Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 86 of 316
Found at i:26047197 original size:40 final size:39
Alignment explanation
Indices: 26047114--26047297 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
26047104 TCGAATGATG
* * *
26047114 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAT
*
26047152 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26047193 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAT
*
26047232 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* *
26047271 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
26047298 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 45 0.36
40 69 0.55
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26047319 original size:79 final size:79
Alignment explanation
Indices: 26047166--26047330 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
26047156 GGACTAAGAT
* * **
26047166 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCTCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
26047231 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26047245 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
26047308 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26047324 CCGAAGG
1 CCGAAGG
26047331 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26055329 original size:39 final size:40
Alignment explanation
Indices: 26055228--26055412 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
26055218 TCGAATGATG
* * *
26055228 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
26055267 ATCCAGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26055308 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* **
26055347 TCCGGGTTAAGTATCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26055386 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26055413 AATGAGTAGC
Statistics
Matches: 118, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 35 0.30
40 73 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26055434 original size:79 final size:79
Alignment explanation
Indices: 26055284--26055435 Score: 193
Period size: 79 Copynumber: 1.9 Consensus size: 79
26055274 CTAAGATCCA
* **
26055284 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
26055349 CGGGTTAAGTATCG
66 CGGGTTAAGTATCG
* * * *
26055363 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
26055426 ATCC-GGTTAA
63 ATCCGGGTTAA
26055436 ATTCCGAAGG
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.60
80 23 0.37
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAGTATCG
Found at i:26059668 original size:14 final size:14
Alignment explanation
Indices: 26059649--26059684 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26059639 ACTTGCACCG
*
26059649 CTTGCACATTACAA
1 CTTGCACATCACAA
*
26059663 CTTGCAAATCACAA
1 CTTGCACATCACAA
26059677 CTTGCACA
1 CTTGCACA
26059685 ATTAGGCAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.31, G:0.08, T:0.25
Consensus pattern (14 bp):
CTTGCACATCACAA
Found at i:26064101 original size:21 final size:21
Alignment explanation
Indices: 26064029--26064101 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
26064019 TACACGGTTA
* *
26064029 TGTGACTGAAAAACACGCCCG
1 TGTGACTGAGAAACACACCCG
* * * *
26064050 TGTAACTGAGATACATAGCCG
1 TGTGACTGAGAAACACACCCG
** *
26064071 TGTGGTTGAGAGACACACCCG
1 TGTGACTGAGAAACACACCCG
26064092 TGTGACTGAG
1 TGTGACTGAG
26064102 GTACACGACC
Statistics
Matches: 38, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.21
Consensus pattern (21 bp):
TGTGACTGAGAAACACACCCG
Found at i:26065989 original size:41 final size:40
Alignment explanation
Indices: 26065944--26066077 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 40
26065934 AACTTCGAGT
*
26065944 CGATGAGGCACTGGGTGTCACATTATTACTTCGAATTAATT
1 CGATGAGGCACTGGGTGTCACATTATTACTTCGAATT-ATC
* * ** *
26065985 CGATGAGGCACT-GGTG-C-CAAT-TTACTTTGGTTTAGC
1 CGATGAGGCACTGGGTGTCACATTATTACTTCGAATTATC
* * *
26066021 CGATGAGACACTGAGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGGCACTGGGTGTCACATTATTACTTCGAATTATC
*
26066061 CGATGAGGCACTAGGTG
1 CGATGAGGCACTGGGTG
26066078 CCAAACTAGT
Statistics
Matches: 72, Mismatches: 17, Indels: 9
0.73 0.17 0.09
Matches are distributed among these distances:
36 12 0.17
37 12 0.17
38 4 0.06
39 3 0.04
40 29 0.40
41 12 0.17
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (40 bp):
CGATGAGGCACTGGGTGTCACATTATTACTTCGAATTATC
Found at i:26070567 original size:19 final size:19
Alignment explanation
Indices: 26070543--26070580 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26070533 TGGGCCTCAA
26070543 TGGGCCGAAATGGGC-CGTG
1 TGGGCC-AAATGGGCTCGTG
*
26070562 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
26070581 GGCCCACACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.13, C:0.24, G:0.45, T:0.18
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:26070831 original size:27 final size:27
Alignment explanation
Indices: 26070796--26070984 Score: 288
Period size: 27 Copynumber: 7.0 Consensus size: 27
26070786 TCGTTATATA
* *
26070796 ACCGTAATGCCCCTGTAGAGTAAAATA
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* * *
26070823 ACCATAATGGCCCTGTAGAGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
26070850 ACCGTAATGCCCCTGTAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
*
26070877 ACTGTAATGCCCCTGTAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
26070904 ACCGTAATGCCCCTGTAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
*
26070931 ACTGTAATGCCCCTGTAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* * *
26070958 ACCATAATACCCCTGTATGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
26070985 TCAGTTATGC
Statistics
Matches: 149, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (27 bp):
ACCGTAATGCCCCTGTAGGGTAAAATG
Found at i:26071165 original size:27 final size:27
Alignment explanation
Indices: 26071126--26071207 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
26071116 GGAAGTTCTG
* * *
26071126 TACTGGTGACTATGTCACATTTACTGT
1 TACTGGTGGCTATGCCACATTTACTGA
* *
26071153 TACTGGAGGCTATGCCATATTTACTGA
1 TACTGGTGGCTATGCCACATTTACTGA
*
26071180 TACTGGTGGCT-TAGCCACATATA-TGA
1 TACTGGTGGCTAT-GCCACATTTACTGA
26071206 TA
1 TA
26071208 TTGATTTATC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTTACTGA
Found at i:26074355 original size:43 final size:43
Alignment explanation
Indices: 26074235--26074393 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
26074225 ATCTCGTACA
*
26074235 ATGCTAACGTCCCAGACGTGGTCTTACATGT-AATCAAACATCG
1 ATGC-AACGTCCCAGACGTGGTCTTACACGTAAATCAAACATCG
* ** *
26074278 ATGCCACTGTCCCAGACAAGGTCTTACACG-AAATCAAATAT-G
1 ATGCAAC-GTCCCAGACGTGGTCTTACACGTAAATCAAACATCG
* * *
26074320 ATGTCAACGTCCCAAACGTGGTCTTACACGTAAATCATAA-GTCA
1 ATG-CAACGTCCCAGACGTGGTCTTACACGTAAATCA-AACATCG
* *
26074364 ATGCCAACGTCCTAGACATGGTCTTACACG
1 ATG-CAACGTCCCAGACGTGGTCTTACACG
26074394 ATAACACATA
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 25 0.26
43 42 0.44
44 28 0.29
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCAACGTCCCAGACGTGGTCTTACACGTAAATCAAACATCG
Found at i:26084894 original size:42 final size:43
Alignment explanation
Indices: 26084794--26084906 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
26084784 ATCTCGTACA
* *
26084794 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAACATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAACATTG
*
26084837 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATA-TG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATCAAACATTG
*
26084879 ATGCCAACGTCCCAGACGTAGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
26084907 CAATAACACA
Statistics
Matches: 62, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
41 1 0.02
42 26 0.42
43 34 0.55
44 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAACATTG
Found at i:26088258 original size:13 final size:12
Alignment explanation
Indices: 26088239--26088274 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 12
26088229 ATTTAAGTAA
26088239 ATATATTATATT
1 ATATATTATATT
26088251 ATTATATTATATT
1 A-TATATTATATT
26088264 ATATTATTATA
1 ATA-TATTATA
26088275 ATTAAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 3 0.14
13 19 0.86
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATATATTATATT
Found at i:26088263 original size:18 final size:18
Alignment explanation
Indices: 26088240--26088274 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26088230 TTTAAGTAAA
26088240 TATATTATATTATTATAT
1 TATATTATATTATTATAT
26088258 TATATTATATTATTATA
1 TATATTATATTATTATA
26088275 ATTAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATTATATTATTATAT
Found at i:26093298 original size:29 final size:29
Alignment explanation
Indices: 26093249--26093350 Score: 150
Period size: 29 Copynumber: 3.4 Consensus size: 29
26093239 AGCTGAAGCT
* * *
26093249 ATCCCTTTTTCATAATTTGATGGTCATCACA
1 ATCCC-TTTTCAT-AGTTGATGGTCGTCACC
*
26093280 ATCCTTTTTCATAGTTGATGGTCGTCACC
1 ATCCCTTTTCATAGTTGATGGTCGTCACC
26093309 ATCCCTTTTCATAGTTGATGGTCGTCACC
1 ATCCCTTTTCATAGTTGATGGTCGTCACC
26093338 ATCCCTTTTCATA
1 ATCCCTTTTCATA
26093351 ATCGAGAACA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 55 0.83
30 7 0.11
31 4 0.06
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.41
Consensus pattern (29 bp):
ATCCCTTTTCATAGTTGATGGTCGTCACC
Found at i:26096416 original size:44 final size:44
Alignment explanation
Indices: 26096334--26096811 Score: 298
Period size: 44 Copynumber: 10.9 Consensus size: 44
26096324 CATGCTGATA
* * * * **
26096334 CTTCTATCTGCTCTCTGTCGAACACAAAGATGCCAAATCTA-CTAT
1 CTTCGATCTGCTCTCTGAC-AATACAGAGACACCAAATC-AGCTAT
* *
26096379 CTTCGATCTACTCTCTGACAATGCAGAGACACCAAATCTA-CTAT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATC-AGCTAT
* * *
26096423 CTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCATCTAT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
*
26096467 CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTAT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
*
26096511 GTTTCGATCTGCTCTCTGACAATACAGAGACACCAAAT---C-AT
1 -CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * *
26096552 CTTAGATTTGCT-TC-AACGTAAATAC-GTGATAGCCAAATCAGCTATAT
1 CTTCGATCTGCTCTCTGAC---AATACAGAGACA-CCAAATCAGC--TAT
* *
26096599 CTTCGATCTGCTCTCTGACGATACAGAGACGCCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
** * * * * *
26096639 CTTAAATTTGCT-TC-AACATAAACACGTGAAAGCCAAATCAGCTAATT
1 CTTCGATCTGCTCTCTGACA-ATACA-GAGACA-CCAAATCAGCT-A-T
* *
26096686 CTTCGATCTGCTCTTTGACAATATAGAGACACCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * *
26096726 CTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTATGT
1 CTTCGATCTGCTCTCTGAC--AATACA-GAGACA-CCAAATCAGCTA--T
*
26096773 CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCA
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCA
26096812 TCTTAGATTT
Statistics
Matches: 334, Mismatches: 60, Indels: 77
0.71 0.13 0.16
Matches are distributed among these distances:
38 6 0.02
39 11 0.03
40 44 0.13
41 26 0.08
42 1 0.00
43 3 0.01
44 103 0.31
45 52 0.16
46 25 0.07
47 45 0.13
48 11 0.03
49 7 0.02
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (44 bp):
CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
Found at i:26096624 original size:87 final size:87
Alignment explanation
Indices: 26096420--26097072 Score: 940
Period size: 87 Copynumber: 7.5 Consensus size: 87
26096410 CCAAATCTAC
* * * *
26096420 TATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCATCTATCTTCGATCTGCTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCC-AA--ATC-ATCTTAGATTTGCT-TC-AA
* *
26096485 C--AATACA-GAG-ACGCCAAATCAGCTA
60 CGTAA-ACACGTGAAAGCCAAATCAGCTA
* *
26096510 TGT-TTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
* *
26096574 TACGTGATAGCCAAATCAGCTA
66 CACGTGAAAGCCAAATCAGCTA
* * *
26096596 TATCTTCGATCTGCTCTCTGACGATACAGAGACGCCAAATCATCTTAAATTTGCTTCAACATAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
26096661 CACGTGAAAGCCAAATCAGCTA
66 CACGTGAAAGCCAAATCAGCTA
* * *
26096683 -ATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAA
1 TA-TCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAA
26096747 ACACGTGAAAGCCAAATCAGCTA
65 ACACGTGAAAGCCAAATCAGCTA
*
26096770 TGTCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
*
26096835 CACGTGAAAGCTAAATCAGCTA
66 CACGTGAAAGCCAAATCAGCTA
* *
26096857 TGTCTTCGATCTGCTATCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
26096922 CACGTGAAAGCCAAATCAGCTA
66 CACGTGAAAGCCAAATCAGCTA
* * *
26096944 TATCATCGATCTGCTCTTTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACATAAA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
26097009 CACGTGAAAGCCAAATCAGCTA
66 CACGTGAAAGCCAAATCAGCTA
* * * *
26097031 TATCTCCGATCTGCTCCCTGTCGAATACAGAGATGCCAAATC
1 TATCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATC
26097073 TGTTTCTCCA
Statistics
Matches: 514, Mismatches: 41, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
83 2 0.00
84 4 0.01
85 16 0.03
86 19 0.04
87 421 0.82
88 20 0.04
89 30 0.06
90 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (87 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAA
CACGTGAAAGCCAAATCAGCTA
Found at i:26107939 original size:17 final size:17
Alignment explanation
Indices: 26107902--26107956 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
26107892 TAAAATGTAT
**
26107902 AAATATAATATATAA-A
1 AAATATAATATGGAATA
* *
26107918 AAATATCATATGGAGTA
1 AAATATAATATGGAATA
*
26107935 AAATATAATATGTAATA
1 AAATATAATATGGAATA
26107952 AAATA
1 AAATA
26107957 ATATGAAAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 11 0.35
17 20 0.65
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (17 bp):
AAATATAATATGGAATA
Found at i:26107959 original size:15 final size:15
Alignment explanation
Indices: 26107874--26107975 Score: 59
Period size: 15 Copynumber: 6.7 Consensus size: 15
26107864 TATGATAAAC
*
26107874 AAAATAATATAT-AT
1 AAAATAATATGTAAT
* *
26107888 ATAATAAAATGT-AT
1 AAAATAATATGTAAT
*
26107902 AAATATAATATATAA-
1 AAA-ATAATATGTAAT
* *
26107917 AAAATATCATATGGAGT
1 AAAATA--ATATGTAAT
26107934 AAAATATAATATGTAAT
1 -AAA-ATAATATGTAAT
*
26107951 AAAATAATATG-AAA
1 AAAATAATATGTAAT
26107965 ACAAATAATAT
1 A-AAATAATAT
26107976 ATAAATATAG
Statistics
Matches: 68, Mismatches: 12, Indels: 15
0.72 0.13 0.16
Matches are distributed among these distances:
14 19 0.28
15 27 0.40
16 9 0.13
17 7 0.10
18 3 0.04
19 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (15 bp):
AAAATAATATGTAAT
Found at i:26109578 original size:9 final size:9
Alignment explanation
Indices: 26109564--26109589 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26109554 TTTTTACAGC
26109564 TTTGGGCCT
1 TTTGGGCCT
26109573 TTTGGGCCT
1 TTTGGGCCT
26109582 TTTGGGCC
1 TTTGGGCC
26109590 CCGTGTAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.23, G:0.35, T:0.42
Consensus pattern (9 bp):
TTTGGGCCT
Found at i:26116302 original size:88 final size:88
Alignment explanation
Indices: 26116137--26116303 Score: 230
Period size: 89 Copynumber: 1.9 Consensus size: 88
26116127 CCCCTCAAAC
** ** *
26116137 TTTTTTCAAAAAAGCAATTAAGTTCATTTTTTTTTTTTCACTCAATTAGGAACTTGAACTTTCAA
1 TTTTTTCAAAAAAGCAATTAAGCCCATGATTTTTTTTGCACTCAATTAGGAACTTGAACTTTCAA
*
26116202 AATGCATTAAAAAGACTCTCAAT
66 AATGCATCAAAAAGACTCTCAAT
* *
26116225 TTTTTTCAAAAAAAGCAATTAAGCCCATGATTTTTTTTGCACTCAATTAGGTATTTGAA-TTGT-
1 TTTTTTC-AAAAAAGCAATTAAGCCCATGATTTTTTTTGCACTCAATTAGGAACTTGAACTT-TC
26116288 AAAATGCATCAAAAAG
64 AAAATGCATCAAAAAG
26116304 GCTATTTAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
88 24 0.35
89 45 0.65
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (88 bp):
TTTTTTCAAAAAAGCAATTAAGCCCATGATTTTTTTTGCACTCAATTAGGAACTTGAACTTTCAA
AATGCATCAAAAAGACTCTCAAT
Found at i:26116538 original size:20 final size:20
Alignment explanation
Indices: 26116501--26116539 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26116491 TTGTAAAATT
*
26116501 TTATAAAAATCATTAAAAAA
1 TTATAAAAATCATCAAAAAA
26116521 TTAT-AAAATACATCAAAAA
1 TTATAAAAAT-CATCAAAAA
26116540 GACTCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (20 bp):
TTATAAAAATCATCAAAAAA
Found at i:26116554 original size:19 final size:19
Alignment explanation
Indices: 26116532--26116569 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26116522 TATAAAATAC
26116532 ATCAAAAAGACTCTTTAAT
1 ATCAAAAAGACTCTTTAAT
26116551 ATCAAAAAGACTCTTTAAT
1 ATCAAAAAGACTCTTTAAT
26116570 CATTAACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (19 bp):
ATCAAAAAGACTCTTTAAT
Found at i:26116877 original size:12 final size:10
Alignment explanation
Indices: 26116728--26116877 Score: 55
Period size: 10 Copynumber: 14.9 Consensus size: 10
26116718 TTTTAGTACG
26116728 ATAA-TTTTT
1 ATAATTTTTT
26116737 ATAATTTTTTT
1 ATAA-TTTTTT
26116748 ATGAA--TTTT
1 AT-AATTTTTT
26116757 AT-ATTTCTTT
1 ATAATTT-TTT
*
26116767 A-CATTTTTT
1 ATAATTTTTT
26116776 ATAATTTTCTT
1 ATAATTTT-TT
** * *
26116787 AGGACTTTAT
1 ATAATTTTTT
* *
26116797 AAAATTTTAT
1 ATAATTTTTT
26116807 A-AATTTTTT
1 ATAATTTTTT
* *
26116816 CT-ATATTTCT
1 ATAAT-TTTTT
*
26116826 AT-ATATTTT
1 ATAATTTTTT
26116835 ATAAATTTTCTT
1 AT-AATTTT-TT
* *
26116847 TTACTATTTTT
1 ATAAT-TTTTT
26116858 ATAATTTTTT
1 ATAATTTTTT
26116868 ATATATTTTT
1 ATA-ATTTTT
26116878 ATTAAAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 30
0.68 0.12 0.19
Matches are distributed among these distances:
7 1 0.01
9 29 0.27
10 37 0.35
11 31 0.29
12 8 0.08
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:26116887 original size:23 final size:22
Alignment explanation
Indices: 26116821--26116879 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 22
26116811 TTTTTCTATA
26116821 TTTC-TATATA-TTTTATAAAT
1 TTTCTTATATATTTTTATAAAT
*
26116841 TTTCTTTTACTATTTTTAT-AAT
1 TTTCTTATA-TATTTTTATAAAT
26116863 TTT-TTATATATTTTTAT
1 TTTCTTATATATTTTTAT
26116880 TAAAATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 13 0.38
21 7 0.21
22 8 0.24
23 6 0.18
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTCTTATATATTTTTATAAAT
Found at i:26116907 original size:19 final size:18
Alignment explanation
Indices: 26116845--26116918 Score: 58
Period size: 19 Copynumber: 3.8 Consensus size: 18
26116835 ATAAATTTTC
* *
26116845 TTTTACTATTTTTATAATT
1 TTTTAATATTTTTATAA-A
26116864 TTTTATATATTTTTATTAAA
1 TTTTA-ATATTTTTA-TAAA
* *
26116884 ATTTAATCATTTTTATAAC
1 TTTTAAT-ATTTTTATAAA
*
26116903 TTTTATTGATTTTTAT
1 TTTTAAT-ATTTTTAT
26116919 TTTTTATCAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 23 0.51
20 19 0.42
21 3 0.07
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTTTAATATTTTTATAAA
Found at i:26117537 original size:36 final size:36
Alignment explanation
Indices: 26117460--26117612 Score: 121
Period size: 36 Copynumber: 4.2 Consensus size: 36
26117450 ATAGAAATTT
* * *
26117460 GTAAATCAGAGAATTGTAAAAATGACCA-TTGCAATA
1 GTAAATTAGCGAACTGTAAAAATGA-CAGTTGCAATA
* * *
26117496 CTAAATTAGCGAACTGTAAAAATGACAGTCGCGATA
1 GTAAATTAGCGAACTGTAAAAATGACAGTTGCAATA
* * * *
26117532 ATAAATCAGTGAACTGCTAGAAAACCGA-AGGTTGCAATA
1 GTAAATTAGCGAACTG-TA-AAAA-TGACA-GTTGCAATA
* * * *
26117571 GTAAATTAGCGGACCGTAAAAATGAAAGTTGCGATA
1 GTAAATTAGCGAACTGTAAAAATGACAGTTGCAATA
26117607 GTAAAT
1 GTAAAT
26117613 CAATGAACTG
Statistics
Matches: 92, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
35 2 0.02
36 56 0.61
37 7 0.08
38 7 0.08
39 20 0.22
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (36 bp):
GTAAATTAGCGAACTGTAAAAATGACAGTTGCAATA
Found at i:26117638 original size:75 final size:75
Alignment explanation
Indices: 26117488--26117629 Score: 212
Period size: 75 Copynumber: 1.9 Consensus size: 75
26117478 AAAATGACCA
* * * *
26117488 TTGCAATACTAAATTAGCGAACTGTAAAAATGACAGTCGCGATAATAAATCAGTGAACTGCTAGA
1 TTGCAATACTAAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGA
26117553 AAACCGAAGG
66 AAACCGAAGG
* * * *
26117563 TTGCAATAGTAAATTAGCGGACCGTAAAAATGAAAGTTGCGATAGTAAATCAATGAACTGATAGA
1 TTGCAATACTAAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGA
26117628 AA
66 AA
26117630 CTTGAAGGTC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 59 1.00
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (75 bp):
TTGCAATACTAAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGA
AAACCGAAGG
Found at i:26117652 original size:75 final size:75
Alignment explanation
Indices: 26117498--26117653 Score: 188
Period size: 75 Copynumber: 2.1 Consensus size: 75
26117488 TTGCAATACT
* * * *
26117498 AAATTAGCGAACTGTAAAAATGACAGTCGCGATAATAAATCAGTGAACTGCTAGAAAACCGAAGG
1 AAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGAAAACCGAAGG
* *
26117563 TTGCAATAGT
66 TCGCAATAGA
* * * *
26117573 AAATTAGCGGACCGTAAAAATGAAAGTTGCGATAGTAAATCAATGAACTGATAG-AAACTTGAAG
1 AAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGAAAAC-CGAAG
* *
26117637 GTCGCGATCGA
65 GTCGCAATAGA
26117648 AAATTA
1 AAATTA
26117654 ATAGGTATAA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
74 4 0.06
75 64 0.94
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (75 bp):
AAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGAAAACCGAAGG
TCGCAATAGA
Found at i:26117747 original size:36 final size:35
Alignment explanation
Indices: 26117683--26118112 Score: 224
Period size: 36 Copynumber: 11.7 Consensus size: 35
26117673 AAAACCAAAG
* *
26117683 GTCGCGATGGTAAATCAGC-AGACCGTAAAAATAACA
1 GTCGCGATAGTAAATCAGCGA-ACTGTAAAAATAA-A
* *
26117719 GTCGTGATAGTAAATCAGCGAATTGT-AAAATGAAA
1 GTCGCGATAGTAAATCAGCGAACTGTAAAAAT-AAA
* * * * * *
26117754 GTCACAACAGTAAATTAGCGAACTTTAAAAATGGCAA
1 GTCGCGATAGTAAATCAGCGAACTGTAAAAAT--AAA
* * ** *
26117791 -TTGCAATAGTAAATCAATGAACTGTTAGAAAACTGAAG
1 GTCGCGATAGTAAATCAGCGAACTG-TA-AAAA-T-AAA
* *
26117829 GTCGCGATAGTAAATCAGC-AGACCGTAAAAATGACA
1 GTCGCGATAGTAAATCAGCGA-ACTGTAAAAAT-AAA
* * * *
26117865 GCCGCGATTGTAAATCAACGAATTGTAAAAATGAAA
1 GTCGCGATAGTAAATCAGCGAACTGTAAAAAT-AAA
* * *
26117901 GTCACGATAGTAAATTAGCGAACTATAAAAATGACAA
1 GTCGCGATAGTAAATCAGCGAACTGTAAAAAT-A-AA
* * * *
26117938 -TCGCAATAGGAAATCAACTAACTGTTAGAAAATCAAA
1 GTCGCGATAGTAAATCAGCGAACTG-TA-AAAAT-AAA
* * * * *
26117975 GGTCGCGATAGTAAATCAACGGATTGCAAAAATGACA
1 -GTCGCGATAGTAAATCAGCGAACTGTAAAAAT-AAA
*
26118012 GTCGCGATAGTAAATCAGCGAACTGTTAGAAAACTGAAG
1 GTCGCGATAGTAAATCAGCGAACTG-TA-AAAA-T-AAA
* * * * * *
26118051 GTCGTGATA-AAATATTAACGAATTGTAAAAATGATA
1 GTCGCGATAGTAA-ATCAGCGAACTGTAAAAAT-AAA
*
26118087 GTCGCGATAATAAATCAGCGAACTGT
1 GTCGCGATAGTAAATCAGCGAACTGT
26118113 TAGAAAATCG
Statistics
Matches: 299, Mismatches: 75, Indels: 40
0.72 0.18 0.10
Matches are distributed among these distances:
35 25 0.08
36 162 0.54
37 31 0.10
38 24 0.08
39 57 0.19
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.22
Consensus pattern (35 bp):
GTCGCGATAGTAAATCAGCGAACTGTAAAAATAAA
Found at i:26117861 original size:75 final size:73
Alignment explanation
Indices: 26117680--26118128 Score: 379
Period size: 75 Copynumber: 6.1 Consensus size: 73
26117670 TAGAAAACCA
* * * * * *
26117680 AAGGTCGCGATGGTAAATCAGCAGACCGTAAAAATAACAGTCGTGATAGTAAATCAGCGAATTG-
1 AAGGTCGCGATAGTAAATCAGC-GACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
26117744 T--AAAATG
65 TAGAAAATG
* * * * * * * * * * *
26117751 AAAGTCACAACAGTAAATTAGCGAACTTTAAAAATGGCAATTGCAATAGTAAATCAATGAACTGT
1 AAGGTCGCGATAGTAAATCAGCG-ACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
26117816 TAGAAAACTG
65 TAGAAAA-TG
* * * *
26117826 AAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGCCGCGATTGTAAATCAACGAATTG-
1 AAGGTCGCGATAGTAAATCAGC-GACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
26117890 TA-AAAATG
65 TAGAAAATG
* * * * * * * *
26117898 AAAGTCACGATAGTAAATTAGCGAACTATAAAAATGACAATCGCAATAGGAAATCAACTAACTGT
1 AAGGTCGCGATAGTAAATCAGCG-ACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
*
26117963 TAGAAAATCA
65 TAGAAAAT-G
* * * *
26117973 AAGGTCGCGATAGTAAATCAACGGATTGCAAAAATGACAGTCGCGATAGTAAATCAGCGAACTGT
1 AAGGTCGCGATAGTAAATCAGC-GACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
26118038 TAGAAAACTG
65 TAGAAAA-TG
* * * * * * * *
26118048 AAGGTCGTGATA-AAATATTAACGAATTGTAAAAATGATAGTCGCGATAATAAATCAGCGAACTG
1 AAGGTCGCGATAGTAA-ATCAGCG-ACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTG
26118112 TTAGAAAATCG
64 TTAGAAAAT-G
26118123 AAGGTC
1 AAGGTC
26118129 ATCATCGAAA
Statistics
Matches: 299, Mismatches: 64, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
70 1 0.00
71 46 0.15
72 53 0.18
73 6 0.02
74 15 0.05
75 175 0.59
76 3 0.01
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (73 bp):
AAGGTCGCGATAGTAAATCAGCGACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGTT
AGAAAATG
Found at i:26117969 original size:147 final size:146
Alignment explanation
Indices: 26117667--26118033 Score: 522
Period size: 147 Copynumber: 2.5 Consensus size: 146
26117657 GGTATAAAAT
* * * *
26117667 TGTTAGAAAACCAAAGGTCGCGATGGTAAATCAGCAGACCGTAAAAATAACAGTCGTGATAGTAA
1 TGTTAGAAAACTAAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGTCGCGATAGTAA
* * *
26117732 ATCAGCGAATTGTAAAATGAAAGTCACAACAGTAAATTAGCGAACTTTAAAAATGGCAATTGCAA
66 ATCAGCGAATTGTAAAATGAAAGTCACAACAGTAAATTAGCGAACTATAAAAATGACAATCGCAA
*
26117797 TAGTAAATCAATGAAC
131 TAGGAAATCAATGAAC
* * *
26117813 TGTTAGAAAACTGAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGCCGCGATTGTAA
1 TGTTAGAAAACTAAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGTCGCGATAGTAA
* * *
26117878 ATCAACGAATTGTAAAAATGAAAGTCACGATAGTAAATTAGCGAACTATAAAAATGACAATCGCA
66 ATCAGCGAATTGT-AAAATGAAAGTCACAACAGTAAATTAGCGAACTATAAAAATGACAATCGCA
26117943 ATAGGAAATCAACT-AAC
130 ATAGGAAATCAA-TGAAC
* * ** *
26117960 TGTTAGAAAA-TCAAAGGTCGCGATAGTAAATCAACGGATTGCAAAAATGACAGTCGCGATAGTA
1 TGTTAGAAAACT-AAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGTCGCGATAGTA
26118024 AATCAGCGAA
65 AATCAGCGAA
26118034 CTGTTAGAAA
Statistics
Matches: 195, Mismatches: 23, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
146 71 0.36
147 123 0.63
148 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.21
Consensus pattern (146 bp):
TGTTAGAAAACTAAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGTCGCGATAGTAA
ATCAGCGAATTGTAAAATGAAAGTCACAACAGTAAATTAGCGAACTATAAAAATGACAATCGCAA
TAGGAAATCAATGAAC
Found at i:26118091 original size:111 final size:110
Alignment explanation
Indices: 26117796--26118108 Score: 303
Period size: 111 Copynumber: 2.8 Consensus size: 110
26117786 GGCAATTGCA
** * * *
26117796 ATAGTAAATCAATGAACTGTTAGAAAACTGAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAAT
1 ATAGTAAATCAGCGAACTGTTAGAAAACTGAAGGTCGCGATAGAAAATCAACA-ACTGTAAAAAT
* * * *
26117861 GACAGCCGCGATTGTAAATCAACGAATTGTAAAAATGAAAGTCACG
65 GAAAGTCGCGATAGTAAATCAACGAATTGCAAAAATGAAAGTCACG
* * * * *
26117907 ATAGTAAATTAGCGAACT-ATA-AAAA-TGACA-ATCGCAATAGGAAATCAACTAACTGTTAGAA
1 ATAGTAAATCAGCGAACTGTTAGAAAACTGA-AGGTCGCGATAGAAAATCAAC-AACTG-TA-AA
* * * *
26117968 AATCAAAGGTCGCGATAGTAAATCAACGGATTGCAAAAATGACAGTCGCG
62 AATGAAA-GTCGCGATAGTAAATCAACGAATTGCAAAAATGAAAGTCACG
* * *
26118018 ATAGTAAATCAGCGAACTGTTAGAAAACTGAAGGTCGTGATA-AAATATTAACGAATTGTAAAAA
1 ATAGTAAATCAGCGAACTGTTAGAAAACTGAAGGTCGCGATAGAAA-ATCAAC-AACTGTAAAAA
* * *
26118082 TGATAGTCGCGATAATAAATCAGCGAA
64 TGAAAGTCGCGATAGTAAATCAACGAA
26118109 CTGTTAGAAA
Statistics
Matches: 161, Mismatches: 31, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
108 21 0.13
109 8 0.05
110 9 0.06
111 87 0.54
112 9 0.06
113 9 0.06
114 18 0.11
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (110 bp):
ATAGTAAATCAGCGAACTGTTAGAAAACTGAAGGTCGCGATAGAAAATCAACAACTGTAAAAATG
AAAGTCGCGATAGTAAATCAACGAATTGCAAAAATGAAAGTCACG
Found at i:26118155 original size:75 final size:73
Alignment explanation
Indices: 26117765--26118187 Score: 246
Period size: 75 Copynumber: 5.7 Consensus size: 73
26117755 TCACAACAGT
* * * * * **
26117765 AAATTAGCGAACTTTAAAAATGGCAATTGCAATAGTAAATCAATGAACTGTTAGAAAA-CTGAAG
1 AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATC-GAAG
* *
26117829 GTCGCGATAGT
65 GTCTC-AT-GA
* * ** * * * * * *
26117840 AAATCAGC-AGACCGTAAAAATGACAGCCGCGATTGTAAATCAACGAATTG-TA-AAAAT-GAAA
1 AAATTAACGA-ACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATCGAAG
* *
26117901 GTCACGATAGT
65 GTCTC-AT-GA
* * * * * *
26117912 AAATTAGCGAACTATAAAAATGACAATCGCAATAGGAAATCAACTAACTGTTAGAAAATCAAAGG
1 AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATCGAAGG
* *
26117977 TCGCGATAGT
66 TCTC-AT-GA
* * * ** *
26117987 AAATCAACGGATTGCAAAAATGACAGTCGCGATAGTAAATCAGCGAACTGTTAGAAAA-CTGAAG
1 AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATC-GAAG
* *
26118051 GTCGTGATAA
65 GTC-TCATGA
* * * * *
26118061 AATATTAACGAATTGTAAAAATGATAGTCGCGATAATAAATCAGCGAACTGTTAGAAAATCGAAG
1 AA-ATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATCGAAG
26118126 GTCATCATCGA
65 GTC-TCAT-GA
* * * * * * *
26118137 AAATTAGCGGACTATAAAAATAATAGTTGCAATATTAAATCAGCAAACTGT
1 AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGT
26118188 AAAATTGACA
Statistics
Matches: 278, Mismatches: 59, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
72 51 0.18
73 7 0.03
74 11 0.04
75 205 0.74
76 4 0.01
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (73 bp):
AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATCGAAGG
TCTCATGA
Found at i:26118156 original size:150 final size:148
Alignment explanation
Indices: 26117667--26118220 Score: 433
Period size: 147 Copynumber: 3.8 Consensus size: 148
26117657 GGTATAAAAT
* * * * * ** * *
26117667 TGTTAGAAAACCAAAGGTCGCGATGGTAAATCAGCAGACCGTAAAAATAACAGTCGTGATAGTAA
1 TGTTAGAAAATCAAAGGTCGCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTAA
* * * * * * * *
26117732 ATCAGCGAATTG-T-AAAATGAAAGTCACAACAGTAAATTAGCGAACTTTAAAAATGGCAATTGC
66 ATCAGCGAACTGTTAAAAATGAAAGTCACGATAGAAAATTAACGAACTATAAAAATGACAATCGC
*
26117795 AAT-AGTAAATCAATGAAC
131 AATAAG-AAATCAACGAAC
* * * * ** * *
26117813 TGTTAGAAAA-CTGAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGCCGCGATTGTA
1 TGTTAGAAAATC-AAAGGTCGCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTA
* * * *
26117877 AATCAACGAATTG-TAAAAATGAAAGTCACGATAGTAAATTAGCGAACTATAAAAATGACAATCG
65 AATCAGCGAACTGTTAAAAATGAAAGTCACGATAGAAAATTAACGAACTATAAAAATGACAATCG
* *
26117941 CAATAGGAAATCAACTAAC
130 CAATAAGAAATCAACGAAC
* * **
26117960 TGTTAGAAAATCAAAGGTCGCGATAGTAAATCAACGGATTGCAAAAATGACAGTCGCGATAGTAA
1 TGTTAGAAAATCAAAGGTCGCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTAA
* ** * * * *
26118025 ATCAGCGAACTGTTAGAAAACTGAAGGTCGTGATA-AAATATTAACGAATTGTAAAAATGATAGT
66 ATCAGCGAACTGTTA-AAAA-TGAAAGTCACGATAGAAA-ATTAACGAACTATAAAAATGACAAT
* * *
26118089 CGCGATAATAAATCAGCGAAC
128 CGCAATAAGAAATCAACGAAC
* * * * * * * * * *
26118110 TGTTAGAAAATCGAAGGTCATC-ATCGAAAATTAGCGGACTATAAAAATAATAGTTGCAATATTA
1 TGTTAGAAAATCAAAGGTC-GCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTA
* * * * *
26118174 AATCAGCAAACTG-TAAAATTGACAGTCGCAATA-ATAAATTAACGAAC
65 AATCAGCGAACTGTTAAAAATGAAAGTCACGATAGA-AAATTAACGAAC
26118221 GATTAGAAAA
Statistics
Matches: 338, Mismatches: 60, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
145 1 0.00
146 69 0.20
147 143 0.42
148 9 0.03
149 8 0.02
150 107 0.32
151 1 0.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.22
Consensus pattern (148 bp):
TGTTAGAAAATCAAAGGTCGCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTAA
ATCAGCGAACTGTTAAAAATGAAAGTCACGATAGAAAATTAACGAACTATAAAAATGACAATCGC
AATAAGAAATCAACGAAC
Found at i:26118292 original size:36 final size:35
Alignment explanation
Indices: 26118252--26118444 Score: 120
Period size: 36 Copynumber: 5.2 Consensus size: 35
26118242 GTGGCGATAA
26118252 TAAATCAACGAACCATAAAAATGACAGTCGCAATAG
1 TAAATCAAC-AACCATAAAAATGACAGTCGCAATAG
* * *
26118288 TAAATCAACGAACTGTTAGAAAAATGA-AGGTCGCGATAG
1 TAAATCAAC-AAC---CATAAAAATGACA-GTCGCAATAG
* * * **
26118327 TAAATTAGCAGACCGTAAAAATGACAGTCATAATAG
1 TAAATCAACA-ACCATAAAAATGACAGTCGCAATAG
* ** * *
26118363 TAAATTAACAAACTGTTAGAAAACTGA-AGGTCGCGATAC
1 TAAATCAAC-AAC-CATA-AAAA-TGACA-GTCGCAATAG
* *
26118402 TAAATCAGCAGACCATAAAAATGACAATCGCAATAG
1 TAAATCAACA-ACCATAAAAATGACAGTCGCAATAG
26118438 TAAATCA
1 TAAATCA
26118445 GCAAACTGTT
Statistics
Matches: 119, Mismatches: 25, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
36 55 0.46
37 9 0.08
38 10 0.08
39 45 0.38
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (35 bp):
TAAATCAACAACCATAAAAATGACAGTCGCAATAG
Found at i:26118437 original size:150 final size:153
Alignment explanation
Indices: 26118172--26118460 Score: 381
Period size: 150 Copynumber: 1.9 Consensus size: 153
26118162 GTTGCAATAT
* * * *
26118172 TAAATCAGCAAACTGTAAAATTGACAGTCGCAATAATAAATTAACGAACGATTAGAAAATCGAAT
1 TAAATCAGCAAACCGTAAAAATGACAGTCACAATAATAAATTAACAAACGATTAGAAAATC--AT
* * *
26118237 GTAAGGTGGCGATAATAAATCAACGAACCATAAAAATGACAGTCGCAATAGTAAATCAACGAACT
64 GTAAGGTCGCGATAATAAATCAACGAACCATAAAAATGACAATCGCAATAGTAAATCAACAAACT
26118302 GTTAGAAAAATGAAGGTCGCGATAG
129 GTTAGAAAAATGAAGGTCGCGATAG
* * * *
26118327 TAAATTAGCAGACCGTAAAAATGACAGTCATAATAGTAAATTAACAAACTG-TTAGAAAA-C-TG
1 TAAATCAGCAAACCGTAAAAATGACAGTCACAATAATAAATTAACAAAC-GATTAGAAAATCATG
* * *
26118389 -AAGGTCGCGATACTAAATCAGC-AGACCATAAAAATGACAATCGCAATAGTAAATCAGCAAACT
65 TAAGGTCGCGATAATAAATCAACGA-ACCATAAAAATGACAATCGCAATAGTAAATCAACAAACT
26118452 GTTAGAAAA
129 GTTAGAAAA
26118461 CCGAAGGTAA
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
149 1 0.01
150 64 0.54
151 2 0.02
154 1 0.01
155 49 0.42
156 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.21
Consensus pattern (153 bp):
TAAATCAGCAAACCGTAAAAATGACAGTCACAATAATAAATTAACAAACGATTAGAAAATCATGT
AAGGTCGCGATAATAAATCAACGAACCATAAAAATGACAATCGCAATAGTAAATCAACAAACTGT
TAGAAAAATGAAGGTCGCGATAG
Found at i:26118461 original size:75 final size:75
Alignment explanation
Indices: 26118172--26118468 Score: 328
Period size: 75 Copynumber: 3.9 Consensus size: 75
26118162 GTTGCAATAT
* ** * * * *
26118172 TAAATCAGCAAACTGTAAAATTGACAGTCGCAATAATAAATTAACGAAC-GATTAGAAAATCGAA
1 TAAATCAGCAGACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTG-TTAGAAAA-C---
*
26118236 TGTAAGGTGGCGATAA
61 TG-AAGGTCGCGATAA
* * *
26118252 TAAATCAAC-GAACCATAAAAATGACAGTCGCAATAGTAAATCAACGAACTGTTAGAAAAATGAA
1 TAAATCAGCAG-ACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTGTTAGAAAACTGAA
*
26118316 GGTCGCGATAG
65 GGTCGCGATAA
* * ** *
26118327 TAAATTAGCAGACCGTAAAAATGACAGTCATAATAGTAAATTAACAAACTGTTAGAAAACTGAAG
1 TAAATCAGCAGACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTGTTAGAAAACTGAAG
*
26118392 GTCGCGATAC
66 GTCGCGATAA
* * *
26118402 TAAATCAGCAGACCATAAAAATGACAATCGCAATAGTAAATCAGCAAACTGTTAGAAAACCGAAG
1 TAAATCAGCAGACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTGTTAGAAAACTGAAG
26118467 GT
66 GT
26118469 AATGTCGCTG
Statistics
Matches: 187, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
75 134 0.72
76 3 0.02
80 49 0.26
81 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (75 bp):
TAAATCAGCAGACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTGTTAGAAAACTGAAG
GTCGCGATAA
Found at i:26119317 original size:25 final size:26
Alignment explanation
Indices: 26119263--26119317 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
26119253 AAATATTAAA
*
26119263 ATTAATTTAATATTAAGAGAATCACT
1 ATTAATTTAATATTAAGAAAATCACT
*
26119289 -TTAATATTAA-ATTAATAAAAT-ACT
1 ATTAAT-TTAATATTAAGAAAATCACT
26119313 ATTAA
1 ATTAA
26119318 GATAAGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 3 0.12
25 18 0.72
26 4 0.16
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (26 bp):
ATTAATTTAATATTAAGAAAATCACT
Found at i:26119340 original size:68 final size:71
Alignment explanation
Indices: 26119210--26119346 Score: 199
Period size: 68 Copynumber: 2.0 Consensus size: 71
26119200 AATTAAACTT
* * *
26119210 AATCATTTTAATATTAAATTAATAGAATATTTATTTACAAGATAAATATTAAAATTAATTTAATA
1 AATCACTTTAATATTAAATTAATAAAATATCTATTTA-AAGATAAATATTAAAATTAATTTAATA
26119275 TTAAGAG
65 TTAAGAG
* *
26119282 AATCACTTTAATATTAAATTAATAAAATA-CTA-TT-AAGATAAGTATTAAATTTAATTTAATAT
1 AATCACTTTAATATTAAATTAATAAAATATCTATTTAAAGATAAATATTAAAATTAATTTAATAT
26119344 TAA
66 TAA
26119347 ATCTATTAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
68 29 0.48
70 2 0.03
71 2 0.03
72 27 0.45
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (71 bp):
AATCACTTTAATATTAAATTAATAAAATATCTATTTAAAGATAAATATTAAAATTAATTTAATAT
TAAGAG
Found at i:26119362 original size:68 final size:71
Alignment explanation
Indices: 26119218--26119365 Score: 160
Period size: 68 Copynumber: 2.1 Consensus size: 71
26119208 TTAATCATTT
* * *
26119218 TAATATTAAATTAATAGAATATTTATTTACAAGATAAATATTAAAATTAATTTAATATTAAGAGA
1 TAATATTAAATTAATAAAATATCTATTTA-AAGATAAATATTAAAATTAATTTAATATTAAGACA
***
26119283 ATCACTT
65 ATCAAAA
* * *
26119290 TAATATTAAATTAATAAAATA-CTA-TT-AAGATAAGTATTAAATTTAATTTAATATTAA-ATCT
1 TAATATTAAATTAATAAAATATCTATTTAAAGATAAATATTAAAATTAATTTAATATTAAGA-CA
*
26119351 ATTAAAA
65 ATCAAAA
26119358 TAATATTA
1 TAATATTA
26119366 TTTTTGGCAG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
67 1 0.02
68 40 0.62
70 2 0.03
71 2 0.03
72 20 0.31
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.41
Consensus pattern (71 bp):
TAATATTAAATTAATAAAATATCTATTTAAAGATAAATATTAAAATTAATTTAATATTAAGACAA
TCAAAA
Found at i:26123415 original size:14 final size:14
Alignment explanation
Indices: 26123396--26123426 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
26123386 ACAGAAACTC
26123396 AATTATAACCGTTT
1 AATTATAACCGTTT
26123410 AATTATAACCGTTT
1 AATTATAACCGTTT
26123424 AAT
1 AAT
26123427 CATTAAGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (14 bp):
AATTATAACCGTTT
Found at i:26126666 original size:102 final size:102
Alignment explanation
Indices: 26126490--26126694 Score: 322
Period size: 102 Copynumber: 2.0 Consensus size: 102
26126480 GTCTCTTTAT
* *
26126490 TTTTCTTGAAAATGTCCTTTTTTCGACATTCCACCCAAATCCAAGTAACATAAATGCCAACGATC
1 TTTTCTTGAAAATATCCTTTTTTCGACATTCCACCCAAATCCAAGTAACAAAAATGCCAACGATC
* *
26126555 AGAGCACTTTTGGCCATCAAATTGAGCAATAACAGCA
66 AGAGAACTTTTGGCCATCAAATTAAGCAATAACAGCA
* *
26126592 TTTTCTTGAAAATATCCTCTTTTT-GGCATTCCACCCAAATCCAAGTAACAAAAATGCCAAGGAT
1 TTTTCTTGAAAATATCCT-TTTTTCGACATTCCACCCAAATCCAAGTAACAAAAATGCCAACGAT
* *
26126656 CAGATAACTTTTGGCCCTCAAATTAAGCAATAACAGCA
65 CAGAGAACTTTTGGCCATCAAATTAAGCAATAACAGCA
26126694 T
1 T
26126695 CAAGTAACCA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
102 89 0.95
103 5 0.05
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (102 bp):
TTTTCTTGAAAATATCCTTTTTTCGACATTCCACCCAAATCCAAGTAACAAAAATGCCAACGATC
AGAGAACTTTTGGCCATCAAATTAAGCAATAACAGCA
Found at i:26129669 original size:27 final size:27
Alignment explanation
Indices: 26129638--26129804 Score: 198
Period size: 27 Copynumber: 6.1 Consensus size: 27
26129628 AGCATGGCTG
* *
26129638 CCAGATACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
26129665 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
26129693 CCAGA-ACAGATATATGTGGCAAAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
26129720 CCAGAT-CAGATAATCGTGGCATAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
26129747 CCA-AAACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
26129774 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
26129801 CCAG
1 CCAG
26129805 GACGCTTCCT
Statistics
Matches: 122, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
26 4 0.03
27 99 0.81
28 19 0.16
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:26129734 original size:54 final size:54
Alignment explanation
Indices: 26129638--26129804 Score: 246
Period size: 54 Copynumber: 3.1 Consensus size: 54
26129628 AGCATGGCTG
* * * *
26129638 CCAGATACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCATAGCCA
*
26129693 CCAGAACAGATATATGTGGCAAAGCCACCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
* *
26129747 CCAAAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
26129801 CCAG
1 CCAG
26129805 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
54 80 0.78
55 22 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
Found at i:26131409 original size:26 final size:26
Alignment explanation
Indices: 26131380--26131487 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
26131370 TAAAATGCTC
*
26131380 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
26131406 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
26131432 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
26131458 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
26131484 ATCA
1 ATCA
26131488 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:26132308 original size:16 final size:17
Alignment explanation
Indices: 26132279--26132327 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
26132269 TGTATTTAAA
* *
26132279 TTAAAAATATATAAATT
1 TTAAAAATAAATAAAAT
26132296 TTAAAAA-AAATAAAAT
1 TTAAAAATAAATAAAAT
* *
26132312 TTATAAATTAATAAAA
1 TTAAAAATAAATAAAA
26132328 AGTATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAATAAATAAAAT
Found at i:26132902 original size:27 final size:27
Alignment explanation
Indices: 26132852--26132930 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
26132842 GGCCTTACAT
*
26132852 ATTTTTATAA-GTTTATAAATATT-TAG
1 ATTTTTATAATTTTTATAAAT-TTATAG
*
26132878 TTATTTTATATATTTTTATAAATTTATAG
1 AT-TTTTATA-ATTTTTATAAATTTATAG
*
26132907 ATTTTTATAATTTTTGTAAATTTA
1 ATTTTTATAATTTTTATAAATTTA
26132931 CATATTATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
26 1 0.02
27 21 0.47
28 10 0.22
29 13 0.29
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (27 bp):
ATTTTTATAATTTTTATAAATTTATAG
Found at i:26132905 original size:18 final size:18
Alignment explanation
Indices: 26132850--26132916 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
26132840 AAGGCCTTAC
*
26132850 ATATTTTTATAAGTTTAT
1 ATATTTTTATAAATTTAT
* * * *
26132868 AAATATTTAGTTATTTTAT
1 ATATTTTTA-TAAATTTAT
26132887 ATATTTTTATAAATTTAT
1 ATATTTTTATAAATTTAT
*
26132905 AGATTTTTATAA
1 ATATTTTTATAA
26132917 TTTTTGTAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 25 0.64
19 14 0.36
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.58
Consensus pattern (18 bp):
ATATTTTTATAAATTTAT
Found at i:26145175 original size:18 final size:18
Alignment explanation
Indices: 26145152--26145189 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
26145142 AATATATATT
26145152 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
26145170 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
26145188 AA
1 AA
26145190 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:26145182 original size:13 final size:13
Alignment explanation
Indices: 26145166--26145190 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26145156 CAAGTACCCA
26145166 ACCCAACCCAATT
1 ACCCAACCCAATT
26145179 ACCCAACCCAAT
1 ACCCAACCCAAT
26145191 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:26145228 original size:5 final size:6
Alignment explanation
Indices: 26145215--26145249 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
26145205 ATAATTTAAT
26145215 AAATAA AAATAA AAATATA AAACTAA AAATAA AAA
1 AAATAA AAATAA AAATA-A AAA-TAA AAATAA AAA
26145250 ATATAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 17 0.63
7 8 0.30
8 2 0.07
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:26145236 original size:14 final size:14
Alignment explanation
Indices: 26145217--26145252 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
26145207 AATTTAATAA
26145217 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
*
26145231 ATAAAACTAAAAAT
1 ATAAAAATAAAAAT
26145245 A-AAAAATA
1 ATAAAAATA
26145253 TAATTTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (14 bp):
ATAAAAATAAAAAT
Found at i:26145350 original size:9 final size:9
Alignment explanation
Indices: 26145267--26145351 Score: 91
Period size: 9 Copynumber: 9.4 Consensus size: 9
26145257 TTTATACAAA
*
26145267 TAATTCGAT
1 TAATTCGGT
26145276 TAATTCGGT
1 TAATTCGGT
26145285 TAATTCGGT
1 TAATTCGGT
* *
26145294 TAATTTGGG
1 TAATTCGGT
*
26145303 TAATTCGGG
1 TAATTCGGT
26145312 TAATTCGAG-
1 TAATTCG-GT
*
26145321 TAATTCAGT
1 TAATTCGGT
*
26145330 TAATTCGAT
1 TAATTCGGT
*
26145339 TAATTCAGT
1 TAATTCGGT
26145348 TAAT
1 TAAT
26145352 ATTATACTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
8 1 0.02
9 63 0.97
10 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:26149589 original size:20 final size:20
Alignment explanation
Indices: 26149564--26149603 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26149554 AATTTCAAAA
26149564 TTATAAAAT-TTTAGAATTTT
1 TTAT-AAATGTTTAGAATTTT
*
26149584 TTATAAATGTTTTGAATTTT
1 TTATAAATGTTTAGAATTTT
26149604 AAAATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
TTATAAATGTTTAGAATTTT
Found at i:26149601 original size:28 final size:27
Alignment explanation
Indices: 26149570--26149626 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
26149560 AAAATTATAA
* *
26149570 AATTTTAGAATTT-TTTATAAATGTTTTG
1 AATTTTAAAATTTATTT-TAAA-ATTTTG
26149598 AATTTTAAAATTTATTTTAAAATTTTG
1 AATTTTAAAATTTATTTTAAAATTTTG
26149625 AA
1 AA
26149627 AATTATTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 7 0.27
28 16 0.62
29 3 0.12
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (27 bp):
AATTTTAAAATTTATTTTAAAATTTTG
Found at i:26149621 original size:20 final size:20
Alignment explanation
Indices: 26149598--26149635 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26149588 AAATGTTTTG
26149598 AATTTT-AAAATTTATTTTAA
1 AATTTTGAAAA-TTATTTTAA
26149618 AATTTTGAAAATTATTTT
1 AATTTTGAAAATTATTTT
26149636 GTACTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTGAAAATTATTTTAA
Found at i:26157140 original size:35 final size:35
Alignment explanation
Indices: 26157074--26157340 Score: 327
Period size: 35 Copynumber: 7.6 Consensus size: 35
26157064 TCCTCATTGA
* * * *
26157074 AATACTATACCTACATTTCACAACTCGGTATGGAA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* ** *
26157109 AATGCCATACCTACGTTTCTTAACTTAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
26157144 AATACCATACCTACATTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
26157179 TATTCCATACCTACGTTTCACAACTCGGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
26157214 GATACCATACCTACGTTTCACAACTCGGTATAGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
26157249 GATACCATACCTACATTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * * *
26157284 AATATCATACCTATGTTTCACAACTTAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
26157319 AATACCATACCTACGTTTCACA
1 AATACCATACCTACGTTTCACA
26157341 TTTTGCCATG
Statistics
Matches: 199, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 199 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.33
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:26157262 original size:105 final size:105
Alignment explanation
Indices: 26157080--26157340 Score: 371
Period size: 105 Copynumber: 2.5 Consensus size: 105
26157070 TTGAAATACT
* * * ** * *
26157080 ATACCTACATTTCACAACTCGGTATGGAAAATGCCATACCTACGTTTCTTAACTTAGTATGGATA
1 ATACCTACGTTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCAGTATAGATA
*
26157145 ATACCATACCTACATTTCACAACTCAGTATGGTTTAT-TCC
66 ATACCATACCTACATTTCACAACTCAGTATGGTTAATAT-C
* * *
26157185 ATACCTACGTTTCACAACTCGGTATGGATGATACCATACCTACGTTTCACAACTCGGTATAGATG
1 ATACCTACGTTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCAGTATAGATA
26157250 ATACCATACCTACATTTCACAACTCAGTATGGTTAATATC
66 ATACCATACCTACATTTCACAACTCAGTATGGTTAATATC
* ** *
26157290 ATACCTATGTTTCACAACTTAGTATGGTTAATACCATACCTACGTTTCACA
1 ATACCTACGTTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACA
26157341 TTTTGCCATG
Statistics
Matches: 139, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
105 138 0.99
106 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (105 bp):
ATACCTACGTTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCAGTATAGATA
ATACCATACCTACATTTCACAACTCAGTATGGTTAATATC
Found at i:26162003 original size:40 final size:39
Alignment explanation
Indices: 26161903--26162008 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 39
26161893 GAAATCCTTG
* *
26161903 TTATAATTATTGTAATTGTAA-TTTATGATCGAATATTA
1 TTATAATTATTGTAATTGTAATTTTATGATCAAACATTA
* *
26161941 TTATAATTATTGTAACTGTAATTTTGTCGATCAAACATTA
1 TTATAATTATTGTAATTGTAATTTTAT-GATCAAACATTA
*
26161981 TTATAATTA-TGTTAATTATAATTATTAT
1 TTATAATTATTG-TAATTGTAATT-TTAT
26162009 ATTTGGTTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
38 20 0.35
39 6 0.11
40 28 0.49
41 3 0.05
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (39 bp):
TTATAATTATTGTAATTGTAATTTTATGATCAAACATTA
Found at i:26165260 original size:18 final size:18
Alignment explanation
Indices: 26165237--26165295 Score: 61
Period size: 16 Copynumber: 3.4 Consensus size: 18
26165227 AGTTAATGAC
26165237 TTGAAATGGCAAATGATA
1 TTGAAATGGCAAATGATA
* *
26165255 TTGAAAT--AAAATGCTA
1 TTGAAATGGCAAATGATA
* *
26165271 TTGAAATAGCAAATGTTA
1 TTGAAATGGCAAATGATA
26165289 -TGAAATG
1 TTGAAATG
26165296 AAATGAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
16 14 0.41
17 6 0.18
18 14 0.41
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.31
Consensus pattern (18 bp):
TTGAAATGGCAAATGATA
Found at i:26165272 original size:16 final size:16
Alignment explanation
Indices: 26165247--26165301 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
26165237 TTGAAATGGC
26165247 AAATGATATTGAAATA
1 AAATGATATTGAAATA
*
26165263 AAATGCTATTGAAATA
1 AAATGATATTGAAATA
* *
26165279 GCAAATGTTA-TGAAATG
1 --AAATGATATTGAAATA
26165296 AAATGA
1 AAATGA
26165302 AATTTAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 5 0.15
16 15 0.45
17 6 0.18
18 7 0.21
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.29
Consensus pattern (16 bp):
AAATGATATTGAAATA
Found at i:26165275 original size:34 final size:33
Alignment explanation
Indices: 26165237--26165300 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
26165227 AGTTAATGAC
*
26165237 TTGAAATGGCAAATGATATTGAAATAAAATGCTA
1 TTGAAATAGCAAATGATA-TGAAATAAAATGCTA
* *
26165271 TTGAAATAGCAAATGTTATGAAATGAAATG
1 TTGAAATAGCAAATGATATGAAATAAAATG
26165301 AAATTTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 11 0.41
34 16 0.59
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.30
Consensus pattern (33 bp):
TTGAAATAGCAAATGATATGAAATAAAATGCTA
Found at i:26165883 original size:23 final size:22
Alignment explanation
Indices: 26165857--26165900 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26165847 AATTAGTTAT
26165857 ATGTTAGGCATTAT-GTTTGATGG
1 ATGTTAGG-ATT-TGGTTTGATGG
*
26165880 ATGTTTGGATTTGGTTTGATG
1 ATGTTAGGATTTGGTTTGATG
26165901 CATAATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 11 0.58
23 7 0.37
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (22 bp):
ATGTTAGGATTTGGTTTGATGG
Found at i:26166212 original size:33 final size:33
Alignment explanation
Indices: 26166170--26166233 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
26166160 AATAGGTTGA
26166170 AATGTAGTCTAAATGGAAACTTGGGACTTAAGC
1 AATGTAGTCTAAATGGAAACTTGGGACTTAAGC
*
26166203 AATGTAGTCTAAATGGAAGCTTGGGACTTAA
1 AATGTAGTCTAAATGGAAACTTGGGACTTAA
26166234 TCATTCCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (33 bp):
AATGTAGTCTAAATGGAAACTTGGGACTTAAGC
Found at i:26166887 original size:20 final size:19
Alignment explanation
Indices: 26166862--26166906 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
26166852 AGGGGTGTGC
26166862 AAAATTCGGGTAAAACCGAA
1 AAAATTC-GGTAAAACCGAA
*
26166882 AAAATTCGGTTAAACCGAA
1 AAAATTCGGTAAAACCGAA
26166901 AAAATT
1 AAAATT
26166907 AATAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (19 bp):
AAAATTCGGTAAAACCGAA
Found at i:26169572 original size:28 final size:28
Alignment explanation
Indices: 26169532--26169588 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
26169522 TTGAACGTGT
26169532 TAGGGGGGCTGTTAGATATGTGAGACAA
1 TAGGGGGGCTGTTAGATATGTGAGACAA
26169560 TAGGGGGGCTGTTAGATATGTGAGACAA
1 TAGGGGGGCTGTTAGATATGTGAGACAA
26169588 T
1 T
26169589 CTCTAGCTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.39, T:0.26
Consensus pattern (28 bp):
TAGGGGGGCTGTTAGATATGTGAGACAA
Found at i:26171024 original size:17 final size:17
Alignment explanation
Indices: 26171004--26171061 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
26170994 ATTTCAAGAC
26171004 TTATGTAATATTTTTAA
1 TTATGTAATATTTTTAA
* * *
26171021 TTATGTAGTGATTCATAAA
1 TTATGTAAT-ATT-TTTAA
26171040 CTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
26171058 TTAT
1 TTAT
26171062 TCATAGACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
17 12 0.38
18 6 0.19
19 6 0.19
20 8 0.25
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.53
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:26171043 original size:37 final size:37
Alignment explanation
Indices: 26171002--26171167 Score: 177
Period size: 37 Copynumber: 4.9 Consensus size: 37
26170992 TAATTTCAAG
26171002 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
1 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
*
26171039 ACTTATGTAATATTTTT-A--A--T--T-ATTCATAG
1 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
*
26171068 ACTTATGTAATATTTTT-A--A--T--T-ATTCATAG
1 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
26171097 ACTTATGTAATATTTTTAATTATGTAGTGATTCA-AA
1 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
*
26171133 GACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 -ACTTATGTAATATTTTTAATTATGTAGTGATTCA
26171168 ATTCGGTTAA
Statistics
Matches: 117, Mismatches: 3, Indels: 18
0.85 0.02 0.13
Matches are distributed among these distances:
29 53 0.45
30 2 0.02
32 2 0.02
34 2 0.02
36 3 0.03
37 55 0.47
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (37 bp):
ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
Found at i:26171064 original size:29 final size:29
Alignment explanation
Indices: 26171031--26171119 Score: 169
Period size: 29 Copynumber: 3.1 Consensus size: 29
26171021 TTATGTAGTG
*
26171031 ATTCATAAACTTATGTAATATTTTTAATT
1 ATTCATAGACTTATGTAATATTTTTAATT
26171060 ATTCATAGACTTATGTAATATTTTTAATT
1 ATTCATAGACTTATGTAATATTTTTAATT
26171089 ATTCATAGACTTATGTAATATTTTTAATT
1 ATTCATAGACTTATGTAATATTTTTAATT
26171118 AT
1 AT
26171120 GTAGTGATTC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.52
Consensus pattern (29 bp):
ATTCATAGACTTATGTAATATTTTTAATT
Found at i:26171121 original size:17 final size:17
Alignment explanation
Indices: 26171099--26171159 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
26171089 ATTCATAGAC
26171099 TTATGTAATATTTTTAA
1 TTATGTAATATTTTTAA
* ***
26171116 TTATGTAGTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
*
26171135 CTTATGTAATGTTTTTAA
1 -TTATGTAATATTTTTAA
26171153 TTATGTA
1 TTATGTA
26171160 GTGATTCAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 15 0.47
18 5 0.16
19 4 0.12
20 8 0.25
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:26171181 original size:9 final size:9
Alignment explanation
Indices: 26171167--26171249 Score: 89
Period size: 9 Copynumber: 9.4 Consensus size: 9
26171157 GTAGTGATTC
26171167 AATTCGGTT
1 AATTCGGTT
*
26171176 AATTCGGGT
1 AATTCGGTT
*
26171185 AA-TCGATT
1 AATTCGGTT
* *
26171193 AATTTGGGT
1 AATTCGGTT
*
26171202 AA-TCAGTT
1 AATTCGGTT
*
26171210 AATTCGATT
1 AATTCGGTT
26171219 AATTCGGTT
1 AATTCGGTT
*
26171228 AATTCGTTT
1 AATTCGGTT
26171237 AATTCGGTT
1 AATTCGGTT
26171246 AATT
1 AATT
26171250 TTTAACCAAA
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
8 11 0.19
9 47 0.81
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:26171196 original size:17 final size:17
Alignment explanation
Indices: 26171173--26171215 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
26171163 ATTCAATTCG
26171173 GTTAATTCGGGTAATC-
1 GTTAATTCGGGTAATCA
*
26171189 GATTAATTTGGGTAATCA
1 G-TTAATTCGGGTAATCA
26171207 GTTAATTCG
1 GTTAATTCG
26171216 ATTAATTCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (17 bp):
GTTAATTCGGGTAATCA
Found at i:26171204 original size:26 final size:27
Alignment explanation
Indices: 26171162--26171249 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 27
26171152 ATTATGTAGT
*
26171162 GATTCAATTCGGTTAATTCGGGTAA-TC
1 GATT-AATTCGGGTAATTCGGGTAATTC
* * *
26171189 GATTAATTTGGGTAA-TCAGTTAATTC
1 GATTAATTCGGGTAATTCGGGTAATTC
* **
26171215 GATTAATTCGGTTAATTCGTTTAATTC
1 GATTAATTCGGGTAATTCGGGTAATTC
*
26171242 GGTTAATT
1 GATTAATT
26171250 TTTAACCAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
25 6 0.12
26 24 0.48
27 20 0.40
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.43
Consensus pattern (27 bp):
GATTAATTCGGGTAATTCGGGTAATTC
Found at i:26180581 original size:9 final size:9
Alignment explanation
Indices: 26180567--26180592 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26180557 GGGGAGGCAA
26180567 GAAGAAAGG
1 GAAGAAAGG
26180576 GAAGAAAGG
1 GAAGAAAGG
26180585 GAAGAAAG
1 GAAGAAAG
26180593 TTAGTCCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (9 bp):
GAAGAAAGG
Found at i:26182046 original size:15 final size:16
Alignment explanation
Indices: 26182020--26182052 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
26182010 AAATTCTTTG
*
26182020 TTTAATTTTTTTTGAA
1 TTTAATTTTTTTTAAA
26182036 TTTAA-TTTTTTTAAA
1 TTTAATTTTTTTTAAA
26182051 TT
1 TT
26182053 AGAAAAATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTAATTTTTTTTAAA
Found at i:26182508 original size:30 final size:30
Alignment explanation
Indices: 26182474--26182535 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
26182464 CTGAGACGTA
26182474 TACTTTTCATCTTCCATGCGGAGAGTGTAC
1 TACTTTTCATCTTCCATGCGGAGAGTGTAC
26182504 TACTTTTCATCTTCCATGCGGAGAGTGTAC
1 TACTTTTCATCTTCCATGCGGAGAGTGTAC
26182534 TA
1 TA
26182536 TCACTCTGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (30 bp):
TACTTTTCATCTTCCATGCGGAGAGTGTAC
Found at i:26184456 original size:18 final size:18
Alignment explanation
Indices: 26184433--26184469 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
26184423 AAATGAATGA
*
26184433 ATTAGGAGCAAATTGAAT
1 ATTAGGACCAAATTGAAT
26184451 ATTAGGACCAAATTGAAT
1 ATTAGGACCAAATTGAAT
26184469 A
1 A
26184470 GGTGAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.27
Consensus pattern (18 bp):
ATTAGGACCAAATTGAAT
Found at i:26186405 original size:33 final size:32
Alignment explanation
Indices: 26186368--26186479 Score: 113
Period size: 33 Copynumber: 3.4 Consensus size: 32
26186358 ACCTAAAAGA
*
26186368 TACAACTGGAAAAGAAAATGTACACTGTGTGTG
1 TACAACTGGAAAAGGAAATGTACACT-TGTGTG
** *
26186401 TACAACTTAAAAAGGAAACGTACACTTTGTGTG
1 TACAACTGGAAAAGGAAATGTACAC-TTGTGTG
*
26186434 TAC-ACTTGAAAAGGAAATGTATGC-CTTGTGTG
1 TACAACTGGAAAAGGAAATGTA--CACTTGTGTG
26186466 TACAA-TGTGAAAAG
1 TACAACTG-GAAAAG
26186480 TGGTAGCTTC
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
32 27 0.40
33 38 0.57
34 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.27
Consensus pattern (32 bp):
TACAACTGGAAAAGGAAATGTACACTTGTGTG
Found at i:26186463 original size:32 final size:32
Alignment explanation
Indices: 26186376--26186479 Score: 102
Period size: 32 Copynumber: 3.2 Consensus size: 32
26186366 GATACAACTG
* *
26186376 GAAAAGAAAATGTACA-CTGTGTGTGTACAACTT
1 GAAAAGGAAACGTACACCT-TGTGTGTAC-ACTT
* *
26186409 AAAAAGGAAACGTACACTTTGTGTGTACACTT
1 GAAAAGGAAACGTACACCTTGTGTGTACACTT
* ** *
26186441 GAAAAGGAAATGTATGCCTTGTGTGTACAATGT
1 GAAAAGGAAACGTACACCTTGTGTGTACACT-T
26186474 GAAAAG
1 GAAAAG
26186480 TGGTAGCTTC
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
32 29 0.49
33 29 0.49
34 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (32 bp):
GAAAAGGAAACGTACACCTTGTGTGTACACTT
Found at i:26186509 original size:31 final size:31
Alignment explanation
Indices: 26186472--26186614 Score: 173
Period size: 31 Copynumber: 4.5 Consensus size: 31
26186462 TGTGTACAAT
26186472 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
26186503 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
26186534 GTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
26186565 GTGAATAA-TGGTAGCTTCGACTACAAGTGA-CAA
1 GTGAA-AAGTGGTAGCTTCGGCTAC--CTGATC-A
*
26186598 GTGATAAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
26186615 TAGCTACAAT
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
31 74 0.77
32 5 0.05
33 17 0.18
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:26186709 original size:27 final size:27
Alignment explanation
Indices: 26186678--26186742 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
26186668 TAGTTGAACT
*
26186678 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
26186705 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
26186732 ATAGCAAAGTG
1 ATGGCAAAGTG
26186743 TTCAGTGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:26186835 original size:34 final size:34
Alignment explanation
Indices: 26186797--26186870 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
26186787 CATGGCAAAG
*
26186797 TGTGAAACGTAGGTATGGTATTTCTATACTGAGC
1 TGTGAAACGTAGGTATGGTATTTCCATACTGAGC
* *
26186831 TGTGAAACGTAGGTATGGTGTTTCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCCATACTGAGC
26186865 TGTGAA
1 TGTGAA
26186871 TCGTGGCACT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (34 bp):
TGTGAAACGTAGGTATGGTATTTCCATACTGAGC
Found at i:26187439 original size:20 final size:20
Alignment explanation
Indices: 26187416--26187455 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26187406 CAAGTGCTCA
26187416 AATGAAAATATACTTGTGAT
1 AATGAAAATATACTTGTGAT
26187436 AATGAAAATATACTTGTGAT
1 AATGAAAATATACTTGTGAT
26187456 CGTGAGAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGAAAATATACTTGTGAT
Found at i:26191788 original size:50 final size:49
Alignment explanation
Indices: 26191713--26191886 Score: 260
Period size: 50 Copynumber: 3.5 Consensus size: 49
26191703 ACAATACGAC
* *
26191713 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTAGGTCGCAT
* * * *
26191763 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTTAGGTCGCAT
26191813 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTAGGTCGCAT
26191862 GTGTAGTACTAAGTGCAGGCTACTA
1 GTGTAGTACTAAGTGCAGGCTACTA
26191887 TGCGTATCAA
Statistics
Matches: 112, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
49 32 0.29
50 79 0.71
51 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTTAGGTCGCAT
Found at i:26191894 original size:99 final size:100
Alignment explanation
Indices: 26191713--26191895 Score: 314
Period size: 99 Copynumber: 1.8 Consensus size: 100
26191703 ACAATACGAC
*
26191713 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACTAAGTG
*
26191778 CAGGCTACTACGTGTATCAGATGGTGAGGTCACGT
66 CAGGCTACTACGCGTATCAGATGGTGAGGTCACGT
* *
26191813 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACTAAGTG
*
26191877 CAGGCTACTATGCGTATCA
66 CAGGCTACTACGCGTATCA
26191896 AATAGCTTCG
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
99 39 0.50
100 39 0.50
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (100 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACTAAGTG
CAGGCTACTACGCGTATCAGATGGTGAGGTCACGT
Found at i:26194039 original size:126 final size:126
Alignment explanation
Indices: 26193814--26194198 Score: 619
Period size: 126 Copynumber: 3.0 Consensus size: 126
26193804 TTATAGCCTC
*
26193814 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * *
26193879 ACAGTGTATCCTGGTTGAAGTGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
*
26193940 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
26194005 ATAGTGCATCTTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
26194066 ATTTTTCTACGAATTACTGTAGCAAAAGAGCATCCACGTGGGAGTTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * **
26194131 ACAGTGCATCCTGCTTGAAGCCTTTTCCGACACTATTT-TTCTAGAAACGTCTGGTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAG-CACTATTTGTTC-AGAAACGTCTACTCAGAATT
26194193 ATTTTT
1 ATTTTT
26194199 GTAGAAACCC
Statistics
Matches: 240, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
126 208 0.87
127 32 0.13
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:26194680 original size:15 final size:15
Alignment explanation
Indices: 26194660--26194713 Score: 60
Period size: 15 Copynumber: 3.8 Consensus size: 15
26194650 TCTAAAACCT
26194660 TAAAACCCTAAATCC
1 TAAAACCCTAAATCC
26194675 TAAAACCCTAAA-CC
1 TAAAACCCTAAATCC
* * *
26194689 T--TACCATAAATTC
1 TAAAACCCTAAATCC
26194702 TAAAACCCTAAA
1 TAAAACCCTAAA
26194714 CCCTTACAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
12 7 0.23
13 2 0.06
14 3 0.10
15 19 0.61
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAAACCCTAAATCC
Found at i:26194704 original size:27 final size:28
Alignment explanation
Indices: 26194668--26194720 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
26194658 CTTAAAACCC
26194668 TAAATCCTAAAACCCTAAA-CCTTACCA
1 TAAATCCTAAAACCCTAAACCCTTACCA
*
26194695 TAAATTCTAAAACCCTAAACCCTTAC
1 TAAATCCTAAAACCCTAAACCCTTAC
26194721 AAAACCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.25
Consensus pattern (28 bp):
TAAATCCTAAAACCCTAAACCCTTACCA
Found at i:26194751 original size:45 final size:42
Alignment explanation
Indices: 26194654--26194762 Score: 107
Period size: 45 Copynumber: 2.5 Consensus size: 42
26194644 TATTTTTCTA
*
26194654 AAACCTTAAAACCCTAAATCC-TAAAACCCTAAACCTTACCAT
1 AAACC-TAAAACCCTAAACCCTTAAAACCCTAAACCTTACCAT
* *
26194696 AAATTCTAAAACCCTAAACCCTTACAAAACCCT-AACCTTAACCTT
1 AAA-CCTAAAACCCTAAACCCTT--AAAACCCTAAACCTT-ACCAT
26194741 AAACCATAAAAACCCT-AACCCT
1 AAACC-T-AAAACCCTAAACCCT
26194763 AAATAAATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
42 17 0.30
43 2 0.04
44 7 0.12
45 22 0.39
46 8 0.14
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (42 bp):
AAACCTAAAACCCTAAACCCTTAAAACCCTAAACCTTACCAT
Found at i:26209531 original size:19 final size:19
Alignment explanation
Indices: 26209507--26209545 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26209497 AAAAAACTTC
26209507 TTTTTGCAATAGTCCAAAA
1 TTTTTGCAATAGTCCAAAA
*
26209526 TTTTTGCAATAGTGCAAAA
1 TTTTTGCAATAGTCCAAAA
26209545 T
1 T
26209546 CACACCATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (19 bp):
TTTTTGCAATAGTCCAAAA
Found at i:26211469 original size:27 final size:27
Alignment explanation
Indices: 26211439--26211495 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
26211429 ACAAGGGCAT
* *
26211439 TTCCTTCATA-TTTTACCATGCATACCA
1 TTCCTTCAGAGTTTT-CCATGAATACCA
*
26211466 TTCCTTCAGAGTTTTTCATGAATACCA
1 TTCCTTCAGAGTTTTCCATGAATACCA
26211493 TTC
1 TTC
26211496 TTTTAGACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.25, C:0.26, G:0.07, T:0.42
Consensus pattern (27 bp):
TTCCTTCAGAGTTTTCCATGAATACCA
Found at i:26211598 original size:27 final size:26
Alignment explanation
Indices: 26211564--26211653 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 26
26211554 TTGTTTTTTT
26211564 GCCACAAAGGCTTTCACTTCATGGTTC
1 GCCACAAAGGCTTTC-CTTCATGGTTC
* * *
26211591 ACCACAAAGACTTTCTTTTCATGG-TC
1 GCCACAAAGGCTTTC-CTTCATGGTTC
*
26211617 TGCCACAAAGGCTTTCCTTTTATGGTTC
1 -GCCACAAAGGCTTTCC-TTCATGGTTC
26211645 GCCACAAAG
1 GCCACAAAG
26211654 ATTTTTTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.04
27 48 0.92
28 2 0.04
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (26 bp):
GCCACAAAGGCTTTCCTTCATGGTTC
Found at i:26213949 original size:6 final size:6
Alignment explanation
Indices: 26213933--26213966 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
26213923 TAGGTTTCCA
* *
26213933 AAAATG GAAATG AAAATG AAAATG AAAACG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
26213967 CTTGCAATCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.03, G:0.18, T:0.12
Consensus pattern (6 bp):
AAAATG
Found at i:26214139 original size:25 final size:25
Alignment explanation
Indices: 26214105--26214176 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 25
26214095 ATGAATTTTC
26214105 TCAAAATTTTACTAGGG-TAAAATAG
1 TCAAAATTTTA-TAGGGTTAAAATAG
* *
26214130 TCAAAATTTTATCGGGTTAAAATCG
1 TCAAAATTTTATAGGGTTAAAATAG
*
26214155 TCAAAATTTTATCGGGGTTAAA
1 TCAAAATTTTAT-AGGGTTAAA
26214177 CCATCAAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
24 4 0.10
25 30 0.71
26 8 0.19
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (25 bp):
TCAAAATTTTATAGGGTTAAAATAG
Found at i:26214183 original size:25 final size:25
Alignment explanation
Indices: 26214105--26214190 Score: 79
Period size: 25 Copynumber: 3.4 Consensus size: 25
26214095 ATGAATTTTC
* *
26214105 TCAAAATTTTACTAGGG-TAAAA-TA
1 TCAAAATTTTA-TCGGGTTAAAACCA
* *
26214129 GTCAAAATTTTATCGGGTTAAAATCG
1 -TCAAAATTTTATCGGGTTAAAACCA
26214155 TCAAAATTTTATCGGGGTT-AAACCA
1 TCAAAATTTTATC-GGGTTAAAACCA
*
26214180 TCAAATTTTTA
1 TCAAAATTTTA
26214191 CTGGGGTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
24 4 0.08
25 43 0.83
26 5 0.10
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (25 bp):
TCAAAATTTTATCGGGTTAAAACCA
Found at i:26217222 original size:10 final size:10
Alignment explanation
Indices: 26217200--26217247 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
26217190 ATATACTAAT
26217200 ATTAATACTTA
1 ATTAAT-CTTA
26217211 ATTAATCTTA
1 ATTAATCTTA
*
26217221 ATTAACCTTA
1 ATTAATCTTA
*
26217231 ATTTATTCTTTA
1 A-TTAATC-TTA
26217243 ATTAA
1 ATTAA
26217248 ACTATTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 14 0.45
11 13 0.42
12 4 0.13
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTAATCTTA
Found at i:26228109 original size:43 final size:42
Alignment explanation
Indices: 26228037--26228137 Score: 114
Period size: 43 Copynumber: 2.4 Consensus size: 42
26228027 AAGAAATCTG
** **
26228037 AGCTCGTTGAGCAGTCCAAGTTCGTGATATATGTGAGAATCCGA
1 AGCTCGTTGAGTGGTCCAAGTTCACGATATATGTG-GAATCC-A
* * *
26228081 A-CTTGTTGAGTGGTCCAAGTTCACGATATGTGTGGCATCCA
1 AGCTCGTTGAGTGGTCCAAGTTCACGATATATGTGGAATCCA
26228122 AGCTCGTTGAGTGGTC
1 AGCTCGTTGAGTGGTC
26228138 TGAGTTCATA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.04
42 18 0.38
43 27 0.56
44 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (42 bp):
AGCTCGTTGAGTGGTCCAAGTTCACGATATATGTGGAATCCA
Found at i:26235045 original size:23 final size:23
Alignment explanation
Indices: 26235002--26235045 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
26234992 AATGTTTTAT
*
26235002 GTTAGAAATAATAAAATAAGAGG
1 GTTAGAAATAATAAAAGAAGAGG
*
26235025 GTTAGTAATAA-AATAAGAAGA
1 GTTAGAAATAATAA-AAGAAGA
26235046 TGAAGGGTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (23 bp):
GTTAGAAATAATAAAAGAAGAGG
Found at i:26236421 original size:40 final size:40
Alignment explanation
Indices: 26236361--26236578 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
26236351 CGGATGATAA
* * *
26236361 CCGGGCTAAGTCCCGGAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
26236401 CCGGGCTAAGCCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
26236441 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26236481 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26236521 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
26236561 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26236579 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26238293 original size:33 final size:32
Alignment explanation
Indices: 26238240--26238431 Score: 127
Period size: 33 Copynumber: 5.9 Consensus size: 32
26238230 ATCGATGGAT
* * * *
26238240 ATTTCCGTTTCCAGTAGTACACTCGAGGTGTAC
1 ATTTCCTTTTCAAGT-GTACACACGAAGTGTAC
26238273 ATTTCCTTTTCAAGTGGTACACACGAAGTGTAC
1 ATTTCCTTTTCAAGT-GTACACACGAAGTGTAC
** * * *
26238306 ATACCCTTTGCAAGTTGTACACACAAAGTGCAC
1 ATTTCCTTTTCAAG-TGTACACACGAAGTGTAC
** **
26238339 ATAACCTTTTCAAGTGTACAC-TTATAGTGTAC
1 ATTTCCTTTTCAAGTGTACACACGA-AGTGTAC
* * * *
26238371 CTTTCCTTTTCATA-TGGTATACACAAAGTATAC
1 ATTTCCTTTTCA-AGT-GTACACACGAAGTGTAC
* * * *
26238404 CTTTCATTTCCAAGTGTACACACAAAGT
1 ATTTCCTTTTCAAGTGTACACACGAAGT
26238432 TTAAATAGCC
Statistics
Matches: 128, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
31 1 0.01
32 36 0.28
33 89 0.70
34 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (32 bp):
ATTTCCTTTTCAAGTGTACACACGAAGTGTAC
Found at i:26238478 original size:34 final size:33
Alignment explanation
Indices: 26238368--26238480 Score: 104
Period size: 34 Copynumber: 3.4 Consensus size: 33
26238358 ACTTATAGTG
*
26238368 TACCTTTCCTTTT-CATATGGTATACACAAAGTA
1 TACC-TTCCTTTTCCATGTGGTATACACAAAGTA
* * * * *
26238401 TACCTTTCATTTCCAAGT-GTACACACAAAGTT
1 TACCTTCCTTTTCCATGTGGTATACACAAAGTA
** *
26238433 TAAATAGCCTTTTCCATGTGGTATACACAAAGTA
1 TACCT-TCCTTTTCCATGTGGTATACACAAAGTA
26238467 TACCTTCCCTTTTC
1 TACCTT-CCTTTTC
26238481 ACATTCGATA
Statistics
Matches: 59, Mismatches: 17, Indels: 7
0.71 0.20 0.08
Matches are distributed among these distances:
32 21 0.36
33 16 0.27
34 22 0.37
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (33 bp):
TACCTTCCTTTTCCATGTGGTATACACAAAGTA
Found at i:26238528 original size:28 final size:28
Alignment explanation
Indices: 26238472--26238541 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
26238462 AAGTATACCT
*
26238472 TCCCTTTTCACATTCGATAGCCGAAGCTA
1 TCCCTTTTCACA-TCAATAGCCGAAGCTA
26238501 TCCCTTTTCACATCAATAGCCGAAGCTA
1 TCCCTTTTCACATCAATAGCCGAAGCTA
26238529 TCCCTTTTCACAT
1 TCCCTTTTCACAT
26238542 GGTACACACA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 28 0.70
29 12 0.30
ACGTcount: A:0.24, C:0.33, G:0.10, T:0.33
Consensus pattern (28 bp):
TCCCTTTTCACATCAATAGCCGAAGCTA
Found at i:26244015 original size:79 final size:80
Alignment explanation
Indices: 26243905--26244076 Score: 233
Period size: 79 Copynumber: 2.2 Consensus size: 80
26243895 GGACTAAGAT
*
26243905 CCGAAGGCATTTGTGCGAGATACTAATTCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAA-ATCCCGAAGGCATTTGTACGAGATACT
*
26243969 A-ATTCCGGGCTAAG-C
65 ACA-ACCGGGCTAAGTC
* ** * *
26243984 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAATCCCGAAGGCATTTGTACGAGATACTA
*
26244049 CAACCGGGCTATGTC
66 CAACCGGGCTAAGTC
26244064 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26244077 AACGAGTAGC
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
78 2 0.02
79 65 0.79
80 15 0.18
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAATCCCGAAGGCATTTGTACGAGATACTA
CAACCGGGCTAAGTC
Found at i:26244040 original size:40 final size:40
Alignment explanation
Indices: 26243852--26244076 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
26243842 TTGAATGATG
* * * * *
26243852 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAATCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26243892 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
26243932 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26243972 TCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26244011 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTACAA
1 TCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTA-AA
**
26244052 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAATCCCGAAGGCATTTG
26244077 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26244095 original size:119 final size:120
Alignment explanation
Indices: 26243852--26244082 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
26243842 TTGAATGATG
*
26243852 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
26243917 GTGCGAGATACTAATTCCGGACTAAGATCCGAAGGCATTTGTACGAGATACTAAT
66 GTGCGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAAT
* * * **
26243972 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
26244034 TTGTGCGAGTTACTACA-ACCGGGCTATG-TCCCGAAGGCATTTGAACGAG
64 TTGTGCGAGATACTA-ATACCGGACTAAGAT-CCGAAGGCATTTGAACGAG
26244083 TAGCTATATC
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 3 0.03
119 74 0.77
120 19 0.20
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAAT
Found at i:26244107 original size:79 final size:79
Alignment explanation
Indices: 26243905--26244109 Score: 211
Period size: 79 Copynumber: 2.6 Consensus size: 79
26243895 GGACTAAGAT
** * * * *
26243905 CCGAAGGCATTTGTGCGAGATACTAATTCCGGACTAAGA-TCCGAAGGCATTTGTACGAGATACT
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGG-GTAAAATTCCGAAGGCATTTGTACGAGATACT
*
26243969 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * * * *
26243984 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTAAAATTCCGAAGGCATTTGTACGAGATACTA
*
26244049 CA-ACCGGGCTATGTC
66 -ATACCGGGCTAAG-C
*
26244064 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTAAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTAAAATTCCGAAGG
26244110 TACGTGATTT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 78 0.73
80 26 0.24
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTAAAATTCCGAAGGCATTTGTACGAGATACTA
ATACCGGGCTAAGC
Found at i:26245550 original size:27 final size:27
Alignment explanation
Indices: 26245520--26245697 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
26245510 ATATTGAGTC
* *
26245520 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26245547 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
26245574 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
26245602 CGCACACTTAGTGCCCCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
26245629 CGCACACTTAGTGC-ATCAT-ATACATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* * *
26245656 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
26245683 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26245698 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26251394 original size:62 final size:62
Alignment explanation
Indices: 26251297--26251421 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 62
26251287 AATAATTTGC
*
26251297 AAAGATATTTTTGGGTGGCAGCCATAAAAACTTCTTGCTATATTATAAATAGAGCTATGGTT
1 AAAGATACTTTTGGGTGGCAGCCATAAAAACTTCTTGCTATATTATAAATAGAGCTATGGTT
26251359 AAAGATACTTTTGGGTGGCAGCCATAAAAACTTCTTGCTATATTATAAATAGAGCTATGGTT
1 AAAGATACTTTTGGGTGGCAGCCATAAAAACTTCTTGCTATATTATAAATAGAGCTATGGTT
26251421 A
1 A
26251422 GGCCTATTTT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (62 bp):
AAAGATACTTTTGGGTGGCAGCCATAAAAACTTCTTGCTATATTATAAATAGAGCTATGGTT
Found at i:26253740 original size:22 final size:22
Alignment explanation
Indices: 26253715--26253783 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
26253705 GTATTATATG
26253715 ATTTTACATATGTTATCTATTT
1 ATTTTACATATGTTATCTATTT
** * *
26253737 ATTTT-TTTATGGTAT-TATATG
1 ATTTTACATATGTTATCTAT-TT
26253758 ATTTTACATATGTTATCTATTT
1 ATTTTACATATGTTATCTATTT
26253780 ATTT
1 ATTT
26253784 ATTTTTACCT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
20 3 0.08
21 13 0.36
22 17 0.47
23 3 0.08
ACGTcount: A:0.26, C:0.06, G:0.07, T:0.61
Consensus pattern (22 bp):
ATTTTACATATGTTATCTATTT
Found at i:26253749 original size:43 final size:44
Alignment explanation
Indices: 26253702--26253788 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 44
26253692 TTGTTTGAAC
26253702 ATGGTATTATATGATTTTACATATGTTATCTATTTATTT-TTTT
1 ATGGTATTATATGATTTTACATATGTTATCTATTTATTTATTTT
26253745 ATGGTATTATATGATTTTACATATGTTATCTATTTATTTATTTT
1 ATGGTATTATATGATTTTACATATGTTATCTATTTATTTATTTT
26253789 TACCTTTTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 39 0.91
44 4 0.09
ACGTcount: A:0.26, C:0.05, G:0.09, T:0.60
Consensus pattern (44 bp):
ATGGTATTATATGATTTTACATATGTTATCTATTTATTTATTTT
Found at i:26253761 original size:21 final size:22
Alignment explanation
Indices: 26253702--26253769 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
26253692 TTGTTTGAAC
26253702 ATGGTATTATATGATTTTACAT
1 ATGGTATTATATGATTTTACAT
* * **
26253724 ATGTTATCTAT-TTATTTT-TTT
1 ATGGTAT-TATATGATTTTACAT
26253745 ATGGTATTATATGATTTTACAT
1 ATGGTATTATATGATTTTACAT
26253767 ATG
1 ATG
26253770 TTATCTATTT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 16 0.46
23 3 0.09
ACGTcount: A:0.28, C:0.04, G:0.12, T:0.56
Consensus pattern (22 bp):
ATGGTATTATATGATTTTACAT
Found at i:26263037 original size:27 final size:25
Alignment explanation
Indices: 26263002--26263055 Score: 72
Period size: 27 Copynumber: 2.1 Consensus size: 25
26262992 TGGTTGCATA
*
26263002 TTCAGTTACTTTGGGATGTTTTCTATT
1 TTCAGTTACTTT-GGATGCTTT-TATT
*
26263029 TTCATTTACTTTGGATGCTTTTATT
1 TTCAGTTACTTTGGATGCTTTTATT
26263054 TT
1 TT
26263056 AAATGTACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.24
26 8 0.32
27 11 0.44
ACGTcount: A:0.15, C:0.11, G:0.15, T:0.59
Consensus pattern (25 bp):
TTCAGTTACTTTGGATGCTTTTATT
Found at i:26263064 original size:26 final size:27
Alignment explanation
Indices: 26263008--26263064 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
26262998 CATATTCAGT
* * *
26263008 TACTTTGGGATGTTTTCTATTTTCATT
1 TACTTTGGGATGCTTTCTATTTTAATG
26263035 TACTTT-GGATGCTTT-TATTTTAAATG
1 TACTTTGGGATGCTTTCTATTTT-AATG
26263061 TACT
1 TACT
26263065 ATCATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 6 0.23
26 14 0.54
27 6 0.23
ACGTcount: A:0.19, C:0.11, G:0.14, T:0.56
Consensus pattern (27 bp):
TACTTTGGGATGCTTTCTATTTTAATG
Found at i:26263745 original size:21 final size:21
Alignment explanation
Indices: 26263715--26263775 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
26263705 AAAAGGTTAC
26263715 AGAA-TTCTACCGATAGAACT
1 AGAACTTCTACCGATAGAACT
* *
26263735 AGGACTTCTACCGATACAACT
1 AGAACTTCTACCGATAGAACT
* * *
26263756 CGAACTTCTATCGGTAGAAC
1 AGAACTTCTACCGATAGAAC
26263776 GCACTCCTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
20 3 0.09
21 30 0.91
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (21 bp):
AGAACTTCTACCGATAGAACT
Found at i:26268158 original size:16 final size:18
Alignment explanation
Indices: 26268137--26268170 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
26268127 CATGTTTTTG
26268137 TTATAAA-TAA-ATAATT
1 TTATAAATTAAGATAATT
26268153 TTATAAATTAAGATAATT
1 TTATAAATTAAGATAATT
26268171 ATCAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 3 0.19
18 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
TTATAAATTAAGATAATT
Found at i:26282182 original size:27 final size:27
Alignment explanation
Indices: 26282128--26282236 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 27
26282118 AGCATGGCTG
* * *
26282128 CCAGAACAGATGA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
26282154 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
26282181 CCAGAACAGAT-ATATGTGGCATAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
26282208 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
26282235 CC
1 CC
26282237 TGGACGCTTC
Statistics
Matches: 74, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 14 0.19
27 59 0.80
28 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:26282218 original size:54 final size:53
Alignment explanation
Indices: 26282128--26282236 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 53
26282118 AGCATGGCTG
* *
26282128 CCAGAACAGATGATGTGACAGAGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATGATGTGACAGAGCCACCAGAACAGATAAATGTGGCAGAGCCA
* * * * *
26282181 CCAGAACAGATATATGTGGCATAGCCACCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGAT-GATGTGACAGAGCCACCAGAACAGATAAATGTGGCAGAGCCA
26282235 CC
1 CC
26282237 TGGACGCTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.23
54 37 0.77
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATGATGTGACAGAGCCACCAGAACAGATAAATGTGGCAGAGCCA
Found at i:26286793 original size:118 final size:118
Alignment explanation
Indices: 26286633--26286863 Score: 381
Period size: 118 Copynumber: 2.0 Consensus size: 118
26286623 TATTTCCAGT
26286633 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* * *
26286698 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACACCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
26286751 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
26286816 CCTACACCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACACCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
26286864 ATGAAAAACA
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
118 104 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACACCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:26287680 original size:42 final size:42
Alignment explanation
Indices: 26287629--26287733 Score: 167
Period size: 42 Copynumber: 2.5 Consensus size: 42
26287619 GGGATTCTAA
*
26287629 GGCTGGAATAGGACTGTTTGGCTA-CAGGGATATAGCATTCTG
1 GGCTGGAATAGAACTGTTTGGC-AGCAGGGATATAGCATTCTG
*
26287671 GGCTGGAATAGAACTGTTTGGCAGCAGGGATATAGCATTTTG
1 GGCTGGAATAGAACTGTTTGGCAGCAGGGATATAGCATTCTG
*
26287713 GGTTGGAATAGAACTGTTTGG
1 GGCTGGAATAGAACTGTTTGG
26287734 TACCATGGAT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
41 1 0.02
42 58 0.98
ACGTcount: A:0.25, C:0.11, G:0.34, T:0.30
Consensus pattern (42 bp):
GGCTGGAATAGAACTGTTTGGCAGCAGGGATATAGCATTCTG
Done.