Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 76 of 316
Found at i:22718328 original size:15 final size:16
Alignment explanation
Indices: 22718289--22718329 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
22718279 GGACAAAACT
22718289 TTGTTCTTTTCACCCC
1 TTGTTCTTTTCACCCC
22718305 TTGTTCTTTTCACCCC
1 TTGTTCTTTTCACCCC
22718321 TT-TTCTTTT
1 TTGTTCTTTT
22718330 AATAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 7 0.28
16 18 0.72
ACGTcount: A:0.05, C:0.32, G:0.05, T:0.59
Consensus pattern (16 bp):
TTGTTCTTTTCACCCC
Found at i:22718423 original size:26 final size:26
Alignment explanation
Indices: 22718387--22718468 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
22718377 TGAAATTCCC
*
22718387 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
22718413 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22718439 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22718465 ATCA
1 ATCA
22718469 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:22720050 original size:42 final size:43
Alignment explanation
Indices: 22719941--22720059 Score: 156
Period size: 41 Copynumber: 2.9 Consensus size: 43
22719931 CGTATAAAAT
* * *
22719941 ACCGGCA-CAGAGCCTGCTAGGTAATAAACCTGAT-TCAAGAC
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
* *
22719982 ACCGGCAT-AAAGCATGCTAGGAAATAAGCCTGATATC-ATAC
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
*
22720023 ACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGATAT
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATAT
22720060 ATCACTGTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 40 0.59
42 28 0.41
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.18
Consensus pattern (43 bp):
ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
Found at i:22720195 original size:27 final size:29
Alignment explanation
Indices: 22720156--22720213 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
22720146 CGGCTATAAC
*
22720156 CATAGAAATTCATACA-ATT-AAATTCAA
1 CATAGAAAATCATACACATTCAAATTCAA
*
22720183 CATATAAAATCATACACATTCAAATTCAA
1 CATAGAAAATCATACACATTCAAATTCAA
22720212 CA
1 CA
22720214 ACGTTTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 14 0.52
28 3 0.11
29 10 0.37
ACGTcount: A:0.52, C:0.19, G:0.02, T:0.28
Consensus pattern (29 bp):
CATAGAAAATCATACACATTCAAATTCAA
Found at i:22724890 original size:43 final size:42
Alignment explanation
Indices: 22724834--22724948 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 42
22724824 TATCACATAT
* * *
22724834 CGATGCCACTGTCCAAGATAGGGTCTTACACGA-AATCATAATA
1 CGATGCCAATGTCC-AGACACGGTCTTACAC-ATAATCATAATA
* *
22724877 CGATACCAATGTCCCAGACATGGTCTTACACATAATCATAATA
1 CGATGCCAATGT-CCAGACACGGTCTTACACATAATCATAATA
* *
22724920 CAATGCTAATGTCCAGACACGGTCTTACA
1 CGATGCCAATGTCCAGACACGGTCTTACA
22724949 TGTAATCACA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 17 0.27
43 43 0.69
44 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
CGATGCCAATGTCCAGACACGGTCTTACACATAATCATAATA
Found at i:22724955 original size:42 final size:43
Alignment explanation
Indices: 22724855--22724956 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
22724845 TCCAAGATAG
* * *
22724855 GGTCTTACACGAAATCATAATACGATACCAATGTCCCAGACAT
1 GGTCTTACACGTAATCATAATACAATACCAATGTCCCAGACAC
* * *
22724898 GGTCTTACACATAATCATAATACAATGCTAATGT-CCAGACAC
1 GGTCTTACACGTAATCATAATACAATACCAATGTCCCAGACAC
*
22724940 GGTCTTACATGTAATCA
1 GGTCTTACACGTAATCA
22724957 CATCTTGATA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 22 0.43
43 29 0.57
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCATAATACAATACCAATGTCCCAGACAC
Found at i:22727315 original size:22 final size:22
Alignment explanation
Indices: 22727287--22727331 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
22727277 ATCAATAACG
22727287 ATTAATTTTTA-AGGTTCTTATA
1 ATTAATTTTTACA-GTTCTTATA
22727309 ATTAATTTTTACAGTTCTTATA
1 ATTAATTTTTACAGTTCTTATA
22727331 A
1 A
22727332 CTTAGTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (22 bp):
ATTAATTTTTACAGTTCTTATA
Found at i:22727551 original size:20 final size:21
Alignment explanation
Indices: 22727506--22727553 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
22727496 TGAGGTTCGG
*
22727506 GGTTTG-GTTTCGAGGTTTAA
1 GGTTTGAGTTTAGAGGTTTAA
**
22727526 AATTTGAGTTTAG-GGTTTAA
1 GGTTTGAGTTTAGAGGTTTAA
22727546 GGTTTGAG
1 GGTTTGAG
22727554 GTTTGGCTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (21 bp):
GGTTTGAGTTTAGAGGTTTAA
Found at i:22729289 original size:3 final size:3
Alignment explanation
Indices: 22729277--22729315 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
22729267 TGAATAAAGC
22729277 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
22729316 CGATAATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:22729429 original size:3 final size:3
Alignment explanation
Indices: 22729415--22729444 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
22729405 AAGTATATAC
22729415 TAA TACA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TA
22729445 GCATCAGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:22732241 original size:17 final size:17
Alignment explanation
Indices: 22732199--22732241 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
22732189 CGGGCTAAAA
22732199 CAAACCCAATACAAACC
1 CAAACCCAATACAAACC
* *
22732216 CAAAACCAATCCAAACC
1 CAAACCCAATACAAACC
*
22732233 TAAACCCAA
1 CAAACCCAA
22732242 CTATCAGCCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.53, C:0.40, G:0.00, T:0.07
Consensus pattern (17 bp):
CAAACCCAATACAAACC
Found at i:22733419 original size:20 final size:20
Alignment explanation
Indices: 22733394--22733432 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22733384 TCCATGATTA
* *
22733394 TTATTAATATATTTTTATTC
1 TTATTAATACATTATTATTC
22733414 TTATTAATACATTATTATT
1 TTATTAATACATTATTATT
22733433 ATCTTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTAATACATTATTATTC
Found at i:22733572 original size:3 final size:3
Alignment explanation
Indices: 22733566--22733718 Score: 135
Period size: 3 Copynumber: 52.3 Consensus size: 3
22733556 ACATCATCGC
*
22733566 TAT TAT TA- AAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
22733612 TAT TAT TAT TAT TAT TAT TAT TAT TAT TACC T-T TA- TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * *
22733656 T-T GTAT TAA TA- TAT TAT TAGT T-T TAT TAAT GTAT TGT TAT TTT TAT
1 TAT -TAT TAT TAT TAT TAT TA-T TAT TAT T-AT -TAT TAT TAT TAT TAT
*
22733702 T-T TAT T-T CAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
22733719 GTTTCATCCT
Statistics
Matches: 123, Mismatches: 13, Indels: 28
0.75 0.08 0.17
Matches are distributed among these distances:
2 14 0.11
3 100 0.81
4 8 0.07
5 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:22733668 original size:20 final size:20
Alignment explanation
Indices: 22733645--22733690 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
22733635 TTATTACCTT
22733645 TATATTACTA-TTTGTATTAA
1 TATATTACTAGTTT-TATTAA
*
22733665 TATATTATTAGTTTTATTAA
1 TATATTACTAGTTTTATTAA
*
22733685 TGTATT
1 TATATT
22733691 GTTATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (20 bp):
TATATTACTAGTTTTATTAA
Found at i:22733754 original size:23 final size:22
Alignment explanation
Indices: 22733711--22733755 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
22733701 TTTTATTTCA
*
22733711 TTATTATTGTTTCATCCTTATT
1 TTATTATTGTTTCATCATTATT
* *
22733733 TTATTTTTGTCTTCATTATTATT
1 TTATTATTGT-TTCATCATTATT
22733756 GCATTATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.18, C:0.11, G:0.04, T:0.67
Consensus pattern (22 bp):
TTATTATTGTTTCATCATTATT
Found at i:22737893 original size:43 final size:42
Alignment explanation
Indices: 22737798--22737907 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
22737788 ATCAATATGT
* * *
22737798 GATTACATGTAAGACCATGTCTGAGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTG-GACATTGGCATCGTAATGA
*
22737841 GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCT-GGACATTGGCATCG-TAATGA
* *
22737884 GATTTCGTGTAAGACCCTGTCTGG
1 GATTACGTGTAAGACCATGTCTGG
22737908 GATAGTGGCA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.03
43 53 0.90
44 4 0.07
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTACGTGTAAGACCATGTCTGGACATTGGCATCGTAATGA
Found at i:22738629 original size:43 final size:43
Alignment explanation
Indices: 22738580--22738697 Score: 218
Period size: 43 Copynumber: 2.7 Consensus size: 43
22738570 TGAAAAAAAT
*
22738580 GCCGCTAAAAGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
22738623 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
*
22738666 GCCACTAAAGGTCAAGGCTTTTAGCGGCGTTT
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTT
22738698 TTTCTACAAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
Found at i:22744732 original size:9 final size:9
Alignment explanation
Indices: 22744718--22744845 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
22744708 ATGTATTCGT
22744718 TAAGTTATG
1 TAAGTTATG
22744727 TAAGTTGTTATG
1 TAA---GTTATG
*
22744739 TACGTTATG
1 TAAGTTATG
*
22744748 TGAGTTATG
1 TAAGTTATG
*
22744757 TAAATTATG
1 TAAGTTATG
22744766 TAAGTTATG
1 TAAGTTATG
*
22744775 TGAGTTATG
1 TAAGTTATG
22744784 TAAGTTGTTATG
1 TAA---GTTATG
*
22744796 TAAATTATG
1 TAAGTTATG
*
22744805 TAAGTTATA
1 TAAGTTATG
*
22744814 TGAGTTATG
1 TAAGTTATG
22744823 TAAGTTATG
1 TAAGTTATG
* *
22744832 TAATTTATT
1 TAAGTTATG
22744841 TAAGT
1 TAAGT
22744846 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:22744794 original size:39 final size:39
Alignment explanation
Indices: 22744751--22744828 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
22744741 CGTTATGTGA
*
22744751 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
22744790 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
22744829 ATGTAATTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (39 bp):
GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
Found at i:22744845 original size:57 final size:57
Alignment explanation
Indices: 22744718--22744845 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
22744708 ATGTATTCGT
** * *
22744718 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
22744775 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
22744832 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
22744846 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:22745575 original size:240 final size:240
Alignment explanation
Indices: 22744964--22745638 Score: 1217
Period size: 241 Copynumber: 2.8 Consensus size: 240
22744954 TGAATATAGT
* *
22744964 AATTTTTAAGATTCATTATACGTAGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
1 AATTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
22745029 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
66 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
* * * *
22745094 TGTTGGAGAGAAAGTCAGCAATTGTTGTAATTTTAATGGTCAAGCAAGCTACATGGTAATAAATA
131 GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
22745159 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
22745204 AATTTTTTAAGATTCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AA-TTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
22745269 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
65 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
22745334 AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
130 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
22745399 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
195 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
* *
22745445 AATTTTTAAGATTCATCATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGAT
1 AATTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
*
22745510 CGATATAAGGCAACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
66 CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
22745575 GGTTGGAGAGAAGGTCAGCTATATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGT-ATAAA
131 GGTTGGAGAGAAGGTCAGC--TATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
22745639 ATTAATTCAT
Statistics
Matches: 419, Mismatches: 13, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
240 144 0.34
241 237 0.57
242 38 0.09
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (240 bp):
AATTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCT
CGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAAA
GGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATA
TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:22748938 original size:18 final size:19
Alignment explanation
Indices: 22748917--22748952 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22748907 TTTGAAATTC
22748917 TTCATCTCT-CAATTCTAT
1 TTCATCTCTGCAATTCTAT
*
22748935 TTCATCTTTGCAATTCTA
1 TTCATCTCTGCAATTCTA
22748953 CAAAAAGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCATCTCTGCAATTCTAT
Found at i:22749628 original size:40 final size:39
Alignment explanation
Indices: 22749543--22749628 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 39
22749533 CAAAAGCGTT
*
22749543 GCTAATTCTCAGTTTTTGCGGCGTTTTTTATGAAAGCGCC
1 GCTAATTCTCAGTTTTTGCGGCGTTTTTTA-GAAAACGCC
* *
22749583 ACTAATTCTCTA-TTTTTAGTGGCGTTTTTGTA-AAAACGCC
1 GCTAATTCTC-AGTTTTT-GCGGCGTTTTT-TAGAAAACGCC
22749623 GCTAAT
1 GCTAAT
22749629 GCCTCTGCAC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
40 26 0.67
41 11 0.28
42 2 0.05
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (39 bp):
GCTAATTCTCAGTTTTTGCGGCGTTTTTTAGAAAACGCC
Found at i:22750152 original size:13 final size:13
Alignment explanation
Indices: 22750116--22750154 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
22750106 TGCATCTTAA
*
22750116 AATTAAAGTACTT
1 AATTAAAGTATTT
22750129 AATTAAAGTATTT
1 AATTAAAGTATTT
22750142 AATTAAAGTATTT
1 AATTAAAGTATTT
22750155 TAAATTATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (13 bp):
AATTAAAGTATTT
Found at i:22750733 original size:21 final size:21
Alignment explanation
Indices: 22750686--22750748 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
22750676 TATGGATTAG
* * *
22750686 TGTTTATGGTTTATGTTTTAA
1 TGTTTAAGGTTTAAGGTTTAA
** *
22750707 AATTTAGGGTTTAAGGTTTAA
1 TGTTTAAGGTTTAAGGTTTAA
*
22750728 TGTTTAAGATTTAAGGGTTTA
1 TGTTTAAGGTTTAA-GGTTTA
22750749 CAAAAAGCCA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
21 26 0.81
22 6 0.19
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (21 bp):
TGTTTAAGGTTTAAGGTTTAA
Found at i:22751083 original size:41 final size:40
Alignment explanation
Indices: 22751038--22751370 Score: 296
Period size: 41 Copynumber: 8.2 Consensus size: 40
22751028 AACTTTTTGC
* *
22751038 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTGTTTAGT
1 GGCGTTTGGA-TAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * * *
22751079 GGCGTTTTGGATAGAAACGCCACAATTGAGCAGTGTTTAGT
1 GGCG-TTTGGATAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * *
22751120 GGCGTTTTGGATAAAAACACCACAATTGATTAGTTTTTAGT
1 GGCG-TTTGGATAAAAACGCCGCTATTGATCAGTTTTTAGT
22751161 GGCGTTTGGGATAAAAACGCCG-TAATTGATCAGTTTTTAGT
1 GGCGTTT-GGATAAAAACGCCGCT-ATTGATCAGTTTTTAGT
* * * * * *
22751202 GGCATTTGGGATTAAAATGCCTCTATTGATAAGCTTTTAGT
1 GGCGTTT-GGATAAAAACGCCGCTATTGATCAGTTTTTAGT
*
22751243 GGCGTTTGG-TGAAAAACGCCGC-ATTGACCAGTTTTTAGT
1 GGCGTTTGGAT-AAAAACGCCGCTATTGATCAGTTTTTAGT
** *
22751282 GGCGTTTTGGCCAAAAACGCCGCTATTGA-CTAGTTTTTAGC
1 GGCG-TTTGGATAAAAACGCCGCTATTGATC-AGTTTTTAGT
* ** * * * *
22751323 GGCGTGTTTGCCAAAAATGCCGCTATAGTTTAGTTTTTAGT
1 GGCGT-TTGGATAAAAACGCCGCTATTGATCAGTTTTTAGT
22751364 GGCGTTT
1 GGCGTTT
22751371 CAGACAAACG
Statistics
Matches: 246, Mismatches: 35, Indels: 23
0.81 0.12 0.08
Matches are distributed among these distances:
39 19 0.08
40 33 0.13
41 187 0.76
42 7 0.03
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (40 bp):
GGCGTTTGGATAAAAACGCCGCTATTGATCAGTTTTTAGT
Found at i:22751340 original size:121 final size:120
Alignment explanation
Indices: 22751038--22751370 Score: 327
Period size: 121 Copynumber: 2.7 Consensus size: 120
22751028 AACTTTTTGC
* *
22751038 GGCG-TTTGGACCAAAAACGCCGCTATTGATCAGTGTTTAGTGGCGTTTTGGATAGAAACGCCAC
1 GGCGTTTTGG-CCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGATA-AAATGCCAC
* ** **
22751102 AATTGAGCAGTGTTTAGTGGCGTTTTGGATAAAAACACCACAATTGATTAGTTTTTAGT
64 TATTGATAAGT-TTTAGTGGCG-TTTGGATAAAAACACCACAATTGACCAGTTTTTAGT
* ** * * *
22751161 GGCGTTTGGGATAAAAACGCCG-TAATTGATCAGTTTTTAGTGGCATTTGGGATTAAAATGCCTC
1 GGCGTTTTGGCCAAAAACGCCGCT-ATTGATCAGTTTTTAGTGGCGTTTTGGA-TAAAATGCCAC
* *
22751225 TATTGATAAGCTTTTAGTGGCGTTTGG-TGAAAAACGCCGC-ATTGACCAGTTTTTAGT
64 TATTGATAAG-TTTTAGTGGCGTTTGGAT-AAAAACACCACAATTGACCAGTTTTTAGT
* * *
22751282 GGCGTTTTGGCCAAAAACGCCGCTATTGA-CTAGTTTTTAGCGGCGTGTTTGCCA-AAAATGCCG
1 GGCGTTTTGGCCAAAAACGCCGCTATTGATC-AGTTTTTAGTGGCGT-TTTG-GATAAAATGCCA
* * *
22751345 CTATAGTTTAGTTTTTAGTGGCGTTT
63 CTATTGATAAG-TTTTAGTGGCGTTT
22751371 CAGACAAACG
Statistics
Matches: 174, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
120 1 0.01
121 83 0.48
122 19 0.11
123 64 0.37
124 7 0.04
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (120 bp):
GGCGTTTTGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTGGATAAAATGCCACTA
TTGATAAGTTTTAGTGGCGTTTGGATAAAAACACCACAATTGACCAGTTTTTAGT
Found at i:22753714 original size:27 final size:27
Alignment explanation
Indices: 22753695--22753896 Score: 206
Period size: 27 Copynumber: 7.5 Consensus size: 27
22753685 ATTACCAAAG
* *
22753695 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAAAATTACCATTT
*
22753722 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCAATTTACAAAATTACCATTT
* *
22753749 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCAATTTACAAAATTACCATTT
* *
22753776 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCAATTTACAAAATTACCATTT
* * * ***
22753803 TACCCTTAATTTATAGAATTATTGTTT
1 TACCCTCAATTTACAAAATTACCATTT
** * *
22753830 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAAAATTACCATTT
* * **
22753857 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCAATTTACAAAATTACCATTT
*
22753884 TACCCTCGATTTA
1 TACCCTCAATTTA
22753897 GTAAAATACC
Statistics
Matches: 154, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCATTT
Found at i:22753740 original size:54 final size:54
Alignment explanation
Indices: 22753668--22753896 Score: 278
Period size: 54 Copynumber: 4.2 Consensus size: 54
22753658 ATTACTAAAA
* ** ***
22753668 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
* *
22753722 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
* * * * * **
22753776 TACCCTCAATTTACAGAATTACTATTTTACCCTTAATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
* * * * *
22753830 TACCCTTGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
22753884 TACCCTCGATTTA
1 TACCCTCGATTTA
22753897 GTAAAATACC
Statistics
Matches: 151, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 151 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
Found at i:22753785 original size:81 final size:81
Alignment explanation
Indices: 22753695--22753896 Score: 296
Period size: 81 Copynumber: 2.5 Consensus size: 81
22753685 ATTACCAAAG
*
22753695 TACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
22753760 TACAAAATTACCGTTT
66 TACAAAATTACCGTTT
* ** * * *** *
22753776 TACCCTCAATTTACAGAATTACTATTTTACCCTTAATTTATAGAATTATTGTTTTACCCTTGATT
1 TACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
*
22753841 TACAGAATTACCGTTT
66 TACAAAATTACCGTTT
*
22753857 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTA
1 TACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTA
22753897 GTAAAATACC
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:22753989 original size:54 final size:53
Alignment explanation
Indices: 22753900--22754002 Score: 161
Period size: 54 Copynumber: 1.9 Consensus size: 53
22753890 CGATTTAGTA
*
22753900 AAATACCCCTATAGGGTAGAATCACCGAAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTATAGGGTAGAATCACCGAAACACCCTTGTAGGGTA-AAATACTG
* * *
22753954 AAATACCCCTGTAGGGTAGAATTACCGAGACACCCTTGTAGGGTAAAAT
1 AAATACCCCTATAGGGTAGAATCACCGAAACACCCTTGTAGGGTAAAAT
22754003 TACCATTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.09
54 41 0.91
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (53 bp):
AAATACCCCTATAGGGTAGAATCACCGAAACACCCTTGTAGGGTAAAATACTG
Found at i:22754003 original size:27 final size:27
Alignment explanation
Indices: 22753900--22754006 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 27
22753890 CGATTTAGTA
* * * *
22753900 AAATACCCCTATAGGGTAGAATCACCG
1 AAATACCCTTGTAGGGTAAAATTACCG
*
22753927 AAATACCCTTGTAGGGTAGAAA-TACTG
1 AAATACCCTTGTAGGGTA-AAATTACCG
* *
22753954 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAAAATTACCG
* *
22753981 AGACACCCTTGTAGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAAAATTACC
22754007 ATTTTATCCC
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 2 0.03
27 62 0.94
28 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAAAATTACCG
Found at i:22754536 original size:6 final size:6
Alignment explanation
Indices: 22754527--22754614 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
22754517 TTGCATTCAC
* *
22754527 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* * *
22754577 ATTCTA ATTCTG ATTCTT ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
22754615 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:22754558 original size:25 final size:25
Alignment explanation
Indices: 22754530--22754593 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
22754520 CATTCACATT
*
22754530 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
* *
22754555 CTGATTCTGATTCTGTCACTTGATT
1 CTGATTCTGATTCTGTCACCTGATA
*
22754580 CTAATTCTGATTCT
1 CTGATTCTGATTCT
22754594 TATTTTGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:22755592 original size:163 final size:163
Alignment explanation
Indices: 22755306--22755619 Score: 425
Period size: 163 Copynumber: 1.9 Consensus size: 163
22755296 TGATGTTTGT
* * *
22755306 CATTCATTTAGTGTCTGCCCAAAAACATTGTCTTTAGATGGTCATCATGAGATCAGTTCTTTAGA
1 CATTCATTTAGTGTCCGCCCAAAAACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAGA
* **
22755371 TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTTAGAGTCTTGCCAC
66 TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTCAGAGTCTCACCAC
*
22755436 GAAGACATCCTTTTAACAGAGTTTGCCATAAGG
131 AAAGACATCCTTTTAACAGAGTTTGCCATAAGG
* * ** * * *
22755469 CATTCATTTGGTGTCCGCCTAAAGGCGTTGTCTTCAGTTGGTCATCATGAGATCCGTTCTTCAGA
1 CATTCATTTAGTGTCCGCCCAAAAACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAGA
** * *
22755534 TTCTGCCACGAAGGCATT-CTTTTCCAAAGATAGCTACAAA-AGTTTTTCTTTCAGAGTCTCACC
66 TTCCACCACGAAGGCATTCCTTTT-CAAAGATAGCTACAAAGA-CTTTCCTTTCAGAGTCTCACC
*
22755597 ACAAAGACATCCTTTTAATAGAG
129 ACAAAGACATCCTTTTAACAGAG
22755620 ATAGTCACAA
Statistics
Matches: 130, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
162 6 0.05
163 124 0.95
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (163 bp):
CATTCATTTAGTGTCCGCCCAAAAACATTGTCTTCAGATGGTCATCATGAGATCAGTTCTTCAGA
TTCCACCACGAAGGCATTCCTTTTCAAAGATAGCTACAAAGACTTTCCTTTCAGAGTCTCACCAC
AAAGACATCCTTTTAACAGAGTTTGCCATAAGG
Found at i:22755629 original size:29 final size:29
Alignment explanation
Indices: 22755595--22755974 Score: 332
Period size: 29 Copynumber: 13.3 Consensus size: 29
22755585 CAGAGTCTCA
22755595 CCACAAAGACATCCTTTTAATAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
* *
22755624 TCAC-AAGGCATTCC-TTTAACTA-AGATAG
1 CCACAAAGACA-TCCTTTTAA-TAGAGATAG
* * *
22755652 CCACAAAGGCATCCTCTTAATAGAGATAA
1 CCACAAAGACATCCTTTTAATAGAGATAG
* * *
22755681 CCACAAAGGCATCCTCTTAACAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
*
22755710 CCACAAAGGCATCCTTTTAATAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
* * *
22755739 CCATAAAGGCATCCTTTT--TCAGATATCA-
1 CCACAAAGACATCCTTTTAAT-AGAGAT-AG
* * * *
22755767 CCATAAAGACTTCCTTTTAACAGAGATCG
1 CCACAAAGACATCCTTTTAATAGAGATAG
* * *
22755796 TCACAAAGACTTCCTTTTAACAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
*
22755825 CCACAAAGACATCCCTTTAAT-GAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
*
22755853 CCACAAAGTCATCCTTTTAACT-GAGATAG
1 CCACAAAGACATCCTTTTAA-TAGAGATAG
** *
22755882 CCACAAACG-CATATTTTTAACAGAGATAG
1 CCACAAA-GACATCCTTTTAATAGAGATAG
* * * **
22755911 CCATAAAGACATCCTTTT--CAGATATCT
1 CCACAAAGACATCCTTTTAATAGAGATAG
* * *
22755938 CCACATAGACATCTTTTTAACAGAGATAG
1 CCACAAAGACATCCTTTTAATAGAGATAG
*
22755967 CCATAAAG
1 CCACAAAG
22755975 GTGTGCTTTT
Statistics
Matches: 293, Mismatches: 42, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.08
28 71 0.24
29 199 0.68
30 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.26
Consensus pattern (29 bp):
CCACAAAGACATCCTTTTAATAGAGATAG
Found at i:22755738 original size:115 final size:114
Alignment explanation
Indices: 22755595--22755969 Score: 382
Period size: 115 Copynumber: 3.3 Consensus size: 114
22755585 CAGAGTCTCA
*
22755595 CCACAAAGACATCCTTTTAATAGAGATAGTCACAAGGCATTCCTTTAACTAAGATAGCCACAAAG
1 CCACAAAGACATCCTTTTAATAGAGATAGCCACAAGGCA-TCCTTTAACTAAGATAGCCACAAAG
* * * *
22755660 GCATCCTCTTAATAGAGATAACCACAAAGGCATCCTCTTAACAGAGATAG
65 GCATCCTTTTAACAGAGATAGCCACAAAGACATCCTCTTAACAGAGATAG
* * * * * *
22755710 CCACAAAGGCATCCTTTTAATAGAGATAGCCATAAAGGCATCCTTT--TTCAGATATCACCATAA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCA-CAAGGCATCCTTTAACTAAGATA--GCCACAA
* * * * * *
22755773 AGACTTCCTTTTAACAGAGATCGTCACAAAGACTTCCTTTTAACAGAGATAG
63 AGGCATCCTTTTAACAGAGATAGCCACAAAGACATCCTCTTAACAGAGATAG
* * *
22755825 CCACAAAGACATCCCTTTAAT-GAGATAGCCACAAAGTCATCCTTTTAACTGAGATAGCCACAAA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCAC-AAGGCATCC-TTTAACTAAGATAGCCACAAA
* ** * * * **
22755889 CGCATATTTTTAACAGAGATAGCCATAAAGACATCCT-TT-TCAGATATCT
64 GGCATCCTTTTAACAGAGATAGCCACAAAGACATCCTCTTAACAGAGATAG
* * *
22755938 CCACATAGACATCTTTTTAACAGAGATAGCCA
1 CCACAAAGACATCCTTTTAATAGAGATAGCCA
22755970 TAAAGGTGTG
Statistics
Matches: 210, Mismatches: 42, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
113 29 0.14
114 30 0.14
115 139 0.66
116 6 0.03
117 6 0.03
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (114 bp):
CCACAAAGACATCCTTTTAATAGAGATAGCCACAAGGCATCCTTTAACTAAGATAGCCACAAAGG
CATCCTTTTAACAGAGATAGCCACAAAGACATCCTCTTAACAGAGATAG
Found at i:22755985 original size:86 final size:85
Alignment explanation
Indices: 22755582--22755975 Score: 402
Period size: 86 Copynumber: 4.6 Consensus size: 85
22755572 AAAGTTTTTC
* * *
22755582 TTTCAGAGTCTCACCACAAAGACATCCTTTTAATAGAGATAGTCAC-AAGGCATTCC-TTTAACT
1 TTTCAGA-TATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCA-TCCTTTTAAC-
* *
22755645 A-AGATAGCCACAAAGGCATCCT
63 AGAGATAGCCATAAAGACATCCT
* * * * *
22755667 CTTAAT-AGAGATAACCACAAAGGCATCCTCTTAACAGAGATAGCCACAAAGGCATCCTTTTAAT
1 -TT--TCAGATATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAAC
*
22755731 AGAGATAGCCATAAAGGCATCCTT
63 AGAGATAGCCATAAAGACATCC-T
* * * * * *
22755755 TTTCAGATATCACCATAAAGACTTCCTTTTAACAGAGATCGTCACAAAGACTTCCTTTTAACAGA
1 TTTCAGATATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGA
* *
22755820 GATAGCCACAAAGACATCCC
66 GATAGCCATAAAGACATCCT
* * * * * **
22755840 TTTAATGAGAT-AGCCACAAAGTCATCCTTTTAACTGAGATAGCCACAAACGCATATTTTTAACA
1 TTTCA-GATATCA-CCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACA
22755904 GAGATAGCCATAAAGACATCCT
64 GAGATAGCCATAAAGACATCCT
* * * *
22755926 TTTCAGATATCTCCACATAGACATCTTTTTAACAGAGATAGCCATAAAGG
1 TTTCAGATATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGG
22755976 TGTGCTTTTT
Statistics
Matches: 251, Mismatches: 47, Indels: 21
0.79 0.15 0.07
Matches are distributed among these distances:
85 42 0.17
86 172 0.69
87 35 0.14
88 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (85 bp):
TTTCAGATATCACCACAAAGACATCCTTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGA
GATAGCCATAAAGACATCCT
Found at i:22756405 original size:32 final size:32
Alignment explanation
Indices: 22756369--22756433 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
22756359 CTTAGGGACT
* *
22756369 CACTTGACTTACATCTTTAGCAGCTCTAAACA
1 CACTTAACTTACATCTTTAACAGCTCTAAACA
** *
22756401 CACTTAACTTATGTCTTTAACAGCTTTAAACA
1 CACTTAACTTACATCTTTAACAGCTCTAAACA
22756433 C
1 C
22756434 CAGATCCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (32 bp):
CACTTAACTTACATCTTTAACAGCTCTAAACA
Found at i:22758150 original size:42 final size:42
Alignment explanation
Indices: 22758034--22758182 Score: 144
Period size: 42 Copynumber: 3.6 Consensus size: 42
22758024 AAACCAATGT
* * *
22758034 CATA-TCCCAGATATGGTCTTACATGGAATCTTATATTGATGC
1 CATAGTCCCAGATATGGTCTTACA-CGAATCTCATATCGATGC
* * *
22758076 CAATAG-CCTAGCTATGGTCTTACACGATTCTCATATCGATGC
1 C-ATAGTCCCAGATATGGTCTTACACGAATCTCATATCGATGC
* *
22758118 CAT-GTCCCAGAAATGGTCTTACACGAAATCTCATAACGATGC
1 CATAGTCCCAGATATGGTCTTACACG-AATCTCATATCGATGC
* * *
22758160 CATA-TCTCAAATATGTTCTTACA
1 CATAGTCCCAGATATGGTCTTACA
22758183 TGTAAACTCA
Statistics
Matches: 87, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
40 1 0.01
41 19 0.22
42 48 0.55
43 19 0.22
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
CATAGTCCCAGATATGGTCTTACACGAATCTCATATCGATGC
Found at i:22768038 original size:21 final size:21
Alignment explanation
Indices: 22768014--22768054 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22768004 TCCCGAACCC
*
22768014 TAAAATATAAACTCTAAGCCA
1 TAAAACATAAACTCTAAGCCA
*
22768035 TAAACCATAAACTCTAAGCC
1 TAAAACATAAACTCTAAGCC
22768055 CTAAGCCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.24, G:0.05, T:0.22
Consensus pattern (21 bp):
TAAAACATAAACTCTAAGCCA
Found at i:22768045 original size:28 final size:28
Alignment explanation
Indices: 22768009--22768107 Score: 83
Period size: 28 Copynumber: 3.5 Consensus size: 28
22767999 ATAACTCCCG
* *
22768009 AACCCTAAAATATAAACTCTAAGCCATA
1 AACCATAAAATATAAACCCTAAGCCATA
* * * *
22768037 AACCATAAACTCTAAGCCCTAAGCCTTA
1 AACCATAAAATATAAACCCTAAGCCATA
* * * *
22768065 AACCATAAAACACTAGACCCTAAACTAT-
1 AACCATAAAATA-TAAACCCTAAGCCATA
*
22768093 AACCATAAACTATAA
1 AACCATAAAATATAA
22768108 TGATAATTTT
Statistics
Matches: 53, Mismatches: 17, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
27 2 0.04
28 41 0.77
29 10 0.19
ACGTcount: A:0.48, C:0.27, G:0.04, T:0.20
Consensus pattern (28 bp):
AACCATAAAATATAAACCCTAAGCCATA
Found at i:22769570 original size:23 final size:23
Alignment explanation
Indices: 22769539--22769582 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
22769529 TAAATATGTA
*
22769539 TAAATCTAAAAAATTCTTAAAAT
1 TAAACCTAAAAAATTCTTAAAAT
*
22769562 TAAACCTAAAAAATTTTTAAA
1 TAAACCTAAAAAATTCTTAAA
22769583 CTAACATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (23 bp):
TAAACCTAAAAAATTCTTAAAAT
Found at i:22772988 original size:23 final size:23
Alignment explanation
Indices: 22772920--22772994 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 23
22772910 CCTGATCAGT
** *
22772920 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
22772942 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
*
22772962 ATACAACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
22772985 ATACGACACA
1 ATACGACACA
22772995 TAAAGTGCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.02
21 33 0.75
22 1 0.02
23 9 0.20
ACGTcount: A:0.40, C:0.27, G:0.20, T:0.13
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:22773002 original size:23 final size:23
Alignment explanation
Indices: 22772920--22773006 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
22772910 CCTGATCAGT
*
22772920 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
22772942 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* * *
22772962 ATACAACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
22772985 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
22773007 TCAGTAAAGC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 33 0.62
22 1 0.02
23 18 0.34
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:22774490 original size:16 final size:17
Alignment explanation
Indices: 22774455--22774490 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
22774445 CCTAATTCTC
22774455 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
22774471 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
22774486 CCTTC
1 CCTTC
22774491 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:22775249 original size:60 final size:61
Alignment explanation
Indices: 22775155--22775280 Score: 148
Period size: 60 Copynumber: 2.1 Consensus size: 61
22775145 CCTAAACATA
*** * *
22775155 AAAAAAAATCAACAAATTTAGCCCCCATTGTTTACAAAA-TGTCATTTTAGT-TCTAATTCT
1 AAAAAAAATCAACAAATTTAGCCCCCAGCATTTACAAAAGTGTCAATTTAGTCT-TAACTCT
* * *
22775215 AAAAAAAGTCAATAAATTTAGCCCTCAGCATTTACAAAAGTTGTCAATTTAGTCTTAACTCT
1 AAAAAAAATCAACAAATTTAGCCCCCAGCATTTACAAAAG-TGTCAATTTAGTCTTAACTCT
22775277 AAAA
1 AAAA
22775281 TTAGAAAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
60 33 0.60
62 21 0.38
63 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (61 bp):
AAAAAAAATCAACAAATTTAGCCCCCAGCATTTACAAAAGTGTCAATTTAGTCTTAACTCT
Found at i:22782855 original size:41 final size:40
Alignment explanation
Indices: 22782794--22782991 Score: 247
Period size: 41 Copynumber: 4.9 Consensus size: 40
22782784 GTTTTATCAA
** *
22782794 AAAACGCCGCTAAAAA-AGAGCAACAGCGGCG-TTTTAGT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
* *
22782832 AAAAAACGCCACTAAAAACAGAGCATTAGCGGTGCTTTTGGT
1 --AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
* *
22782874 AAAATGCCGCTAAAAACCAGAGTATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
*
22782915 AAAACGCAGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
* *
22782956 AAAACGCCGCTAAAAACTTGAGCATTAGCAGCGCTT
1 AAAACGCCGCTAAAAAC-AGAGCATTAGCGGCGCTT
22782992 AAAGTCATAT
Statistics
Matches: 139, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
40 30 0.22
41 103 0.74
42 6 0.04
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
Found at i:22783194 original size:21 final size:21
Alignment explanation
Indices: 22783165--22783247 Score: 67
Period size: 21 Copynumber: 3.6 Consensus size: 21
22783155 TAGTTTAAGG
*
22783165 TTTATGGTTTAAGATATATGA
1 TTTAGGGTTTAAGATATATGA
*
22783186 TTTAGGGTTTAAGCAGGTTTATGA
1 TTTAGGGTTTAAG-A--TATATGA
* *
22783210 GTTAACTATGGTTTAAGATATATGG
1 -TT---TAGGGTTTAAGATATATGA
22783235 TTTAGGGTTTAAG
1 TTTAGGGTTTAAG
22783248 GTTTAGGAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
21 22 0.45
22 1 0.02
24 8 0.16
25 7 0.14
27 1 0.02
28 10 0.20
ACGTcount: A:0.29, C:0.02, G:0.25, T:0.43
Consensus pattern (21 bp):
TTTAGGGTTTAAGATATATGA
Found at i:22783225 original size:49 final size:46
Alignment explanation
Indices: 22783167--22783263 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 46
22783157 GTTTAAGGTT
*
22783167 TATGGTTTAAGATATATGATTTAGGGTTTAAGCAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATGATTTAGGGTTT-A--AGGTTTAGGAGTTAAC
*
22783216 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
22783262 TA
1 TA
22783264 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
46 17 0.37
48 1 0.02
49 28 0.61
ACGTcount: A:0.30, C:0.03, G:0.26, T:0.41
Consensus pattern (46 bp):
TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:22787526 original size:43 final size:43
Alignment explanation
Indices: 22787478--22787791 Score: 344
Period size: 43 Copynumber: 7.3 Consensus size: 43
22787468 TTTCATGACC
*
22787478 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGGCT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
* * *
22787521 TTTAGCGACGTTTGTGGGAAAAGCGTCGTTAAAGGTCGCGACTT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGAC-T
* * * * * ** *
22787565 TTTAGTGGCATTTGTGGGAAAAGCG-TGCTAAAAGTTGCGATT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
* * *
22787607 TTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGC-
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCA-CGACT
* * *
22787650 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCGCAATT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
* * * * *
22787693 TTTAGCGGCGTTTGTGAGAAAAGTGCCGTTAAAGGTCATGGCC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
* * * * *
22787736 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGCCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
22787779 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
22787792 TTTTAAAATA
Statistics
Matches: 224, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
42 23 0.10
43 177 0.79
44 24 0.11
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGACT
Found at i:22787740 original size:129 final size:129
Alignment explanation
Indices: 22787470--22787791 Score: 400
Period size: 129 Copynumber: 2.5 Consensus size: 129
22787460 TTTTAAAATT
* * *
22787470 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCA-CGGCTTTTAGCGACGTTT
1 TCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGGC-TTTAGCGGCGTTT
* * * * *
22787534 GTGGGAAAAGCGTCGTTAAAGGTCGCGACTTTTTAGTGGCATTTGTGGGAAAAGCGTGCTAAAAG
65 GTGGGAAAAGCGCCGTTAAAGGTCGCGAATTTTTAGCGGCATTTGTGAGAAAAGCGCGCTAAAAG
** *
22787599 T--TGCGATTTTTAGCGGCGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTT
1 TCATG-G-CCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTT
* * *
22787662 TGTGGGAAAAGCGCCGTTAAAGGTCGC-AATTTTTAGCGGCGTTTGTGAGAAAAGTGCCGTTAAA
64 TGTGGGAAAAGCGCCGTTAAAGGTCGCGAATTTTTAGCGGCATTTGTGAGAAAAGCG-CGCTAAA
*
22787726 GG
128 AG
* * * **
22787728 TCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGCCATGACCTTTAGCGGCGTTT
1 TCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTTT
22787792 TTTTAAAATA
Statistics
Matches: 164, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
127 2 0.01
128 24 0.15
129 132 0.80
130 4 0.02
131 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (129 bp):
TCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGGCTTTAGCGGCGTTTG
TGGGAAAAGCGCCGTTAAAGGTCGCGAATTTTTAGCGGCATTTGTGAGAAAAGCGCGCTAAAAG
Found at i:22787769 original size:86 final size:86
Alignment explanation
Indices: 22787470--22787770 Score: 388
Period size: 86 Copynumber: 3.5 Consensus size: 86
22787460 TTTTAAAATT
* * ** *
22787470 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCACGGCTTTTAGCGACGTTTG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGATTTTTAGCGGCGTTTG
* *
22787535 TGGGAAAAGCGTCGTTAAAGG
66 TGAGAAAAGCGCCGTTAAAGG
** * * * * * *
22787556 TCGCGACTTTTTAGTGGCATTTGTGGGAAAAGCG-TGCTAAAAGTTGCGATTTTTAGCGGCGTTT
1 TCATGAC-CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGATTTTTAGCGGCGTTT
22787620 GTGAGAAAAGCGCCGTTAAAGG
65 GTGAGAAAAGCGCCGTTAAAGG
** * *
22787642 TCATGGGCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCGCAATTTTTAGCGGCGTTTG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGATTTTTAGCGGCGTTTG
*
22787707 TGAGAAAAGTGCCGTTAAAGG
66 TGAGAAAAGCGCCGTTAAAGG
* *
22787728 TCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
22787771 CCATGACCTT
Statistics
Matches: 182, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
85 23 0.13
86 136 0.75
87 23 0.13
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.28
Consensus pattern (86 bp):
TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCGATTTTTAGCGGCGTTTG
TGAGAAAAGCGCCGTTAAAGG
Found at i:22788498 original size:21 final size:21
Alignment explanation
Indices: 22788473--22788540 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
22788463 ATTCAAAAGT
22788473 TATAAAAATTAAAAAAATCAA
1 TATAAAAATTAAAAAAATCAA
* *
22788494 AATAAAAAATAAAAAAAT--A
1 TATAAAAATTAAAAAAATCAA
* *
22788513 TATACAAATTCAAAAAA-CAA
1 TATAAAAATTAAAAAAATCAA
22788533 TATAAAAA
1 TATAAAAA
22788541 ATATATAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
19 14 0.37
20 8 0.21
21 16 0.42
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (21 bp):
TATAAAAATTAAAAAAATCAA
Found at i:22788535 original size:20 final size:19
Alignment explanation
Indices: 22788473--22788540 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 19
22788463 ATTCAAAAGT
22788473 TATAAAAATTAAAAAAATCAA
1 TATAAAAATT-AAAAAA-CAA
* *
22788494 AATAAAAAATAAAAAA-ATA
1 TATAAAAATTAAAAAACA-A
*
22788513 TATACAAATTCAAAAAACAA
1 TATAAAAATT-AAAAAACAA
22788533 TATAAAAA
1 TATAAAAA
22788541 ATATATAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
18 1 0.03
19 8 0.21
20 20 0.53
21 9 0.24
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (19 bp):
TATAAAAATTAAAAAACAA
Found at i:22791615 original size:19 final size:20
Alignment explanation
Indices: 22791593--22791635 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
22791583 TTTATTTTAT
22791593 TTTTTACTT-TTTTTTC-CTA
1 TTTTTA-TTATTTTTTCACTA
22791612 TTTTTATTATTTTTTCACTA
1 TTTTTATTATTTTTTCACTA
22791632 TTTT
1 TTTT
22791636 GCTACGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.09
19 13 0.59
20 7 0.32
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTATTATTTTTTCACTA
Found at i:22792573 original size:40 final size:39
Alignment explanation
Indices: 22792491--22792579 Score: 126
Period size: 40 Copynumber: 2.3 Consensus size: 39
22792481 TAAAAATATA
* * *
22792491 TTTAATACAATAAAATATTTATTATATTTATTTGTGTTT
1 TTTAATATAATAAAATATTTATTATATTTATTGGTGTGT
22792530 TTTAAATATAATAAAATATTTATTATATTTA-TGGTAGTGT
1 TTT-AATATAATAAAATATTTATTATATTTATTGGT-GTGT
22792570 TTTAATATAA
1 TTTAATATAA
22792580 ATATTTTTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
39 13 0.29
40 32 0.71
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (39 bp):
TTTAATATAATAAAATATTTATTATATTTATTGGTGTGT
Found at i:22799316 original size:10 final size:10
Alignment explanation
Indices: 22799286--22799456 Score: 50
Period size: 10 Copynumber: 16.7 Consensus size: 10
22799276 TTCTCATAAT
*
22799286 AAATGATTAA
1 AAATTATTAA
* *
22799296 AAATCACTAA
1 AAATTATTAA
22799306 AAATTATTAAA
1 AAATTATT-AA
*
22799317 AAATTGA-TAT
1 AAATT-ATTAA
22799327 AAATT-TATAA
1 AAATTAT-TAA
* *
22799337 AAGTTATAAAA
1 AAATTAT-TAA
* *
22799348 AAATAACTTAT
1 AAATTA-TTAA
22799359 AAA-TATTATA
1 AAATTATTA-A
*
22799369 AAATT-CTAA
1 AAATTATTAA
*
22799378 TAAGTTA-T-A
1 -AAATTATTAA
*
22799387 AAATTTTATAA
1 AAATTAT-TAA
*
22799398 AAATTAATAA
1 AAATTATTAA
*
22799408 AATTTATTAA
1 AAATTATTAA
*
22799418 AAATTTTATAA
1 AAATTAT-TAA
22799429 AAATGTA-TAA
1 AAAT-TATTAA
* *
22799439 GAATTCTTAAA
1 AAATTATT-AA
22799450 AAATTAT
1 AAATTAT
22799457 AAACATTTAA
Statistics
Matches: 115, Mismatches: 29, Indels: 33
0.65 0.16 0.19
Matches are distributed among these distances:
8 4 0.03
9 6 0.05
10 61 0.53
11 41 0.36
12 3 0.03
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.37
Consensus pattern (10 bp):
AAATTATTAA
Found at i:22799345 original size:9 final size:8
Alignment explanation
Indices: 22799324--22799411 Score: 52
Period size: 9 Copynumber: 10.1 Consensus size: 8
22799314 AAAAAATTGA
*
22799324 TATAAATT
1 TATAAAAT
22799332 TATAAAAGT
1 TATAAAA-T
*
22799341 TATAAAAA
1 TATAAAAT
* *
22799349 AAT-AACT
1 TATAAAAT
22799356 TATAAATAT
1 TATAAA-AT
22799365 TATAAAAT
1 TATAAAAT
*
22799373 TCTAATAAGT
1 TATAA-AA-T
22799383 TATAAAATTT
1 TATAAAA--T
22799393 TATAAAAAT
1 TAT-AAAAT
22799402 TAATAAAAT
1 T-ATAAAAT
22799411 T
1 T
22799412 TATTAAAAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
7 4 0.06
8 16 0.26
9 27 0.44
10 11 0.18
11 4 0.06
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (8 bp):
TATAAAAT
Found at i:22799385 original size:27 final size:27
Alignment explanation
Indices: 22799340--22799407 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
22799330 TTTATAAAAG
22799340 TTATAAAAA--AATAACTTAT-AAATA
1 TTATAAAAATTAATAACTTATAAAATA
* * *
22799364 TTATAAAATTCTAATAAGTTATAAAATT
1 TTATAAAAAT-TAATAACTTATAAAATA
22799392 TTATAAAAATTAATAA
1 TTATAAAAATTAATAA
22799408 AATTTATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 8 0.22
27 15 0.42
28 13 0.36
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (27 bp):
TTATAAAAATTAATAACTTATAAAATA
Found at i:22799452 original size:22 final size:22
Alignment explanation
Indices: 22799401--22799452 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
22799391 TTTATAAAAA
* *
22799401 TTAATAAAATTTATTAAAAATT
1 TTAAAAAAATGTATTAAAAATT
* *
22799423 TTATAAAAATGTA-TAAGAATT
1 TTAAAAAAATGTATTAAAAATT
22799444 CTTAAAAAA
1 -TTAAAAAA
22799453 TTATAAACAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
TTAAAAAAATGTATTAAAAATT
Found at i:22799611 original size:11 final size:10
Alignment explanation
Indices: 22799587--22799677 Score: 55
Period size: 10 Copynumber: 9.2 Consensus size: 10
22799577 AAATATATTT
*
22799587 AAAATTCTATA
1 AAAATTATA-A
22799598 AAAATTAATAA
1 AAAATT-ATAA
*
22799609 AAACTTATAA
1 AAAATTATAA
*
22799619 ATAA-TAT-A
1 AAAATTATAA
*
22799627 AAAATTTTAA
1 AAAATTATAA
* *
22799637 TAAAGTATAA
1 AAAATTATAA
*
22799647 AAAATTGT-A
1 AAAATTATAA
22799656 AAAATTATTAA
1 AAAATTA-TAA
*
22799667 AAGA-TATAA
1 AAAATTATAA
22799676 AA
1 AA
22799678 TTTTTAATTT
Statistics
Matches: 61, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
8 4 0.07
9 17 0.28
10 22 0.36
11 16 0.26
12 2 0.03
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (10 bp):
AAAATTATAA
Found at i:22799617 original size:20 final size:18
Alignment explanation
Indices: 22799293--22799677 Score: 117
Period size: 20 Copynumber: 20.3 Consensus size: 18
22799283 AATAAATGAT
*
22799293 TAAAAATCACTAAAAATTA
1 TAAAAATTA-TAAAAATTA
*
22799312 TTAAAAAATTGATATAAATTTA
1 -T-AAAAATT-ATA-AAAATTA
*
22799334 TAAAAGTTATAAAAA--A
1 TAAAAATTATAAAAATTA
* * *
22799350 -ATAACTTATAAATATTA
1 TAAAAATTATAAAAATTA
* *
22799367 T-AAAATTCTAATAAGTTA
1 TAAAAATTATAA-AAATTA
*
22799385 TAAAATTTTATAAAAATTAA
1 TAAAA-ATTATAAAAATT-A
*
22799405 TAAAATTTATTAAAAATTTTA
1 TAAAAATTA-TAAAAA--TTA
* *
22799426 TAAAAATGTATAAGAATTCT
1 TAAAAAT-TATAAAAATT-A
*
22799446 TAAAAAATTATAAACATT-
1 T-AAAAATTATAAAAATTA
** *
22799464 TAAATTTTTTTAAAAA-TA
1 TAAA-AATTATAAAAATTA
* *
22799482 TTAAAATTGATATAAACTTA
1 TAAAAATT-ATA-AAAATTA
* *
22799502 TAAAAAGTATAAAAAAATCA
1 TAAAAA-T-TATAAAAATTA
*** *
22799522 TAATTTTTTTTAAAAATTA
1 TAA-AAATTATAAAAATTA
* * *
22799541 CAAAAATCA-AATAATTA
1 TAAAAATTATAAAAATTA
*
22799558 TAAAAA-AAT-AAAATTAA
1 TAAAAATTATAAAAATT-A
* *
22799575 TAAAATATATTTAAAATTCTA
1 TAAAA-AT-TATAAAAAT-TA
22799596 TAAAAATTAATAAAAACTTA
1 TAAAAATT-ATAAAAA-TTA
*
22799616 TAAATAA-TATAAAAATTT
1 TAAA-AATTATAAAAATTA
* *
22799634 TAATAAAGTATAAAAAATTG
1 TAA-AAATTAT-AAAAATTA
22799654 TAAAAATTATTAAAAGA-TA
1 TAAAAATTA-TAAAA-ATTA
22799673 TAAAA
1 TAAAA
22799678 TTTTTAATTT
Statistics
Matches: 268, Mismatches: 58, Indels: 79
0.66 0.14 0.20
Matches are distributed among these distances:
15 11 0.04
16 7 0.03
17 32 0.12
18 30 0.11
19 56 0.21
20 76 0.28
21 43 0.16
22 13 0.05
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (18 bp):
TAAAAATTATAAAAATTA
Found at i:22799667 original size:10 final size:10
Alignment explanation
Indices: 22799567--22799668 Score: 54
Period size: 10 Copynumber: 10.3 Consensus size: 10
22799557 ATAAAAAAAT
*
22799567 AAAATTAAT-
1 AAAATTATTA
*
22799576 AAAATATATTT
1 AAAAT-TATTA
*
22799587 AAAATTCTATA
1 AAAATTAT-TA
*
22799598 AAAATTAATA
1 AAAATTATTA
22799608 AAAACTTA-TA
1 AAAA-TTATTA
22799618 AATAA-TA-TA
1 AA-AATTATTA
22799627 AAAATT-TTA
1 AAAATTATTA
* *
22799636 ATAAAGTATAA
1 A-AAATTATTA
*
22799647 AAAATT-GTA
1 AAAATTATTA
22799656 AAAATTATTA
1 AAAATTATTA
22799666 AAA
1 AAA
22799669 GATATAAAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 19
0.71 0.11 0.19
Matches are distributed among these distances:
8 2 0.03
9 22 0.31
10 28 0.39
11 20 0.28
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAATTATTA
Found at i:22806544 original size:20 final size:20
Alignment explanation
Indices: 22806507--22806546 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
22806497 ATGTTTTCGT
* *
22806507 TATAATTTTTATCCTTTTTA
1 TATAATTTTAATCATTTTTA
*
22806527 TATAATTTTAATGATTTTTA
1 TATAATTTTAATCATTTTTA
22806547 ATTCCTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
TATAATTTTAATCATTTTTA
Found at i:22809929 original size:56 final size:56
Alignment explanation
Indices: 22809843--22809962 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
22809833 ACAAGGGATG
22809843 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
22809899 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
22809955 ATGGGCAA
1 ATGGGCAA
22809963 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:22811503 original size:47 final size:47
Alignment explanation
Indices: 22811378--22812110 Score: 1021
Period size: 47 Copynumber: 15.4 Consensus size: 47
22811368 CCAAGTCTGT
* *
22811378 ACATGATAGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 ACATG-TA-TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811427 A-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 ACA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811476 A-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 ACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811523 A-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 ACA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
22811572 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
22811619 A-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811668 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811715 ACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
22811762 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATAAATGTGA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811809 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811856 ACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811903 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22811950 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
22811997 ACATGCATATATGAGATAAAGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
22812044 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA
1 ACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GA
* *
22812092 A-GTGTATAAATGTGATAAG
1 ACATGTATATATGTGATAAG
22812111 TCCCGAAGGG
Statistics
Matches: 642, Mismatches: 33, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 493 0.77
48 4 0.01
49 140 0.22
50 4 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:22815598 original size:568 final size:568
Alignment explanation
Indices: 22814019--22819230 Score: 4493
Period size: 570 Copynumber: 9.2 Consensus size: 568
22814009 ACAAGTTACA
* * * ** * *
22814019 ATAGAGAAATCAATTTTGTTACATTGTCTTTGTGATGCTGAAGCTATTTCTCTTCATCATATGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* * * * *
22814084 TGAAACGAGGCTTGAAATGGATAGATCTACTAAAAAAAAACAAGGAACTATCTAAAAAGCTTTAG
66 TGAAACGAGGCTTGAAATGGATCGATCTTCT---AAAAAACAAGGAACT-TTTGAAAAGCTTTCG
* * * * * *
22814149 CTAATTTACGATCACAACCTCCTACTTACAAGATTTTACAAATCTCACGATCCGTTG-ATTTACG
127 CTGATTTACGATCACTACCTTCTACTTACAGGATTTTACAAATCTCACGGTCCG-CGAATTTACG
* * * * * * **
22814213 ATCACAACTATCATTTTTAAAGCTTGCTGATTTATG-AT-CATAGCTTCAGTTTATTTATTTATG
191 ATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACA-A-CTTCAGTTCATTGATTTACA
* * * * **
22814276 ATCAAGAACACTTCATTAAGAATTCGCCGATTTACGATCGCAACTCCATTTAAACAGTTCACTGA
254 ATCATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGA
* * * *** * *
22814341 TTTACGATTACAATTTTCATTTTTAAAGCTCGCTGATTTACAATCACTATTTCAGTTCAATAATT
319 TTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATT
* * * * **
22814406 TACGATCATGACCACTTCTTGGTTCACAA-GAAATATAAATTTGCTAAACTAGTTCCAAAC-TCT
384 TACGATCATGAACACTTCTTGGTTCACAAGGAAA-GTAAATTTGCTGAACTAGTTCCAAGCGTGG
* * * * * *
22814469 CTCTTGAGATGATTTTCAACTAGCTAATTCTGTCCTCTTTGCCCTTCAGAGCAAGTTAGATGCTA
448 C-C-AGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTA
* * * * * * *
22814534 GACATGATAAATAAATG-TGTATTAAGGAAGAACTAAAAACTAACCTTGAAAGAAGGGGG
511 GAGATGATAAATAAA-GACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* ** * * ** *
22814593 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCCGAAATTACTTTTCTGAACTGA-ACGT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCAC-CATACGT
* * * * * *
22814657 TTGAAACGAGGCTCGAAATGGATTGATTTTCTCAAAAAACAAAGAACTTTCTGAAAAGC-TTCAA
65 CTGAAACGAGGCTTGAAATGGATCGATCTTCT-AAAAAACAAGGAACTTT-TGAAAAGCTTTC-G
* * * * * *
22814721 CTGATTTACGATCACAACCTTGTACTTACAGGATTTTAAAAATCTCACGGTCTGTGGAATTACAC
127 CTGATTTACGATCACTACCTTCTACTTACAGGATTTTACAAATCTCACGGTCCG-CGAATT-TAC
* * *** * * * * * *
22814786 GATCAAAACTGTCTTTTTTACTTCTCGCTAATTAACGTTTATAGCTTCAGTTCATTAATTTACAA
190 GATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTACAA
** ** * * *
22814851 TCATGAACACTTTGTTAAGAGTTTACC-AGTTTACGATCGCTACTTCACTTAAATAGTTCGTTAA
255 TCATGAACACTTCATTAAGAGTTCGCCGA-TTTACGATCGCAACTCCACTTAAATAGTTCGTTGA
* * * * * * *
22814915 TTTATGATCACAACTATCATTTTTAAAGCTCACTTATTTACAATCATGACTTCATTTCATTTATT
319 TTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATT
* * * *
22814980 TATGATCACGAACACTTCTTGGTTCATAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGTGTGGC
384 TACGATCATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGC
* * *
22815045 CAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAAAGAAAGTTCGATGCTAGAG
449 CAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAG
* ** * *
22815110 ATGATGAATTTAGACGTGTTGAGGAAGAACTTAAAACTAACCTTG-A-AAGGAGG
514 ATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAGAAGGAGG
* * * * * * * *
22815163 ATAGAGGAATCAATTTTGTTAAATTGTCTTTGTAATGCTGAAGCTGCATCTCTTCACAATATGTT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* * * *
22815228 TGAAACAAAGCTTGTAATGGATCGATCTTCTGAAAAAATAAGGAACTATTTGAAAAGCTTTCGCT
66 TGAAACGAGGCTTGAAATGGATCGATCTTCT-AAAAAACAAGGAACT-TTTGAAAAGCTTTCGCT
* * * *
22815293 GATTTACGATCACTACCTTCTACTTACAGGATTTTACGAATCTCACGGTCCACAAATTTACAATC
129 GATTTACGATCACTACCTTCTACTTACAGGATTTTACAAATCTCACGGTCCGCGAATTTACGATC
* * * * * * *** *
22815358 ATAACAGTCAATTGTAGAGCTCGTTGATTTACGTATACAACTTCAGGTT-ATTTATTTGTGATAA
194 ATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCA-GTTCATTGATTTACAATCA
* * * * * *
22815422 TGAACACTTAATTAAGAGTTCGCTGATTTATGATCGCAACTCCACTTAAATAGTCCATTTATTTA
258 TGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTTA
* * * * * * * *
22815487 TGATCAAAACTATCATCTTTAAAGCTTGTTGATTTACAATCACGGCTTTAATTCATTCATTTACG
323 CGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATTTACG
* * * * *
22815552 ATCATGAATACGTCTTGGTTCACAAAGAAAGTAAATTTGTTGAACTAGTTCCAAGCGTGGCCAGG
388 ATCATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCAGA
* * * *
22815617 GATGGTTTTCAACTAGCTAATTTTGACCTCTCTACCGTTTAGAGCAAGTTAGATGCTAAACATGA
453 GATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAGATGA
* * * * *
22815682 TTAATAAAGGCGTATTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGGAAG
518 TAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * * * **
22815734 ATAAAGTAATAAATTTTATTACGTTGTCTTTATGAAGCTGAAGCTAC-T-T-TTCACCATTTGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* *
22815796 TGAAACGAGGCTTGAAATGGATCGAT-TTGCTAAAAAA-AAGGAACTTCTTGAAAAGTTTTAGCT
66 TGAAACGAGGCTTGAAATGGATCGATCTT-CTAAAAAACAAGGAACTT-TTGAAAAGCTTTCGCT
* * * * *** * * *
22815859 GATTTATGATCA-TGACCTTGTACTTGCAAGATTTTACAAAT-TTGTGGATCTGCGGATTTACTA
129 GATTTACGATCACT-ACCTTCTACTTACAGGATTTTACAAATCTCACGG-TCCGCGAATTTACGA
* * * * * * * *
22815922 T-ATTAACTATCTTTTTTACAGCTCGCTGATTTACATTTATAGCTCCAGTTCATTGATTTACAAT
192 TCA-TAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTACAAT
* * ** *
22815986 CATGAACACTTCATTAAGAGTTCACCGATTTACGATCACAACTTTACTTAAATAGTTCATTGATT
256 CATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATT
* * * * *
22816051 TACGATCGCAACTGA-GATTTTTAAAGCTCGTTGA-TTACAATCACAGCTTTAGTTCATTGATTT
321 TACGATCACAACT-ATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATTT
* ** * * * *
22816114 ATGATCATGAACACTTCCGGGTTCATAA-GAAATTTAAATTTGGTGAACTAGTTCCAAGCGTGGT
385 ACGATCATGAACACTTCTTGGTTCACAAGGAAA-GTAAATTTGCTGAACTAGTTCCAAGCGTGGC
* * * *
22816178 TAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCT-GCCTTTCAAAGCAAGTTAGATTCTAGA
449 CAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTT-AGAGCAAGTTAGATGCTAGA
* * * ** *
22816242 GATGATAAATATAGACGTGTTGAGAAAGAACTTAAAACTGATTTTGAAAGAAGGAAG
513 GATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
** *
22816299 ATAGATAAATCAATTTTGTTACATTGT-TTT-TGAGATGCTGAAGCTACTTCTCTTCACCATACG
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAG--GCTGAAGCTACATCTCTTCACCATACG
* * * *
22816362 TCTGAAAAGAGGC-TGAAAATGGATCGATCTGCTAAAAAAAAAGGAACTTTCTGAAAAGCTTTAG
64 TCTGAAACGAGGCTTG-AAATGGATCGATCTTCTAAAAAACAAGGAACTTT-TGAAAAGCTTTCG
* * * * * *
22816426 -TTAGTTTACAATCA-TGGCCTTCTACTTACCA-GATTTTATAAATCTCATGGTCCGTTG-ATTT
127 CTGA-TTTACGATCACT-ACCTTCTACTTA-CAGGATTTTACAAATCTCACGGTCCG-CGAATTT
* * * *
22816487 ACGATCAAAACTGTCATTTTTAAAGCTCGCTAATTTACG-AT-CATGATTTCAATTCATTGATTT
188 ACGATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACA--ACTTCAGTTCATTGATTT
* * * * ** * *
22816550 ACAATGATGAATC-GTTCATTAAGAGTTCACCGATTTACAATCATAACTCCACTTAAATAATTCA
251 ACAATCATGAA-CACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCG
* ** * * * ** *
22816614 TTGATTAAATATCACAACTGTTATTTTTAAAGCTCGCTGATTTACAATGACAACTTCAATTCATT
315 TTGATTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATT
* * *
22816679 GATTTACGATTA-GAACACTTCTTGGTTTACAAGGAATA-TAAATTAT-CTAAACTAGTT-CAAG
380 GATTTACGATCATGAACACTTCTTGGTTCACAAGGAA-AGTAAATT-TGCTGAACTAGTTCCAAG
* * * * * * *
22816740 CATTG-CTGAAGATGATTTTCAACTAGCTAATTTT-AGCCTATTTACCCTTCAGAGTAAGTTAGA
443 CGTGGCCAG-AGATGATTTTCAACTAGCTAATTTTGA-CCTCTCTACCCTTTAGAGCAAGTTAGA
* * * ** * *
22816803 TGCTAGAGATAATGAATATAGACGTACT-AGAAAAGAACTCAAAACTAACCTTGAAAGAAGGAGG
506 TGCTAGAGATGATAAATAAAGACGTGTTGAG-GAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * **
22816867 ATAGAGGAATCAATTTTGTTAAATTGTCTTTGTGATACTGAAGCTACATCTCTTCACCATACGTC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* * * * * * * * **
22816932 TAAAATGAGGTTTGAAGTGGATCGGTCTTCTAAAAAA-AAAGAACTATCTAAAAAGC-TTCAATT
66 TGAAACGAGGCTTGAAATGGATCGATCTTCTAAAAAACAAGGAACT-TTTGAAAAGCTTTC-GCT
* * ** *
22816995 AATTTACGATCA-TGACCTTTTACTTACAGGATTTTATGAATCTCACGGTCTGCGAATTTACGAT
129 GATTTACGATCACT-ACCTTCTACTTACAGGATTTTACAAATCTCACGGTCCGCGAATTTACGAT
* ** * * * * **
22817059 CATAACTGTCATTTTTAAAGTTTTCTAATTTACATATACAACTTCAATTCATTTATTTATGATCA
193 CATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTACAATCA
** * * *
22817124 TGAGTACTTAATTAAGAG-TCG-C-A---AC--T----A---CACATAAACAGTTCGTTGATTTA
258 TGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTTA
* * * * *
22817174 TGATCACAACTATCATTTTTAAAGCTCTCTGATTTACAATCACAGCTTCAATTCATTTATTTACG
323 CGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATTTACG
* * * * * *
22817239 ATCATGAAAACTTATTGGGTCACAAGGAATGTAAATTTGCTGAACTAGTTTCAAGCGTGGTCAGA
388 ATCATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCAGA
* * *
22817304 GATGATTTTCAACTAGCTAGTTTTGCCCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGACATGA
453 GATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAGATGA
* * *
22817369 TAAATAAAGGCATGTTTAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAGG
518 TAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * *
22817421 ATAGAGGGATCAATTTTTGTTACATTGTCTTTATGAGGCT-AGAGCTATATCTTTTCACCGTCCG
1 ATAGAGGAATCAA-TTTTGTTACATTGTCTTTATGAGGCTGA-AGCTACATCTCTTCACCATACG
* * * * *
22817485 TCTGAAATGAGGTTTAAAATGAATTGAT-TTGCTCAAAAAGACAAGGAACTTTTTGAAAAGC-TT
64 TCTGAAACGAGGCTTGAAATGGATCGATCTT-CT-AAAAA-ACAAGGAAC-TTTTGAAAAGCTTT
* * * * * *
22817548 CAGCTGATTTATGATCACGACCTTATACTTACAGGATTATACAAATCTAATGGTCCGC-AGATTT
125 C-GCTGATTTACGATCACTACCTTCTACTTACAGGATTTTACAAATCTCACGGTCCGCGA-ATTT
* * * * * * * *
22817612 ACGATCATAACTGTCTTTTTTACAGCTTGTTTATTTACATTTACAACTTTAGTTCATTGATTTAC
188 ACGATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTAC
* * * * * ** * *
22817677 AA-CTATGAACACTTCATTAAAAGTCCGCCAATTTACAATTGTGACTTCACTTAAATAGTTTGTT
253 AATC-ATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTT
* * * *
22817741 GAGTTACGATCACAACTATTATTTTTAAAGCTCACTGATTCACAATCACGGCTTCAGTTCATTGA
317 GATTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGA
* ** * * *
22817806 TTTACGATCATGAACAC-TCTTTGTTTTGCAAGGAATGTAAATTTGCTGAACTAGTTCAAAGTGT
382 TTTACGATCATGAACACTTC-TTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGT
* * * * * * *
22817870 GGCCAGAGATGATTTTCAACTAGCTAACTCTGACTTCTCT-GCCTTTCAAAGTAAATTAGATGCT
446 GGCCAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTT-AGAGCAAGTTAGATGCT
* *
22817934 AGAGATGATAAATAAAGGCGTGTTGAGGAAGAACTCAAAACT-AGCCTTAAAAGAAGGAGG
510 AGAGATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGA-CCTT-GAAGAAGGAGG
* * * * * * *
22817994 ATAGAGGAATTAATTTTGTTACATTGTCTTTGTGAGGCTAAAGCTA-TTTTTTTGAACCATACGT
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTT-CACCATACGT
* ** * * ** *
22818058 CT-AAACGAGGCTCGAAATTAATCGAT-TTGCTCAAAAAACAAGGAAGTTTCTAAAAAAATTTAG
65 CTGAAACGAGGCTTGAAATGGATCGATCTT-CT-AAAAAACAAGGAACTTT-TGAAAAGCTTTCG
* ** * * * * * * * *
22818121 CTGACTTATAATTACGACCTTGTACTTATAGGGTTTTA-AGAATCTCACGGTCTGCGAGTTTTCG
127 CTGATTTACGATCACTACCTTCTACTTACAGGATTTTACA-AATCTCACGGTCCGCGAATTTACG
* * *
22818185 ATCA-ACACTGTCTTTTTTACAA-CAT-GCTGATTTATGT-TCACAACTTTAGTTCATTGATTTA
191 ATCATA-ACTGTCATTTTTA-AAGC-TCGCTGATTTACGTAT-ACAACTTCAGTTCATTGATTTA
* * * * ** * * * * *
22818246 CAATCATAAAAACTCCATTAAGAGTTTGTTGATTTATGATTGCAACTCGACTTAAACATTTCGTT
252 CAATCATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTT
* * * * * *
22818311 GGTTTACGATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCATGACTTCAGTTTATTTA
317 GATTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGA
* * * * * *
22818376 TTTATGATCATTAACTCTTCTTGGTTCACAA-GAAATTTAAATTTACTGAACTAGTTTCAAGCGT
382 TTTACGATCATGAACACTTCTTGGTTCACAAGGAAA-GTAAATTTGCTGAACTAGTTCCAAGCGT
* * * ** * *
22818440 GGCCAGAGATGATTTTCAAGTAGCTAATTTTGACCTCTTTGCCCTCCATAGCAAGTTAGATTCTA
446 GGCCAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTA
*
22818505 GAGATGATAAATAAAGACGTGTTGAGGAAGAACTTAAAACTGACCTTGAAAGAAGGAGG
511 GAGATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * * *
22818564 ATAGAGGGATCAATTTTGTTAAATTGTCTTTATTAGGTTGAAGCTACTTCTCTTCACCATACGAC
1 ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
* *
22818629 T-AGAATGAGGATT-AAATGGATCGATCTTCTCAAAAAA-ATGAGGAACTATTTGAAAAGC-TTC
66 TGA-AACGAGGCTTGAAATGGATCGATCTTCT-AAAAAACA--AGGAACT-TTTGAAAAGCTTTC
* * * * * * * *
22818690 AACTCATTTACGATCACAACCTTCTACTTATAGGATTTTA-AGAATCTTACGATCCACAAATTTA
126 -GCTGATTTACGATCACTACCTTCTACTTACAGGATTTTACA-AATCTCACGGTCCGCGAATTTA
* * * * * * *
22818754 TGATCATATCTGTCATTTGTAAAGCTCACTGATTTACTTATACAACTTTAGTTCATTTATTTACG
189 CGATCATAACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTAC-
* ** * * *
22818819 AA-CATGAACACTTAATTAAGAGTTCTTCGATTTACGATCGCAAGTCCACTTAAACAATTCGTTG
253 AATCATGAACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTG
* * * ** *
22818883 ATTTACGATCACAACTGTCATATTCAAAGCTTACTGATTTACAATCTA--GTTTCAGTTCATTGA
318 ATTTACGATCACAACTATCATTTTTAAAGCTCGCTGATTTACAATC-ACGGCTTCAGTTCATTGA
* * * * * * *
22818946 TTTATGATCTTGAGCACTTGTTGGTTCACTAGGAATGTAAATTTGCTGAACTAGTTCCAAGCGTT
382 TTTACGATCATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTG
** * * * * * *
22819011 GTTAGAGATGATTTTCAACTAGCTAATTCTGAACTTTTTGCCC-TT----CAAGTTAGATTCTAG
447 GCCAGAGATGATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAG
* * * * *
22819071 AAATGATAAATAAATATGTGTTGAGGAAGAACTCAAAATTGACCTTGAAAAAAGGAGG
512 AGATGATAAATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTG-AAGAAGGAGG
* * * * *
22819129 ATAGAGGAATCAATTTTGTTAAAATTATCTTTATTAGGCTGAAGCTACTTCTCTTCACCATCCGT
1 ATAGAGGAATCAATTTTGTT-ACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGT
* * *
22819194 -TTAAACAAGGCTTGAAATGGATCGATCTACTAAAAAA
65 CTGAAACGAGGCTTGAAATGGATCGATCTTCTAAAAAA
22819231 AAATAAACTT
Statistics
Matches: 3776, Mismatches: 728, Indels: 277
0.79 0.15 0.06
Matches are distributed among these distances:
552 79 0.02
553 36 0.01
554 120 0.03
555 69 0.02
556 5 0.00
557 3 0.00
558 135 0.04
559 4 0.00
560 1 0.00
561 3 0.00
563 3 0.00
564 14 0.00
565 316 0.08
566 255 0.07
567 143 0.04
568 563 0.15
569 252 0.07
570 727 0.19
571 312 0.08
572 124 0.03
573 331 0.09
574 272 0.07
575 8 0.00
576 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Consensus pattern (568 bp):
ATAGAGGAATCAATTTTGTTACATTGTCTTTATGAGGCTGAAGCTACATCTCTTCACCATACGTC
TGAAACGAGGCTTGAAATGGATCGATCTTCTAAAAAACAAGGAACTTTTGAAAAGCTTTCGCTGA
TTTACGATCACTACCTTCTACTTACAGGATTTTACAAATCTCACGGTCCGCGAATTTACGATCAT
AACTGTCATTTTTAAAGCTCGCTGATTTACGTATACAACTTCAGTTCATTGATTTACAATCATGA
ACACTTCATTAAGAGTTCGCCGATTTACGATCGCAACTCCACTTAAATAGTTCGTTGATTTACGA
TCACAACTATCATTTTTAAAGCTCGCTGATTTACAATCACGGCTTCAGTTCATTGATTTACGATC
ATGAACACTTCTTGGTTCACAAGGAAAGTAAATTTGCTGAACTAGTTCCAAGCGTGGCCAGAGAT
GATTTTCAACTAGCTAATTTTGACCTCTCTACCCTTTAGAGCAAGTTAGATGCTAGAGATGATAA
ATAAAGACGTGTTGAGGAAGAACTCAAAACTGACCTTGAAGAAGGAGG
Found at i:22827633 original size:26 final size:25
Alignment explanation
Indices: 22827604--22827656 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
22827594 GATCTTCCCA
*
22827604 ATTAAAGGCTCTTTGCGAGCTTCCTG
1 ATTAAAGGCTCTTCG-GAGCTTCCTG
* * *
22827630 ATTAATGTCTCTTCGGAGCTTTCTG
1 ATTAAAGGCTCTTCGGAGCTTCCTG
22827655 AT
1 AT
22827657 ATTGCTCACT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTAAAGGCTCTTCGGAGCTTCCTG
Found at i:22830831 original size:134 final size:134
Alignment explanation
Indices: 22830583--22830921 Score: 401
Period size: 134 Copynumber: 2.5 Consensus size: 134
22830573 CTAATTTATT
* * * ** * * * *
22830583 ATCACAACTGTCATTTTTAAAGGTTGCTGATTTATGATCACAACTT-AAGTTCATTCATTTATGA
1 ATCACAACTGTCATTTTTAAAGCTCGCTGAATTACAATCACAGCTTCAA-TTAATTGATTTACGA
* * * ** *
22830647 TCATGAACACTTCATTAAGAGTTCATTGATTTACAGTTGTGACTCCACTTAAACAATTCAATTAT
65 TCATGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGAT
22830712 TTACA
130 TTACA
* * *
22830717 ATCACAACTGTCATTTTTAAAGCTCACTGAATTACAATCATAGCTTCAATTGATTGATTTACGAT
1 ATCACAACTGTCATTTTTAAAGCTCGCTGAATTACAATCACAGCTTCAATTAATTGATTTACGAT
* * * *
22830782 CTTGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCTACTTAAACAATTTACTGATT
66 CATGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGATT
**
22830847 TATG
131 TACA
* * * *
22830851 ATCACAACTATCATTTTTAAAGCTGGCTGAATTACAATCACGGCTTCAATTAATTGAATTACGAT
1 ATCACAACTGTCATTTTTAAAGCTCGCTGAATTACAATCACAGCTTCAATTAATTGATTTACGAT
*
22830916 TATGAA
66 CATGAA
22830922 TAGTTCTTGG
Statistics
Matches: 172, Mismatches: 32, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
134 170 0.99
135 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (134 bp):
ATCACAACTGTCATTTTTAAAGCTCGCTGAATTACAATCACAGCTTCAATTAATTGATTTACGAT
CATGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCACTTAAACAATTCAATGATT
TACA
Found at i:22831556 original size:292 final size:292
Alignment explanation
Indices: 22831023--22831556 Score: 675
Period size: 292 Copynumber: 1.8 Consensus size: 292
22831013 TCCTTGAGAT
* * ** * * *
22831023 CAAGTTAGATGCTAGAGATGATGAATATAGGTGTGTTGAGGAAGAACTTAAAAGTGACCTTGAAA
1 CAAGTTAGATGCTAAAGATGACGAATATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTAAAA
* * * *
22831088 GAAAAAGGATAGAGGAATCATTTTTTTTACATTGTCTTGGTGAGGCTGAAGCTACTTCTTTTCAC
66 GAAAAAGGATAAAGGAATCATTTTCTTTACATTGTATTGATGAGGCTGAAGCTACTTCTTTTCAC
* * *
22831153 TGTACATTTGAAACAAGTCTTAAATGGATTGATCTGCTAAAAAAAATAAGGAACTTTCCAAAAAG
131 AGTACATATGAAACAAGTCTAAAATGGATTGATCTGCTAAAAAAAATAAGGAACTTTCCAAAAAG
* ** * * * * *
22831218 TTTCATTTGATTTACAATATTGACCTTCTACTTATAGGATTTATGAATCTCATGGTTCGCTTCAA
196 CTTCAGCTAATTTACAACATCGACCTTCTACTTACAAGATTTATGAATCTCATGGTTCGCTTCAA
22831283 CTAGCAAATTTTGTCCTCTTTTCTCATTAGAA
261 CTAGCAAATTTTGTCCTCTTTTCTCATTAGAA
22831315 CAAGTTAGATGCTAAAGATGACGAATATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTAAAA
1 CAAGTTAGATGCTAAAGATGACGAATATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTAAAA
** * * * *
22831380 GAAGGAGGATAAAGGAATC-TATTTCTTTACATTGTATTTATTAGGTTGATGCTACTTCTTTTCA
66 GAAAAAGGATAAAGGAATCAT-TTTCTTTACATTGTATTGATGAGGCTGAAGCTACTTCTTTTCA
* **
22831444 CAGTACATATGAAATGAAG-CATAAAATGGATTGATCTGCT-AAAAAAATAAGGATA-TTTCTGA
130 CAGTACATATGAAA-CAAGTC-TAAAATGGATTGATCTGCTAAAAAAAATAAGGA-ACTTTCCAA
* *
22831506 AAAGCTT-AGCTAATTTTGCAGCA-CGACCTTCTACTTACAAGATCTTATGAA
192 AAAGCTTCAGCTAA-TTTACAACATCGACCTTCTACTTACAAGAT-TTATGAA
22831557 CCTTACTTTC
Statistics
Matches: 203, Mismatches: 33, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
291 21 0.10
292 160 0.79
293 22 0.11
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (292 bp):
CAAGTTAGATGCTAAAGATGACGAATATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTAAAA
GAAAAAGGATAAAGGAATCATTTTCTTTACATTGTATTGATGAGGCTGAAGCTACTTCTTTTCAC
AGTACATATGAAACAAGTCTAAAATGGATTGATCTGCTAAAAAAAATAAGGAACTTTCCAAAAAG
CTTCAGCTAATTTACAACATCGACCTTCTACTTACAAGATTTATGAATCTCATGGTTCGCTTCAA
CTAGCAAATTTTGTCCTCTTTTCTCATTAGAA
Found at i:22832689 original size:47 final size:47
Alignment explanation
Indices: 22832635--22832728 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
22832625 GAAAAGTGTC
* *
22832635 AGCTAATTTATGATTATGACATTTTACTTACAGGATTTTACGAATCT
1 AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
* *
22832682 AGCTAATTTACGATCATGACCTTTTACTTATAGGATTTTACGAATCT
1 AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
22832729 CACAATCTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (47 bp):
AGCTAATTTACGATCATGACATTTTACTTACAGGATTTTACGAATCT
Found at i:22834502 original size:263 final size:263
Alignment explanation
Indices: 22834031--22834516 Score: 607
Period size: 263 Copynumber: 1.8 Consensus size: 263
22834021 ATTTAAAATG
* * * *
22834031 ACGACTTCAGTTAATTGATTTGCGATCCTGAAAACTTCTTGTTTCAAAAGGAATTTAAATTTGTT
1 ACGACTTCAGTTAATTGATTTACGATCATGAAAACTTCTTGTATCAAAAGGAATTTAAATTTGCT
* *
22834096 GAACTAATTCCAAGCATGGCTAGAGACAATTTTCAACAAGCTAATTCTGGCCTCTCTGCATTTCA
66 GAACTAATACCAAGCATGGCTAGAGACAATTTTCAACAAGCTAATTCTGACCTCTCTGCATTTCA
* * * * * * * * * *
22834161 GAGCAAGTTAGATGCTAGTGATGATAAATTTAGACGTATTGAGGAGGAACTTAAAATTGACCTTT
131 GAGCAAGCTAGATGCTAGAGATCATAAATATAGACGTATGGAGAAAGAACTCAAAACTGACCTTG
* *
22834226 AAAGAAGGAGGATAGAGGAATTAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTC
196 AAAGAAGGAGGATAAAGGAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTC
22834291 ATC
261 ATC
** * *
22834294 ACGACTTCAGTTAATTGATTTATTATCATGAACACTTCTTAG-ATCACAAGGAATTTAAATTTGC
1 ACGACTTCAGTTAATTGATTTACGATCATGAAAACTTCTT-GTATCAAAAGGAATTTAAATTTGC
* * * * * * * * *
22834358 TGAACTAGTACTAAGCGTGGCTAGATATAATTTTCAACTAGCTAATTTTGACCTCTTTGCCCTTT
65 TGAACTAATACCAAGCATGGCTAGAGACAATTTTCAACAAGCTAATTCTGACCTCTCTG-CATTT
* * * *
22834423 -AGAGTAAGCTAGATGCTAGAGATCATGAATATAGGCGTGTGGAGAAAGAACTCAAAACTGACCT
129 CAGAGCAAGCTAGATGCTAGAGATCATAAATATAGACGTATGGAGAAAGAACTCAAAACTGACCT
* *
22834487 TGAAATAATGAGGATAAAGGAATCAATTTT
194 TGAAAGAAGGAGGATAAAGGAATCAATTTT
22834517 CTTTCGTTGT
Statistics
Matches: 184, Mismatches: 37, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
263 179 0.97
264 5 0.03
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (263 bp):
ACGACTTCAGTTAATTGATTTACGATCATGAAAACTTCTTGTATCAAAAGGAATTTAAATTTGCT
GAACTAATACCAAGCATGGCTAGAGACAATTTTCAACAAGCTAATTCTGACCTCTCTGCATTTCA
GAGCAAGCTAGATGCTAGAGATCATAAATATAGACGTATGGAGAAAGAACTCAAAACTGACCTTG
AAAGAAGGAGGATAAAGGAATCAATTTTGTAACATTGTCTTTGTAAGGTTAAAGTTACTGTTTTC
ATC
Found at i:22837824 original size:568 final size:563
Alignment explanation
Indices: 22836593--22837824 Score: 1200
Period size: 568 Copynumber: 2.2 Consensus size: 563
22836583 CAAGTTAGAT
* * * * **
22836593 GCTCAATTTTGTTACATTTTCTTTGTGAGGCTAAAGCTACTTCTCTTAACCGTATGCTTGAAACC
1 GCTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTCTTAATCGTATCCTTGAAATG
* * *
22836658 AACTTGAAATGGATAGATCTACTTAAAAAAACAAGGATCTTTTCGAAAAGCTTAACTTAATTTAC
66 AGCTTGAAATGGATAGATCTAC-T--AAAAACAAGGACCTTTTC-AAAAGCTTAACTGAATTTAC
* * * **
22836723 AATCATGACCTTCTACTTATAAGATTTTACGTATCTCACGATCCACATATTGACGATCATATTTG
127 AATCACGACCTTCTACTTATAAGATTTTACGAATCTCACGATCCACATATTGACGATCAAAACTG
* * * * *
22836788 TCATTTTTAAAGCTCACTGATTTACTATCACGGCTTTAGTTTATAGATTTACTATCATGAACACT
192 TCATTTTTAAACCTCACTGATTTACTATCACGACTTTAGTTCATAGATTTACGATCATGAAAACT
* * ****
22836853 TCATCAAGAGTTCAACAATTTATGATCGCAACTTAACTCAAATAGTTTGTTGATTTACGATCACA
257 CCATCAAGAGTTCAACAATTTATGACCGCAACTTAACTCAAATAGTTCAAAGATTTACGATCACA
* * * * * *
22836918 TCTGTCATTTTTAAAACATGCTAATTTATAATCACAACTTCAGTTCATTGATTTATGATCATGAA
322 ACTGTCATTTTTAAAACATGCTAATTTACAATCACAACTTCAGTTAATTAACTTACGATCATGAA
** * ** *
22836983 CGCTTCTTGCTTCACAAGGAATGTAAATTTGATGAACTAGTTCCAAGCTTGGCCAAAATTAATTT
387 CAATTCTTGCTTCACAAGGAATGTAAATTTGA-GAACTAATAACAAGCATGGCCAAAATTAATTT
* * * * *
22837048 TCAACTAACTAATTCTAACCTCCATGCCTTTTAGAGCAAGTTAGATGTTAAACATGATGATTATA
451 TCAACTAACTAATTCTAACCTCCATGCCTTTCAAAGAAAGTTAGATGCTAAACATGATGAATATA
* * * *
22837113 GGCGTGTTGAGGATGAACTCAAAATTGACCTTAAAATAAAGATAGAGG
516 GGCGTGTTGAGGAAGAACTCAAAAATGAACTTAAAAGAAAGATAGAGG
** * * * ** * * *
22837161 AATCAATTTTTTTACATTGTCTTTGTGAGGCTGAAACTA-TTTTACAAAATAGTA-CGTCTAAAA
1 GCTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCT-CTTAATCGTATCCT-TGAAA
** * * *
22837224 TGAGGCTTGATTTGGATTGATCTATTCTAAAAACAAGGAACCTTCTT-AAATGCTTCAGCTGAA-
64 TGA-GCTTGAAATGGATAGATCTA--CTAAAAACAAGG-ACCTT-TTCAAAAGCTT-AACTGAAT
** * * * *
22837287 TTAGGATCACGACTTTCTACTTAT-AGAATTTTATGAATCTCAC-AGTCTAC-TGATTTACGATC
123 TTACAATCACGACCTTCTACTTATAAG-ATTTTACGAATCTCACGA-TCCACAT-ATTGACGATC
* *
22837349 AAAACTGTCATTTTTAAACCTCAC-GAATTTAC-AGTCATGACTTCT-GTTCATTGATTTACGAT
185 AAAACTGTCATTTTTAAACCTCACTG-ATTTACTA-TCACGACTT-TAGTTCATAGATTTACGAT
* ** * * *
22837411 CATGAAAACTCCATTAA-ATGTTCGTCAATTTATGACCGCAACTTCACTTAAGTAGTTCAAAGAT
247 CATGAAAACTCCATCAAGA-GTTCAACAATTTATGACCGCAACTTAACTCAAATAGTTCAAAGAT
* * * * *
22837475 TTACGTTCACAACTGTCATTTTTAAAGC-TCGTTGATTTACAATCACGACTTCAGTTAATTAACT
311 TTACGATCACAACTGTCATTTTTAAAACAT-GCTAATTTACAATCACAACTTCAGTTAATTAACT
* *
22837539 TACGATCATGAACAATTCTTAG-TTCACAAGGAATGTAAATTTTGCA-AACTAATAATAATCATG
375 TACGATCATGAACAATTCTT-GCTTCACAAGGAATGTAAA-TTTG-AGAACTAATAACAAGCATG
* * * ** * *
22837602 GGCAAAGA-TGATTTTCAACTAGCTTTTTCTGACC-CCTCTGCCTTTCAAAGAAAGTTAGATGCT
437 GCCAAA-ATTAATTTTCAACTAACTAATTCTAACCTCC-ATGCCTTTCAAAGAAAGTTAGATGCT
* * * * * * * *
22837665 AGATATGTTGAATATATGCGTGTTGAGGAAGAACTTAAAAATGAACTTGCAAGAAGGAGGATATA
500 AAACATGATGAATATAGGCGTGTTGAGGAAGAACTCAAAAATGAACTT--AA-AAGAAAGATAGA
22837730 GG
562 GG
*
22837732 GCTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTACTCTTAATCGTATCCTTGAAATG
1 GCTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTCTTAATCGTATCCTTGAAATG
*
22837797 AGCTTGAAATGGATCGATCTACTAAAAA
66 AGCTTGAAATGGATAGATCTACTAAAAA
22837825 ACACAAGGAT
Statistics
Matches: 527, Mismatches: 111, Indels: 52
0.76 0.16 0.08
Matches are distributed among these distances:
567 14 0.03
568 394 0.75
569 32 0.06
570 23 0.04
571 60 0.11
572 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (563 bp):
GCTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTCTTAATCGTATCCTTGAAATG
AGCTTGAAATGGATAGATCTACTAAAAACAAGGACCTTTTCAAAAGCTTAACTGAATTTACAATC
ACGACCTTCTACTTATAAGATTTTACGAATCTCACGATCCACATATTGACGATCAAAACTGTCAT
TTTTAAACCTCACTGATTTACTATCACGACTTTAGTTCATAGATTTACGATCATGAAAACTCCAT
CAAGAGTTCAACAATTTATGACCGCAACTTAACTCAAATAGTTCAAAGATTTACGATCACAACTG
TCATTTTTAAAACATGCTAATTTACAATCACAACTTCAGTTAATTAACTTACGATCATGAACAAT
TCTTGCTTCACAAGGAATGTAAATTTGAGAACTAATAACAAGCATGGCCAAAATTAATTTTCAAC
TAACTAATTCTAACCTCCATGCCTTTCAAAGAAAGTTAGATGCTAAACATGATGAATATAGGCGT
GTTGAGGAAGAACTCAAAAATGAACTTAAAAGAAAGATAGAGG
Found at i:22838864 original size:287 final size:288
Alignment explanation
Indices: 22838314--22838883 Score: 786
Period size: 287 Copynumber: 2.0 Consensus size: 288
22838304 TATGAGGTTT
22838314 AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
1 AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
* * * * * * *
22838379 CGAGTAACTTTCTGAAAAGCTTCAGTGAAATTACAATCATGACCTTATACTTATAGGATTTTATG
66 CAAGGAACTTTCTAAAAAGCTTCAGCGAAATTACAATCACGACATTATACTTACAGGATTTTATG
* ** * *
22838444 AATCTCACGGTCCGCTAATTTACGATCACAATTCTCTTTTTTGAGGCTCATTGATTTACGATCAT
131 AATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGATCAT
* * * *
22838509 GAACATTTCGTTAAGAGTTTCCCAATTTTTTATTTATGATCGCAATTTCACCAAATCAGTTCGTT
196 GAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCAAATCAGTTCGTT
22838574 GATTTACTATCACAACTTCAGTTTGCTG
261 GATTTACTATCACAACTTCAGTTTGCTG
** * * *
22838602 AAGCTACTTCTCTTAATTGTATG-TTTGAAATGAGAC-TATAAATGGTCTAATCTGCTAAAAGAA
1 AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACAT-TAAATGGTCCAATCTG-GAAAAAAA
* * *
22838665 A-CAAGGAACTTTCTAAAAAGCTTCAGCGGAATTGCAATCACGACATTCTACTTACAGGATTTTA
64 ACCAAGGAACTTTCTAAAAAGCTTCAGCGAAATTACAATCACGACATTATACTTACAGGATTTTA
* * * * *
22838729 TGAATCTTACGGTCCACTAATTTACGATCATAATTGTAATATTTGATGCTCGCTGATTTACGATC
129 TGAATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGATC
* * ** * *
22838794 ATGAACACTTCATTAAGAGTTTCTCGATTTTTCATTTATGATCGCAACTTCACTTAATTAGTTTG
194 ATGAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCAAATCAGTTCG
22838859 TTGATTTACTATCACAACTTCAGTT
259 TTGATTTACTATCACAACTTCAGTT
22838884 CATTAATTTA
Statistics
Matches: 245, Mismatches: 35, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
286 1 0.00
287 214 0.87
288 30 0.12
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (288 bp):
AAGCTACTTCTCTTAATTGTATGCTTCAAAATGAGACATTAAATGGTCCAATCTGGAAAAAAAAC
CAAGGAACTTTCTAAAAAGCTTCAGCGAAATTACAATCACGACATTATACTTACAGGATTTTATG
AATCTCACGGTCCACTAATTTACGATCACAATTCTAATATTTGAGGCTCACTGATTTACGATCAT
GAACACTTCATTAAGAGTTTCCCAATTTTTCATTTATGATCGCAACTTCACCAAATCAGTTCGTT
GATTTACTATCACAACTTCAGTTTGCTG
Found at i:22844898 original size:536 final size:541
Alignment explanation
Indices: 22843669--22845068 Score: 1648
Period size: 549 Copynumber: 2.6 Consensus size: 541
22843659 TCAGTTAATT
* * * * * ** **
22843669 GATTTATGATCATGAACAATTCCTTGTTCAAAAGGAATGTAAATTTACTGAGCTAGTTCTATTCA
1 GATTTAAGATCATGAACTATTCCTTGTTCACAATGAATGTAAATTT-CTAAAATAGTTCTAAGCA
* * * * * *
22843734 TGGCAAGAGATGATTTCCAACTAGCTTATTCTAACCCCTTTACCTTTCAGAG-AAAGTTAAATGC
65 TGGCAAGAGATGATTTTCAACTAGCTAATTCTGACCTCTTTACCCTTCAGAGCAAAG-TAGATGC
* * *
22843798 TAGATATGATGAATATATGCATGTTGAGAAAGAACTTAAAACTGAACTTGAAAGAAGGAGGATAT
129 TAGATATGATGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAACTTGAAAGAAAGAGGATAT
* * * *
22843863 AGGACTCAATTTTGTTACATTGTCTATGTGAGGGTGAAGCTACTACTCATAATCGTATCCTTGAA
194 AGGACTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTATTACTCTTAATCGTATCCTTGAA
* *
22843928 ATGAGCTTGAAATGGATCGATCTGCTCAAAAAATCAACGATCTTTCTGAAAAGCTTCAACTGATT
259 ATGAGCTTGAAATGGATTGATCTGCT-AAAAAATCAAGGATCTTTCTGAAAAGCTTCAACTGATT
* * * **
22843993 TACAATCACGACTTTAGGATTACAATTTTCATTTTTACTAATATCACGGTTCACAGATTTAGGAT
323 TACAATCACAAATTTAAGATTACAAAGTTCATTTTTACTAATATCACGGTTCACAGATTTAGGAT
* *
22844058 CATAACTTTTATTTTTAGAACTCGCTGATTTACAATCATGAACACTTCATCAACAGTTCATCGAT
388 CACAACTTTTATTTTTAGAAATCGCTGATTTACAATCATGAACACTT-AT--ACAG-T--TCGAT
* * * *
22844123 TTACGATTGCAACTTAACTTAAATAATTCACTGGTTTACGATCACAACTATTATTTTTAAAGCTC
447 TTACGATCGCAACTTAACATAAACAATTCACTGATTTACGATCACAACTATTATTTTTAAAGCTC
*
22844188 ATTAATTTACAACCATGACCTTAGTTCATT
512 ATTAATTTACAACCATGACCTTAGTTCATC
* * * * *
22844218 GATTTAAGATCATGAACTTTTCTTTGTTCACAATGAACGTAAATATTCTTAAATAGTTCTAAGCG
1 GATTTAAGATCATGAACTATTCCTTGTTCACAATGAATGTAAAT-TTCTAAAATAGTTCTAAGCA
* * *
22844283 TGGCTAGAGATGATTTTCAACTAGCTAATTCTGGCCTCTTTACCCTTCAGAGCAAATTAGATGCT
65 TGGCAAGAGATGATTTTCAACTAGCTAATTCTGACCTCTTTACCCTTCAGAGCAAAGTAGATGCT
* * * *
22844348 A-ACTATGGTGAATATATGCGTGTTGAGGAAGAACTTAAAGCTGAACTTGAATGAATGAGGATAT
130 AGA-TATGATGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAACTTGAAAGAAAGAGGATAT
*
22844412 AGGACTCAATTTTGTTACATTGTGTTTGTGAGGCTGAAGCTATTACTCTTAATCGTATCCTTGAA
194 AGGACTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTATTACTCTTAATCGTATCCTTGAA
* * *
22844477 ATGAGCTTGAAATGGATTAATCTGCTAAAAAATCAAGGATCTTTCTAAAAAGCTTCAGCTGATTT
259 ATGAGCTTGAAATGGATTGATCTGCTAAAAAATCAAGGATCTTTCTGAAAAGCTTCAACTGATTT
* *
22844542 ACAATCACAAATTTAAGATTACAACAGTT-ATTTTTACTAATGTCACGG-TCTGCAGATTTAGGA
324 ACAATCACAAATTTAAGATTACAA-AGTTCATTTTTACTAATATCACGGTTC-ACAGATTTAGGA
* * * *
22844605 TCACAACTTTTATTTTTA-AAGATCGTTGATTTACGATCATGAAGAC-T-T-C-G-TGGATTTAC
387 TCACAACTTTTATTTTTAGAA-ATCGCTGATTTACAATCATGAACACTTATACAGTTCGATTTAC
* *
22844664 G-TCGCAA-TTCAACATAAACAGTTCACTGATTTACGATCATAACT-TTCATTTTTAAAGCTCAT
451 GATCGCAACTT-AACATAAACAATTCACTGATTTACGATCACAACTATT-ATTTTTAAAGCTCAT
* * * * *
22844726 TAATTTACTACCATGTCTTTATTTTATC
514 TAATTTACAACCATGACCTTAGTTCATC
* * *
22844754 GATTTAAGATCATGAACTCTTCGTTGTTCACAATGAATGTAAATTTGCTAAAATAGGTCTAAGCA
1 GATTTAAGATCATGAACTATTCCTTGTTCACAATGAATGTAAATTT-CTAAAATAGTTCTAAGCA
* * * ***
22844819 TGGCCAGAGATGATTTTCAACTAACTAATTTTGACCTCTCGGCCCTTCAGAGCAAAGTAGATGCT
65 TGGCAAGAGATGATTTTCAACTAGCTAATTCTGACCTCTTTACCCTTCAGAGCAAAGTAGATGCT
* * * * *
22844884 AGAGATGATGAATATAGGCGT-TTGAGGAAGAACTCAAAAAT-AACCTAT-AAAGAAAGAAGATA
130 AGATATGATGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAA-CT-TGAAAGAAAGAGGATA
* * * * * * * *
22844946 CAAGACTCAATTTTGTTACATAGTCATTATGAGGCTGAAGCTACTT-CTCTTAATTGTTTGCTTG
193 TAGGACTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTA-TTACTCTTAATCGTATCCTTG
* * * *
22845010 AAATGAGACTTTAAATGG-TATGATCTGCTAAAAGAAACAGGGAACTTTCTGAAAAGCTT
257 AAATGAG-CTTGAAATGGAT-TGATCTGCTAAAA-AATCAAGGATCTTTCTGAAAAGCTT
22845069 TAGTGGAATT
Statistics
Matches: 734, Mismatches: 101, Indels: 44
0.84 0.11 0.05
Matches are distributed among these distances:
534 2 0.00
535 96 0.13
536 224 0.31
537 31 0.04
541 1 0.00
542 1 0.00
545 1 0.00
547 5 0.01
548 125 0.17
549 243 0.33
550 5 0.01
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (541 bp):
GATTTAAGATCATGAACTATTCCTTGTTCACAATGAATGTAAATTTCTAAAATAGTTCTAAGCAT
GGCAAGAGATGATTTTCAACTAGCTAATTCTGACCTCTTTACCCTTCAGAGCAAAGTAGATGCTA
GATATGATGAATATATGCGTGTTGAGGAAGAACTTAAAACTGAACTTGAAAGAAAGAGGATATAG
GACTCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTATTACTCTTAATCGTATCCTTGAAAT
GAGCTTGAAATGGATTGATCTGCTAAAAAATCAAGGATCTTTCTGAAAAGCTTCAACTGATTTAC
AATCACAAATTTAAGATTACAAAGTTCATTTTTACTAATATCACGGTTCACAGATTTAGGATCAC
AACTTTTATTTTTAGAAATCGCTGATTTACAATCATGAACACTTATACAGTTCGATTTACGATCG
CAACTTAACATAAACAATTCACTGATTTACGATCACAACTATTATTTTTAAAGCTCATTAATTTA
CAACCATGACCTTAGTTCATC
Found at i:22849028 original size:134 final size:134
Alignment explanation
Indices: 22848785--22849064 Score: 346
Period size: 134 Copynumber: 2.1 Consensus size: 134
22848775 GATTTATGAA
* * * *
22848785 CATGAACACTTTATTAAGAGTTCACCAATTTATGATCCCAACTCCACTTAAACAGTTCGTTGATT
1 CATGAACACTTCATTAAAAGTTCACAAATTTATGATCCCAACTCCACTTAAACAATTCGTTGATT
* * * * * * *
22848850 TATGATTACAACTATCATTTTTAAAGCTTGTTAACTTACGATCACTA-CTACTGTTCATTGATTT
66 TAAGATCACAACTATCATTTTTAAAGCTCGTCAACTTACAATCAC-AGCTACAGTTCAGTGATTT
22848914 AAAAT
130 AAAAT
* * ** *
22848919 CTTGAACACTTCATTAAAAGTTGACAAATTTATGATTGCAACTCCACTTAAGCAATTCGTTGATT
1 CATGAACACTTCATTAAAAGTTCACAAATTTATGATCCCAACTCCACTTAAACAATTCGTTGATT
* * * * *
22848984 TAAGATCACAACTTTCATTTTTAAAGCTCGTCGATTTACAATCACAGCTTCAGTTTAGTGATTTA
66 TAAGATCACAACTATCATTTTTAAAGCTCGTCAACTTACAATCACAGCTACAGTTCAGTGATTTA
*
22849049 AGAT
131 AAAT
22849053 CATGAACACTTC
1 CATGAACACTTC
22849065 TTGGTTCACA
Statistics
Matches: 122, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
133 1 0.01
134 121 0.99
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (134 bp):
CATGAACACTTCATTAAAAGTTCACAAATTTATGATCCCAACTCCACTTAAACAATTCGTTGATT
TAAGATCACAACTATCATTTTTAAAGCTCGTCAACTTACAATCACAGCTACAGTTCAGTGATTTA
AAAT
Found at i:22849752 original size:134 final size:134
Alignment explanation
Indices: 22849470--22849764 Score: 330
Period size: 134 Copynumber: 2.2 Consensus size: 134
22849460 TGACCATGGG
** *
22849470 TTCAGTTCATTGATTTAGTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATA
1 TTCAGTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCACCAATTTATGATCCCAAATA
* * * * * *
22849535 TACTTAAACAGTTCATTGATTTATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCA
66 CACTTAAACAATTCACTGATTTATGATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCA
22849600 CGAC
131 CGAC
* * * * *
22849604 TAT-TGTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTT-AGCCAATTTATGATCGCAAC
1 T-TCAGTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCA-CCAATTTATGATCCCAAA
* * *
22849667 TCCACTTAAGA-AATTCACTGATTTAAT-ATCACAACTGTCATTTTTAAAGCTCGCTGATTTACA
64 TACACTTAA-ACAATTCACTGATTT-ATGATCACAACTATCATTTTTAAAGCTCGCTAATTTACA
22849730 ATCAC-AGC
127 ATCACGA-C
* * *
22849738 TTCAGTTTAGTGATTTAAGATCATGAA
1 TTCAGTTCATTGATTTAAAATCATGAA
22849765 GTTCATTGAT
Statistics
Matches: 132, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
133 3 0.02
134 125 0.95
135 4 0.03
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.38
Consensus pattern (134 bp):
TTCAGTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCACCAATTTATGATCCCAAATA
CACTTAAACAATTCACTGATTTATGATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCA
CGAC
Found at i:22849912 original size:157 final size:157
Alignment explanation
Indices: 22849608--22849891 Score: 367
Period size: 157 Copynumber: 1.8 Consensus size: 157
22849598 CACGACTATT
* * * * *
22849608 GTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTTAGCCAATTTATGATCGCAACTCCACT
1 GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTAGCCAATTTATGATCCCAAATACACT
* *
22849673 TAAGAAATTCACTGATTTAATATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCACAGC
66 TAAGAAATTCACTGATTTAATATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCACAGC
*
22849738 TTCAGTTTAGTGATTTAAGATCATGAA
131 TTCAGTTCAGTGATTTAAGATCATGAA
** * *
22849765 GTTCATTGATTTACTATCATGAACACTTCATTAAGAGTTCA-CCAATTTATGATCCCAAATATAC
1 GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTT-AGCCAATTTATGATCCCAAATACAC
* * * * *
22849829 TTAA-ACAGTTCATTGATTT-ATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCAC
65 TTAAGA-AATTCACTGATTTAAT-ATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCAC
22849892 GACTATTGTT
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
156 3 0.03
157 104 0.96
158 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (157 bp):
GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTAGCCAATTTATGATCCCAAATACACT
TAAGAAATTCACTGATTTAATATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCACAGC
TTCAGTTCAGTGATTTAAGATCATGAA
Found at i:22849951 original size:134 final size:134
Alignment explanation
Indices: 22849765--22850060 Score: 323
Period size: 134 Copynumber: 2.2 Consensus size: 134
22849755 AGATCATGAA
** * *
22849765 GTTCATTGATTTACTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATATACT
1 GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCACCAATTTATGATCCCAAATACACT
* * * * *
22849830 TAA-ACAGTTCATTGATTT-ATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCACG
66 TAAGA-AATTCACTGATTTAAT-ATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCACG
22849893 ACTATT
129 ACTATT
* * ** * *
22849899 GTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTT-AGCCAATTTATGATTGCAACTCCAC
1 GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCA-CCAATTTATGATCCCAAATACAC
* *
22849963 TTAAGAAATTCACTGATTTAATATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATCAC-A
65 TTAAGAAATTCACTGATTTAATATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCACGA
*
22850027 GCT-TCA
130 -CTAT-T
* * *
22850033 GTTTAGTGATTTAAGATCATGAACACTT
1 GTTCATTGATTTAAAATCATGAACACTT
22850061 ATTGGTTCAC
Statistics
Matches: 134, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
133 3 0.02
134 128 0.96
135 3 0.02
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (134 bp):
GTTCATTGATTTAAAATCATGAACACTTCATTAAAAGTTCACCAATTTATGATCCCAAATACACT
TAAGAAATTCACTGATTTAATATCACAACTATCATTTTTAAAGCTCGCTAATTTACAATCACGAC
TATT
Found at i:22849997 original size:291 final size:291
Alignment explanation
Indices: 22849473--22850055 Score: 1148
Period size: 291 Copynumber: 2.0 Consensus size: 291
22849463 CCATGGGTTC
*
22849473 AGTTCATTGATTTAGTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATATAC
1 AGTTCATTGATTTACTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATATAC
22849538 TTAAACAGTTCATTGATTTATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCACGA
66 TTAAACAGTTCATTGATTTATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCACGA
22849603 CTATTGTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTTAGCCAATTTATGATCGCAACT
131 CTATTGTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTTAGCCAATTTATGATCGCAACT
22849668 CCACTTAAGAAATTCACTGATTTAATATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATC
196 CCACTTAAGAAATTCACTGATTTAATATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATC
22849733 ACAGCTTCAGTTTAGTGATTTAAGATCATGA
261 ACAGCTTCAGTTTAGTGATTTAAGATCATGA
22849764 AGTTCATTGATTTACTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATATAC
1 AGTTCATTGATTTACTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATATAC
22849829 TTAAACAGTTCATTGATTTATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCACGA
66 TTAAACAGTTCATTGATTTATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCACGA
*
22849894 CTATTGTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTTAGCCAATTTATGATTGCAACT
131 CTATTGTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTTAGCCAATTTATGATCGCAACT
22849959 CCACTTAAGAAATTCACTGATTTAATATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATC
196 CCACTTAAGAAATTCACTGATTTAATATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATC
22850024 ACAGCTTCAGTTTAGTGATTTAAGATCATGA
261 ACAGCTTCAGTTTAGTGATTTAAGATCATGA
22850055 A
1 A
22850056 CACTTATTGG
Statistics
Matches: 290, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
291 290 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (291 bp):
AGTTCATTGATTTACTATCATGAACACTTCATTAAGAGTTCACCAATTTATGATCCCAAATATAC
TTAAACAGTTCATTGATTTATGATCACAACTATCATTTTTAAAGTTCGTTAATTTACGATCACGA
CTATTGTTCATTGATTTAAAATCTTGATCACTTCATTAAAAGTTAGCCAATTTATGATCGCAACT
CCACTTAAGAAATTCACTGATTTAATATCACAACTGTCATTTTTAAAGCTCGCTGATTTACAATC
ACAGCTTCAGTTTAGTGATTTAAGATCATGA
Found at i:22851702 original size:134 final size:134
Alignment explanation
Indices: 22851451--22851804 Score: 408
Period size: 134 Copynumber: 2.6 Consensus size: 134
22851441 AATCCTCTGT
* * * *
22851451 TAATTTACAATT-ACAACTGTCATTTTTAAAGCTCACTGATTTA-AGATCACAGATTCAATTCAT
1 TAATTTAC-ATTCACAACTGTCATTTTTAAAGCTCGCTAATTTACA-ATCACAGCTTCAGTTCAT
* * *
22851514 TGATTTATGATCATGAAAACTTTATTAAGAGGTCACCGATTTACAATTGAAACTCCACCTAAGGA
64 TGATTTACGATCATGAAAACTTCATTAAGAGGTCACCAATTTACAATTGAAACTCCACCTAAGGA
22851579 GTTCAC
129 GTTCAC
* ** * * *
22851585 TGATTTATGTTTAC-AGTAGTCATTTTTAAAGCTCGCTAATTTACAATCATAGCTTCAGTTCATT
1 TAATTTACATTCACAACT-GTCATTTTTAAAGCTCGCTAATTTACAATCACAGCTTCAGTTCATT
* * * ** * * *
22851649 GATTTACGATCATGAATACTTCATTAAGTGTTCACCAATTTATGATTGCAACTCCACTTAAGTAG
65 GATTTACGATCATGAAAACTTCATTAAGAGGTCACCAATTTACAATTGAAACTCCACCTAAGGAG
22851714 TTCAC
130 TTCAC
* * * * *
22851719 TAATTTACATTCGCAACTGTTATTTTTAAACCTCGTTAATTTACAATCACGGCTTCAGTTCATTG
1 TAATTTACATTCACAACTGTCATTTTTAAAGCTCGCTAATTTACAATCACAGCTTCAGTTCATTG
* *
22851784 ATTTACGATTATGAACACTTC
66 ATTTACGATCATGAAAACTTC
22851805 TTGGTTTAAA
Statistics
Matches: 183, Mismatches: 33, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
133 4 0.02
134 176 0.96
135 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (134 bp):
TAATTTACATTCACAACTGTCATTTTTAAAGCTCGCTAATTTACAATCACAGCTTCAGTTCATTG
ATTTACGATCATGAAAACTTCATTAAGAGGTCACCAATTTACAATTGAAACTCCACCTAAGGAGT
TCAC
Found at i:22853178 original size:134 final size:131
Alignment explanation
Indices: 22852868--22853202 Score: 314
Period size: 134 Copynumber: 2.5 Consensus size: 131
22852858 ATCAAAAATT
* * * * *
22852868 TCATTTTTAAAACTTGATGATTTACAATCATGGGTTCAGTTCATTGATTTACGATCATGAACGCT
1 TCATTTTT-AAAGTT-ATGATTTACAATCA-AGCTTCAGTTCATTGATTTAAGATCATGAACACT
* * * * * *
22852933 TTATTAAGAGTTCACCAACTTATGATCCCAACTCCACTTAAACAGTTCGTTGATTTATGATCACA
63 TCATTAAAAGCTCACCAACTTATGATCCCAACTCCACTTAAACAATTCGCTGATTCATGATCACA
22852998 ACTA
128 ACTA
* * * * * * * *
22853002 TCATTTTTAAAGCTTGTTAATTTACTATCATGACTAT-TGTTCATTAATTTAAAATCTTGAACAC
1 TCATTTTTAAAG-TT-ATGATTTACAATCAAG-CT-TCAGTTCATTGATTTAAGATCATGAACAC
** * * * *
22853066 TTCATTAAAAGCTGGCCAATTTATGATCGCAACTCCACTTAAGCAATTCGCTGATTGCA-GATTA
62 TTCATTAAAAGCTCACCAACTTATGATCCCAACTCCACTTAAACAATTCGCTGATT-CATGATCA
*
22853130 CAACTG
126 CAACTA
*
22853136 TCATTTTTAAAGTTCACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACT
1 TCATTTTTAAAGTT-A-TGATTTACAATCA-AGCTTCAGTTCATTGATTTAAGATCATGAACACT
22853201 TC
63 TC
22853203 TTGCTTCACA
Statistics
Matches: 159, Mismatches: 35, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
133 7 0.04
134 149 0.94
135 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (131 bp):
TCATTTTTAAAGTTATGATTTACAATCAAGCTTCAGTTCATTGATTTAAGATCATGAACACTTCA
TTAAAAGCTCACCAACTTATGATCCCAACTCCACTTAAACAATTCGCTGATTCATGATCACAACT
A
Found at i:22853890 original size:398 final size:398
Alignment explanation
Indices: 22853150--22853903 Score: 1026
Period size: 398 Copynumber: 1.9 Consensus size: 398
22853140 TTTTAAAGTT
*
22853150 CACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACTTCTTGCTTCACAAT
1 CACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACTTCTTGCTTCACAAG
* *
22853215 GAATGTAAATTTGCTAAACTAGTTCTAAGCATGGTCATAAATAATTTTCAACTAGCTAATTCTAA
66 GAATGTAAATTTGCTAAACTAGTTCTAAGCATGGCCAGAAATAATTTTCAACTAGCTAATTCTAA
* * * * * **
22853280 CTTCTCTACCCTTCAGAGCAAGCCAGATCCTAAATATTATGAATATAGTCGTGTTGAGAAAGAAC
131 CCTCTCTACCCTTCAAAGCAAGCCAGATCCTAAAGATTATAAATATAGACGTGTCCAGAAAGAAC
* * *
22853345 TCAAAACTGACATTGAAAGAAAAATAATAGAGGAATCAATTTGTTACATTGTCTTTGTGATGCTA
196 TCAAAACTAACATTGAAAGAAAAATAATAGAGGAAACAATTTGTTACATTGTCTTTGTGAGGCTA
* * * * *
22853410 AAGCTACTTCTATTAACCGTATGCCTAAAATAAGGTTTAAAATGGATCGATCTGCTAAAAAAAAT
261 AAGCTACTTCTATTAACCGTACGCCTAAAAGAAGGCTTAAAATGGACCGATCTGATAAAAAAAAT
*
22853475 AAGGAAATTTCTGAAAAGCTTCAACTAATTTTTTATCATAACCTATTTATAGGATGTTACAAATC
326 AAGGAAATTTATGAAAAGCTTCAACTAATTTTTTATCATAACCTATTTATAGGATGTTACAAATC
22853540 TCACGGTC
391 TCACGGTC
** * * *
22853548 CACTGATTTACAATCATGGCTTCAGTTCATTGATTTATGATCATGAACACTTCTTAG-TTTACAA
1 CACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACTTCTT-GCTTCACAA
* * * * * *
22853612 GGAATGTAAATTTGCTGAACTAGTTCTAAGCGTGGCCAGAGATGATTTTCAACTAGCTAATTTTG
65 GGAATGTAAATTTGCTAAACTAGTTCTAAGCATGGCCAGAAATAATTTTCAACTAGCTAATTCTA
* * * ** * *
22853677 ACCTCTCTGCCTTTCAAAGCAGGTTAGATGCTAAAGATTATAAATATAGACGTGTCCAGGAAGAA
130 ACCTCTCTACCCTTCAAAGCAAGCCAGATCCTAAAGATTATAAATATAGACGTGTCCAGAAAGAA
* ** *
22853742 TTCAAAACTAACATTGAAAGAAGGATGATAGAGGAAACAATTTTGTTACATTGTCTTTGTGAGGC
195 CTCAAAACTAACATTGAAAGAAAAATAATAGAGGAAACAA-TTTGTTACATTGTCTTTGTGAGGC
* * * * * *
22853807 TAAAGCTACTTCTCTTCACCGTACGTCTAAAAGGAGGCTTGAAATGGACCTATCTGATAAAAAAA
259 TAAAGCTACTTCTATTAACCGTACGCCTAAAAGAAGGCTTAAAATGGACCGATCTGATAAAAAAA
* * *
22853872 CT-AGGAACTTTATGAAAAGCTTCAGCTAATTT
324 ATAAGGAAATTTATGAAAAGCTTCAACTAATTT
22853904 ATGGTCACGA
Statistics
Matches: 304, Mismatches: 50, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
398 225 0.74
399 79 0.26
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (398 bp):
CACTGATTTACAATCACAGCTTCAGTTCAGTGATTTAAGATCATGAACACTTCTTGCTTCACAAG
GAATGTAAATTTGCTAAACTAGTTCTAAGCATGGCCAGAAATAATTTTCAACTAGCTAATTCTAA
CCTCTCTACCCTTCAAAGCAAGCCAGATCCTAAAGATTATAAATATAGACGTGTCCAGAAAGAAC
TCAAAACTAACATTGAAAGAAAAATAATAGAGGAAACAATTTGTTACATTGTCTTTGTGAGGCTA
AAGCTACTTCTATTAACCGTACGCCTAAAAGAAGGCTTAAAATGGACCGATCTGATAAAAAAAAT
AAGGAAATTTATGAAAAGCTTCAACTAATTTTTTATCATAACCTATTTATAGGATGTTACAAATC
TCACGGTC
Found at i:22856026 original size:33 final size:33
Alignment explanation
Indices: 22855989--22856067 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
22855979 GTCGGGGTGT
* * **
22855989 GGCCATGTGGGCCGCACGGGCTAAACTGAATTA
1 GGCCATGTGGGCCACACAGGCTAAACCAAATTA
*
22856022 GGCCATGTGGACCACACAGGCTAAACCAAATTA
1 GGCCATGTGGGCCACACAGGCTAAACCAAATTA
* *
22856055 AGCCATATGGGCC
1 GGCCATGTGGGCC
22856068 TTACGGGAGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.29, C:0.27, G:0.28, T:0.16
Consensus pattern (33 bp):
GGCCATGTGGGCCACACAGGCTAAACCAAATTA
Found at i:22874771 original size:134 final size:135
Alignment explanation
Indices: 22874530--22874822 Score: 367
Period size: 134 Copynumber: 2.2 Consensus size: 135
22874520 CGGTCTGCTA
* * * *
22874530 ATTTACGATCATGGCTTCAGTTCATTGATTTTACAATCATGAACACTTCATTAAGAATTCACCGA
1 ATTTACAATCACGACTTCAGTTCATTGATTTTACAATCATGAACACTTCATTAAGAATTCACCAA
* *
22874595 TTTACGATCGCAACTCTACTTAACTAGTTTGCTAATTTACGATCACAACTGTCACTTTTAAAACT
66 TTTACGATCGCAACTCCACTTAACTAGTTCGCTAATTTACGATCACAACTGTCACTTTTAAAACT
* *
22874660 CGCTG
131 CACTC
* * * * ***
22874665 ATTTACAATGACGACTTCAGTTCATTGA-TTTACGATCTTGAACACTTTATT-AGATATTGGTCA
1 ATTTACAATCACGACTTCAGTTCATTGATTTTACAATCATGAACACTTCATTAAGA-ATTCACCA
* * *
22874728 ATTTATGATCGCAACTCCACTTAAGC-AGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAA
65 ATTTACGATCGCAACTCCACTTAA-CTAGTTCGCTAATTTACGATCACAACTGTCACTTTTAAAA
22874792 CTCACTC
129 CTCACTC
* *
22874799 ATTTACAATCACGGCTTCAATTCA
1 ATTTACAATCACGACTTCAGTTCA
22874823 CTACTTATGA
Statistics
Matches: 135, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
133 3 0.02
134 107 0.79
135 25 0.19
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (135 bp):
ATTTACAATCACGACTTCAGTTCATTGATTTTACAATCATGAACACTTCATTAAGAATTCACCAA
TTTACGATCGCAACTCCACTTAACTAGTTCGCTAATTTACGATCACAACTGTCACTTTTAAAACT
CACTC
Found at i:22874843 original size:97 final size:97
Alignment explanation
Indices: 22874730--22874919 Score: 260
Period size: 97 Copynumber: 2.0 Consensus size: 97
22874720 ATTGGTCAAT
* * *
22874730 TTATGATCGCAACTCCACTTA-AGCAGTTCGCT-GATTTACGATCACAACTGTCATTTTTAAAAC
1 TTATGATCGCAACTCCACTTATA-CAGTTC-ATAAATCTACGATCACAACTGTCATTTTTAAAAC
22874793 TCACTCATTTACAATCAC-GGCTTCAATTCACTAC
64 TCACTCATTTACAATC-CTGGCTTCAATTCACTAC
* * * *
22874827 TTATGATCGCAACTCCACTTATATAGTTCATAAATCTACGATCAGAACTGTCATTTTTAAAGCTT
1 TTATGATCGCAACTCCACTTATACAGTTCATAAATCTACGATCACAACTGTCATTTTTAAAACTC
*
22874892 ACTGATTTACAATCCTGGCTTCAATTCA
66 ACTCATTTACAATCCTGGCTTCAATTCA
22874920 TTGATTTACG
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
96 2 0.02
97 79 0.96
98 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.35
Consensus pattern (97 bp):
TTATGATCGCAACTCCACTTATACAGTTCATAAATCTACGATCACAACTGTCATTTTTAAAACTC
ACTCATTTACAATCCTGGCTTCAATTCACTAC
Found at i:22875558 original size:133 final size:134
Alignment explanation
Indices: 22875297--22875655 Score: 456
Period size: 133 Copynumber: 2.7 Consensus size: 134
22875287 CATGGTCTGC
* * ** * * *
22875297 TGATATACGATCACAACTGTCAATTTTAAAGCTTGTTGATTTATGATCA-AGACTTCAGTTTATT
1 TGATTTACAATCACAACTGTCTTTTTTAAAGCTCGTTGATTTACGATCACA-ACTTCAGTTAATT
*
22875361 GATTTACGATCATGAACACTTCATTAAGAGTTTGCCGATTTACAATCCCAACTCCACTTAAATAG
65 GATTTACGATCATGAACACTTCATTAAGAGTTTGCCGATTTACAATCACAACTCCACTTAAATAG
22875426 TTCGT
130 TTCGT
* * *
22875431 TGATTTACAGTCACAACT-T-TATTTTTAAAGCTCGTTGTTTTACGATCACAACTTCAGTTCATT
1 TGATTTACAATCACAACTGTCT-TTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTAATT
* * * *
22875494 GATTTACGGTCATGAACACTTTATTAAGAGTTTGCCGATTTACAATCACAAGTCTACTTAAATAG
65 GATTTACGATCATGAACACTTCATTAAGAGTTTGCCGATTTACAATCACAACTCCACTTAAATAG
22875559 TTCGT
130 TTCGT
* ** * *
22875564 TGATTTTCAATCACAACTGTCTTTTTTAAAGCTCACTGATTTACAATCACAACTTCAGATAATTG
1 TGATTTACAATCACAACTGTCTTTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTAATTG
* * *
22875629 ATTTATGATTATG-ACGATTTCATTAAG
66 ATTTACGATCATGAAC-ACTTCATTAAG
22875656 GATTTTAACA
Statistics
Matches: 193, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
133 119 0.62
134 73 0.38
135 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (134 bp):
TGATTTACAATCACAACTGTCTTTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTAATTG
ATTTACGATCATGAACACTTCATTAAGAGTTTGCCGATTTACAATCACAACTCCACTTAAATAGT
TCGT
Found at i:22876679 original size:2 final size:2
Alignment explanation
Indices: 22876637--22876661 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22876627 CCTTTAACCT
22876637 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
22876662 TTATTCTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22877002 original size:16 final size:16
Alignment explanation
Indices: 22876981--22877013 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22876971 TTTTAAACAC
22876981 ATATAATTAAATATAA
1 ATATAATTAAATATAA
*
22876997 ATATAATTATATATAA
1 ATATAATTAAATATAA
22877013 A
1 A
22877014 CACATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAATTAAATATAA
Found at i:22878018 original size:31 final size:31
Alignment explanation
Indices: 22877976--22878034 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
22877966 TAACGAAGAG
*
22877976 TGACCAAAATAGAAATAA-TCTAAAACGTAAA
1 TGACCAAAATAGAAAAAATTC-AAAACGTAAA
*
22878007 TGACCAGAATAGAAAAAATTCAAAACGT
1 TGACCAAAATAGAAAAAATTCAAAACGT
22878035 TAGTGACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 23 0.92
32 2 0.08
ACGTcount: A:0.56, C:0.14, G:0.12, T:0.19
Consensus pattern (31 bp):
TGACCAAAATAGAAAAAATTCAAAACGTAAA
Found at i:22881361 original size:15 final size:15
Alignment explanation
Indices: 22881341--22881373 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
22881331 TTGGATCACC
22881341 TTTAAAA-CATTTAGT
1 TTTAAAATCA-TTAGT
22881356 TTTAAAATCATTAGT
1 TTTAAAATCATTAGT
22881371 TTT
1 TTT
22881374 GGTCCACGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (15 bp):
TTTAAAATCATTAGT
Found at i:22882423 original size:24 final size:24
Alignment explanation
Indices: 22882378--22882424 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
22882368 ATATTAAAAG
*
22882378 ATATATATATAAAATGTATACATA
1 ATATATATATAAAATATATACATA
*
22882402 ATATA-ATATTAAAATATTTACAT
1 ATATATATA-TAAAATATATACAT
22882425 GGTATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
ATATATATATAAAATATATACATA
Found at i:22883011 original size:39 final size:38
Alignment explanation
Indices: 22882921--22883069 Score: 183
Period size: 39 Copynumber: 3.9 Consensus size: 38
22882911 TTCTACTCCT
* * * *
22882921 CCCATGCTACTTTGTTTTATTATTAATCAAAAAC-ACTC
1 CCCATACTATTTTGTTTTATTATTAAT-TAAAACTATTC
* * *
22882959 CCCATGCTTTTTTGTTTTATTGTTAATTAAAACTATTTC
1 CCCATACTATTTTGTTTTATTATTAATTAAAACTA-TTC
*
22882998 CCCATACTATTTTGTTTTATTGTTAATTAAAACTACTTC
1 CCCATACTATTTTGTTTTATTATTAATTAAAACTA-TTC
*
22883037 CTCATACTATTTTGTTTTATTATTAATTAAAAC
1 CCCATACTATTTTGTTTTATTATTAATTAAAAC
22883070 CATACTTTAT
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
37 5 0.05
38 25 0.25
39 69 0.70
ACGTcount: A:0.29, C:0.17, G:0.05, T:0.48
Consensus pattern (38 bp):
CCCATACTATTTTGTTTTATTATTAATTAAAACTATTC
Found at i:22884345 original size:45 final size:45
Alignment explanation
Indices: 22884277--22884362 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
22884267 CGATATCTGC
* * *
22884277 TATCTTTGATCTGCCCCTCGTCTACTACAGAGACGCCAAATCTAT
1 TATCTTCGATCTACCCCTCGTCTAATACAGAGACGCCAAATCTAT
22884322 TATCTTCGATCTACTCCCT-GTCTAATACAGAGACGCCAAAT
1 TATCTTCGATCTAC-CCCTCGTCTAATACAGAGACGCCAAAT
22884363 TTGCTTCTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 33 0.89
46 4 0.11
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (45 bp):
TATCTTCGATCTACCCCTCGTCTAATACAGAGACGCCAAATCTAT
Found at i:22884886 original size:210 final size:210
Alignment explanation
Indices: 22884576--22885010 Score: 676
Period size: 210 Copynumber: 2.1 Consensus size: 210
22884566 GATGCCAAAC
* * *
22884576 CATCTTGGATCCGCTTCAGCATTAACATCCGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCA
1 CATCTTGGATCTGCTTCAGCATAAACATCCGAAGGCAAGATCTGCTATGTGTCTGCTCTCCATCA
**
22884641 AAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTT
66 AAGTGAAGATGCCAAACTTCAATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTT
* * *
22884706 GCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCGAATACAG
131 GCTTCATCGAAAACACATGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAAG
*
22884771 AGAGATAAGATCTTT
196 AGAGATAAGATCTGT
* * * * *
22884786 CATCTTGGATCTGCTTCAGCGTAAACATCTGAGGGTAAGATCTGCTATGTGTCTGC-CTTCCATT
1 CATCTTGGATCTGCTTCAGCATAAACATCCGAAGGCAAGATCTGCTATGTGTCTGCTC-TCCATC
* * *
22884850 AAAGTGGAA-ATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAT
65 AAAGT-GAAGATGCCAAACTTCAATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGAT
*
22884914 TTGCTTCATCGAAAACACATGAAGGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAA
129 TTGCTTCATCGAAAACACATGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAA
22884979 AGAGAGATAAGATCTGT
194 AGAGAGATAAGATCTGT
22884996 CATCTTGGATCTGCT
1 CATCTTGGATCTGCT
22885011 ATGTGTCTGC
Statistics
Matches: 205, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
209 1 0.00
210 201 0.98
211 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (210 bp):
CATCTTGGATCTGCTTCAGCATAAACATCCGAAGGCAAGATCTGCTATGTGTCTGCTCTCCATCA
AAGTGAAGATGCCAAACTTCAATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTT
GCTTCATCGAAAACACATGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAAG
AGAGATAAGATCTGT
Found at i:22885125 original size:179 final size:179
Alignment explanation
Indices: 22884824--22885189 Score: 651
Period size: 179 Copynumber: 2.0 Consensus size: 179
22884814 CTGAGGGTAA
*
22884824 GATCTGCTATGTGTCTGCCTTCCATTAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
* * *
22884889 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACATGAAGGCCAAATCAGCTATAT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACATGAAAGACAAATCAACTATAT
22884954 CTTCGATCTGCTCCCTGCCGAATAAAGAGAGATAAGATCTGTCATCTTG
131 CTTCGATCTGCTCCCTGCCGAATAAAGAGAGATAAGATCTGTCATCTTG
* *
22885003 GATCTGCTATGTGTCTGCCTTCTATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
* *
22885068 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGACAAATCAACTATAT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACATGAAAGACAAATCAACTATAT
*
22885133 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTG
131 CTTCGATCTGCTCCCTGCCGAATAAAGAGAGATAAGATCTGTCATCTTG
22885182 GATCTGCT
1 GATCTGCT
22885190 TCAGCGTAAA
Statistics
Matches: 178, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
179 178 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (179 bp):
GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACATGAAAGACAAATCAACTATAT
CTTCGATCTGCTCCCTGCCGAATAAAGAGAGATAAGATCTGTCATCTTG
Found at i:22885333 original size:389 final size:389
Alignment explanation
Indices: 22884614--22885399 Score: 1387
Period size: 389 Copynumber: 2.0 Consensus size: 389
22884604 CCGAAGGCGA
*
22884614 GATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAAT
* *
22884679 ACAGAGACGAAAAATCATCTTAGATTTGCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATAT
66 ACAGAGACGAAAAATCATCTTAGATTTGCTTCATCGAAAACACGTGAAAGACAAATCAACTATAT
* *
22884744 CTTCGATCTGTTCCCTGCCGAATACAGAGAGATAAGATCTTTCATCTTGGATCTGCTTCAGCGTA
131 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
* *
22884809 AACATCTGAGGGTAAGATCTGCTATGTGTCTGCCTTCCATTAAAGTGGAAATGCCAGACTTCAAT
196 AACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAAT
*
22884874 TTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACATGAAGG
261 TTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACATGAAAG
22884939 CCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAAGAGAGATAAGATCTGTCATCTTG
326 CCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAAGAGAGATAAGATCTGTCATCTTG
* * *
22885003 GATCTGCTATGTGTCTGC-CTTCTATCAAAGTGGAA-ATGCCAGACTTCGATTTGTTCTCTGACA
1 GATCTGCTATGTGTCTGCTC-TCCATCAAAGT-GAAGATGCCAAACTTCGATTCGTTCTCTGACA
* *
22885066 ATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGACAAATCAACTAT
64 ATACAGAGACGAAAAATCATCTTAGATTTGCTTCATCGAAAACACGTGAAAGACAAATCAACTAT
22885131 ATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCG
129 ATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCG
*
22885196 TAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCG
194 TAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCA
* *
22885261 ATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAA
259 ATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACATGAA
*
22885326 AGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTT
324 AGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAAGAGAGATAAGATCTGTCATCTT
22885391 G
389 G
22885392 GATCTGCT
1 GATCTGCT
22885400 TCAGCGTAAA
Statistics
Matches: 378, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
388 1 0.00
389 374 0.99
390 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (389 bp):
GATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAAT
ACAGAGACGAAAAATCATCTTAGATTTGCTTCATCGAAAACACGTGAAAGACAAATCAACTATAT
CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
AACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAAT
TTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACACATGAAAG
CCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATAAAGAGAGATAAGATCTGTCATCTTG
Found at i:22885365 original size:210 final size:210
Alignment explanation
Indices: 22885003--22885813 Score: 1264
Period size: 210 Copynumber: 3.9 Consensus size: 210
22884993 TGTCATCTTG
*
22885003 GATCTGCTATGTGTCTGCCTTCTATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
*
22885068 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGACAAATCAACTATAT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAACTATAT
22885133 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
131 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
22885198 AACATCTGAAGGTAA
196 AACATCTGAAGGTAA
22885213 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
*
22885278 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATAT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAACTATAT
22885343 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
131 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
*
22885408 AACATTTGAAGGTAA
196 AACATCTGAAGGTAA
*
22885423 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
* * * * *
22885488 ACAGAGACAACAAATCATCTTAGATTTGTTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGT
66 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAACTATAT
* * * ** * *
22885553 CTTCGATTTGTTCCTTG-TAAACACA-AG-GATGCCAA-A-C---CATCTTGGATCCGCTTCAGC
131 CTTCGATCTGCTCCCTGCCGAATACAGAGAGAT---AAGATCTGTCATCTTGGATCTGCTTCAGC
* *
22885610 ATAAACATCTGAAGGTCA
193 GTAAACATCTGAAGGTAA
* * *
22885628 GATCTGCTATGTGTCTG-CTCTCCATCAAAGT-GAAGATGCCAAACTTCGATTCGTTCTCTAACA
1 GATCTGCTATGTGTCTGCCT-TCCATCAAAGTGGAA-ATGCCAGACTTCGATTTGTTCTCTGACA
*
22885691 ATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAACTAT
64 ATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAACTAT
* * * *
22885756 ATCTTGGATATGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTTAGATCTGC
129 ATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGC
22885814 CCCGATGAAG
Statistics
Matches: 549, Mismatches: 39, Indels: 26
0.89 0.06 0.04
Matches are distributed among these distances:
204 5 0.01
205 161 0.29
206 6 0.01
207 6 0.01
208 6 0.01
209 6 0.01
210 359 0.65
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (210 bp):
GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAACTATAT
CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
AACATCTGAAGGTAA
Found at i:22885780 original size:415 final size:418
Alignment explanation
Indices: 22885003--22885813 Score: 1269
Period size: 415 Copynumber: 1.9 Consensus size: 418
22884993 TGTCATCTTG
* *
22885003 GATCTGCTATGTGTCTGCCTTCTATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
* *
22885068 ACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGACAAATCAACTATAT
66 ACAGAGACAACAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGACAAATCAACTATAT
* * * *
22885133 CTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTA
131 CTTCGATCTGCTCCCTGCCAAACACAGAGAGATAAGATC--TCATCTTGGATCCGCTTCAGCATA
*
22885198 AACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCGAT
194 AACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAAACTTCGAT
* * *
22885263 TTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAG
259 TCGTTCTCTAACAATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAG
* * * *
22885328 CCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCTTGG
324 CCAAATCAACTATATCTTCGATATGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTTAG
22885393 ATCTGCTTCAGCGTAAACATTTGAAGGTAA
389 ATCTGCTTCAGCGTAAACATTTGAAGGTAA
22885423 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
1 GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
* * * *
22885488 ACAGAGACAACAAATCATCTTAGATTTGTTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGT
66 ACAGAGACAACAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGACAAATCAACTATAT
* * * *
22885553 CTTCGATTTGTTCCTTG-TAAACACA-AG-GATGCCAA-A-C-CATCTTGGATCCGCTTCAGCAT
131 CTTCGATCTGCTCCCTGCCAAACACAGAGAGAT---AAGATCTCATCTTGGATCCGCTTCAGCAT
*
22885612 AAACATCTGAAGGTCAGATCTGCTATGTGTCTG-CTCTCCATCAAAGT-GAAGATGCCAAACTTC
193 AAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCT-TCCATCAAAGTGGAA-ATGCCAAACTTC
22885675 GATTCGTTCTCTAACAATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
256 GATTCGTTCTCTAACAATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
*
22885740 AAGCCAAATCAACTATATCTTGGATATGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCT
321 AAGCCAAATCAACTATATCTTCGATATGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCT
22885805 TAGATCTGC
386 TAGATCTGC
22885814 CCCGATGAAG
Statistics
Matches: 360, Mismatches: 26, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
414 5 0.01
415 205 0.57
417 3 0.01
418 3 0.01
419 6 0.02
420 138 0.38
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (418 bp):
GATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGACTTCAATTTGTTCTCTGACAAT
ACAGAGACAACAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGACAAATCAACTATAT
CTTCGATCTGCTCCCTGCCAAACACAGAGAGATAAGATCTCATCTTGGATCCGCTTCAGCATAAA
CATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAAAGTGGAAATGCCAAACTTCGATTC
GTTCTCTAACAATACAAAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCC
AAATCAACTATATCTTCGATATGCTCCCCGCCGAATACAGAGAGATAAGATCTGTCATCTTAGAT
CTGCTTCAGCGTAAACATTTGAAGGTAA
Found at i:22893746 original size:13 final size:13
Alignment explanation
Indices: 22893728--22893756 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22893718 TTCTAGATTT
22893728 TCTTTTCTACCTC
1 TCTTTTCTACCTC
22893741 TCTTTTCTACCTC
1 TCTTTTCTACCTC
22893754 TCT
1 TCT
22893757 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.55
Consensus pattern (13 bp):
TCTTTTCTACCTC
Found at i:22895133 original size:26 final size:26
Alignment explanation
Indices: 22895096--22895179 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
22895086 TGATACAAAT
* *
22895096 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22895122 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22895148 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22895174 TGATAA
1 TGATAA
22895180 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:22914125 original size:26 final size:26
Alignment explanation
Indices: 22914088--22914171 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
22914078 TGATACAAAT
* *
22914088 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22914114 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22914140 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22914166 TGATAA
1 TGATAA
22914172 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:22919732 original size:24 final size:24
Alignment explanation
Indices: 22919687--22919733 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
22919677 TTATTAAAAG
*
22919687 ATATATATATAAAATGTATACATA
1 ATATATATATAAAATATATACATA
*
22919711 ATATA-ATATTAAAATATTTACAT
1 ATATATATA-TAAAATATATACAT
22919734 GGTATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
ATATATATATAAAATATATACATA
Found at i:22920333 original size:39 final size:38
Alignment explanation
Indices: 22920242--22920391 Score: 194
Period size: 39 Copynumber: 3.9 Consensus size: 38
22920232 ATTCCACTCC
* * * *
22920242 CCCCATGCTACTTTGTTTTATTATTAATCAAAAAC-ACT
1 CCCCATACTATTTTGTTTTATTATTAAT-TAAAACTATT
* *
22920280 CCCCATGCTATTTTGTTTTATTGTTAATTAAAACTATTT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTA-TT
*
22920319 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTA-TT
*
22920358 CCTCATACTATTTTGTTTTATTATTAATTAAAAC
1 CCCCATACTATTTTGTTTTATTATTAATTAAAAC
22920392 CATACTTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
37 5 0.05
38 27 0.26
39 70 0.69
ACGTcount: A:0.29, C:0.18, G:0.05, T:0.47
Consensus pattern (38 bp):
CCCCATACTATTTTGTTTTATTATTAATTAAAACTATT
Found at i:22931489 original size:11 final size:10
Alignment explanation
Indices: 22931463--22931487 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22931453 AATAAATCAC
22931463 AAAAAGAAAA
1 AAAAAGAAAA
22931473 AAAAAGAAAA
1 AAAAAGAAAA
22931483 AAAAA
1 AAAAA
22931488 AGCATAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:22931841 original size:277 final size:275
Alignment explanation
Indices: 22931349--22931907 Score: 1064
Period size: 277 Copynumber: 2.0 Consensus size: 275
22931339 CACCCCACAC
22931349 ACATCGAAAAAAGAGAAAATAAAAAAAATCTTAAACCTAAACATAAGACAAAGGAAGAATGAAAT
1 ACATCGAAAAAAGAGAAAATAAAAAAAATCTTAAACCTAAACATAAGACAAAGGAAGAATGAAAT
22931414 AAAAAAAATCAAGAAAAAGATAGAAAGCAAGAAGAAAAGAATAAATCACAAAAAGAAAAAAAAAG
66 AAAAAAAATCAAGAAAAAGATAGAAAGCAAGAAGAAAAGAATAAATCACAAAAAGAAAAAAAAAG
22931479 AAAAAAAAAAGCATAGATAGAACTCATCTTTTAGGGCTTCATGATTATTTGGGTATTGAAGCTTT
131 AAAAAAAAAAGCATAGATAGAACTCATCTTTTAGGGCTTCATGATTATTTGGGTATTGAAGCTTT
22931544 GTTCAACAATCCGAACAACCAAGGTAAAGAAGGGGTTGAGGAGAACAACATATCTCAAGCTTGCG
196 GTTCAACAATCCGAACAACCAAGGTAAAGAAGGGGTTGAGGAGAACAACATATCTCAAGCTTGCG
*
22931609 ACGATCTAATAGTGG
261 ACGATCTAACAGTGG
*
22931624 ACATCGAAAAAAGAGAAAATAAAAAAAAAGTCTTAAACCTAAACATACGACAAAGGAAGAATGAA
1 ACATCGAAAAAAGAGAAAAT-AAAAAAAA-TCTTAAACCTAAACATAAGACAAAGGAAGAATGAA
* *
22931689 ATAAAAAAAATCAAGAAAAAGATAGAAAGCAAGAAGAAAAGAATAAATCACAAAAATAATAAAAA
64 ATAAAAAAAATCAAGAAAAAGATAGAAAGCAAGAAGAAAAGAATAAATCACAAAAAGAAAAAAAA
22931754 AGAAAAAAAAAAGCATAGATAGAACTCATCTTTTAGGGCTTCATGATTATTTGGGTATTGAAGCT
129 AGAAAAAAAAAAGCATAGATAGAACTCATCTTTTAGGGCTTCATGATTATTTGGGTATTGAAGCT
22931819 TTGTTCAACAATCCGAACAACCAAGGTAAAGAAGGGGTTGAGGAGAACAACATATCTCAAGCTTG
194 TTGTTCAACAATCCGAACAACCAAGGTAAAGAAGGGGTTGAGGAGAACAACATATCTCAAGCTTG
22931884 CGACGATCTAACAGTGG
259 CGACGATCTAACAGTGG
22931901 ACATCGA
1 ACATCGA
22931908 CGGATTGGGG
Statistics
Matches: 278, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
275 20 0.07
276 8 0.03
277 250 0.90
ACGTcount: A:0.52, C:0.13, G:0.18, T:0.18
Consensus pattern (275 bp):
ACATCGAAAAAAGAGAAAATAAAAAAAATCTTAAACCTAAACATAAGACAAAGGAAGAATGAAAT
AAAAAAAATCAAGAAAAAGATAGAAAGCAAGAAGAAAAGAATAAATCACAAAAAGAAAAAAAAAG
AAAAAAAAAAGCATAGATAGAACTCATCTTTTAGGGCTTCATGATTATTTGGGTATTGAAGCTTT
GTTCAACAATCCGAACAACCAAGGTAAAGAAGGGGTTGAGGAGAACAACATATCTCAAGCTTGCG
ACGATCTAACAGTGG
Found at i:22934605 original size:22 final size:21
Alignment explanation
Indices: 22934575--22934629 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
22934565 CATGGATACG
* * *
22934575 AAATTTAATTTCAATTTTAGTA
1 AAATATAATTTCAATTTCA-AA
*
22934597 AAATATAATTTTGAATTTCAAA
1 AAATATAA-TTTCAATTTCAAA
22934619 AAATATAATTT
1 AAATATAATTT
22934630 TTTTAATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 3 0.11
22 16 0.57
23 9 0.32
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (21 bp):
AAATATAATTTCAATTTCAAA
Found at i:22935101 original size:14 final size:14
Alignment explanation
Indices: 22935083--22935124 Score: 52
Period size: 13 Copynumber: 3.0 Consensus size: 14
22935073 AAGTATTTTT
22935083 TTTTAATAATTT-A
1 TTTTAATAATTTAA
22935096 TCTTTAAT-ATTTAA
1 T-TTTAATAATTTAA
22935110 TTTTAATAATATTAA
1 TTTTAATAAT-TTAA
22935125 AATATTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 11 0.44
14 10 0.40
15 4 0.16
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTAATAATTTAA
Found at i:22937877 original size:22 final size:20
Alignment explanation
Indices: 22937851--22937895 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
22937841 ATTTTGGAGT
22937851 TTTAATTCTCTATACATTTTAA
1 TTTAATTCTCT-TAC-TTTTAA
*
22937873 TTTAATTTTCTTACTTTTAA
1 TTTAATTCTCTTACTTTTAA
22937893 TTT
1 TTT
22937896 CTGCTCTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.41
21 3 0.14
22 10 0.45
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTAATTCTCTTACTTTTAA
Found at i:22939324 original size:12 final size:13
Alignment explanation
Indices: 22939309--22939366 Score: 55
Period size: 15 Copynumber: 4.2 Consensus size: 13
22939299 ATGTGTTTAG
22939309 TTTATTTT-TTAT
1 TTTATTTTATTAT
*
22939321 TTTATATTATAGTAT
1 TTTAT-TT-TATTAT
*
22939336 TTAATTTTATTAT
1 TTTATTTTATTAT
22939349 TATTATTATTATTAT
1 T-TTATT-TTATTAT
22939364 TTT
1 TTT
22939367 TACATTAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 5 0.14
13 8 0.22
14 9 0.24
15 15 0.41
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.71
Consensus pattern (13 bp):
TTTATTTTATTAT
Found at i:22941497 original size:68 final size:67
Alignment explanation
Indices: 22941406--22941675 Score: 271
Period size: 72 Copynumber: 3.8 Consensus size: 67
22941396 AAGTAGTATC
*
22941406 AAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAAATAGATAAAACAAATATACATAA
1 AAATTT-AAGATTTAAAAAGTAAAAGAATAATAAATAAATAAATAGATAAAACAAATATA-ATAA
22941471 TATT
64 TATT
* *
22941475 AAATTTAAGATTTAAGAAGTAAAAGGACAATAAATAAATAAATAAATCGATAAAACAAATATAAA
1 AAATTTAAGATTTAAAAAGTAAAA-G--AAT-AATAAATAAATAAATAGATAAAACAAATAT-AA
*
22941540 TAAGATT
61 TAATATT
* * *
22941547 AAATTTAAGTGTTTTAAAAGTAAAAGAATAATAAATAAATAAATA-A-AAGAA-TAATA-AATAA
1 AAATTTAAG-ATTTAAAAAGTAAAAGAATAATAAATAAATAAATAGATAA-AACAAATATAAT-A
22941608 ATCGATT
63 AT--ATT
*
22941615 AAATTTAAG-TGTTAAAAAAGTAAAAGAATAATAAACAAATAGATAAATAGATAAAACAAAT
1 AAATTTAAGAT-TT-AAAAAGTAAAAGAATAAT----AAATAAATAAATAGATAAAACAAAT
22941676 GTAAAAGGAT
Statistics
Matches: 169, Mismatches: 13, Indels: 33
0.79 0.06 0.15
Matches are distributed among these distances:
65 3 0.02
66 3 0.02
67 8 0.05
68 48 0.28
69 22 0.13
70 3 0.02
71 3 0.02
72 58 0.34
73 16 0.09
74 5 0.03
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (67 bp):
AAATTTAAGATTTAAAAAGTAAAAGAATAATAAATAAATAAATAGATAAAACAAATATAATAATA
TT
Found at i:22941570 original size:141 final size:140
Alignment explanation
Indices: 22941406--22941680 Score: 353
Period size: 141 Copynumber: 1.9 Consensus size: 140
22941396 AAGTAGTATC
22941406 AAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAAATAGATAA-AACAAATATACAT-
1 AAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAAATA-A-AAGAA-AAATA-A-ATA
* * * *
22941469 AAT-ATTAAATTTAAGAT-TT-AAGAAGTAAAAGGACAATAAATAAATAAATAAATCGATAAAAC
61 AATCATTAAATTTAAG-TGTTAAAAAAGTAAAAGAACAATAAACAAATAAATAAATAGATAAAAC
22941531 AAATATAAATAAGATT
125 AAATATAAATAAGATT
* * * *
22941547 AAATTTAAGTGTTTTAAAAGTAAAAGAATAATAAATAAATAAATAAAAGAATAATAAATAAATCG
1 AAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAAATAAAAGAAAAATAAATAAATC-
* * *
22941612 ATTAAATTTAAGTGTTAAAAAAGTAAAAGAATAATAAACAAATAGATAAATAGATAAAACAAATG
65 ATTAAATTTAAGTGTTAAAAAAGTAAAAGAACAATAAACAAATAAATAAATAGATAAAACAAATA
22941677 TAAA
130 TAAA
22941681 AGGATGAAAT
Statistics
Matches: 117, Mismatches: 11, Indels: 12
0.84 0.08 0.09
Matches are distributed among these distances:
137 2 0.02
138 4 0.03
139 7 0.06
140 17 0.15
141 87 0.74
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (140 bp):
AAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAAATAAAAGAAAAATAAATAAATCA
TTAAATTTAAGTGTTAAAAAAGTAAAAGAACAATAAACAAATAAATAAATAGATAAAACAAATAT
AAATAAGATT
Found at i:22941691 original size:72 final size:71
Alignment explanation
Indices: 22941406--22941691 Score: 309
Period size: 68 Copynumber: 4.1 Consensus size: 71
22941396 AAGTAGTATC
* *
22941406 AAATTTAAATATTTAAAAAGTAAAAG---AAT-AATAAATAAATAAATAGATAAAACAAATATAC
1 AAATTTAAGTGTTTAAAAAGTAAAAGAATAATAAATAAATAAATAAATAGATAAAACAAATATA-
*
22941467 ATAATATT
65 A-AAGATT
* * * * *
22941475 AAATTTAAG-ATTTAAGAAGTAAAAGGACAATAAATAAATAAATAAATCGATAAAACAAATATAA
1 AAATTTAAGTGTTTAAAAAGTAAAAGAATAATAAATAAATAAATAAATAGATAAAACAAATAT-A
22941539 ATAAGATT
65 A-AAGATT
* * *
22941547 AAATTTAAGTGTTTTAAAAGTAAAAGAATAATAAATAAATAAATAAA-AGA-ATAATAAATA-AA
1 AAATTTAAGTGTTTAAAAAGTAAAAGAATAATAAATAAATAAATAAATAGATAAAACAAATATAA
**
22941609 TCGATT
66 AAGATT
* * * *
22941615 AAATTTAAGTGTTAAAAAAGTAAAAGAATAATAAACAAATAGATAAATAGATAAAACAAATGTAA
1 AAATTTAAGTGTTTAAAAAGTAAAAGAATAATAAATAAATAAATAAATAGATAAAACAAATATAA
*
22941680 AAGGATG
66 AA-GATT
22941687 AAATT
1 AAATT
22941692 AATTAAATAA
Statistics
Matches: 183, Mismatches: 24, Indels: 17
0.82 0.11 0.08
Matches are distributed among these distances:
68 62 0.34
69 13 0.07
70 7 0.04
71 13 0.07
72 55 0.30
73 33 0.18
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.27
Consensus pattern (71 bp):
AAATTTAAGTGTTTAAAAAGTAAAAGAATAATAAATAAATAAATAAATAGATAAAACAAATATAA
AAGATT
Found at i:22942918 original size:18 final size:18
Alignment explanation
Indices: 22942895--22942930 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
22942885 TTTATTATTA
*
22942895 TTTTTTT-TATTTTGGTT
1 TTTTTTTCTATTTGGGTT
22942912 TTTTTTTCTATTTGGGTT
1 TTTTTTTCTATTTGGGTT
22942930 T
1 T
22942931 CTGTTTGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.06, C:0.03, G:0.14, T:0.78
Consensus pattern (18 bp):
TTTTTTTCTATTTGGGTT
Found at i:22943166 original size:44 final size:44
Alignment explanation
Indices: 22943117--22943520 Score: 300
Period size: 44 Copynumber: 9.1 Consensus size: 44
22943107 AAATGTATAG
* * * *
22943117 GATTTGTTGTTTCAATCTACTCCACTACAACTTTAGGGATATTA
1 GATTTGTTGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
* * * * *
22943161 GATTTGTAGCTTT-AATTTGCTCCATTGCAACTTCAGGGCA-ATGA
1 GATTTGTTG-TTTCAATCTACTCCACTGCAACTTCAGGG-AGATAA
* * * *
22943205 GACTCGTAT-CTTCAATCTACTCCACTGCAACTTCAGGGAGATGA
1 GATTTGT-TGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
* *** *
22943249 GATTGGTAACTTCAATCTACTCCACTACAACTTCAGGGAGATAA
1 GATTTGTTGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
* * ** * * * *
22943293 GATTTG-TGACTTCAATCTATTTTACTACAACTTTAGAGAGACAA
1 GATTTGTTG-TTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
* * * * * *
22943337 TATTTGCTATCATCAATCTACTCTACTGCAACTTCAGAGAGATAA
1 GATTTGTTGT-TTCAATCTACTCCACTGCAACTTCAGGGAGATAA
* * *
22943382 GATTTGTGGCTTT-AATCTGCTCCACTGCAACTTCAGAGAGATAA
1 GATTTGTTG-TTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
* *
22943426 GATTTACTAT-TTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
1 GATTT-GT-TGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
* * * *
22943471 GATTTGTGGCTTT-AATCTACTCCACTACAATTTTAGGGAGATAA
1 GATTTGTTG-TTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
*
22943515 TATTTG
1 GATTTG
22943521 CCACGATAAC
Statistics
Matches: 291, Mismatches: 54, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
43 3 0.01
44 209 0.72
45 78 0.27
46 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
GATTTGTTGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
Found at i:22943379 original size:89 final size:89
Alignment explanation
Indices: 22943117--22943521 Score: 368
Period size: 89 Copynumber: 4.6 Consensus size: 89
22943107 AAATGTATAG
* * * * * * * * * *
22943117 GATTTGTTG-TTTCAATCTACTCCACTACAACTTTAGGGATATTAGATTTG-TAGCTTTAATTTG
1 GATTTGTGGCTTT-AATCTACTCCACTACAACTTTAGAGAGATAATATTTGCTATCATCAATCTA
* *
22943180 CTCCATTGCAACTTCAGGGCA-ATGA
65 CTCCACTGCAACTTCAGGG-AGATAA
* * ** * * * * * * * * *
22943205 GACTCGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATGAGA-TTGGTAACTTCAATCTAC
1 GATTTGTGGCTTTAATCTACTCCACTACAACTTTAGAGAGATAATATTTGCTATCATCAATCTAC
*
22943269 TCCACTACAACTTCAGGGAGATAA
66 TCCACTGCAACTTCAGGGAGATAA
* * * ** *
22943293 GATTTGTGACTTCAATCTATTTTACTACAACTTTAGAGAGACAATATTTGCTATCATCAATCTAC
1 GATTTGTGGCTTTAATCTACTCCACTACAACTTTAGAGAGATAATATTTGCTATCATCAATCTAC
* *
22943358 TCTACTGCAACTTCAGAGAGATAA
66 TCCACTGCAACTTCAGGGAGATAA
* * * * * ** *
22943382 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTACTATTTTCAATCTGC
1 GATTTGTGGCTTTAATCTACTCCACTACAACTTTAGAGAGATAATATTTGCTATCATCAATCTAC
22943447 TCCACTGCAACTTCAGGGAGATAA
66 TCCACTGCAACTTCAGGGAGATAA
* *
22943471 GATTTGTGGCTTTAATCTACTCCACTACAATTTTAGGGAGATAATATTTGC
1 GATTTGTGGCTTTAATCTACTCCACTACAACTTTAGAGAGATAATATTTGC
22943522 CACGATAACT
Statistics
Matches: 255, Mismatches: 58, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
87 4 0.02
88 96 0.38
89 155 0.61
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (89 bp):
GATTTGTGGCTTTAATCTACTCCACTACAACTTTAGAGAGATAATATTTGCTATCATCAATCTAC
TCCACTGCAACTTCAGGGAGATAA
Found at i:22943488 original size:133 final size:132
Alignment explanation
Indices: 22943127--22943520 Score: 362
Period size: 133 Copynumber: 3.0 Consensus size: 132
22943117 GATTTGTTGT
* * * * * * * *
22943127 TTCAATCTACTCCACTACAACTTTAGGGATATTAGATTTGT-AGCTTTAATTTGCTCCATTGCAA
1 TTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTCTGA-CTTCAATCTGCTCCACTGCAA
* * * * *
22943191 CTTCAGGGCA-ATGAGACTCGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATGAGATTGG
65 CTTCAGGG-AGATAAGATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG
22943255 TAAC
129 TAAC
* * ** ** *
22943259 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTGACTTCAATCTATTTTACTACAAC
1 TTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTCTGACTTCAATCTGCTCCACTGCAAC
* * * * * * *
22943324 TTTAGAGAGACAATATTTGCTATCATCAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTGT
66 TTCAGGGAGATAAGATTTG-TATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT
**
22943389 GGC
130 AAC
* * * *
22943392 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTACT-ATTTTCAATCTGCTCCACTGCA
1 TTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTT-CTGA-CTTCAATCTGCTCCACTGCA
** * * * * *
22943456 ACTTCAGGGAGATAAGATTTGTGGCTTTAATCTACTCCACTACAATTTTAGGGAGATAATATTTG
64 ACTTCAGGGAGATAAGATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG
22943521 CCACGATAAC
Statistics
Matches: 207, Mismatches: 50, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
131 1 0.00
132 62 0.30
133 112 0.54
134 32 0.15
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.34
Consensus pattern (132 bp):
TTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTCTGACTTCAATCTGCTCCACTGCAAC
TTCAGGGAGATAAGATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA
AC
Found at i:22944109 original size:34 final size:30
Alignment explanation
Indices: 22944048--22944115 Score: 91
Period size: 34 Copynumber: 2.1 Consensus size: 30
22944038 GGCCTGAGTA
*
22944048 CAAACCCAAATGCCCAATACCAACAAAACC
1 CAAACCCAAATGCCCAATACAAACAAAACC
22944078 CAAATCCCAAATAGCCCAAATTACAAACAAAACC
1 CAAA-CCCAAAT-GCCC-AA-TACAAACAAAACC
22944112 CAAA
1 CAAA
22944116 ACCTAACCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
30 4 0.12
31 7 0.21
32 4 0.12
33 2 0.06
34 16 0.48
ACGTcount: A:0.53, C:0.35, G:0.03, T:0.09
Consensus pattern (30 bp):
CAAACCCAAATGCCCAATACAAACAAAACC
Found at i:22945321 original size:25 final size:29
Alignment explanation
Indices: 22945293--22945354 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
22945283 TAACACAATA
22945293 TATTTATTT-CTAT-T-AT-TATTATTAT
1 TATTTATTTACTATCTAATATATTATTAT
*
22945318 TA-TTATTTACTATCTAATATATTTTTAT
1 TATTTATTTACTATCTAATATATTATTAT
*
22945346 TATATATTT
1 TATTTATTT
22945355 TTTTTTGCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 6 0.20
25 6 0.20
26 1 0.03
27 2 0.07
28 10 0.33
29 5 0.17
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.65
Consensus pattern (29 bp):
TATTTATTTACTATCTAATATATTATTAT
Done.