Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 77 of 316
Found at i:22945540 original size:3 final size:3
Alignment explanation
Indices: 22945534--22945855 Score: 92
Period size: 3 Copynumber: 106.7 Consensus size: 3
22945524 TATTTTTACC
* * ** *
22945534 ATT ATT ATT ACT ATTT ATT TTT ACC ATT ATT ATT ACT ATT ATT -TT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
22945579 -TT CTT -TC ATT ATT ATT ACT A-T ATT ATT ATT TTT ATT TTCT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
* * * * * * **
22945622 ATT ATC ATT ATT ATT AAT ACT AAT ATT AAT ATT CTT ATT ATT CCT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** * * * *
22945670 ATT ATT -TT -TT ACT GCT AAT ATTT ATT ATC ATT ATT GTT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * *
22945714 ATT -TT -TT ACT ATT ATT ATTT ATT ATT ATT TTT ACT ACT ATT ACTT
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT A-TT
* * * *
22945759 A-T ATT CGTT ATT ATC ATT ATT AATT -TT AACTGT ATT -TT CTTT ACT
1 ATT ATT -ATT ATT ATT ATT ATT -ATT ATT -A-T-T ATT ATT -ATT ATT
* * * *
22945804 ATT ATT TTT ATT ATC ATT ATTT ATTT ATTT ATT ATT ATT GTC A-T ATT
1 ATT ATT ATT ATT ATT ATT A-TT A-TT A-TT ATT ATT ATT ATT ATT ATT
22945851 ATT AT
1 ATT AT
22945856 ATATGTTTTA
Statistics
Matches: 233, Mismatches: 65, Indels: 42
0.69 0.19 0.12
Matches are distributed among these distances:
2 22 0.09
3 178 0.76
4 30 0.13
5 2 0.01
6 1 0.00
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:22945544 original size:12 final size:12
Alignment explanation
Indices: 22945524--22945576 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
22945514 TTATTATTCG
*
22945524 TATTTTTACCAT
1 TATTATTACCAT
*
22945536 TATTATTACTATT
1 TATTATTACCA-T
*
22945549 TATTTTTACCAT
1 TATTATTACCAT
*
22945561 TATTATTACTAT
1 TATTATTACCAT
22945573 TATT
1 TATT
22945577 TTTTCTTTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
12 24 0.71
13 10 0.29
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTATTACCAT
Found at i:22945552 original size:25 final size:25
Alignment explanation
Indices: 22945524--22945605 Score: 112
Period size: 25 Copynumber: 3.2 Consensus size: 25
22945514 TTATTATTCG
22945524 TATTTTTACCATTATTATTACTATT
1 TATTTTTACCATTATTATTACTATT
22945549 TATTTTTACCATTATTATTACTA-T
1 TATTTTTACCATTATTATTACTATT
*
22945573 TATTTTTTCTTTCATTATTATTACTATAT
1 TATTTTTAC---CATTATTATTACTAT-T
22945602 TATT
1 TATT
22945606 ATTTTTATTT
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
24 9 0.18
25 23 0.45
27 14 0.27
29 5 0.10
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (25 bp):
TATTTTTACCATTATTATTACTATT
Found at i:22945704 original size:13 final size:13
Alignment explanation
Indices: 22945688--22945755 Score: 66
Period size: 13 Copynumber: 5.2 Consensus size: 13
22945678 TTACTGCTAA
* *
22945688 TATTTATTATCAT
1 TATTTACTATTAT
22945701 TATTGTTACTATTAT
1 TATT--TACTATTAT
*
22945716 TTTTTACTATTAT
1 TATTTACTATTAT
*
22945729 TATTTATTATTAT
1 TATTTACTATTAT
*
22945742 T-TTTACTACTAT
1 TATTTACTATTAT
22945754 TA
1 TA
22945756 CTTATATTCG
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
12 10 0.22
13 25 0.56
15 10 0.22
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.63
Consensus pattern (13 bp):
TATTTACTATTAT
Found at i:22945727 original size:25 final size:27
Alignment explanation
Indices: 22945699--22945755 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
22945689 ATTTATTATC
22945699 ATTATT-GTTACTATTATTTTT-TACT
1 ATTATTAGTTACTATTATTTTTATACT
* *
22945724 ATTATTATTTATTATTATTTTTACTACT
1 ATTATTAGTTACTATTATTTTTA-TACT
22945752 ATTA
1 ATTA
22945756 CTTATATTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 6 0.22
26 13 0.48
28 8 0.30
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (27 bp):
ATTATTAGTTACTATTATTTTTATACT
Found at i:22945760 original size:25 final size:26
Alignment explanation
Indices: 22945710--22945760 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
22945700 TTATTGTTAC
* *
22945710 TATTATTTTTTACTATTATTATTTAT
1 TATTATTTTTTACTACTATTACTTAT
22945736 TATTA-TTTTTACTACTATTACTTAT
1 TATTATTTTTTACTACTATTACTTAT
22945761 ATTCGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (26 bp):
TATTATTTTTTACTACTATTACTTAT
Found at i:22945780 original size:66 final size:67
Alignment explanation
Indices: 22945656--22945813 Score: 151
Period size: 66 Copynumber: 2.3 Consensus size: 67
22945646 ATTAATATTC
* * * * * *
22945656 TTATTATTCCTATTATTATTTTTTACTGCTAATATTTATTATCATTATTGTTACTATTATTTTTT
1 TTATTATT--TATTATTA-TTTTTACTACTAATACTTATTATCATTATTATCACTATTAATTTTA
22945721 AC-TA
63 ACGTA
* * *
22945725 TTATTATTTATTATTATTTTTACTACTATTACTTA-TATTCGTTATTATCATTATTAATTTTAAC
1 TTATTATTTATTATTATTTTTACTACTAATACTTATTA-TCATTATTATCACTATTAATTTTAAC
22945789 TGTA
65 -GTA
* *
22945793 TT-TTCTTTACTATTATTTTTA
1 TTATTATTTATTATTATTTTTA
22945814 TTATCATTAT
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
65 2 0.03
66 36 0.48
67 25 0.33
68 4 0.05
69 8 0.11
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (67 bp):
TTATTATTTATTATTATTTTTACTACTAATACTTATTATCATTATTATCACTATTAATTTTAACG
TA
Found at i:22958115 original size:15 final size:15
Alignment explanation
Indices: 22958095--22958124 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22958085 CCATTTTTTT
*
22958095 ATATTAGGATAATTA
1 ATATTAAGATAATTA
22958110 ATATTAAGATAATTA
1 ATATTAAGATAATTA
22958125 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:22964493 original size:6 final size:6
Alignment explanation
Indices: 22964482--22964543 Score: 52
Period size: 6 Copynumber: 9.2 Consensus size: 6
22964472 AGGCAACCCA
*
22964482 ATTTTT ATTTTT ATTTTT ATTTTAT TTATTTT ATCTTATT ATTTTATT
1 ATTTTT ATTTTT ATTTTT ATTTT-T AT-TTTT AT-TT-TT A-TTT-TT
22964530 ATTTATT ATTTTT A
1 ATTT-TT ATTTTT A
22964544 GATATTAATA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
6 20 0.41
7 16 0.33
8 12 0.24
9 1 0.02
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:22964510 original size:21 final size:21
Alignment explanation
Indices: 22964485--22964543 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 21
22964475 CAACCCAATT
22964485 TTTATTTTTATTTTTATTTTA
1 TTTATTTTTATTTTTATTTTA
22964506 TTTA-TTTTATCTTATTATTTTA
1 TTTATTTTTAT-TT-TTATTTTA
22964528 -TTATTTATTATTTTTA
1 TTTATTT-TTATTTTTA
22964544 GATATTAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
20 6 0.18
21 12 0.35
22 12 0.35
23 4 0.12
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTATTTTTATTTTTATTTTA
Found at i:22964515 original size:14 final size:14
Alignment explanation
Indices: 22964491--22964529 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
22964481 AATTTTTATT
22964491 TTTATTTTTATTTTA
1 TTTA-TTTTATTTTA
*
22964506 TTTATTTTATCTTA
1 TTTATTTTATTTTA
22964520 -TTATTTTATT
1 TTTATTTTATT
22964530 ATTTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 9 0.41
14 9 0.41
15 4 0.18
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:22964537 original size:15 final size:15
Alignment explanation
Indices: 22964490--22964541 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
22964480 CAATTTTTAT
22964490 TTTTATT-TTTATTTTA
1 TTTTATTATTTA--TTA
*
22964506 TTTATTTTATCTTATTA
1 TTT-TATTAT-TTATTA
22964523 TTTTATTATTTATTA
1 TTTTATTATTTATTA
22964538 TTTT
1 TTTT
22964542 TAGATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 10 0.32
16 8 0.26
17 9 0.29
18 1 0.03
19 3 0.10
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTATTATTTATTA
Found at i:22965473 original size:98 final size:97
Alignment explanation
Indices: 22965289--22965480 Score: 228
Period size: 98 Copynumber: 2.0 Consensus size: 97
22965279 TTAAGATTGC
* * *
22965289 GTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGTTGCCATCACTCTTCGCGTCAAAAGGTTCGAC
1 GTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGCCATCACTCTTCGCATCAAAAGGTTCAAC
* * * * *
22965354 ATGTTCTTAGGAAAAATAAAAAATAAAAAGTAT
66 A-GTACATAGCAAAAAGAAAAAAGAAAAAGTAT
* *
22965387 GTTGGGCTGAGTAACTGGGGTTTGGTGCTT-GGCTGTCATCACTCTTCGCATCAAAAGGTTCAAC
1 GTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGCCATCACTCTTCGCATCAAAAGGTTCAAC
22965451 A-TACATA-CACACATACAGAAAAAAGAAAAA
66 AGTACATAGCA-A-A-A-AGAAAAAAGAAAAA
22965481 AAAGAAAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
94 1 0.01
95 5 0.06
96 1 0.01
97 32 0.40
98 41 0.51
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (97 bp):
GTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGCCATCACTCTTCGCATCAAAAGGTTCAAC
AGTACATAGCAAAAAGAAAAAAGAAAAAGTAT
Found at i:22965509 original size:10 final size:9
Alignment explanation
Indices: 22965469--22965501 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
22965459 ACACATACAG
22965469 AAAAAAGAA
1 AAAAAAGAA
22965478 AAAAAAGAA
1 AAAAAAGAA
22965487 AAAAAAGAA
1 AAAAAAGAA
22965496 AAAAAA
1 AAAAAA
22965502 AGAGAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:22966101 original size:15 final size:15
Alignment explanation
Indices: 22966081--22966110 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22966071 CCATTTTTTT
*
22966081 ATATTAGGATAATTA
1 ATATTAAGATAATTA
22966096 ATATTAAGATAATTA
1 ATATTAAGATAATTA
22966111 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:22967355 original size:35 final size:34
Alignment explanation
Indices: 22967316--22967422 Score: 78
Period size: 35 Copynumber: 3.1 Consensus size: 34
22967306 GAAGTATAAG
22967316 TAATATCAAATTTAAATATTTAAAAAGTAAAAGAA
1 TAATAT-AAATTTAAATATTTAAAAAGTAAAAGAA
* ** * * *
22967351 TAATAAATAAA--TAGATAGATAAAAA--ATATGCA
1 TAAT--ATAAATTTAAATATTTAAAAAGTAAAAGAA
* *
22967383 TAATATTAAATTTAAGTATTTAAGAAGTAAAAGAA
1 TAATA-TAAATTTAAATATTTAAAAAGTAAAAGAA
22967418 TAATA
1 TAATA
22967423 AATAAATAAA
Statistics
Matches: 51, Mismatches: 14, Indels: 14
0.65 0.18 0.18
Matches are distributed among these distances:
30 1 0.02
31 4 0.08
32 8 0.16
33 9 0.18
34 11 0.22
35 13 0.25
36 3 0.06
37 2 0.04
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (34 bp):
TAATATAAATTTAAATATTTAAAAAGTAAAAGAA
Found at i:22974919 original size:18 final size:18
Alignment explanation
Indices: 22974884--22974923 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22974874 TGAAATAGTG
** *
22974884 TAATATTATATGATTATA
1 TAATATTATACAAGTATA
22974902 TAATATTATACAAGTATA
1 TAATATTATACAAGTATA
22974920 TAAT
1 TAAT
22974924 GCTAAAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (18 bp):
TAATATTATACAAGTATA
Found at i:22976029 original size:8 final size:9
Alignment explanation
Indices: 22975961--22976206 Score: 73
Period size: 9 Copynumber: 27.0 Consensus size: 9
22975951 TGTAATTTCA
22975961 AATTTTTAT
1 AATTTTTAT
22975970 AA--TTTAT
1 AATTTTTAT
**
22975977 GTTTTTTAT
1 AATTTTTAT
*
22975986 AAATTTTAT
1 AATTTTTAT
**
22975995 AAAAGTTTAT
1 -AATTTTTAT
*
22976005 AATTTATTAG
1 AATTT-TTAT
22976015 AATTTTTAT
1 AATTTTTAT
22976024 -ATTTTTAT
1 AATTTTTAT
22976032 AATTTTGTAT
1 AATTTT-TAT
*
22976042 GAACTTTTAT
1 -AATTTTTAT
*
22976052 ACGTTTTTAT
1 A-ATTTTTAT
**
22976062 AA--AATAT
1 AATTTTTAT
** * *
22976069 AAAATATAA
1 AATTTTTAT
22976078 AATATTTTAT
1 AAT-TTTTAT
22976088 -ATGTTTTATT
1 AAT-TTTTA-T
*
22976098 CA-TTTTAT
1 AATTTTTAT
****
22976106 AAAAAATA-
1 AATTTTTAT
22976114 AATTTTTTAT
1 AA-TTTTTAT
22976124 AAATTTTTAT
1 -AATTTTTAT
*
22976134 AATATTTAT
1 AATTTTTAT
22976143 AAGTTTTTAT
1 AA-TTTTTAT
*
22976153 GATTTTTTAT
1 -AATTTTTAT
*
22976163 AAGTTTATAT
1 AA-TTTTTAT
*
22976173 CAATTTTAAT
1 -AATTTTTAT
22976183 -A-TTTT-T
1 AATTTTTAT
*
22976189 AATTTTAAT
1 AATTTTTAT
22976198 AATTTTTAT
1 AATTTTTAT
22976207 GACTTTTAAT
Statistics
Matches: 172, Mismatches: 41, Indels: 48
0.66 0.16 0.18
Matches are distributed among these distances:
6 1 0.01
7 14 0.08
8 16 0.09
9 66 0.38
10 64 0.37
11 11 0.06
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (9 bp):
AATTTTTAT
Found at i:22976037 original size:17 final size:19
Alignment explanation
Indices: 22976000--22976037 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
22975990 TTTATAAAAG
22976000 TTTATAATTTATTAGAATT
1 TTTATAATTTATTAGAATT
*
22976019 TTTAT-ATTT-TTATAATT
1 TTTATAATTTATTAGAATT
22976036 TT
1 TT
22976038 GTATGAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 4 0.22
19 5 0.28
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (19 bp):
TTTATAATTTATTAGAATT
Found at i:22976158 original size:9 final size:9
Alignment explanation
Indices: 22976117--22976206 Score: 69
Period size: 10 Copynumber: 9.8 Consensus size: 9
22976107 AAAAATAAAT
22976117 TTTTTATAAA
1 TTTTTAT-AA
22976127 TTTTTATAA
1 TTTTTATAA
*
22976136 TATTTATAA
1 TTTTTATAA
*
22976145 GTTTTTATGAT
1 -TTTTTAT-AA
22976156 TTTTTATAA
1 TTTTTATAA
*
22976165 GTTTATATCAA
1 -TTTTTAT-AA
*
22976176 TTTTAAT-A
1 TTTTTATAA
22976184 -TTTT-TAA
1 TTTTTATAA
*
22976191 TTTTAATAA
1 TTTTTATAA
22976200 TTTTTAT
1 TTTTTAT
22976207 GACTTTTAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
6 1 0.02
7 4 0.06
8 4 0.06
9 20 0.32
10 31 0.49
11 3 0.05
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:22976194 original size:15 final size:16
Alignment explanation
Indices: 22976174--22976205 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
22976164 AGTTTATATC
22976174 AATTTTAAT-ATTTTT
1 AATTTTAATAATTTTT
22976189 AATTTTAATAATTTTT
1 AATTTTAATAATTTTT
22976205 A
1 A
22976206 TGACTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
AATTTTAATAATTTTT
Found at i:22990144 original size:17 final size:17
Alignment explanation
Indices: 22990124--22990177 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
22990114 GTTTATGCAC
22990124 ATAATTTTAATAATTTA
1 ATAATTTTAATAATTTA
* *
22990141 ATAA--CT-ATATTTTA
1 ATAATTTTAATAATTTA
*
22990155 TTAATTTTAATAATTTA
1 ATAATTTTAATAATTTA
22990172 ATAATT
1 ATAATT
22990178 ATATTTTATC
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
14 10 0.36
15 1 0.04
16 1 0.04
17 16 0.57
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (17 bp):
ATAATTTTAATAATTTA
Found at i:22990160 original size:31 final size:31
Alignment explanation
Indices: 22990125--22990186 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
22990115 TTTATGCACA
22990125 TAATTTTAATAATTTAATAACTATATTTTAT
1 TAATTTTAATAATTTAATAACTATATTTTAT
*
22990156 TAATTTTAATAATTTAATAATTATATTTTAT
1 TAATTTTAATAATTTAATAACTATATTTTAT
22990187 CTTTTATCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (31 bp):
TAATTTTAATAATTTAATAACTATATTTTAT
Found at i:22992142 original size:11 final size:11
Alignment explanation
Indices: 22992121--22992150 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
22992111 AATTTAAATA
22992121 TATAATTTTTT
1 TATAATTTTTT
22992132 T-TAATTTTTT
1 TATAATTTTTT
22992142 TATAATTTT
1 TATAATTTT
22992151 AATGGTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TATAATTTTTT
Found at i:22992195 original size:47 final size:48
Alignment explanation
Indices: 22992137--22992246 Score: 143
Period size: 47 Copynumber: 2.3 Consensus size: 48
22992127 TTTTTTTAAT
22992137 TTTTTTATAATTTTAATG-GTTTTAATTTTCTAAAAAATAG-TTCTAAA
1 TTTTTTATAATTTTAATGAGTTTTAATTTT-TAAAAAATAGATTCTAAA
* * * *
22992184 TTTTTTGTAATTTTAATGATTTTTAATTTTTAAAAAATAGATTTTATA
1 TTTTTTATAATTTTAATGAGTTTTAATTTTTAAAAAATAGATTCTAAA
*
22992232 TTTTTTTTAAATTTT
1 TTTTTTAT-AATTTT
22992247 TTAAATTTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
47 27 0.49
48 22 0.40
49 6 0.11
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (48 bp):
TTTTTTATAATTTTAATGAGTTTTAATTTTTAAAAAATAGATTCTAAA
Found at i:22992256 original size:48 final size:48
Alignment explanation
Indices: 22992137--22992257 Score: 122
Period size: 48 Copynumber: 2.5 Consensus size: 48
22992127 TTTTTTTAAT
* **
22992137 TTTTTTATAATTTTAAT-GGTTTTAATTTTCTAAAAAATAGTTCTAAA
1 TTTTTTGTAATTTTAATAAATTTTAATTTTCTAAAAAATAGTTCTAAA
* * * *
22992184 TTTTTTGTAATTTTAATGATTTTTAATTTT-TAAAAAATAGATTTTATA
1 TTTTTTGTAATTTTAATAAATTTTAATTTTCTAAAAAATAG-TTCTAAA
* *
22992232 TTTTTTTTAAATTTT-TTAAATTTTAA
1 TTTTTTGT-AATTTTAATAAATTTTAA
22992258 AAAATTAGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
47 26 0.42
48 30 0.48
49 6 0.10
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.59
Consensus pattern (48 bp):
TTTTTTGTAATTTTAATAAATTTTAATTTTCTAAAAAATAGTTCTAAA
Found at i:22994557 original size:17 final size:18
Alignment explanation
Indices: 22994519--22994559 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
22994509 GAATTCTTGT
*
22994519 TAAAATAAAATACAGTAG
1 TAAAATAAAATACAGAAG
22994537 TAAAATAAAATACA-AAG
1 TAAAATAAAATACAGAAG
22994554 TAAAAT
1 TAAAAT
22994560 CTATATAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.22
Consensus pattern (18 bp):
TAAAATAAAATACAGAAG
Found at i:22999808 original size:16 final size:17
Alignment explanation
Indices: 22999777--22999819 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
22999767 CAATTTCAAG
22999777 AAGCAATTATACAAATGA
1 AAGCAA-TATACAAATGA
*
22999795 AAGCAATA-ACAAATTA
1 AAGCAATATACAAATGA
*
22999811 AAGTAATAT
1 AAGCAATAT
22999820 TTAAAAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 14 0.64
17 2 0.09
18 6 0.27
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.23
Consensus pattern (17 bp):
AAGCAATATACAAATGA
Found at i:23001579 original size:147 final size:147
Alignment explanation
Indices: 23001096--23001586 Score: 642
Period size: 147 Copynumber: 3.3 Consensus size: 147
23001086 GGGAAATAAG
** * **
23001096 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACCACAACCGCCAACCTGCT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCT
* * *
23001161 ATCTTACTACCTTAGAGAGATAAGGCTTGGGACTTAAATCTGCTCCATTGCCGATACATGGAGAT
66 CTCTTACTACCTCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGAT
* **
23001226 AAAATTTGT-CATCCCCA
131 AAAATTT-TCCTTTTCCA
* * *
23001243 ATCTTCAATCTTCAGTTTGCTTCCTTGCTATCTGAGGAAGATAAGACTTCAATCTTCAACCTGCT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCT
* * *
23001308 CTCTTGCTACCTCAGAGAGATAAGGCCTTGAGGCTTAAATCTGCTCCATTGCCGGTACATGGAGA
66 CTCTTACTACCTCAGAGAGATAAGG-CTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGA
* ** *
23001373 TAAGATTCGCCTCTTCCA
130 TAAAATTTTCCTTTTCCA
* * *
23001391 ATCTTTAATCTTCAGTTTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACATGCT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCT
* * * *
23001456 CTCTTACTACATCAGAGAGATAAGGCTTGGGGCTTAAATATGCTCTATTACCGATACATGGAGAT
66 CTCTTACTACCTCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGAT
*
23001521 AATATTTTCCTTTTCCA
131 AAAATTTTCCTTTTCCA
* * * * * *
23001538 ATCTTCAATCTTCAGTCTACTTTCTTACTGCCTTAGAAAGATAAGACTT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTT
23001587 TGGGTTATTG
Statistics
Matches: 298, Mismatches: 44, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
147 168 0.56
148 130 0.44
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (147 bp):
ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCT
CTCTTACTACCTCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGAT
AAAATTTTCCTTTTCCA
Found at i:23003167 original size:19 final size:19
Alignment explanation
Indices: 23003121--23003169 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
23003111 GCAGAAAAAG
*
23003121 ATCAAAAGAGAGGCTACAA
1 ATCAAAAGGGAGGCTACAA
* *
23003140 ATCAAAAGGGGGGCTACGA
1 ATCAAAAGGGAGGCTACAA
23003159 ATCAAAAGGGA
1 ATCAAAAGGGA
23003170 AACCAACCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.47, C:0.14, G:0.29, T:0.10
Consensus pattern (19 bp):
ATCAAAAGGGAGGCTACAA
Found at i:23005925 original size:10 final size:9
Alignment explanation
Indices: 23005904--23005933 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
23005894 ATCAGGGACT
23005904 AAATTGTAA
1 AAATTGTAA
23005913 AAATTGTTAA
1 AAATTG-TAA
23005923 AAATTGTAA
1 AAATTGTAA
23005932 AA
1 AA
23005934 TTTAGGGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (9 bp):
AAATTGTAA
Found at i:23010847 original size:129 final size:129
Alignment explanation
Indices: 23010418--23010923 Score: 557
Period size: 129 Copynumber: 3.9 Consensus size: 129
23010408 TGATTATTCA
* ** ** *** * *
23010418 TTTAAAAATTCTTTAAAACGAAGGCGATGTTCGACATTTGGCAATTCACGGAATCGTGCCCTAAC
1 TTTAAAAACTCTTTAAAACGAAGGAAATACTCGGTGTTTGGCAATTC-GGGAATCGTGCCCTATC
* * * * * ** *
23010483 GTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCATTCATGT
65 GTGCTGGGTTGCAATCTCTCGTTTGTTCAAAACAATCGAATATTCCTTT-GGGTTTCATTCATGC
23010548 T
129 T
* * * *
23010549 TTCTAAAAACTCTTTAAAACGAAGGAAATATTCGATGATTGGCAATTCGGGGAATAGTGCCCTAT
1 TT-TAAAAACTCTTTAAAACGAAGGAAATACTCGGTGTTTGGCAATTC-GGGAATCGTGCCCTAT
* * *
23010614 CGTGTTTGGGTTGCAATCTCTCGTTTTTTCAAAACAATCGAATATTCCTCTGGTTGTTT-ATTCA
64 CGTG-CTGGGTTGCAATCTCTCGTTTGTTCAAAACAATCGAATATTCCTTTGG--GTTTCATTCA
23010678 TGCT
126 TGCT
* * * *
23010682 TTTAAAAATTCTTTAAAATGAAGGCAATACTCGGTGTTTGGCAAGTCGGGAATCGTGCCCTATCG
1 TTTAAAAACTCTTTAAAACGAAGGAAATACTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCG
** * * *
23010747 TGCTGGGTTGTGATTTCTTGTTTGTTCAAAACAATCGAATATTCCTTTGGGTTTCACTCATGCT
66 TGCTGGGTTGCAATCTCTCGTTTGTTCAAAACAATCGAATATTCCTTTGGGTTTCATTCATGCT
*** * * *
23010811 TTTAAAAACTCCCCAAAACGAAGGTAATACTAGGTGTTTAGCAATTCGGGAATCGTGCCCTATCG
1 TTTAAAAACTCTTTAAAACGAAGGAAATACTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCG
*
23010876 TGCTGGGTTGCAATCTC-CTGTTTGTTCAAAATAATCGAATATTCCTTT
66 TGCTGGGTTGCAATCTCTC-GTTTGTTCAAAACAATCGAATATTCCTTT
23010924 AGAATTTCAT
Statistics
Matches: 317, Mismatches: 52, Indels: 14
0.83 0.14 0.04
Matches are distributed among these distances:
128 4 0.01
129 106 0.33
130 41 0.13
131 21 0.07
132 94 0.30
133 48 0.15
134 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTTTAAAACGAAGGAAATACTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTGGGTTGCAATCTCTCGTTTGTTCAAAACAATCGAATATTCCTTTGGGTTTCATTCATGCT
Found at i:23014791 original size:25 final size:25
Alignment explanation
Indices: 23014757--23014806 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
23014747 TACTTTGGAA
23014757 GTAAGAATGCATTCGGCCTTGAGAC
1 GTAAGAATGCATTCGGCCTTGAGAC
23014782 GTAAGAATGCATTCGGCCTTGAGAC
1 GTAAGAATGCATTCGGCCTTGAGAC
23014807 AATCTATAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (25 bp):
GTAAGAATGCATTCGGCCTTGAGAC
Found at i:23021964 original size:40 final size:40
Alignment explanation
Indices: 23021864--23022088 Score: 222
Period size: 40 Copynumber: 5.7 Consensus size: 40
23021854 TTGAATGCTG
* * * * *
23021864 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * *
23021904 TCCGGACTAAGAT-CCGAAGGCCTTTGTTCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
23021944 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
23021984 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23022024 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
23022063 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
23022089 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 34 0.22
40 116 0.74
41 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23022106 original size:79 final size:80
Alignment explanation
Indices: 23021939--23022121 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
23021929 GTTCGAGATA
* * * *
23021939 CTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
23022004 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
23022019 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
23022083 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
23022098 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
23022122 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 26 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:23035035 original size:40 final size:40
Alignment explanation
Indices: 23034979--23035160 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
23034969 CTCGCACAAG
* * *
23034979 GCCTTC-GGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
23035018 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
23035058 G-CTTCGGGTCTTAGCCCGGATATAG-CAACTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
23035097 GCCTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAAT
23035137 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
23035161 CATTCGAATA
Statistics
Matches: 124, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 42 0.34
40 77 0.62
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:23035097 original size:79 final size:80
Alignment explanation
Indices: 23034979--23035160 Score: 246
Period size: 79 Copynumber: 2.3 Consensus size: 80
23034969 CTCGCACAAG
* *
23034979 GCCTTC-GGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC-GGATCTTAGCCCGGATAT
* *
23035042 AGTCGCTAGCACAAAT
65 AGTCACTAGCACAAAA
* *
23035058 G-CTTCGGGTCTTAGCCCGGATATAG-CAACTTGCACAAATGCCTTCGGATCTTAGTCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGATCTTAGCCCGGATAT
*
23035121 AGTCACTAGCATAAAA
65 AGTCACTAGCACAAAA
*
23035137 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
23035161 CATTCGAATA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
78 8 0.09
79 62 0.68
80 21 0.23
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATA
GTCACTAGCACAAAA
Found at i:23038305 original size:40 final size:40
Alignment explanation
Indices: 23038123--23038345 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
23038113 TCCTCGTTCA
* * * * *
23038123 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
23038162 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23038202 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23038242 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
23038282 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
23038322 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23038346 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23038354 original size:41 final size:41
Alignment explanation
Indices: 23038277--23038354 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23038267 TTAGTATCTC
* * *
23038277 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23038318 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23038355 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23046174 original size:40 final size:40
Alignment explanation
Indices: 23045993--23046214 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
23045983 TCCTCGTTCA
* * * *
23045993 AATGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
23046031 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23046071 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23046111 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
23046151 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
23046191 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23046215 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 22 0.14
39 15 0.09
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23046223 original size:41 final size:41
Alignment explanation
Indices: 23046146--23046223 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23046136 TTAGTATCTC
* * *
23046146 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23046187 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23046224 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23057662 original size:40 final size:40
Alignment explanation
Indices: 23057513--23057733 Score: 218
Period size: 39 Copynumber: 5.6 Consensus size: 40
23057503 TTGAATGCTG
* * * * *
23057513 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
23057553 TCCGGACTAAGAT-CCGAAGGCCTTTGT-CGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
23057592 TCCGGGTTAAGTCCC-AAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
23057631 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
23057671 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
23057710 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
23057734 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 10 0.06
39 76 0.48
40 65 0.41
41 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:23057671 original size:79 final size:79
Alignment explanation
Indices: 23057513--23057733 Score: 223
Period size: 79 Copynumber: 2.8 Consensus size: 79
23057503 TTGAATGCTG
* * * * * * * * *
23057513 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
* * **
23057577 TGT-CGAGATACTAAA
64 CGTGCGAGTTGTTAAA
* * *
23057592 TCCGGGTTAAGTCCC-AAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
23057656 GTGCGAGTTGTTAAA
65 GTGCGAGTTGTTAAA
* * *
23057671 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
23057734 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
77 1 0.01
78 35 0.29
79 75 0.63
80 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGTTGTTAAA
Found at i:23057753 original size:79 final size:80
Alignment explanation
Indices: 23057587--23057768 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
23057577 TGTCGAGATA
* * *
23057587 CTAAATCCGGGTTAAGTCCC-AAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
23057651 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
23057666 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
23057730 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
23057745 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
23057769 TACGTGATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
78 14 0.16
79 64 0.74
80 8 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:23065593 original size:39 final size:40
Alignment explanation
Indices: 23065389--23065611 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
23065379 TTGAATGCTG
* * * * * *
23065389 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
23065429 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
23065469 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
23065509 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
23065549 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
23065588 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23065612 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:23065631 original size:79 final size:80
Alignment explanation
Indices: 23065464--23065646 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
23065454 GTGCGAGATA
* * *
23065464 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
23065529 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
23065544 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
23065608 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
23065623 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
23065647 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:23067671 original size:51 final size:51
Alignment explanation
Indices: 23067579--23067707 Score: 129
Period size: 51 Copynumber: 2.5 Consensus size: 51
23067569 GGCTACACAC
* * * *
23067579 AGTACCACCCTTGT-AGTCAAAGCTACCTTATTCACAAAGTGGCCTTCACA-T
1 AGTACCACACTTGTGA-CCAAAGCTATCTTATTCACAAAGTGGCCTGCA-ATT
* *
23067630 AGTACCACATTTGTGACCAAAGCTATCTT-TTACACATAGTGGCCTGCAATT
1 AGTACCACACTTGTGACCAAAGCTATCTTATT-CACAAAGTGGCCTGCAATT
* * *
23067681 AGTATCACACTTGTGATCGAAGCTATC
1 AGTACCACACTTGTGACCAAAGCTATC
23067708 GGGTACGCAT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
50 3 0.05
51 61 0.94
52 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (51 bp):
AGTACCACACTTGTGACCAAAGCTATCTTATTCACAAAGTGGCCTGCAATT
Found at i:23093872 original size:94 final size:93
Alignment explanation
Indices: 23093751--23093963 Score: 268
Period size: 94 Copynumber: 2.3 Consensus size: 93
23093741 TGTGTGTGCT
* * *
23093751 AGTGTAAAACATGTCTTGGACATGCATCGACCACATT-A-TGAGAGCCAGTGTAAGACATGTCTA
1 AGTGTAAGACATGTCTAGGACATGCATCG---ACATTGAGTGAGAGCCAATGTAAGACATGTCTA
*
23093814 GGACATGCATCGGCCTCGAGATATACCAGCC
63 GGACATGCATCGGCCTCGAGATATACAAGCC
* * * * *
23093845 AGTGTACGACATGTCTAGGACATGCATCGATATTGATGTGAGAGCTAATGTAAGACCTGTCTGGG
1 AGTGTAAGACATGTCTAGGACATGCATCGACATTGA-GTGAGAGCCAATGTAAGACATGTCTAGG
*
23093910 ACATGCATCGGCCTCGAGATATACAAGCT
65 ACATGCATCGGCCTCGAGATATACAAGCC
* *
23093939 AGTGTAAGACCTGTCTGGGACATGC
1 AGTGTAAGACATGTCTAGGACATGC
23093964 CATCAGCTTT
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
91 4 0.04
92 1 0.01
94 98 0.95
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGCATCGACATTGAGTGAGAGCCAATGTAAGACATGTCTAGGA
CATGCATCGGCCTCGAGATATACAAGCC
Found at i:23094038 original size:49 final size:49
Alignment explanation
Indices: 23093751--23094104 Score: 189
Period size: 48 Copynumber: 7.5 Consensus size: 49
23093741 TGTGTGTGCT
* * * * * *
23093751 AGTGTAAAACATGTCTTGGACATG-CATCGACCAC-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCAATATATAAAAGCC
* * * * * **
23093797 AGTGTAAGACATGTCTAGGACATG-CATCGGCCTCGAGATATACCAGCC
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCAATATATAAAAGCC
* * * * * * * *
23093845 AGTGTACGACATGTCTAGGACATG-CATCGA--T-ATTGATGTGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCAAT-ATATAAAAGCC
* * * * * *
23093891 AATGTAAGACCTGTCTGGGACATG-CATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCAATATATAAAAGCC
* * * **** *
23093939 AGTGTAAGACCTGTCTGGGACATGCCATC-AGCT---T-TTTGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCAATATATAAAAGCC
* * *
23093983 AGTGTAAGACCTATCTGGGACATGACATCGACACT-AATATATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGACATCGAC-CTCAATATATAAAAGCC
* * * * * *
23094032 AGTGTAAGGCCTGTCTGGGACACGGCATCGGCCTCTATATATAAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCAATATATAAAAGCC
23094081 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACCTGTCTGGGACATG
23094105 GCATTGACTT
Statistics
Matches: 236, Mismatches: 59, Indels: 23
0.74 0.19 0.07
Matches are distributed among these distances:
44 30 0.13
45 1 0.00
46 64 0.27
47 1 0.00
48 71 0.30
49 69 0.29
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGACATCGACCTCAATATATAAAAGCC
Found at i:23094108 original size:49 final size:48
Alignment explanation
Indices: 23093893--23094160 Score: 192
Period size: 49 Copynumber: 5.6 Consensus size: 48
23093883 TGAGAGCTAA
* * *
23093893 TGTAAGACCTGTCTGGGACAT-GCATCGGCCTCGAGATATACAAG-CTAG
1 TGTAAGACCTGTCTGGGACATGGCATCGGCCT-TATATATAAAAGTC-AG
* * ****
23093941 TGTAAGACCTGTCTGGGACATGCCATCAG-CTT-T-T-TGTGTGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGGCCTTATATATAAAAGTCAG
* * * * * * *
23093985 TGTAAGACCTATCTGGGACATGACATCGACACTAATATATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGGC-CTTATATATAAAAGTCAG
* *
23094034 TGTAAGGCCTGTCTGGGACACGGCATCGGCCTCTATATATAAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGGCCT-TATATATAAAAGTCAG
* * *** *
23094083 TGTAAGACCTGTCTGGGACATGGCAT-TGACTT-TGATATGCTAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGGCCTTAT-ATATAAAAGTCAG
* *
23094130 TGTATGACCATGTCTGGGACATGGCGTCGGC
1 TGTAAGACC-TGTCTGGGACATGGCATCGGC
23094161 ATCTTATCCC
Statistics
Matches: 172, Mismatches: 37, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
44 29 0.17
45 2 0.01
46 3 0.02
47 19 0.11
48 45 0.26
49 74 0.43
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (48 bp):
TGTAAGACCTGTCTGGGACATGGCATCGGCCTTATATATAAAAGTCAG
Found at i:23100296 original size:8 final size:8
Alignment explanation
Indices: 23100283--23100309 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
23100273 GTGAAACAGC
23100283 AAAAGCTG
1 AAAAGCTG
23100291 AAAAGCTG
1 AAAAGCTG
23100299 AAAAGCTG
1 AAAAGCTG
23100307 AAA
1 AAA
23100310 TGTGGGCTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.11, G:0.22, T:0.11
Consensus pattern (8 bp):
AAAAGCTG
Found at i:23103113 original size:42 final size:40
Alignment explanation
Indices: 23103038--23103117 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 40
23103028 AAGTTTTTAC
* *
23103038 ACACGGGCTAAGGCACGGGCGTGTCCTGGCCGTGTGAAGG
1 ACACGGGCTAAGACACGGGAGTGTCCTGGCCGTGTGAAGG
* *
23103078 ACACGGGCCTGAGACACGGGAGTGTTCCTGTCCGTGTGAA
1 ACACGGG-CTAAGACACGGGAGTG-TCCTGGCCGTGTGAA
23103118 AACCCCTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 7 0.21
41 13 0.38
42 14 0.41
ACGTcount: A:0.19, C:0.25, G:0.39, T:0.17
Consensus pattern (40 bp):
ACACGGGCTAAGACACGGGAGTGTCCTGGCCGTGTGAAGG
Found at i:23108621 original size:49 final size:49
Alignment explanation
Indices: 23108455--23108679 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 49
23108445 TGAGGTCGCA
* * * * *
23108455 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * * **
23108506 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
* *
23108556 TGTGTAGTACTAAGTGCAGGATACTACATGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
23108605 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
23108654 TGTGTAGTATTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
23108680 AGCGTACTAG
Statistics
Matches: 151, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
49 77 0.51
50 42 0.28
51 32 0.21
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:23108635 original size:99 final size:101
Alignment explanation
Indices: 23108455--23108636 Score: 278
Period size: 99 Copynumber: 1.8 Consensus size: 101
23108445 TGAGGTCGCA
* **
23108455 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGATACTACACGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
*
23108520 TGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
66 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
* * * *
23108556 TGTGTAGTACTAAGTGCAGGATACTACATGTACCGGATAA-T-TGGTCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGATACTACACGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
23108619 TGCAGGCTACTACGTGTA
66 TGCAGGCTACTACGTGTA
23108637 CCGGATAATT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 38 0.52
100 1 0.01
101 34 0.47
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGATACTACACGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
Found at i:23111711 original size:15 final size:15
Alignment explanation
Indices: 23111691--23111727 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
23111681 TTGAATCTTG
23111691 GGTTTCTTTACTCTA
1 GGTTTCTTTACTCTA
* *
23111706 GGTTTCTTTATTCTG
1 GGTTTCTTTACTCTA
23111721 GGTTTCT
1 GGTTTCT
23111728 CTATCTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.08, C:0.16, G:0.19, T:0.57
Consensus pattern (15 bp):
GGTTTCTTTACTCTA
Found at i:23113484 original size:50 final size:49
Alignment explanation
Indices: 23113359--23113547 Score: 191
Period size: 50 Copynumber: 3.8 Consensus size: 49
23113349 TGAGGTCGCA
*** * * *
23113359 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-T-TGGTCACG
* * ** *
23113410 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACG
* * *
23113460 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACG
* *
23113509 TGTGTAGTACTATGTGCAGGCTACTA-AGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACA-TGTACCAGATA
23113548 GCTTTGGCTA
Statistics
Matches: 116, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 39 0.34
50 43 0.37
51 33 0.28
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACG
Found at i:23113546 original size:99 final size:101
Alignment explanation
Indices: 23113359--23113546 Score: 254
Period size: 99 Copynumber: 1.9 Consensus size: 101
23113349 TGAGGTCGCA
** *
23113359 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAAAACTGTGATCACATGTGTAGTACTAAG
* * *
23113424 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCATG
66 TGCAGGCTACTAAGCGTACCAGATGGTTAGGTCATG
* * * * * *
23113460 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAA-T-TGGTCGCATGTGTAGTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAAAACTGTGATCACATGTGTAGTACTAAG
23113523 TGCAGGCTACTAAGCGTACCAGAT
66 TGCAGGCTACTAAGCGTACCAGAT
23113547 AGCTTTGGCT
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
99 39 0.52
100 1 0.01
101 35 0.47
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAAAACTGTGATCACATGTGTAGTACTAAG
TGCAGGCTACTAAGCGTACCAGATGGTTAGGTCATG
Found at i:23117408 original size:18 final size:18
Alignment explanation
Indices: 23117385--23117427 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
23117375 TGGTGGATAA
*
23117385 TTTTTTGATTTTGTAAT-T
1 TTTTTTGATTTT-AAATAT
23117403 TTTTTT-ATTTTAAATAT
1 TTTTTTGATTTTAAATAT
23117420 TTTTTTGA
1 TTTTTTGA
23117428 GAACAAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 12 0.55
18 7 0.32
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (18 bp):
TTTTTTGATTTTAAATAT
Found at i:23123275 original size:59 final size:58
Alignment explanation
Indices: 23123199--23123363 Score: 188
Period size: 60 Copynumber: 2.8 Consensus size: 58
23123189 AGGGGTGTTA
23123199 CTTTTTCCTAATTGGTACCTAAACTTTTTTTGGTCCAATTTGGTACCTAAACTTGA-T
1 CTTTTTCCTAATTGGTACCTAAACTTTTTTTGGTCCAATTTGGTACCTAAACTTGACT
* * * ** * *
23123256 AGTTTTTCTTAAGTTGGTACTTAAACTTTTTGGGGGTCCAATTTGGTACTTGAACTTGACT
1 -CTTTTTCCTAA-TTGGTACCTAAACTTTTT-TTGGTCCAATTTGGTACCTAAACTTGACT
* * * *
23123317 CTTTTTCCTAATTTGGTACCTAATCTTTTTTTTGTTCGATTTGGTAC
1 CTTTTTCCTAA-TTGGTACCTAAACTTTTTTTGGTCCAATTTGGTAC
23123364 TTGTCAAACA
Statistics
Matches: 87, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
58 9 0.10
59 29 0.33
60 48 0.55
61 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (58 bp):
CTTTTTCCTAATTGGTACCTAAACTTTTTTTGGTCCAATTTGGTACCTAAACTTGACT
Found at i:23123759 original size:60 final size:56
Alignment explanation
Indices: 23123686--23123813 Score: 168
Period size: 59 Copynumber: 2.2 Consensus size: 56
23123676 TAATAAATTT
* *
23123686 AGGTACCAAATTGGGCCTAAAAAAAGTTTAGGTATCAAATTAGGA-AAAAGTGTAAAGTTC
1 AGGTACCAAATTGGGCC-AAAAAAAGTTCAGGTACCAAATTAGGACAAAA----AAAGTTC
* *
23123746 AGGTACCAAATTGGGCCAAAAAAAGTTCAGGTACCAAATTGGGACAAAAAAAGTTT
1 AGGTACCAAATTGGGCCAAAAAAAGTTCAGGTACCAAATTAGGACAAAAAAAGTTC
23123802 AGGTACCAAATT
1 AGGTACCAAATT
23123814 AGAAAAAAGT
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
56 18 0.29
59 24 0.38
60 21 0.33
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (56 bp):
AGGTACCAAATTGGGCCAAAAAAAGTTCAGGTACCAAATTAGGACAAAAAAAGTTC
Found at i:23123777 original size:28 final size:28
Alignment explanation
Indices: 23123686--23123813 Score: 150
Period size: 28 Copynumber: 4.4 Consensus size: 28
23123676 TAATAAATTT
*
23123686 AGGTACCAAATTGGGCCTAAAAAAAGTTT
1 AGGTACCAAATTGGGCC-AAAAAAAGTTC
* * *
23123715 AGGTATCAAATTAGG-AAAAAGTGTAAAGTTC
1 AGGTACCAAATTGGGCCAAAA----AAAGTTC
23123746 AGGTACCAAATTGGGCCAAAAAAAGTTC
1 AGGTACCAAATTGGGCCAAAAAAAGTTC
* *
23123774 AGGTACCAAATTGGGACAAAAAAAGTTT
1 AGGTACCAAATTGGGCCAAAAAAAGTTC
23123802 AGGTACCAAATT
1 AGGTACCAAATT
23123814 AGAAAAAAGT
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
27 4 0.05
28 45 0.53
29 13 0.15
31 19 0.22
32 4 0.05
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (28 bp):
AGGTACCAAATTGGGCCAAAAAAAGTTC
Found at i:23123913 original size:21 final size:20
Alignment explanation
Indices: 23123888--23123939 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
23123878 TCACTTTCAA
23123888 AAAAAAATTCAAAATATTT-T
1 AAAAAAA-TCAAAATATTTAT
**
23123908 TTAAAAATCAAAATATTTAT
1 AAAAAAATCAAAATATTTAT
23123928 AAAAAAAATCAA
1 -AAAAAAATCAA
23123940 CTTTTCATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 11 0.42
20 6 0.23
21 9 0.35
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAAAATCAAAATATTTAT
Found at i:23123932 original size:18 final size:20
Alignment explanation
Indices: 23123890--23123932 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
23123880 ACTTTCAAAA
*
23123890 AAAAATTCAAAATATTTTTT
1 AAAAATTCAAAATATTTTAT
23123910 AAAAA-TCAAAATA-TTTAT
1 AAAAATTCAAAATATTTTAT
23123928 AAAAA
1 AAAAA
23123933 AAATCAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 8 0.36
20 5 0.23
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAATTCAAAATATTTTAT
Found at i:23123932 original size:19 final size:20
Alignment explanation
Indices: 23123889--23123933 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
23123879 CACTTTCAAA
*
23123889 AAAAAATTCAAAATATTTTT
1 AAAAAATTCAAAATATTTAT
*
23123909 TAAAAA-TCAAAATATTTAT
1 AAAAAATTCAAAATATTTAT
23123928 AAAAAA
1 AAAAAA
23123934 AATCAACTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAATTCAAAATATTTAT
Found at i:23125333 original size:13 final size:13
Alignment explanation
Indices: 23125315--23125340 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23125305 TAGATTTTCC
23125315 CTTTATTATTTTT
1 CTTTATTATTTTT
23125328 CTTTATTATTTTT
1 CTTTATTATTTTT
23125341 TTTTGTTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTATTATTTTT
Found at i:23128544 original size:19 final size:19
Alignment explanation
Indices: 23128507--23128542 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23128497 TATAAAATTA
23128507 TTTAAAATTTTCATAAAAT
1 TTTAAAATTTTCATAAAAT
*
23128526 TTTAAGATTTTC-TAAAA
1 TTTAAAATTTTCATAAAA
23128543 ATATTCTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTAAAATTTTCATAAAAT
Found at i:23133672 original size:30 final size:31
Alignment explanation
Indices: 23133624--23133683 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
23133614 TTGTATAATA
* *
23133624 TCATATATATATCGATTCACTTTTAATAAAAT
1 TCATATATATAACGATTCA-ATTTAATAAAAT
23133656 TCATATA-ATAAC-ATTCAATTTAATAAAA
1 TCATATATATAACGATTCAATTTAATAAAA
23133684 AAAATATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 10 0.38
30 5 0.19
31 4 0.15
32 7 0.27
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.40
Consensus pattern (31 bp):
TCATATATATAACGATTCAATTTAATAAAAT
Found at i:23134747 original size:25 final size:25
Alignment explanation
Indices: 23134710--23134786 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
23134700 CACAACACAG
*
23134710 CTCTTATGAGCTTACCGATTTTCAA
1 CTCTTATGAGCTTACCGATTCTCAA
* *
23134735 CTTTTATGAGCTTACCGATTCTCAG
1 CTCTTATGAGCTTACCGATTCTCAA
* *
23134760 CTCATATGAGCTTA-CGATTCACAA
1 CTCTTATGAGCTTACCGATTCTCAA
23134784 CTC
1 CTC
23134787 ATGAAAGCAT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 11 0.24
25 34 0.76
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (25 bp):
CTCTTATGAGCTTACCGATTCTCAA
Found at i:23137916 original size:12 final size:12
Alignment explanation
Indices: 23137896--23137925 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23137886 TCAGGCTATT
*
23137896 ACACAGCCTAGC
1 ACACGGCCTAGC
23137908 ACACGGCCTAGC
1 ACACGGCCTAGC
23137920 ACACGG
1 ACACGG
23137926 GCATGTAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:23145657 original size:26 final size:26
Alignment explanation
Indices: 23145628--23145683 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
23145618 TGATACAAAT
23145628 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23145654 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23145680 TGAT
1 TGAT
23145684 TGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:23155133 original size:85 final size:83
Alignment explanation
Indices: 23155028--23155281 Score: 337
Period size: 85 Copynumber: 3.0 Consensus size: 83
23155018 AGATAAAAAC
* *
23155028 ATTTGCAGTTACTACTACTTGTTGTGAGTGCACAACATGGTTGTAGATTAAACAAACTGCCATTG
1 ATTTGCAGTTACTACCACTTGTTGTGAGTGCACAACAT-ATTG-AGATTAAACAAACTGCCATTG
23155093 GGTTTATGGACGAGCCACAT
64 GGTTTATGGACGAGCCACAT
* * * *
23155113 ATTTGCAGTTACTACCACTTGTTGTGAGTGCACAACATATTCGCGTATTAAACAAACTGTCACTA
1 ATTTGCAGTTACTACCACTTGTTGTGAGTGCACAACATATT-GAG-ATTAAACAAACTGCCATTG
*
23155178 GGTTTGTGGACGAGCCACAT
64 GGTTTATGGACGAGCCACAT
* * * *
23155198 ATTTGAAGTTACTACCACTTATTGTGAGTGCACAACATATTTGCACATTAAACAAATTGCCATTG
1 ATTTGCAGTTACTACCACTTGTTGTGAGTGCACAACATA-TTG-AGATTAAACAAACTGCCATTG
*
23155263 GGTTTTATGGATGAGCCAC
64 GG-TTTATGGACGAGCCAC
23155282 CACTTGTTTG
Statistics
Matches: 147, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
84 3 0.02
85 128 0.87
86 16 0.11
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (83 bp):
ATTTGCAGTTACTACCACTTGTTGTGAGTGCACAACATATTGAGATTAAACAAACTGCCATTGGG
TTTATGGACGAGCCACAT
Found at i:23157735 original size:41 final size:41
Alignment explanation
Indices: 23157679--23157869 Score: 219
Period size: 41 Copynumber: 4.7 Consensus size: 41
23157669 ATACATTAGT
* *
23157679 GGCGTTTTTGGTAAAACGCCGCT-AAACACAGAGCAATAGT
1 GGCGTTTTTGGTAAAACGCCGCTAAAAAACAGAGCAATAGC
* *
23157719 GGTGTTTTTTGGTAAAATGCCGCT-AAAAA-AGAGCAATAGC
1 GGCG-TTTTTGGTAAAACGCCGCTAAAAAACAGAGCAATAGC
* * *
23157759 GGCGTTTTTGGTCAAACGCTGCTAAAAAACGGAGCAATAGC
1 GGCGTTTTTGGTAAAACGCCGCTAAAAAACAGAGCAATAGC
* * *
23157800 GGCATTTTTGGTCAAACGCCGCTAAAAAACAAAGCAATAGC
1 GGCGTTTTTGGTAAAACGCCGCTAAAAAACAGAGCAATAGC
* **
23157841 GGCATTTTTTCTCAAAACGCCGC-AAAAAA
1 GGCGTTTTTGGT-AAAACGCCGCTAAAAAA
23157870 GTCATATAAC
Statistics
Matches: 131, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 16 0.12
40 21 0.16
41 85 0.65
42 9 0.07
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (41 bp):
GGCGTTTTTGGTAAAACGCCGCTAAAAAACAGAGCAATAGC
Found at i:23157776 original size:80 final size:82
Alignment explanation
Indices: 23157679--23157869 Score: 219
Period size: 80 Copynumber: 2.4 Consensus size: 82
23157669 ATACATTAGT
* * * ** *
23157679 GGCGTTTTTGGTAAAACGCCGCT-AAACACAGAGCAATAGTGGTGTTTTTTGGTAAAATGCCGCT
1 GGCGTTTTTGGTCAAACGCCGCTAAAAAACAGAGCAATAGCGG-CATTTTTGGTAAAACGCCGCT
*
23157743 -AAAAA-AGAGCAATAGC
65 AAAAAACAAAGCAATAGC
* * *
23157759 GGCGTTTTTGGTCAAACGCTGCTAAAAAACGGAGCAATAGCGGCATTTTTGGTCAAACGCCGCTA
1 GGCGTTTTTGGTCAAACGCCGCTAAAAAACAGAGCAATAGCGGCATTTTTGGTAAAACGCCGCTA
23157824 AAAAACAAAGCAATAGC
66 AAAAACAAAGCAATAGC
* **
23157841 GGCATTTTTTCTCAAAACGCCGC-AAAAAA
1 GGCGTTTTTGGTC-AAACGCCGCTAAAAAA
23157870 GTCATATAAC
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
80 38 0.41
81 21 0.23
82 26 0.28
83 8 0.09
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (82 bp):
GGCGTTTTTGGTCAAACGCCGCTAAAAAACAGAGCAATAGCGGCATTTTTGGTAAAACGCCGCTA
AAAAACAAAGCAATAGC
Found at i:23157905 original size:18 final size:18
Alignment explanation
Indices: 23157884--23157918 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23157874 TATAACCCCT
* *
23157884 AAAATCCTAAACTCTAAA
1 AAAATACTAAACACTAAA
23157902 AAAATACTAAACACTAA
1 AAAATACTAAACACTAA
23157919 TCTATAACCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAATACTAAACACTAAA
Found at i:23157958 original size:48 final size:47
Alignment explanation
Indices: 23157874--23157999 Score: 216
Period size: 48 Copynumber: 2.7 Consensus size: 47
23157864 AAAAAAGTCA
* *
23157874 TATAACCCCTAAAATCCTAAACTCTAAAAAAATACTAAACACTAATC
1 TATAACCCCTAAAACCCTAAACCCTAAAAAAATACTAAACACTAATC
23157921 TATAACCCCTAAAACCTCTAAACCCTAAAAAAATACTAAACACTAATC
1 TATAACCCCTAAAACC-CTAAACCCTAAAAAAATACTAAACACTAATC
*
23157969 TATAACCCCTAAAACCCTAAACCCCAAAAAA
1 TATAACCCCTAAAACCCTAAACCCTAAAAAA
23158000 CATCATATGG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
47 29 0.39
48 46 0.61
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (47 bp):
TATAACCCCTAAAACCCTAAACCCTAAAAAAATACTAAACACTAATC
Found at i:23158115 original size:7 final size:7
Alignment explanation
Indices: 23158104--23158167 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
23158094 TTTATTTTTG
*
23158104 GGTTTAG
1 GGTTTAA
23158111 GGTTTAA
1 GGTTTAA
**
23158118 TATTTAA
1 GGTTTAA
23158125 GGTTTAA
1 GGTTTAA
* *
23158132 GGTCTAT
1 GGTTTAA
*
23158139 GGTTTAG
1 GGTTTAA
*
23158146 GGTTTTAT
1 GG-TTTAA
23158154 GGTTTAA
1 GGTTTAA
23158161 GGTTTAA
1 GGTTTAA
23158168 TGGCCATGGG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.23, C:0.02, G:0.28, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:23158156 original size:15 final size:15
Alignment explanation
Indices: 23158120--23158170 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
23158110 GGGTTTAATA
*
23158120 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
23158134 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
23158149 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
23158164 TTAATGG
1 TTTATGG
23158171 CCATGGGTAG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:23158505 original size:7 final size:7
Alignment explanation
Indices: 23158472--23158541 Score: 61
Period size: 7 Copynumber: 9.9 Consensus size: 7
23158462 AGGGGTAGAA
23158472 GTTTAGG
1 GTTTAGG
*
23158479 GTTTATG
1 GTTTAGG
* *
23158486 TTTTATG
1 GTTTAGG
*
23158493 GCTTAGG
1 GTTTAGG
23158500 GTTTAGGG
1 GTTTA-GG
*
23158508 GTTAAGG
1 GTTTAGG
23158515 G-TTAGG
1 GTTTAGG
*
23158521 GGTTAGG
1 GTTTAGG
23158528 GTTTTAGG
1 G-TTTAGG
23158536 GTTTAG
1 GTTTAG
23158542 ATTAATTAGT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
6 5 0.10
7 34 0.67
8 12 0.24
ACGTcount: A:0.16, C:0.01, G:0.40, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:23158519 original size:21 final size:21
Alignment explanation
Indices: 23158446--23158538 Score: 62
Period size: 21 Copynumber: 4.4 Consensus size: 21
23158436 TGAACGAGGG
*
23158446 TAAGGGTTAGAGGTTAAGGGG-
1 TAAGGGTTAG-GGTTTAGGGGT
* * * **
23158467 TAGAAGTTTAGGGTTTATGTTT
1 TA-AGGGTTAGGGTTTAGGGGT
* *
23158489 TATGGCTTAGGGTTTAGGGGT
1 TAAGGGTTAGGGTTTAGGGGT
* *
23158510 TAAGGGTTAGGGGTTAGGGTT
1 TAAGGGTTAGGGTTTAGGGGT
*
23158531 TTAGGGTT
1 TAAGGGTT
23158539 TAGATTAATT
Statistics
Matches: 53, Mismatches: 17, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
21 45 0.85
22 8 0.15
ACGTcount: A:0.20, C:0.01, G:0.41, T:0.38
Consensus pattern (21 bp):
TAAGGGTTAGGGTTTAGGGGT
Found at i:23158646 original size:18 final size:16
Alignment explanation
Indices: 23158606--23158647 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
23158596 AGAGATAATA
23158606 TTAAATT-TAATATAT
1 TTAAATTATAATATAT
*
23158621 TAAAATTATGAATATAGT
1 TTAAATTAT-AATATA-T
23158639 TTAAATTAT
1 TTAAATTAT
23158648 TTAAGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 6 0.27
16 1 0.05
17 6 0.27
18 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (16 bp):
TTAAATTATAATATAT
Found at i:23159150 original size:37 final size:37
Alignment explanation
Indices: 23159100--23159228 Score: 204
Period size: 37 Copynumber: 3.5 Consensus size: 37
23159090 TTCGTTTGTT
*
23159100 GCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCATC
1 GCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATC
23159137 GCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATC
1 GCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATC
* * * *
23159174 GCCTTCACCCAGTGCATCACAACCCATCTCCTCTATC
1 GCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATC
*
23159211 GCCTTCGCCCTGTGCATC
1 GCCTTCGCCCCGTGCATC
23159229 TGCTGCATAG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.15, C:0.50, G:0.13, T:0.22
Consensus pattern (37 bp):
GCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATC
Found at i:23159575 original size:16 final size:16
Alignment explanation
Indices: 23159554--23159585 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23159544 AAAATCTTCA
23159554 AAAAAAATTAAAAATT
1 AAAAAAATTAAAAATT
*
23159570 AAAAAACTTAAAAATT
1 AAAAAAATTAAAAATT
23159586 TAATATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAAAAATTAAAAATT
Found at i:23160192 original size:14 final size:14
Alignment explanation
Indices: 23160173--23160201 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
23160163 AATTGGTATT
23160173 TCTGTGTGTGTGTG
1 TCTGTGTGTGTGTG
23160187 TCTGTGTGTGTGTG
1 TCTGTGTGTGTGTG
23160201 T
1 T
23160202 TTACTTATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.41, T:0.52
Consensus pattern (14 bp):
TCTGTGTGTGTGTG
Found at i:23165627 original size:13 final size:13
Alignment explanation
Indices: 23165609--23165634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23165599 GCTAAAGGTC
23165609 ATGACCTTTAGCG
1 ATGACCTTTAGCG
23165622 ATGACCTTTAGCG
1 ATGACCTTTAGCG
23165635 GCGTTTGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
ATGACCTTTAGCG
Found at i:23165660 original size:56 final size:56
Alignment explanation
Indices: 23165566--23165678 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
23165556 TTTAAATTTC
* *
23165566 ATGAACTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCG
1 ATGAACTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCAAGACCTTTAGCG
*
23165622 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCAAGACCTTTAGCG
1 ATGAACTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCAAGACCTTTAGCG
23165678 A
1 A
23165679 GTTTGTGGGC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (56 bp):
ATGAACTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCAAGACCTTTAGCG
Found at i:23165693 original size:42 final size:42
Alignment explanation
Indices: 23165624--23165719 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
23165614 CTTTAGCGAT
*
23165624 GACCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCAA
1 GACCTTTAGC-GAGTTTGTGGGAAAAGCGCCACTAAAGGTCAA
* * *
23165667 GACCTTTAGCGAGTTTGTGGGCAAAGCGCCGCTAAAGGTCAT
1 GACCTTTAGCGAGTTTGTGGGAAAAGCGCCACTAAAGGTCAA
23165709 GACCTTTAGCG
1 GACCTTTAGCG
23165720 GCATTTTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 39 0.80
43 10 0.20
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (42 bp):
GACCTTTAGCGAGTTTGTGGGAAAAGCGCCACTAAAGGTCAA
Found at i:23168508 original size:8 final size:8
Alignment explanation
Indices: 23168495--23168519 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23168485 ATGGTTGTGA
23168495 GTTAGTGG
1 GTTAGTGG
23168503 GTTAGTGG
1 GTTAGTGG
23168511 GTTAGTGG
1 GTTAGTGG
23168519 G
1 G
23168520 AGAAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.52, T:0.36
Consensus pattern (8 bp):
GTTAGTGG
Found at i:23178181 original size:273 final size:271
Alignment explanation
Indices: 23177641--23178190 Score: 924
Period size: 273 Copynumber: 2.0 Consensus size: 271
23177631 CAATTTGAGT
*
23177641 AAATTCAAGCACAGAATCAACAAATTCATATGCAAATTTGAAGTCTCATGACTTTTATTTAGCCG
1 AAATTCAAGCACAGAATCAACAAATTCATACGCAAATTTGAAGTCTCATGACTTTTATTTAGCCG
* * * * *
23177706 TAATCTTGACCACCAATGAGTTAGGTATTCTTTTTTACGTTCATACGGTTCGAACTTTATTATCT
66 CAACCTTGACCACCAATGACTTAGGTATTCTTTTTTACGTTCATACGGTTCAAACGTTATTATCT
23177771 CGGTAGAATTTGAATTAAAACATGTAATGAATATGTATTTGAACATTAAGTATTTTACTAAGAAT
131 CGGTAGAATTTGAATTAAAACATGTAATGAATATGTATTTGAACATTAAGTATTTTACTAAGAAT
* * *
23177836 ATGTATTTGGACAGTTTTTTTTTGTTTAATGGATTAGGGACATGTAATGAAAATATAAAATATAA
196 ACGTATTTGGACAGTTTTTTTTTGTTTAATGGATTAGGAAAATGTAATGAAAATATAAAATAT--
23177901 AAAAAAAAGAAAGA
259 AAAAAAAA-AAAGA
*
23177915 AAATTCAAGCACAGAATCAACAAATTCATACGCAAATTTGAAGTCTCATGACTTTTA-TTAGTCG
1 AAATTCAAGCACAGAATCAACAAATTCATACGCAAATTTGAAGTCTCATGACTTTTATTTAGCCG
*
23177979 CAACCTTGACCACCAATGACTTAGGTATTCTTTTTTACGTTCATATGGTTCAAACGTTATTATCT
66 CAACCTTGACCACCAATGACTTAGGTATTCTTTTTTACGTTCATACGGTTCAAACGTTATTATCT
23178044 CGGTAGAATTTGAATTAAAACATGTAATGAATATGTATTTGAACATTAAGTATTTTACTTATAAG
131 CGGTAGAATTTGAATTAAAACATGTAATGAATATGTATTTGAACATTAAGTATTTTAC---TAAG
23178109 AATACGTATTTGGACAGTTTTTTTTTGTTTAATGGATTAGGAAAATGTAATGAAAATATAAAATA
193 AATACGTATTTGGACAGTTTTTTTTTGTTTAATGGATTAGGAAAATGTAATGAAAATATAAAATA
*
23178174 T-AAAAAAATAAGA
258 TAAAAAAAAAAAGA
23178187 AAAT
1 AAAT
23178191 GAATTAACGA
Statistics
Matches: 261, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
272 8 0.03
273 130 0.50
274 56 0.21
276 67 0.26
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (271 bp):
AAATTCAAGCACAGAATCAACAAATTCATACGCAAATTTGAAGTCTCATGACTTTTATTTAGCCG
CAACCTTGACCACCAATGACTTAGGTATTCTTTTTTACGTTCATACGGTTCAAACGTTATTATCT
CGGTAGAATTTGAATTAAAACATGTAATGAATATGTATTTGAACATTAAGTATTTTACTAAGAAT
ACGTATTTGGACAGTTTTTTTTTGTTTAATGGATTAGGAAAATGTAATGAAAATATAAAATATAA
AAAAAAAAAGA
Found at i:23180984 original size:28 final size:30
Alignment explanation
Indices: 23180953--23181009 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
23180943 TGAATTTAGT
* *
23180953 TATTATAC-TTT-AATTTGGTCAATTTTAA
1 TATTATACTTTTCAAATTAGTCAATTTTAA
23180981 TATTATACTTTTCAAATTAGTCAATTTTA
1 TATTATACTTTTCAAATTAGTCAATTTTA
23181010 GTCCTGTGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.32
29 3 0.12
30 14 0.56
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.53
Consensus pattern (30 bp):
TATTATACTTTTCAAATTAGTCAATTTTAA
Found at i:23188644 original size:13 final size:13
Alignment explanation
Indices: 23188626--23188650 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23188616 AAAAAAGATA
23188626 AAAATTAAAATAG
1 AAAATTAAAATAG
23188639 AAAATTAAAATA
1 AAAATTAAAATA
23188651 ACCTTATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAATTAAAATAG
Found at i:23194026 original size:19 final size:19
Alignment explanation
Indices: 23194002--23194059 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
23193992 AATCTTTAAC
23194002 TGAAAATGAATGACCAATT
1 TGAAAATGAATGACCAATT
23194021 TGAAAATGAATG-CCAAATT
1 TGAAAATGAATGACC-AATT
*
23194040 TGAAAATGAATGACAAATT
1 TGAAAATGAATGACCAATT
23194059 T
1 T
23194060 TTCTAAGCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
18 2 0.06
19 33 0.92
20 1 0.03
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.28
Consensus pattern (19 bp):
TGAAAATGAATGACCAATT
Found at i:23194717 original size:51 final size:51
Alignment explanation
Indices: 23194657--23194759 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
23194647 TGTTACCTTT
*
23194657 TATTTAGCATTGATAACATTCCCTTGGTATTGATATTGATGGCTCCAACAA
1 TATTTAGCATTGATAAAATTCCCTTGGTATTGATATTGATGGCTCCAACAA
23194708 TATTTAGCATTGATAAAATTCCCTTGGTATTGATATTGATGGCTCCAACAA
1 TATTTAGCATTGATAAAATTCCCTTGGTATTGATATTGATGGCTCCAACAA
23194759 T
1 T
23194760 CACTAAATTG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (51 bp):
TATTTAGCATTGATAAAATTCCCTTGGTATTGATATTGATGGCTCCAACAA
Found at i:23196284 original size:14 final size:14
Alignment explanation
Indices: 23196265--23196299 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
23196255 ATATGAATAC
23196265 AAAAATTATTTAAT
1 AAAAATTATTTAAT
*
23196279 AAAAA-TATTTATT
1 AAAAATTATTTAAT
23196292 AAAAATTA
1 AAAAATTA
23196300 ATATAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AAAAATTATTTAAT
Found at i:23201141 original size:3 final size:3
Alignment explanation
Indices: 23201133--23201164 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
23201123 TCCTTTCTCT
23201133 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
23201165 TTTTAAAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:23207122 original size:46 final size:46
Alignment explanation
Indices: 23207072--23207200 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
23207062 TGGTTGAGCA
*
23207072 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
23207118 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
23207164 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23207201 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 4 0.05
46 75 0.95
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:23215575 original size:31 final size:31
Alignment explanation
Indices: 23215539--23215600 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
23215529 ATGGGAGTAA
23215539 GGTGATAAATTAGAATATGAATTCATGTTGT
1 GGTGATAAATTAGAATATGAATTCATGTTGT
23215570 GGTGATAAATTAGAATATGAATTCATGTTGT
1 GGTGATAAATTAGAATATGAATTCATGTTGT
23215601 ATTTTAAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (31 bp):
GGTGATAAATTAGAATATGAATTCATGTTGT
Found at i:23215741 original size:24 final size:24
Alignment explanation
Indices: 23215720--23215769 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
23215710 CATATTAATT
23215720 TATGTATTTGTTAAATGATTAAGA
1 TATGTATTTGTTAAATGATTAAGA
23215744 TATGTATTTGTTAAATGATTAAGA
1 TATGTATTTGTTAAATGATTAAGA
23215768 TA
1 TA
23215770 AGCAATTCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (24 bp):
TATGTATTTGTTAAATGATTAAGA
Found at i:23219547 original size:24 final size:24
Alignment explanation
Indices: 23219520--23219590 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
23219510 TTGTTAGGAG
* *
23219520 AGGATTTATGAGTTGATAATGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
23219544 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
23219568 AGGATTTAGGAGTAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
23219591 GGAAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:23221068 original size:28 final size:27
Alignment explanation
Indices: 23221003--23221087 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
23220993 AGGAAGCATC
*
23221003 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
23221030 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
23221058 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
23221084 CTGG
1 CTGG
23221088 CATCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.09
27 32 0.60
28 16 0.30
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:23222169 original size:11 final size:10
Alignment explanation
Indices: 23222141--23222174 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
23222131 AGCCTGTAAG
23222141 TATTCTGAAT
1 TATTCTGAAT
*
23222151 TTTTCTGAAT
1 TATTCTGAAT
23222161 ATATTCTGAAT
1 -TATTCTGAAT
23222172 TAT
1 TAT
23222175 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:23227374 original size:24 final size:24
Alignment explanation
Indices: 23227342--23227410 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
23227332 CTGTCAGGAG
23227342 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
23227366 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
23227390 AGGATTTAGGAGCAGATAAGG
1 AGGATTTAGGAGTTGATAAGG
23227411 TAGGAAATCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.26
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:23227424 original size:48 final size:49
Alignment explanation
Indices: 23227342--23227435 Score: 113
Period size: 48 Copynumber: 1.9 Consensus size: 49
23227332 CTGTCAGGAG
** * *
23227342 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGATAGGATCTAGGAGCTGATCAAGGGAT
23227390 AGGATTTAGGAGCAGATAA-GG-TAGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGATAGG--ATCTAGGAGCTGATCAAGG
23227436 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 4 0.10
47 2 0.05
48 29 0.74
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.36, T:0.24
Consensus pattern (49 bp):
AGGATTTAGGAGCAGATAAGGGATAGGATCTAGGAGCTGATCAAGGGAT
Found at i:23228863 original size:27 final size:26
Alignment explanation
Indices: 23228833--23228940 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
23228823 AGCGTCCTGA
*
23228833 TGGCTATGCCACAATCATCTGATCTGG
1 TGGCTCTGCCACAAT-ATCTGATCTGG
* * *
23228860 TGGCTCTCCCACATATTTCTGTTCTGG
1 TGGCTCTGCCACA-ATATCTGATCTGG
*
23228887 TGGCTCTGCCACGATTATCTGTATCTGG
1 TGGCTCTGCCAC-AATATCTG-ATCTGG
* * * *
23228915 TGACTCTGTCACATTATCTGTTCTGG
1 TGGCTCTGCCACAATATCTGATCTGG
23228941 CATCCATGCT
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.07
27 44 0.66
28 18 0.27
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (26 bp):
TGGCTCTGCCACAATATCTGATCTGG
Found at i:23228935 original size:54 final size:54
Alignment explanation
Indices: 23228833--23228940 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
23228823 AGCGTCCTGA
* *
23228833 TGGCTATGCCACAATCATCTGATCTGGTGGCTCTCCCACATATTTCTGTTCTGG
1 TGGCTATGCCACAATCATCTGATCTGGTGACTCTCCCACATATATCTGTTCTGG
* * * **
23228887 TGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TGGCTATGCCACAATCATCTG-ATCTGGTGACTCTCCCACATATATCTGTTCTGG
23228941 CATCCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (54 bp):
TGGCTATGCCACAATCATCTGATCTGGTGACTCTCCCACATATATCTGTTCTGG
Found at i:23230069 original size:39 final size:39
Alignment explanation
Indices: 23230025--23230132 Score: 144
Period size: 39 Copynumber: 2.8 Consensus size: 39
23230015 TATGAGATTG
* *
23230025 AAAATATCTGGACATGAGATCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
* *
23230064 AAAATATCCGGACATGAAACCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
* * * *
23230103 AATATATCCGGACTTGAGGTCCGTAGGCTA
1 AAAATATCCGGACATGAGATCCGCAGGCTA
23230133 CGTGTTGGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
Found at i:23230226 original size:38 final size:38
Alignment explanation
Indices: 23230142--23230227 Score: 118
Period size: 38 Copynumber: 2.3 Consensus size: 38
23230132 ACGTGTTGGA
* * * *
23230142 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGT
1 ATTATATCTGGGTCAAATCCCGCAGGCCTAGTGCTAGT
* *
23230180 AATATATCTGGGTCAAATCCCGCAGGCCTAGTGCTGGT
1 ATTATATCTGGGTCAAATCCCGCAGGCCTAGTGCTAGT
23230218 ATTATATCTG
1 ATTATATCTG
23230228 AGTTTAAAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (38 bp):
ATTATATCTGGGTCAAATCCCGCAGGCCTAGTGCTAGT
Found at i:23234996 original size:27 final size:27
Alignment explanation
Indices: 23234949--23235106 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
23234939 CGAGGCTGCT
* *
23234949 AGATATTGTGAC-GAAGTCACCAGATAC
1 AGATATTGTGGCAG-AGCCACCAGATAC
23234976 AGATATTGTGGCAGAGCCACCAGA-AC
1 AGATATTGTGGCAGAGCCACCAGATAC
23235002 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATAT-TGTGGCAGAGCCACCAGATAC
* *
23235029 AGATAATCGTGGCATAGCCACCAGA-AC
1 AGAT-ATTGTGGCAGAGCCACCAGATAC
23235056 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATAT-TGTGGCAGAGCCACCAGATAC
* *
23235083 AGATAATTGGGGCATAGCCACCAG
1 AGAT-ATTGTGGCAGAGCCACCAG
23235107 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 8, Indels: 16
0.83 0.06 0.12
Matches are distributed among these distances:
26 10 0.09
27 100 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
AGATATTGTGGCAGAGCCACCAGATAC
Found at i:23235041 original size:54 final size:54
Alignment explanation
Indices: 23234966--23235106 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
23234956 GTGACGAAGT
*
23234966 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
23235020 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
23235074 CACCAGATCAGATAATTGGGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
23235107 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:23235239 original size:26 final size:27
Alignment explanation
Indices: 23235210--23235285 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
23235200 CAAAATTAAC
23235210 CCTAGGGGTATAACAGTAATTTTGC-A
1 CCTAGGGGTATAACAGTAATTTTGCAA
* *
23235236 CCTAGGGGTATAACAATAATTTTTCATA
1 CCTAGGGGTATAACAGTAATTTTGCA-A
* * *
23235264 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
23235286 AGTTGCTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
28 19 0.45
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTGCAA
Found at i:23236760 original size:26 final size:26
Alignment explanation
Indices: 23236729--23236836 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
23236719 TGAAATGCCC
*
23236729 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
23236755 ATCATGGAACATTTACCTTACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
23236781 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
23236807 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23236833 ATCA
1 ATCA
23236837 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:23244037 original size:292 final size:293
Alignment explanation
Indices: 23243463--23244211 Score: 1285
Period size: 292 Copynumber: 2.6 Consensus size: 293
23243453 TGATATAATC
23243463 TAAAAATAAAACAAGTGACCAAATTGAATTCTAGACAATTCTTCATCAAATTTCAGTCCAAAAAA
1 TAAAAATAAAACAAGTGACCAAATTGAATTCTAGACAATTCTTCATCAAATTTCAGTCCAAAAAA
* *
23243528 CGCCATAGGAGGACCTTGAAGCTGGTTTTTCATATTTTTACTTCAAGTGAATTCAATTCTTACTT
66 AGCCATAGGAGGACCTTGAAGCTGGTTTTTCATATTTTTACTTCAAGTGAATTCAATTCTTGCTT
23243593 TTTCCTTGAAATTTTTATGTTTTTGAGACTTTTAATTTAAAAATAAAAATGGTAAATTAGTGAAA
131 TTTCCTTGAAATTTTTATGTTTTTGAGACTTTTAATTTAAAAATAAAAATGGTAAATTAGTGAAA
23243658 GTAAAAATAAAACAAGTGACCAAATTGAAATTTAGACAAGTCTTCATCAAATTTAGGTATGATAT
196 GTAAAAATAAAACAAGTGACCAAATTGAAATTTAGACAAGTCTTCATCAAATTTAGGTATGATAT
23243723 AATTTAAAAATAAAAATGGTAAATTAGTGAAAT
261 AATTTAAAAATAAAAATGGTAAATTAGTGAAAT
* * * **
23243756 TAAAAATAAAACAAGTGACCAAATTGAATTTTAGAAAATTCTTCATCAATTTTTTTTGTCCAAAA
1 TAAAAATAAAACAAGTGACCAAATTGAATTCTAGACAATTCTTCATCAA--ATTTCAGTCCAAAA
* *
23243821 AAAGTCATAGAAGGACCTTGAAGCTGGTTTTTCATATTTTTACTTCAAGTGAATTCAATTCTTGC
64 AAAGCCATAGGAGGACCTTGAAGCTGGTTTTTCATATTTTTACTTCAAGTGAATTCAATTCTTGC
23243886 TTTTTCCTT-AAATTTTTATGTTTTTGAGACTTTTAATTTAAAAATAAAAATGGTAAATTAGTG-
129 TTTTTCCTTGAAATTTTTATGTTTTTGAGACTTTTAATTTAAAAATAAAAATGGTAAATTAGTGA
* *
23243949 AATTAAAAAT-AAACAAGTGACCAAATT-AAATTCTAGACAATTCTTCATCAAATTTAGGTATGA
194 AAGTAAAAATAAAACAAGTGACCAAATTGAAATT-TAGACAAGTCTTCATCAAATTTAGGTATGA
23244012 TATAATTTAAAAATAAAAATGGTAAATTAGTGAAAT
258 TATAATTTAAAAATAAAAATGGTAAATTAGTGAAAT
23244048 TAAAAATAAAACAAGTGACCAAATTGAATTCTAGACAATTCTTCATCAAATTTCAGTCCAAAAAA
1 TAAAAATAAAACAAGTGACCAAATTGAATTCTAGACAATTCTTCATCAAATTTCAGTCCAAAAAA
* *
23244113 CA-CCATAGGAGGACCTTCAAGCT-TTTTTTCATATTTTTACTTCAAGTGAATTCAATTCTTGCT
66 -AGCCATAGGAGGACCTTGAAGCTGGTTTTTCATATTTTTACTTCAAGTGAATTCAATTCTTGCT
*
23244176 TTTTCCTTGAAATTTTTTTTGTTTTTGAGACTTTTA
130 TTTTCCTTGAAA-TTTTTATGTTTTTGAGACTTTTA
23244212 CAATTAGGTC
Statistics
Matches: 429, Mismatches: 21, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
289 47 0.11
290 34 0.08
291 28 0.07
292 129 0.30
293 56 0.13
294 54 0.13
295 81 0.19
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (293 bp):
TAAAAATAAAACAAGTGACCAAATTGAATTCTAGACAATTCTTCATCAAATTTCAGTCCAAAAAA
AGCCATAGGAGGACCTTGAAGCTGGTTTTTCATATTTTTACTTCAAGTGAATTCAATTCTTGCTT
TTTCCTTGAAATTTTTATGTTTTTGAGACTTTTAATTTAAAAATAAAAATGGTAAATTAGTGAAA
GTAAAAATAAAACAAGTGACCAAATTGAAATTTAGACAAGTCTTCATCAAATTTAGGTATGATAT
AATTTAAAAATAAAAATGGTAAATTAGTGAAAT
Found at i:23244088 original size:97 final size:97
Alignment explanation
Indices: 23243625--23244100 Score: 385
Period size: 97 Copynumber: 4.9 Consensus size: 97
23243615 TTGAGACTTT
*
23243625 TAATTTAAAAATAAAAATGGTAAATTAGTGAAAGTAAAAATAAAACAAGTGACCAAATTGAAATT
1 TAATTTAAAAATAAAAATGGTAAATTAGTGAAATTAAAAATAAAACAAGTGACCAAATTG-AATT
*
23243690 -TAGACAAGTCTTCATCAAATTTAGGTATGATA
65 CTAGACAATTCTTCATCAAATTTAGGTATGATA
*
23243722 TAATTTAAAAATAAAAATGGTAAATTAGTGAAATTAAAAATAAAACAAGTGACCAAATTGAATTT
1 TAATTTAAAAATAAAAATGGTAAATTAGTGAAATTAAAAATAAAACAAGTGACCAAATTGAATTC
* ** * *
23243787 TAGAAAATTCTTCATC-AATTT-TTTTTG-TC
66 TAGACAATTCTTCATCAAATTTAGGTATGATA
* * ** *** *** ***
23243816 CAA---AAAAAGTCATAGAA-GG-ACCTTGAAGCTGGTTTTTCATATTTTTACTTCAAGTG----
1 TAATTTAAAAA-T-A-AAAATGGTAAATT--AG-T-GAAATT-A-A-AAATAAAACAAGTGACCA
* * * * * * * *
23243872 AATTCAATTCTTG-C--TTTTTCCTTAAATTTTTATGTTTTTGAGACTTT
56 AATTGAATTCTAGACAATTCTTCATCAAA--TTTA-G-GTAT--GA--TA
*
23243919 TAATTTAAAAATAAAAATGGTAAATTAGTG-AATTAAAAAT-AAACAAGTGACCAAATTAAATTC
1 TAATTTAAAAATAAAAATGGTAAATTAGTGAAATTAAAAATAAAACAAGTGACCAAATTGAATTC
23243982 TAGACAATTCTTCATCAAATTTAGGTATGATA
66 TAGACAATTCTTCATCAAATTTAGGTATGATA
23244014 TAATTTAAAAATAAAAATGGTAAATTAGTGAAATTAAAAATAAAACAAGTGACCAAATTGAATTC
1 TAATTTAAAAATAAAAATGGTAAATTAGTGAAATTAAAAATAAAACAAGTGACCAAATTGAATTC
23244079 TAGACAATTCTTCATCAAATTT
66 TAGACAATTCTTCATCAAATTT
23244101 CAGTCCAAAA
Statistics
Matches: 293, Mismatches: 50, Indels: 72
0.71 0.12 0.17
Matches are distributed among these distances:
91 5 0.02
92 10 0.03
93 5 0.02
94 8 0.03
95 48 0.16
96 28 0.10
97 121 0.41
98 6 0.02
99 11 0.04
100 15 0.05
101 6 0.02
102 1 0.00
103 17 0.06
104 3 0.01
105 4 0.01
106 5 0.02
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (97 bp):
TAATTTAAAAATAAAAATGGTAAATTAGTGAAATTAAAAATAAAACAAGTGACCAAATTGAATTC
TAGACAATTCTTCATCAAATTTAGGTATGATA
Found at i:23245083 original size:105 final size:101
Alignment explanation
Indices: 23244905--23245121 Score: 285
Period size: 105 Copynumber: 2.1 Consensus size: 101
23244895 AATTGATGGA
* * **
23244905 TAAGACCATGGTTGGACCATGGCAGTGTTTAAATGTAAGACCATAGCTGGGCTATGAAATTTTAA
1 TAAGACCATGGTTAGACCATGGCAGTATTTAAATGTAAGACCATAGCTGGGCTATGAAATTCAAA
*
23244970 TGAAAAGACCATAACTGGGTTATGACACCT-TGAACG
66 TGAAAAGACCATAACTGGGTTATGA-AACTATGAACG
* *
23245006 TAAGACCATGGTTAGACCATGGCAGTATATATACATGTGTAAGACCATAGTTGGGCTATGACAA-
1 TAAGACCATGGTTAGACCATGGCAGTAT-T-TA-A-ATGTAAGACCATAGCTGGGCTATGA-AAT
* *
23245070 TCAAATGATAAGACCATAACTGGGTTATGAAACTATGAATG
61 TCAAATGAAAAGACCATAACTGGGTTATGAAACTATGAACG
23245111 TAAGACCATGG
1 TAAGACCATGG
23245122 CAGGGCCATG
Statistics
Matches: 101, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
101 26 0.26
102 1 0.01
103 2 0.02
104 4 0.04
105 66 0.65
106 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (101 bp):
TAAGACCATGGTTAGACCATGGCAGTATTTAAATGTAAGACCATAGCTGGGCTATGAAATTCAAA
TGAAAAGACCATAACTGGGTTATGAAACTATGAACG
Found at i:23245165 original size:32 final size:33
Alignment explanation
Indices: 23245109--23245184 Score: 127
Period size: 32 Copynumber: 2.3 Consensus size: 33
23245099 AAACTATGAA
23245109 TGTAAGACCATGGCAGGGCCATGGCAATGCATG
1 TGTAAGACCATGGCAGGGCCATGGCAATGCATG
* *
23245142 TGTGAGACCATGGTA-GGCCATGGCAATGCATG
1 TGTAAGACCATGGCAGGGCCATGGCAATGCATG
23245174 TGTAAGACCAT
1 TGTAAGACCAT
23245185 CGTTGGACTA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
32 27 0.68
33 13 0.32
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.21
Consensus pattern (33 bp):
TGTAAGACCATGGCAGGGCCATGGCAATGCATG
Found at i:23247698 original size:18 final size:17
Alignment explanation
Indices: 23247675--23247723 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
23247665 GTTTTTTTAC
23247675 TAAATTATTTATTTAAT
1 TAAATTATTTATTTAAT
*
23247692 ATAAATTGATTT-TATAAT
1 -TAAATT-ATTTATTTAAT
*
23247710 TAAATTAATTATTT
1 TAAATTATTTATTT
23247724 GGATTGGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 3 0.12
17 8 0.31
18 11 0.42
19 4 0.15
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
TAAATTATTTATTTAAT
Found at i:23252216 original size:17 final size:17
Alignment explanation
Indices: 23252194--23252227 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
23252184 ATTTATAGAT
23252194 AAAATATAT-GATAATAA
1 AAAATA-ATGGATAATAA
23252211 AAAATAATGGATAATAA
1 AAAATAATGGATAATAA
23252228 TAGTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAATAATGGATAATAA
Found at i:23254243 original size:207 final size:207
Alignment explanation
Indices: 23253843--23254810 Score: 1600
Period size: 207 Copynumber: 4.7 Consensus size: 207
23253833 AAATCTGCTT
*
23253843 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
23253908 GTGAAAGCTAAATGAGCTATGAT-TTCGA-TTTGTTCCTTGTAAACACAAGGATGCCAAATCATC
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATC
* * * * * ** * **
23253971 TTGGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCTTTCGAATA
130 TTGGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATA
* *
23254036 TGAAGACGGCAAA
195 TGGAGACGCCAAA
*
23254049 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
23254114 GTGAAAGCCAAATCAGCTATGTCTACGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
*
23254179 TAGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
131 TGGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
*
23254244 GGAGGCGCCAAA
196 GGAGACGCCAAA
*
23254256 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
23254321 GTGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
23254386 TGGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
131 TGGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
23254451 GGAGACGCCAAA
196 GGAGACGCCAAA
*
23254463 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
23254528 GTGAAAGCCAAATTAGCTATGTCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
* ** *
23254593 TGGATCTGCTTCACTATAAACATATGAAGGCTGGATCTGCTATGTGTCTGCTCTCCGTTGAATAT
131 TGGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
*
23254658 GGAGATGCCAAA
196 GGAGACGCCAAA
*
23254670 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCCTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
23254735 GTGAAAGCCAAATCAGCTATGTCTTTGA-TTTGTTCCTTGAAAGCACAAGGATGCCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
23254799 TGGATCTTGCTT
131 TGGATC-TGCTT
23254811 TAGCCAGATC
Statistics
Matches: 718, Mismatches: 41, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
205 1 0.00
206 125 0.17
207 592 0.82
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCT
TGGATCTGCTTCAATATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:23256270 original size:33 final size:33
Alignment explanation
Indices: 23256228--23256294 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
23256218 GTTCGATAAG
23256228 CCAGGAGTGCAAACAGTAACTTCTCATGCCAAT
1 CCAGGAGTGCAAACAGTAACTTCTCATGCCAAT
*
23256261 CCAGGAGTGCAAACGGTAACTTCTCATGCCAAT
1 CCAGGAGTGCAAACAGTAACTTCTCATGCCAAT
23256294 C
1 C
23256295 TCTATAGGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (33 bp):
CCAGGAGTGCAAACAGTAACTTCTCATGCCAAT
Found at i:23262199 original size:64 final size:64
Alignment explanation
Indices: 23262126--23262336 Score: 158
Period size: 64 Copynumber: 3.2 Consensus size: 64
23262116 CTGGGCCAGA
* *
23262126 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
* * * *** * * * *
23262190 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCC-TATTTGGGTAACAAGGGTA
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC--CCCTTATTTAGATAAC-A--GTA
* *
23262253 CTGGGCCAGA-
55 -TGGCCCATAG
*
23262263 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
23262327 GCCCATTTCA
1 GCCCATTTCA
23262337 AAATACATGC
Statistics
Matches: 104, Mismatches: 28, Indels: 30
0.64 0.17 0.19
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 2 0.02
66 4 0.04
67 12 0.12
68 5 0.05
69 5 0.05
70 11 0.11
71 4 0.04
72 2 0.02
73 16 0.15
74 9 0.09
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
Found at i:23262338 original size:137 final size:137
Alignment explanation
Indices: 23262092--23262378 Score: 522
Period size: 137 Copynumber: 2.1 Consensus size: 137
23262082 TATTGGGCCT
**
23262092 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
23262157 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
23262222 CATATGC
131 CATATGC
*
23262229 AAGCCTATTTGGGTAACAAG-GGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCT
1 AAGCCCATTTGGGTAAC-AGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCT
*
23262293 TAGCCCCTTATTTAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
65 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
23262358 ACATATGC
130 ACATATGC
23262366 AAGCCCATTTGGG
1 AAGCCCATTTGGG
23262379 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
137 142 0.99
138 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Done.