22030397 TTCCTTATAA
**
22030407 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
22030432 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
22030457 A
1 A
22030458 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Done.