Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 87 of 316
Found at i:26287863 original size:15 final size:14
Alignment explanation
Indices: 26287836--26287896 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 14
26287826 ATTAATATTT
*
26287836 AAATAAAATAAAATA
1 AAATAAAAGAAAA-A
*
26287851 AAAGAAAAGAAAAA
1 AAATAAAAGAAAAA
26287865 ATAATAAAAGAAAAAA
1 A-AATAAAAG-AAAAA
26287881 TAAATAAAAAGAAAAA
1 -AAAT-AAAAGAAAAA
26287897 GAAAAATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
14 2 0.05
15 18 0.46
16 13 0.33
17 6 0.15
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (14 bp):
AAATAAAAGAAAAA
Found at i:26291691 original size:27 final size:27
Alignment explanation
Indices: 26291661--26291718 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
26291651 AGATAATTAA
26291661 AATAA-AATCTTAA-ATTTGAATAATCCT
1 AATAATAATCTTAATA-TT-AATAATCCT
* *
26291688 AATAATTATCTTAATATTAATTATCCT
1 AATAATAATCTTAATATTAATAATCCT
26291715 AATA
1 AATA
26291719 GAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 17 0.63
28 9 0.33
29 1 0.04
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (27 bp):
AATAATAATCTTAATATTAATAATCCT
Found at i:26297104 original size:27 final size:26
Alignment explanation
Indices: 26297050--26297131 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
26297040 AGTATGGCTG
* * *
26297050 CCAGAACAGATGATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
26297076 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
* *
26297103 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
26297130 CC
1 CC
26297132 TGGACGCTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 12 0.24
27 35 0.71
28 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:26303287 original size:21 final size:21
Alignment explanation
Indices: 26303252--26303313 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
26303242 ATCATACTTT
* *
26303252 CTGCTCGCCTCTGCCTCCCTCG
1 CTGCT-GCCGCTGCCTCCCTCA
26303274 CTGCTGCCGCTGCCTCCCTCA
1 CTGCTGCCGCTGCCTCCCTCA
* * *
26303295 CTACTGTCGTTGCCTCCCT
1 CTGCTGCCGCTGCCTCCCT
26303314 ATCTGCTACC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
21 30 0.86
22 5 0.14
ACGTcount: A:0.03, C:0.50, G:0.18, T:0.29
Consensus pattern (21 bp):
CTGCTGCCGCTGCCTCCCTCA
Found at i:26303761 original size:13 final size:14
Alignment explanation
Indices: 26303735--26303763 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26303725 ACTAATGACA
26303735 AATTAAATCATTAT
1 AATTAAATCATTAT
26303749 AATTAAA-CATTAT
1 AATTAAATCATTAT
26303762 AA
1 AA
26303764 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAATCATTAT
Found at i:26308822 original size:9 final size:9
Alignment explanation
Indices: 26308808--26308951 Score: 77
Period size: 9 Copynumber: 16.0 Consensus size: 9
26308798 TAACTATAAT
26308808 TAAGTTATG
1 TAAGTTATG
26308817 TAAGTTATG
1 TAAGTTATG
* * *
26308826 ATATGATATA
1 -TAAGTTATG
*
26308836 T-ATTTATG
1 TAAGTTATG
26308844 T-A-TTATG
1 TAAGTTATG
26308851 TAAGTTATG
1 TAAGTTATG
*
26308860 TAAATTATG
1 TAAGTTATG
26308869 TAAGTTATCCG
1 TAAGTTAT--G
26308880 -AA-TTATG
1 TAAGTTATG
*
26308887 TAAATTATG
1 TAAGTTATG
*
26308896 TAAGATATGATA
1 TAAG-T-T-ATG
*
26308908 TATATTTATG
1 TA-AGTTATG
*
26308918 T-A-TAATG
1 TAAGTTATG
26308925 TAAGTTATG
1 TAAGTTATG
*
26308934 TAAATTATG
1 TAAGTTATG
*
26308943 TAAGATATG
1 TAAGTTATG
26308952 ATATATATCT
Statistics
Matches: 104, Mismatches: 18, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
7 12 0.12
8 10 0.10
9 61 0.59
10 12 0.12
11 3 0.03
12 5 0.05
13 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.16, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:26308868 original size:18 final size:18
Alignment explanation
Indices: 26308845--26308951 Score: 92
Period size: 18 Copynumber: 5.8 Consensus size: 18
26308835 ATATTTATGT
26308845 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
***
26308863 ATTATGTAAGTTATCCGA
1 ATTATGTAAGTTATGTAA
*
26308881 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
26308899 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
*
26308919 ATAATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
26308937 ATTATGTAAGATATG
1 ATTATGTAAGTTATG
26308952 ATATATATCT
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
16 7 0.10
17 4 0.06
18 42 0.61
19 4 0.06
20 1 0.01
21 4 0.06
22 7 0.10
ACGTcount: A:0.39, C:0.02, G:0.16, T:0.43
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:26309186 original size:16 final size:16
Alignment explanation
Indices: 26309165--26309217 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
26309155 GAGATTATGG
*
26309165 AAAATCACATGGGAAA
1 AAAATCACATGGAAAA
*
26309181 AAAATCACATAGAAAA
1 AAAATCACATGGAAAA
26309197 AAAATCACAT-GAAAA
1 AAAATCACATGGAAAA
*
26309212 ATAATC
1 AAAATC
26309218 TAAGGATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
15 10 0.29
16 24 0.71
ACGTcount: A:0.62, C:0.13, G:0.09, T:0.15
Consensus pattern (16 bp):
AAAATCACATGGAAAA
Found at i:26313094 original size:40 final size:40
Alignment explanation
Indices: 26312993--26313094 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
26312983 ATTTAGTGGC
* * * **
26312993 GTTTTACAAAAGCGTCGCTAAATCTCAATTTTTTGCAGTG
1 GTTTTACAAAAGCGCCGCTAATTCTCAATTTTTAGCAGCA
* *
26313033 GTTTTACAAAAGCGCCACTAATTCTCTATTTTTAGCAGCA
1 GTTTTACAAAAGCGCCGCTAATTCTCAATTTTTAGCAGCA
* *
26313073 TTTTTACAAAAACGCCGCTAAT
1 GTTTTACAAAAGCGCCGCTAAT
26313095 GCCTCTGCAG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (40 bp):
GTTTTACAAAAGCGCCGCTAATTCTCAATTTTTAGCAGCA
Found at i:26314247 original size:41 final size:43
Alignment explanation
Indices: 26314165--26314250 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
26314155 GATAACAAAC
*
26314165 CCGGCCCATACCATAAACTTAACATATATACTATACCATTGAA
1 CCGGCCCAAACCATAAACTTAACATATATACTATACCATTGAA
* * *
26314208 CCGGCCTAAACCATAAACTTAA-A-ATATATTCTACCATTGAA
1 CCGGCCCAAACCATAAACTTAACATATATACTATACCATTGAA
26314249 CC
1 CC
26314251 CTAAACCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 18 0.46
42 1 0.03
43 20 0.51
ACGTcount: A:0.40, C:0.28, G:0.07, T:0.26
Consensus pattern (43 bp):
CCGGCCCAAACCATAAACTTAACATATATACTATACCATTGAA
Found at i:26314463 original size:28 final size:28
Alignment explanation
Indices: 26314432--26314498 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
26314422 AGTTTATGGA
* *
26314432 TTAGTGTTTATGGTTT-ATGTTTTAAAAT
1 TTAGGGTTTAGGGTTTAATG-TTTAAAAT
*
26314460 TTAGGGTTTAGGGTTTAATGTTTAAGAT
1 TTAGGGTTTAGGGTTTAATGTTTAAAAT
26314488 TTAAGGGTTTA
1 TT-AGGGTTTA
26314499 CAGAAATCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 23 0.68
29 11 0.32
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (28 bp):
TTAGGGTTTAGGGTTTAATGTTTAAAAT
Found at i:26314483 original size:21 final size:21
Alignment explanation
Indices: 26314417--26314498 Score: 56
Period size: 21 Copynumber: 3.9 Consensus size: 21
26314407 GGTTTAGGGT
* * * *
26314417 TTTAGAGTTTATGGATTAGTG
1 TTTAGGGTTTAGGGTTTAATG
* * * **
26314438 TTTATGGTTTATGTTTTAAAA
1 TTTAGGGTTTAGGGTTTAATG
26314459 TTTAGGGTTTAGGGTTTAATG
1 TTTAGGGTTTAGGGTTTAATG
* *
26314480 TTTAAGATTTAAGGGTTTA
1 TTTAGGGTTT-AGGGTTTA
26314499 CAGAAATCCA
Statistics
Matches: 46, Mismatches: 14, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
21 38 0.83
22 8 0.17
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTAATG
Found at i:26314832 original size:40 final size:41
Alignment explanation
Indices: 26314787--26315196 Score: 507
Period size: 40 Copynumber: 10.2 Consensus size: 41
26314777 AACATTTTGC
* *
26314787 GGCGTTTGGACCAAAAACACCGCTATTGATGAG-TTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
26314827 GGCGTTTGGACCAAAAACGCCGCTATTGATCA-TTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
* *
26314867 GGCGTTTGGGA-TAAAAACGCCGCTATTGATAAGTTTTTAGT
1 GGCGTTT-GGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
*
26314908 GGCGTTT-GACCAAAAACGCCGCTATTCA-CAAGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGATC-AGTTTTTAGT
** * * *
26314948 GGCGTTTGGAAGAAAAATGCCGCTATTAATTAGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * * * * * *
26314989 GGTGCTTGGGCAAAAAATGCCGTTATTAATCAATTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
**
26315030 GGCGTTTGGA-CAAAAACGCCATTATTGATCAGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
26315070 GGCGTTTGG-CCAAAAACGCCGCTATTGATCAGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
*
26315110 GGCGTTTTG-CCAAAAACGCCGCTATTGATCAGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
26315150 GGCGTTTTGG-CCAAAAATGCCGCTATTGTTCAGTTTTT-GC
1 GGCG-TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
26315190 GGCGTTT
1 GGCGTTT
26315197 TTATTAAACA
Statistics
Matches: 326, Mismatches: 35, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
39 5 0.02
40 206 0.63
41 115 0.35
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (41 bp):
GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
Found at i:26315878 original size:10 final size:9
Alignment explanation
Indices: 26315863--26315933 Score: 52
Period size: 10 Copynumber: 7.1 Consensus size: 9
26315853 TAAAAAAATA
26315863 ATAATTTCTT
1 ATAATTT-TT
26315873 ATAATTTCTT
1 ATAATTT-TT
*
26315883 ATAATGTTTA
1 ATAAT-TTTT
26315893 ATAATTTTT
1 ATAATTTTT
*
26315902 AAATAATTTCCT
1 --ATAATTT-TT
*
26315914 ATCATTTTT
1 ATAATTTTT
26315923 ATAATTATTT
1 ATAATT-TTT
26315933 A
1 A
26315934 AGAAACTACT
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
9 9 0.18
10 31 0.62
11 9 0.18
12 1 0.02
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.56
Consensus pattern (9 bp):
ATAATTTTT
Found at i:26315911 original size:31 final size:30
Alignment explanation
Indices: 26315861--26315934 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 30
26315851 TTTAAAAAAA
*
26315861 TAATAATTTCTT--ATAATTTCTTATAATGTT
1 TAATAATTT-TTAAATAATTTCCTATAAT-TT
*
26315891 TAATAATTTTTAAATAATTTCCTATCATTT
1 TAATAATTTTTAAATAATTTCCTATAATTT
*
26315921 TTATAATTATTTAA
1 TAATAATT-TTTAA
26315935 GAAACTACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
29 2 0.05
30 18 0.47
31 18 0.47
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.55
Consensus pattern (30 bp):
TAATAATTTTTAAATAATTTCCTATAATTT
Found at i:26318186 original size:19 final size:20
Alignment explanation
Indices: 26318157--26318212 Score: 78
Period size: 19 Copynumber: 2.8 Consensus size: 20
26318147 TCTCTAGCTG
26318157 TAAGATTAAAATTAACCTTT
1 TAAGATTAAAATTAACCTTT
*
26318177 TAAG-TTAAAATTAACTTTT
1 TAAGATTAAAATTAACCTTT
26318196 TGAAGGATTAAAATTAA
1 T-AA-GATTAAAATTAA
26318213 TTTTTAATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 15 0.47
20 6 0.19
21 1 0.03
22 10 0.31
ACGTcount: A:0.46, C:0.05, G:0.09, T:0.39
Consensus pattern (20 bp):
TAAGATTAAAATTAACCTTT
Found at i:26322094 original size:28 final size:27
Alignment explanation
Indices: 26322054--26322145 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 27
26322044 TGGGAAGCAG
26322054 TTGGGCCTGATGGGTCATATGAATGTGA
1 TTGGGCCTGATGGG-CATATGAATGTGA
* *
26322082 TTGGGCCTGATGGGCAATATAAATATGA
1 TTGGGCCTGATGGGC-ATATGAATGTGA
* * * *
26322110 TTAGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGG-CATATGAATGTGA
26322138 TTGGGCCT
1 TTGGGCCT
26322146 AAAGGGGCCA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 1 0.02
28 51 0.96
29 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (27 bp):
TTGGGCCTGATGGGCATATGAATGTGA
Found at i:26332126 original size:27 final size:27
Alignment explanation
Indices: 26332096--26332378 Score: 290
Period size: 27 Copynumber: 10.6 Consensus size: 27
26332086 TAATAAAGAG
26332096 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
26332123 AAATTACCGAAATACCTTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
26332149 AAATTACTGAATTACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
26332176 AAATTA-TCGAAATACCCTTGA-CTATA
1 AAATTACT-GAAATACCCTCGATTTGTA
** *
26332202 AAATTACCAAAATAACCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
26332229 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
26332256 AAATTACCAAAATACCCTCTATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
26332283 AAATTACTGAAATACCCTCTA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
**
26332309 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
26332336 AATTTA-TCGAAACACCCCCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
26332363 AAATTA-TCGAAATACC
1 AAATTACT-GAAATACC
26332379 TTTGTAGTGT
Statistics
Matches: 217, Mismatches: 33, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
26 65 0.30
27 152 0.70
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:26332175 original size:53 final size:53
Alignment explanation
Indices: 26332095--26332407 Score: 331
Period size: 53 Copynumber: 5.9 Consensus size: 53
26332085 ATAATAAAGA
** *
26332095 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCTTCGATTGT
1 GAAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
** * * * * *
26332148 GAAATTACTGAATTACCCTCGATTTGTAAAATTATCGAAATACCCTTGACTAT
1 GAAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* * *
26332201 AAAATTACCAAAATAACCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGT
1 GAAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGT
* * * * *
26332255 AAAATTACCAAAATACCCTCTATTTGTGAAATTACTGAAATACCCTCTATTGT
1 GAAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* * * *
26332308 GAAATTACCAAAATACCCTCGATTTGTAAATTTATCGAAACACCCCCGATTTGT
1 GAAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGT
* * * * * * *
26332362 AAAATTATCGAAATACCTTTG-TAGTGTAAAATTATCGAAATACCCT
1 GAAATTACCAAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
26332408 TGTAGTGTAA
Statistics
Matches: 217, Mismatches: 40, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
53 133 0.61
54 84 0.39
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (53 bp):
GAAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
Found at i:26332377 original size:80 final size:80
Alignment explanation
Indices: 26332096--26332378 Score: 354
Period size: 80 Copynumber: 3.5 Consensus size: 80
26332086 TAATAAAGAG
* **
26332096 AAATTA-CTGAAATACCCTCGATTTGTAAAATTACCGAAATACCTTCGATTGTGAAATTACTGAA
1 AAATTATC-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACCAAA
*
26332160 TTACCCTCGATTTGTA
65 ATACCCTCGATTTGTA
* * * * * *
26332176 AAATTATCGAAATACCCTTGA-CTATAAAATTACCAAAATAACCTCGATTTGTAAAATTACCAAA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTGAAATTACCAAA
26332240 ATACCCTCGATTTGTA
65 ATACCCTCGATTTGTA
* * * * * *
26332256 AAATTACCAAAATACCCTCTATTTGTGAAATTACTGAAATACCCTCTATTGTGAAATTACCAAAA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACCAAAA
26332321 TACCCTCGATTTGTA
66 TACCCTCGATTTGTA
* * * *
26332336 AATTTATCGAAACACCCCCGATTTGTAAAATTATCGAAATACC
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACC
26332379 TTTGTAGTGT
Statistics
Matches: 169, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
79 21 0.12
80 128 0.76
81 20 0.12
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (80 bp):
AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACCAAAA
TACCCTCGATTTGTA
Found at i:26332389 original size:27 final size:27
Alignment explanation
Indices: 26332172--26332447 Score: 136
Period size: 27 Copynumber: 10.3 Consensus size: 27
26332162 ACCCTCGATT
*
26332172 TGTAAAATTATCGAAATACCCTTG-AC
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * * * *
26332198 TATAAAATTACCAAAATAACCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* * * *
26332225 TGTAAAATTACCAAAATACCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* * * *
26332252 TGTAAAATTACCAAAATACCC-TCTATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* * *
26332279 TGTGAAATTA-CTGAAATACCC-TCTAT
1 TGTAAAATTATC-GAAATACCCTTGTAG
* * * * *
26332305 TGTGAAATTACCAAAATACCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* * ** *
26332332 TGTAAATTTATCGAAACACCCCCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
*
26332359 TGTAAAATTATCGAAATACCTTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
26332386 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * *
26332413 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
26332440 GGTAAAAT
1 TGTAAAAT
26332448 GACTAGTTTG
Statistics
Matches: 210, Mismatches: 33, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
26 41 0.20
27 168 0.80
28 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:26334156 original size:48 final size:48
Alignment explanation
Indices: 26334036--26334267 Score: 313
Period size: 48 Copynumber: 4.8 Consensus size: 48
26334026 AGGGTAAGAT
*
26334036 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATATCGAG
* * * *
26334085 TGCCAATGCCATGTTCCAAACATGGTCTTACACTAGTTCACATATCGAG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * *
26334134 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
** * * *
26334182 GCCGATGCCATGTTTCAAACATGGTCTTACACTACCTCACATATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
26334230 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
26334268 TAATAACCCT
Statistics
Matches: 157, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
48 124 0.79
49 1 0.01
50 32 0.20
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
Found at i:26334231 original size:96 final size:97
Alignment explanation
Indices: 26334036--26334272 Score: 388
Period size: 96 Copynumber: 2.5 Consensus size: 97
26334026 AGGGTAAGAT
**
26334036 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGCCAATGCCATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-ATATCAATGCCAATGCCATGTTC
**
26334101 CAAACATGGTCTTACACTAGTTCACATATCGAG
65 CAAACATGGTCTTACACTACCTCACATATCGAG
* *
26334134 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ATATCAATGCCGATGCCATGTTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATATCAATGCCAATGCCATGTTCC
*
26334198 AAACATGGTCTTACACTACCTCACATATTGAG
66 AAACATGGTCTTACACTACCTCACATATCGAG
26334230 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-AATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATA
26334273 ACCCTAGTAT
Statistics
Matches: 131, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
96 91 0.69
98 40 0.31
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAATATCAATGCCAATGCCATGTTCC
AAACATGGTCTTACACTACCTCACATATCGAG
Found at i:26339923 original size:40 final size:40
Alignment explanation
Indices: 26339854--26340052 Score: 318
Period size: 39 Copynumber: 5.1 Consensus size: 40
26339844 AACCCAAGTA
* *
26339854 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26339893 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26339933 CCTTCGGGACTT-GCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26339972 CCTTCGGGACTTAGCCCGGATATAGTAACTCG-A-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26340010 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26340049 CCTT
1 CCTT
26340053 GGATCTTAGT
Statistics
Matches: 150, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
37 24 0.16
38 11 0.07
39 61 0.41
40 54 0.36
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26339985 original size:79 final size:78
Alignment explanation
Indices: 26339854--26340052 Score: 314
Period size: 79 Copynumber: 2.6 Consensus size: 78
26339844 AACCCAAGTA
* *
26339854 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
26339918 TAACTCACACAAATG
66 TAACTC-CA-AAATG
26339933 CCTTCGGGACTT-GCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
26339997 TAACTCGAAAATG
66 TAACTCCAAAATG
* *
26340010 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
26340053 GGATCTTAGT
Statistics
Matches: 113, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
76 6 0.05
77 39 0.35
78 2 0.02
79 66 0.58
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCCAAAATG
Found at i:26341382 original size:13 final size:13
Alignment explanation
Indices: 26341359--26341392 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
26341349 TTATTTTATT
26341359 ATTTCTAACACAAA
1 ATTT-TAACACAAA
26341373 ATTTTAACACAAA
1 ATTTTAACACAAA
26341386 ATGTTTA
1 AT-TTTA
26341393 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:26345196 original size:42 final size:43
Alignment explanation
Indices: 26345087--26345243 Score: 110
Period size: 43 Copynumber: 3.7 Consensus size: 43
26345077 AGCTCGTACA
* * **
26345087 ATGCCAAC-GTCCAAGACTTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATAAAATCAAATATCG
* *
26345130 ATGCCACTGTCTC-GAACAGGGTCTTACATAAAATCAAATAT-G
1 ATGCCACTGTCCCAG-ACATGGTCTTACATAAAATCAAATATCG
* * *
26345172 ATGCTGA-TGTCCCAGACATGGTCTTACACATAAATCATAA-GTCG
1 ATGC-CACTGTCCCAGACATGGTCTTACATA-AAATCA-AATATCG
* * *
26345216 ATTCCAAC-GTCCTATACATGGTCTTACA
1 ATGCC-ACTGTCCCAGACATGGTCTTACA
26345244 CGATAACACA
Statistics
Matches: 90, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
42 26 0.29
43 39 0.43
44 25 0.28
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACATAAAATCAAATATCG
Found at i:26355660 original size:43 final size:44
Alignment explanation
Indices: 26355562--26355661 Score: 118
Period size: 42 Copynumber: 2.3 Consensus size: 44
26355552 CAGACTTAGT
* *
26355562 CTTACATGT-AATCAAATATCGATGACATTGTCCCAAACAGGGT
1 CTTACAAGTAAATCAAATATCGATGACATTGTCCCAAACAGGGC
* *
26355605 CTTACAAG-AAATCAAATAT-GATGTCGA-TGTCCCAAACATGGC
1 CTTACAAGTAAATCAAATATCGATGAC-ATTGTCCCAAACAGGGC
*
26355647 CTTACACGTAAATCA
1 CTTACAAGTAAATCA
26355662 TAAGTCGATG
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
42 25 0.51
43 24 0.49
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (44 bp):
CTTACAAGTAAATCAAATATCGATGACATTGTCCCAAACAGGGC
Found at i:26374721 original size:43 final size:42
Alignment explanation
Indices: 26374612--26374759 Score: 142
Period size: 43 Copynumber: 3.5 Consensus size: 42
26374602 ATGCCAACAT
* *
26374612 CCAGACTTGGTCTTACATGT-AATCAAATATCGATGCCACTGTC
1 CCAGACTTGGTCTTACACGTAAATCAAATA-CGATG-CAATGTC
* * * *
26374655 CCAGA-TAGGGTCTTACAC-AAAATCAAATACAATGTCGATGTC
1 CCAGACT-TGGTCTTACACGTAAATCAAATACGATG-CAATGTC
26374697 CCAGACTTGGTCTTACACGTAAATCATAAGTA-GATGCTAATGTC
1 CCAGACTTGGTCTTACACGTAAATCA-AA-TACGATGC-AATGTC
*
26374741 CCAGACGTGGTCTTACACG
1 CCAGACTTGGTCTTACACG
26374760 ATAACACATA
Statistics
Matches: 86, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
42 25 0.29
43 31 0.36
44 28 0.33
45 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
CCAGACTTGGTCTTACACGTAAATCAAATACGATGCAATGTC
Found at i:26376306 original size:30 final size:30
Alignment explanation
Indices: 26376271--26376341 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
26376261 GGGCAAACCC
*
26376271 TGTGTCACACACAGTCTAGAAACATGCCCA
1 TGTGTCACACACAGTCTAGAAACACGCCCA
* * *
26376301 TGTGTCACACACGGTCTAGACACACGCCCG
1 TGTGTCACACACAGTCTAGAAACACGCCCA
26376331 TGTGTCTACAC
1 TGTGTC-ACAC
26376342 GTGTAGACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 32 0.89
31 4 0.11
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (30 bp):
TGTGTCACACACAGTCTAGAAACACGCCCA
Found at i:26377181 original size:48 final size:48
Alignment explanation
Indices: 26377110--26377291 Score: 204
Period size: 48 Copynumber: 3.8 Consensus size: 48
26377100 CGGTGCCGGT
* *
26377110 GCCGATGCCATGTTCCAAACATGGTCATACACTAGCTCATATATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATATCGAG
** * * * *
26377158 GCCGATGCCATGTCCCGGACATGGTCTTACATTAGCTC-TCTTATCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATATCGAG
*** * * *
26377206 ATTGATGCCATGTTCCAAATATGGTCTTACACTAGCTCATAAATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATATCGAG
* *
26377254 GCCGATGCCATGTCTCAGACATGGTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC
26377292 TCATAACCCT
Statistics
Matches: 105, Mismatches: 27, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
47 1 0.01
48 103 0.98
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATATCGAG
Found at i:26377277 original size:96 final size:96
Alignment explanation
Indices: 26377113--26377293 Score: 308
Period size: 96 Copynumber: 1.9 Consensus size: 96
26377103 TGCCGGTGCC
* *
26377113 GATGCCATGTTCCAAACATGGTCATACACTAGCTCATATATCGAGGCCGATGCCATGTCCCGGAC
1 GATGCCATGTTCCAAACATGGTCATACACTAGCTCATAAATCGAGGCCGATGCCATGTCCCAGAC
*
26377178 ATGGTCTTACATTAGCTCTCTTATCAATATT
66 ATGGTCTTACACTAGCTCTCTTATCAATATT
* * *
26377209 GATGCCATGTTCCAAATATGGTCTTACACTAGCTCATAAATCGAGGCCGATGCCATGTCTCAGAC
1 GATGCCATGTTCCAAACATGGTCATACACTAGCTCATAAATCGAGGCCGATGCCATGTCCCAGAC
26377274 ATGGTCTTACACTAGCTCTC
66 ATGGTCTTACACTAGCTCTC
26377294 ATAACCCTAG
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 79 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (96 bp):
GATGCCATGTTCCAAACATGGTCATACACTAGCTCATAAATCGAGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCTTATCAATATT
Found at i:26385461 original size:67 final size:67
Alignment explanation
Indices: 26385380--26385564 Score: 232
Period size: 67 Copynumber: 2.8 Consensus size: 67
26385370 CATGTGAATG
* * * *
26385380 TTCTCTAGCTAATGTGGGATTAAAAAT-ATTTTTTAATG-AAATAGTGAAAAAGTGAACTATGAG
1 TTCTCTAGCCAATGTGAGATTAAAATTAACTTTTTAATGAAAATAGTG--AAAGTGAACTATGAG
26385443 AGTA
64 AGTA
* *
26385447 TTCTCTAGCCAATGTGAGATTAAAATTAACTTTTCAATGAAAATAGTGAAAGTTAACTATGAGAG
1 TTCTCTAGCCAATGTGAGATTAAAATTAACTTTTTAATGAAAATAGTGAAAGTGAACTATGAGAG
26385512 TA
66 TA
* * ** *
26385514 TTATCTAGTCGGTGTGTGATTAAAATTAACTTTTTAATGAAAATAGT-AAAG
1 TTCTCTAGCCAATGTGAGATTAAAATTAACTTTTTAATGAAAATAGTGAAAG
26385565 AAATTGTTCT
Statistics
Matches: 104, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
66 4 0.04
67 83 0.80
68 9 0.09
69 8 0.08
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (67 bp):
TTCTCTAGCCAATGTGAGATTAAAATTAACTTTTTAATGAAAATAGTGAAAGTGAACTATGAGAG
TA
Found at i:26386999 original size:14 final size:14
Alignment explanation
Indices: 26386980--26387012 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
26386970 ATGATTTATT
26386980 TATGTATGAATTTC
1 TATGTATGAATTTC
26386994 TATGTATGAATTTC
1 TATGTATGAATTTC
26387008 TATGT
1 TATGT
26387013 TTGATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.06, G:0.15, T:0.52
Consensus pattern (14 bp):
TATGTATGAATTTC
Found at i:26391470 original size:46 final size:46
Alignment explanation
Indices: 26391420--26391592 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
26391410 TTGAGCATCC
26391420 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * *
26391466 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* *
26391513 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
*
26391559 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26391593 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:26391573 original size:93 final size:93
Alignment explanation
Indices: 26391414--26391584 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
26391404 GGATGATTGA
* *
26391414 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
26391479 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
26391507 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
26391572 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26391585 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26405939 original size:13 final size:13
Alignment explanation
Indices: 26405921--26405945 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26405911 TGAATTATTT
26405921 TAATCAATCATTG
1 TAATCAATCATTG
26405934 TAATCAATCATT
1 TAATCAATCATT
26405946 CTCTTAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
TAATCAATCATTG
Found at i:26419993 original size:24 final size:26
Alignment explanation
Indices: 26419960--26420010 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
26419950 ATATATCAAT
26419960 TTTTAAAAAATAAAT-AT-ATAAAAA
1 TTTTAAAAAATAAATAATAATAAAAA
* *
26419984 TTTTACAAAATATATAATAATAAAAA
1 TTTTAAAAAATAAATAATAATAAAAA
26420010 T
1 T
26420011 ATAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 13 0.57
25 2 0.09
26 8 0.35
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (26 bp):
TTTTAAAAAATAAATAATAATAAAAA
Found at i:26420006 original size:26 final size:24
Alignment explanation
Indices: 26419960--26420010 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 24
26419950 ATATATCAAT
26419960 TTTTAAAAAATAAATATATAAAAA
1 TTTTAAAAAATAAATATATAAAAA
26419984 TTTTACAAAATATATAATA-ATAAAAA
1 TTTTA-AAAA-ATA-AATATATAAAAA
26420010 T
1 T
26420011 ATAAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.21
25 4 0.17
26 11 0.46
27 4 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
TTTTAAAAAATAAATATATAAAAA
Found at i:26420022 original size:14 final size:14
Alignment explanation
Indices: 26419965--26420024 Score: 57
Period size: 14 Copynumber: 3.9 Consensus size: 14
26419955 TCAATTTTTA
*
26419965 AAAAATAAATATAT
1 AAAAATAAAAATAT
26419979 AAAAATTTTACAAAATAT
1 AAAAA---TA-AAAATAT
26419997 ATAATAATAAAAATAT
1 A-AA-AATAAAAATAT
26420013 AAAAATAAAAAT
1 AAAAATAAAAAT
26420025 TCATTAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
14 14 0.36
15 2 0.05
16 8 0.21
17 4 0.10
18 7 0.18
19 2 0.05
20 2 0.05
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAAATAAAAATAT
Found at i:26424940 original size:29 final size:29
Alignment explanation
Indices: 26424880--26424941 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
26424870 CTATATAACA
* * *
26424880 TGAGTGTCTAAATTGAAAATTTTTTATTT
1 TGAGTGTCTAAAATGAAAATATTTTATAT
*
26424909 TGAGTGTTTAAAAT-AAAATATTTTATAAT
1 TGAGTGTCTAAAATGAAAATATTTTAT-AT
26424938 TGAG
1 TGAG
26424942 CGAAGAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.47
Consensus pattern (29 bp):
TGAGTGTCTAAAATGAAAATATTTTATAT
Found at i:26432969 original size:20 final size:20
Alignment explanation
Indices: 26432928--26432969 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26432918 CTATAGTTTA
*
26432928 AAAAATATTAAAAAATCTAT
1 AAAAATATTAAAAAAACTAT
26432948 AAAAATAATTAAAAAAAC-AT
1 AAAAAT-ATTAAAAAAACTAT
26432968 AA
1 AA
26432970 TTCTTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATATTAAAAAAACTAT
Found at i:26438320 original size:25 final size:26
Alignment explanation
Indices: 26438272--26438320 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
26438262 GATTAAATCT
*
26438272 AAATATAAAATAAATAATTAAAATTC
1 AAATATAAAATAAATAACTAAAATTC
26438298 AAATA-AAAATAAAT-ACTAGAAAT
1 AAATATAAAATAAATAACTA-AAAT
26438321 AAATTGAACG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 13 0.62
26 5 0.24
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (26 bp):
AAATATAAAATAAATAACTAAAATTC
Found at i:26443634 original size:104 final size:104
Alignment explanation
Indices: 26443454--26443653 Score: 310
Period size: 104 Copynumber: 1.9 Consensus size: 104
26443444 GCGTGCCAGG
* *
26443454 CCGTGTGCTACACACGGCTGAGACAAACACCCGTGTCTCAGGCCATGTGGCCTCAAAATAAACTT
1 CCGTGTGCTACACACGGCTGAGACAAACACCAGTGTCTCAGGCCATGTGGCCTCAAAATAAACCT
*
26443519 TAAAACTCAAGTTTACCATTTCAAATTGCTTCAACACGA
66 TAAAACACAAGTTTACCATTTCAAATTGCTTCAACACGA
* * * * * * *
26443558 CCGTGTGCTAGACACTGCTGAGACACACGCCAGTGTCTTAGGCCATGTGGCCTTAAAATGAACCT
1 CCGTGTGCTACACACGGCTGAGACAAACACCAGTGTCTCAGGCCATGTGGCCTCAAAATAAACCT
26443623 TAAAACACAAGTTTACCATTTCAAATTGCTT
66 TAAAACACAAGTTTACCATTTCAAATTGCTT
26443654 GGACCTTAAA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
104 86 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (104 bp):
CCGTGTGCTACACACGGCTGAGACAAACACCAGTGTCTCAGGCCATGTGGCCTCAAAATAAACCT
TAAAACACAAGTTTACCATTTCAAATTGCTTCAACACGA
Found at i:26446464 original size:12 final size:12
Alignment explanation
Indices: 26446434--26446466 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
26446424 TATATATTTT
26446434 AAAATT-ATATA
1 AAAATTAATATA
26446445 AAAA-TAATATA
1 AAAATTAATATA
26446456 AAAATTAATAT
1 AAAATTAATAT
26446467 GGGCTGGGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:26448976 original size:37 final size:37
Alignment explanation
Indices: 26448901--26448976 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
26448891 AAAGAAGCTT
* *
26448901 AATCGAGCAAATCCTACTGTTATACTGAATGAAGCTC
1 AATCGAGCAAATCCTACTGTTATACAGAATGAAACTC
* * *
26448938 AATCTAGCAAATCCTATTGTTATACAGAGTGAAACTC
1 AATCGAGCAAATCCTACTGTTATACAGAATGAAACTC
26448975 AA
1 AA
26448977 ACAAGTAGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (37 bp):
AATCGAGCAAATCCTACTGTTATACAGAATGAAACTC
Found at i:26451285 original size:15 final size:15
Alignment explanation
Indices: 26451265--26451294 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26451255 ATAATCCTAA
*
26451265 TAATTATCTTAATAT
1 TAATTATCCTAATAT
26451280 TAATTATCCTAATAT
1 TAATTATCCTAATAT
26451295 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:26451879 original size:11 final size:11
Alignment explanation
Indices: 26451863--26451887 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26451853 TTAATATGAC
26451863 TTTTTTTTCTT
1 TTTTTTTTCTT
26451874 TTTTTTTTCTT
1 TTTTTTTTCTT
26451885 TTT
1 TTT
26451888 GTTATAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:26454672 original size:10 final size:9
Alignment explanation
Indices: 26454657--26454742 Score: 54
Period size: 10 Copynumber: 9.3 Consensus size: 9
26454647 AGAAATTTAT
26454657 AAATATAATA
1 AAATA-AATA
**
26454667 AAATATTTAA
1 AAATAAAT-A
*
26454677 AAATAAAACA
1 AAAT-AAATA
26454687 AAATGAAATA
1 AAAT-AAATA
26454697 AAATACAAT-
1 AAATA-AATA
*
26454706 -AAGAAATA
1 AAATAAATA
26454714 AAATAAAT-
1 AAATAAATA
26454722 AAATAAATA
1 AAATAAATA
26454731 AAA-ATAATA
1 AAATA-AATA
26454740 AAA
1 AAA
26454743 ATAGAAATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
7 3 0.05
8 12 0.20
9 18 0.30
10 26 0.43
11 1 0.02
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (9 bp):
AAATAAATA
Found at i:26454684 original size:5 final size:5
Alignment explanation
Indices: 26454676--26454755 Score: 60
Period size: 5 Copynumber: 16.0 Consensus size: 5
26454666 AAAATATTTA
* * *
26454676 AAAAT AAAAC AAAAT GAAAT AAAAT ACAAT AAGAAAT AAAAT -AAAT -AAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -A-AAAT AAAAT AAAAT AAAAT
*
26454726 -AAAT AAAA- ATAAT AAAAAT AGAAAT AAAAT
1 AAAAT AAAAT AAAAT -AAAAT A-AAAT AAAAT
26454756 TTAAAATTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
4 15 0.25
5 32 0.52
6 11 0.18
7 3 0.05
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:26454689 original size:20 final size:20
Alignment explanation
Indices: 26454651--26454690 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26454641 AAGAAGAGAA
* * *
26454651 ATTTATAAATATAATAAAAT
1 ATTTAAAAATAAAACAAAAT
26454671 ATTTAAAAATAAAACAAAAT
1 ATTTAAAAATAAAACAAAAT
26454691 GAAATAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTTAAAAATAAAACAAAAT
Found at i:26454711 original size:17 final size:16
Alignment explanation
Indices: 26454663--26454753 Score: 73
Period size: 17 Copynumber: 5.7 Consensus size: 16
26454653 TTATAAATAT
**
26454663 AATAAAATATTTAA-A
1 AATAAAATAAATAAGA
* *
26454678 AATAAAACAAA-ATGA
1 AATAAAATAAATAAGA
26454693 AATAAAATACAATAAGA
1 AATAAAATA-AATAAGA
*
26454710 AATAAAATAAATAAATA
1 AATAAAATAAAT-AAGA
26454727 AATAAAA-ATAATAA-A
1 AATAAAATA-AATAAGA
26454742 AATAGAAATAAA
1 AATA-AAATAAA
26454754 ATTTAAAATT
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
14 1 0.02
15 22 0.35
16 13 0.21
17 26 0.42
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (16 bp):
AATAAAATAAATAAGA
Found at i:26454718 original size:12 final size:11
Alignment explanation
Indices: 26454674--26454754 Score: 64
Period size: 12 Copynumber: 7.5 Consensus size: 11
26454664 ATAAAATATT
26454674 TAAAAATAAAA
1 TAAAAATAAAA
* *
26454685 -CAAAATGAAA
1 TAAAAATAAAA
*
26454695 T-AAAATACAA
1 TAAAAATAAAA
26454705 TAAGAAATAAAA
1 TAA-AAATAAAA
26454717 TAAATAA-ATAAA
1 TAAA-AATA-AAA
26454729 TAAAAAT--AA
1 TAAAAATAAAA
26454738 TAAAAATAGAAA
1 TAAAAATA-AAA
26454750 TAAAA
1 TAAAA
26454755 TTTAAAATTA
Statistics
Matches: 56, Mismatches: 5, Indels: 17
0.72 0.06 0.22
Matches are distributed among these distances:
9 9 0.16
10 16 0.29
11 5 0.09
12 26 0.46
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:26454726 original size:30 final size:28
Alignment explanation
Indices: 26454655--26454755 Score: 82
Period size: 30 Copynumber: 3.5 Consensus size: 28
26454645 AGAGAAATTT
**
26454655 ATAAATATAATAAAATATTTAAAAATAAA
1 ATAAATA-AATAAAATAAATAAAAATAAA
*
26454684 ACAAAATGAAATAAAATACAATAAGAAATAAA
1 A-TAAAT-AAATAAAATA-AATAA-AAATAAA
*
26454716 ATAAATAAAT-AAATAAA-AATAATAAA
1 ATAAATAAATAAAATAAATAAAAATAAA
* *
26454742 A-ATAGAAATAAAAT
1 ATAAATAAATAAAAT
26454756 TTAAAATTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
25 6 0.10
26 11 0.18
27 2 0.03
28 2 0.03
29 6 0.10
30 17 0.28
31 8 0.13
32 8 0.13
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (28 bp):
ATAAATAAATAAAATAAATAAAAATAAA
Found at i:26461217 original size:15 final size:15
Alignment explanation
Indices: 26461197--26461226 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26461187 ATAATCCTAA
26461197 TAATTATCTTAATAT
1 TAATTATCTTAATAT
26461212 TAATTATCTTAATAT
1 TAATTATCTTAATAT
26461227 AAATAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (15 bp):
TAATTATCTTAATAT
Found at i:26461950 original size:271 final size:271
Alignment explanation
Indices: 26461461--26462002 Score: 1021
Period size: 271 Copynumber: 2.0 Consensus size: 271
26461451 TAAACACATG
*
26461461 ATTAATACATAAAAATATGTTATTCTAGAGTATTATCAGCAAGGCTCATATGAGCGACTTTGGTG
1 ATTAATACATAAAAATATGTTATTCTAGAGCATTATCAGCAAGGCTCATATGAGCGACTTTGGTG
**
26461526 TGCGTTTTCAGAGTGTCAGAGGTAGTTTTGCTCATCAATGAGTGTAAAAGGGATGGCCGAAGGTA
66 TGCGTTTTCAGAGTGTCAGAGGTAGTTTTGCTCATCAATGAGCATAAAAGGGATGGCCGAAGGTA
*
26461591 TTCAACTATCGTCGGATTATTGATTTCGGTCGATCAACAATAGTGCTCGGGGTAGTGACAATGTG
131 TTCAACTATCGTCGGATTATTGATTTCGGTCGAGCAACAATAGTGCTCGGGGTAGTGACAATGTG
*
26461656 GTGGTTGGTGGTTACTTTTTGGTTTGGACACAAGATCGGGGCTTCGTTTGACGATGATAGAAAGG
196 GTGGTTGGTGGTTACTATTTGGTTTGGACACAAGATCGGGGCTTCGTTTGACGATGATAGAAAGG
26461721 GTTTTGGAGGC
261 GTTTTGGAGGC
26461732 ATTAATACATAAAAATATGTTATTCTAGAGCATTATCAGCAAGGCTCATATGAGCGACTTTGGTG
1 ATTAATACATAAAAATATGTTATTCTAGAGCATTATCAGCAAGGCTCATATGAGCGACTTTGGTG
*
26461797 TGCGTTTTCAGAGTGTCGGAGGTAGTTTTGCTCATCAATGAGCATAAAAGGGATGGCCGAAGGTA
66 TGCGTTTTCAGAGTGTCAGAGGTAGTTTTGCTCATCAATGAGCATAAAAGGGATGGCCGAAGGTA
*
26461862 TTCAACTATCGTCGGATTATTGATTTCGGTCGAGCAACAATGGTGCTCGGGGTAGTGACAATGTG
131 TTCAACTATCGTCGGATTATTGATTTCGGTCGAGCAACAATAGTGCTCGGGGTAGTGACAATGTG
26461927 GTGGTTGGTGGTTACTATTTGGTTTGGACACAAGATCGGGGCTTCGTTTGACGATGATAGAAAGG
196 GTGGTTGGTGGTTACTATTTGGTTTGGACACAAGATCGGGGCTTCGTTTGACGATGATAGAAAGG
26461992 GTTTTGGAGGC
261 GTTTTGGAGGC
26462003 GGCAATGTTC
Statistics
Matches: 264, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
271 264 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (271 bp):
ATTAATACATAAAAATATGTTATTCTAGAGCATTATCAGCAAGGCTCATATGAGCGACTTTGGTG
TGCGTTTTCAGAGTGTCAGAGGTAGTTTTGCTCATCAATGAGCATAAAAGGGATGGCCGAAGGTA
TTCAACTATCGTCGGATTATTGATTTCGGTCGAGCAACAATAGTGCTCGGGGTAGTGACAATGTG
GTGGTTGGTGGTTACTATTTGGTTTGGACACAAGATCGGGGCTTCGTTTGACGATGATAGAAAGG
GTTTTGGAGGC
Found at i:26465527 original size:30 final size:30
Alignment explanation
Indices: 26465491--26465550 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
26465481 TAGACATGTA
26465491 AATAAACCTAAGCTACAGTAAAAACTAACT
1 AATAAACCTAAGCTACAGTAAAAACTAACT
26465521 AATAAACCTAAGCTACAGTAAAAACTAACT
1 AATAAACCTAAGCTACAGTAAAAACTAACT
26465551 TAACTAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.20, G:0.07, T:0.20
Consensus pattern (30 bp):
AATAAACCTAAGCTACAGTAAAAACTAACT
Found at i:26467431 original size:24 final size:24
Alignment explanation
Indices: 26467381--26467431 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
26467371 TTCAACCAAA
* *
26467381 TTATTTTTTTATTATTTTACTCAT
1 TTATTTATTTATTATTTTAATCAT
*
26467405 TTATTTATTTATT-TATTTAATCTT
1 TTATTTATTTATTAT-TTTAATCAT
26467429 TTA
1 TTA
26467432 ATAATTAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (24 bp):
TTATTTATTTATTATTTTAATCAT
Found at i:26469232 original size:10 final size:9
Alignment explanation
Indices: 26469203--26469228 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26469193 ATATAAATTA
26469203 TTTAAAAAT
1 TTTAAAAAT
26469212 TTTAAAAAT
1 TTTAAAAAT
26469221 TTTAAAAA
1 TTTAAAAA
26469229 ATTTGAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
TTTAAAAAT
Found at i:26469614 original size:16 final size:15
Alignment explanation
Indices: 26469583--26469611 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26469573 AAAATTGTAA
26469583 AAAACATTATAATTT
1 AAAACATTATAATTT
26469598 AAAA-ATTATAATTT
1 AAAACATTATAATTT
26469612 TTACAATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAACATTATAATTT
Found at i:26469801 original size:9 final size:9
Alignment explanation
Indices: 26469757--26469803 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
26469747 TTTTCTAAAC
26469757 AATTTTTACA
1 AATTTTTA-A
26469767 AATTTTTAA
1 AATTTTTAA
*
26469776 GAATTTTTAT
1 -AATTTTTAA
*
26469786 AACTTTTAA
1 AATTTTTAA
26469795 AATTTTTAA
1 AATTTTTAA
26469804 GTGTACATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
9 16 0.50
10 16 0.50
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (9 bp):
AATTTTTAA
Found at i:26470330 original size:24 final size:23
Alignment explanation
Indices: 26470303--26470352 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
26470293 GAAATAATGC
* *
26470303 AAAATTTAAATACCAACATAAGAA
1 AAAAATTAAATACCAAAATAA-AA
**
26470327 AAAAATTAGGTACCAAAATAAAA
1 AAAAATTAAATACCAAAATAAAA
26470350 AAA
1 AAA
26470353 TGTGTATAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.66, C:0.10, G:0.06, T:0.18
Consensus pattern (23 bp):
AAAAATTAAATACCAAAATAAAA
Found at i:26470752 original size:20 final size:20
Alignment explanation
Indices: 26470727--26470772 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
26470717 ATAAAAATTG
26470727 GTCAATATA-CTATGTCATTA
1 GTCAATATATC-ATGTCATTA
*
26470747 GTCAATTTATCATGTCATTA
1 GTCAATATATCATGTCATTA
*
26470767 ATCAAT
1 GTCAAT
26470773 CTGTTATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (20 bp):
GTCAATATATCATGTCATTA
Found at i:26471260 original size:11 final size:11
Alignment explanation
Indices: 26471244--26471268 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26471234 TTGAATTCCT
26471244 TCAATTTACCC
1 TCAATTTACCC
26471255 TCAATTTACCC
1 TCAATTTACCC
26471266 TCA
1 TCA
26471269 GAATTTCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (11 bp):
TCAATTTACCC
Found at i:26474330 original size:120 final size:120
Alignment explanation
Indices: 26474117--26474341 Score: 297
Period size: 120 Copynumber: 1.9 Consensus size: 120
26474107 TATGCATTTC
* * * * * ** *
26474117 AAATTTCAAAAGGATATTTAGCTATTTGGTTAAATGGTAAATCGAAATCCAACACGATTGGGCAT
1 AAATTTCAAAAGGATATTCAGCTATTCGGTTAAACGGAAAATCGAAACCCAACACGATAAGGCAC
* * * *
26474182 GATTTCTCGAATTTCTAAATACGAAATATTGTCTCATTTTAAGAAAACATGGATG
66 GATTTCTCAAACTTCCAAACACGAAATATTGTCTCATTTTAAGAAAACATGGATG
* * * *
26474237 AAATTTCAAAAGGATATTCAGTTATTCGGTTGAACGGAAAATCGAAACCCAGCACGGTAAGGCAC
1 AAATTTCAAAAGGATATTCAGCTATTCGGTTAAACGGAAAATCGAAACCCAACACGATAAGGCAC
*
26474302 GATTTCTCAAACTTCCAAACACGAAATATTGTCTTATTTT
66 GATTTCTCAAACTTCCAAACACGAAATATTGTCTCATTTT
26474342 GAAAAACTTT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
120 88 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (120 bp):
AAATTTCAAAAGGATATTCAGCTATTCGGTTAAACGGAAAATCGAAACCCAACACGATAAGGCAC
GATTTCTCAAACTTCCAAACACGAAATATTGTCTCATTTTAAGAAAACATGGATG
Found at i:26474862 original size:14 final size:15
Alignment explanation
Indices: 26474829--26474871 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
26474819 AGTGCATGGA
*
26474829 AAAAATAATGTATGT
1 AAAAATAATATATGT
26474844 AAAAATAATATAT-T
1 AAAAATAATATATGT
*
26474858 CAAAATAATATATG
1 AAAAATAATATATG
26474872 CATATAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (15 bp):
AAAAATAATATATGT
Found at i:26476952 original size:16 final size:15
Alignment explanation
Indices: 26476933--26476970 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
26476923 TAAAAATCCT
26476933 AAAATAAATTATTTTA
1 AAAATAAATTA-TTTA
26476949 AAAAT-AATTATTTA
1 AAAATAAATTATTTA
26476963 AAAA-AAAT
1 AAAATAAAT
26476971 CACATTTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 11 0.52
15 5 0.24
16 5 0.24
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAATAAATTATTTA
Found at i:26477500 original size:19 final size:20
Alignment explanation
Indices: 26477461--26477500 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
26477451 TCATACCAAT
*
26477461 AAATAATATAAAAATATTAA
1 AAATAATATAAAAATAGTAA
*
26477481 AAAT-ATATAAAAATCGTAA
1 AAATAATATAAAAATAGTAA
26477500 A
1 A
26477501 TATTCAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (20 bp):
AAATAATATAAAAATAGTAA
Found at i:26478556 original size:19 final size:19
Alignment explanation
Indices: 26478515--26478598 Score: 71
Period size: 19 Copynumber: 4.1 Consensus size: 19
26478505 ATTACAATTT
*
26478515 TTATTAATTTTTTTATTATAAA
1 TTATTAA-TATTTT-TTA-AAA
26478537 TTATTAATATTTTTTAAAA
1 TTATTAATATTTTTTAAAA
*
26478556 TTATTACATATTTATTTTATAA
1 TTATTA-ATA-TT-TTTTAAAA
*
26478578 -TATCTAATATTTTTTATAA
1 TTAT-TAATATTTTTTAAAA
26478597 TT
1 TT
26478599 TAAAAAAACA
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
19 17 0.31
20 9 0.16
21 13 0.24
22 16 0.29
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
TTATTAATATTTTTTAAAA
Found at i:26478561 original size:22 final size:21
Alignment explanation
Indices: 26478510--26478561 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
26478500 TTTAGATTAC
* *
26478510 AATTTTTATTAATTTTTTTAT
1 AATTATTATTAATTTTTTTAA
* *
26478531 TATAAATTATTAATATTTTTTAA
1 AAT-TATTATTAAT-TTTTTTAA
26478554 AATTATTA
1 AATTATTA
26478562 CATATTTATT
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
21 2 0.09
22 12 0.52
23 9 0.39
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
AATTATTATTAATTTTTTTAA
Found at i:26481885 original size:26 final size:26
Alignment explanation
Indices: 26481849--26481958 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
26481839 TGATACAAAT
26481849 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26481875 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
26481901 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
26481927 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26481953 TGATAA
1 TGATAA
26481959 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:26483473 original size:26 final size:26
Alignment explanation
Indices: 26483443--26483495 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26483433 TTTATAGTTT
26483443 TACCCCTAGGAGATAAATT-ACTGAAA
1 TACCCCTAGG-GATAAATTGACTGAAA
* * *
26483469 TACCCTTAGGGTTAAATTGACTTAAA
1 TACCCCTAGGGATAAATTGACTGAAA
26483495 T
1 T
26483496 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACTGAAA
Found at i:26486591 original size:101 final size:101
Alignment explanation
Indices: 26486391--26486623 Score: 288
Period size: 101 Copynumber: 2.3 Consensus size: 101
26486381 GTTGTGAGAA
* * **** ** * *
26486391 CACATGTGCAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTTTTAGATCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCA-ATCACGTGTGTAGTA
* * * *
26486456 CTAAGTGTAGGCTACTACTTGTACCAGATTGTTAGGT
65 CTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGT
*
26486493 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCAATCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCAATCACGTGTGTAGTAC
26486558 TAAGTGCAAGCTACTACGTGTATCC-GATGGTTAGGT
66 TAAGTGCAAGCTACTACGTGTA-CCAGATGGTTAGGT
* *
26486594 CACGTGTGTAGTACTAAGTGTAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
26486624 CATGTACCAA
Statistics
Matches: 112, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
101 72 0.64
102 40 0.36
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (101 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCAATCACGTGTGTAGTAC
TAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGT
Found at i:26486630 original size:101 final size:101
Alignment explanation
Indices: 26486441--26486684 Score: 285
Period size: 101 Copynumber: 2.4 Consensus size: 101
26486431 ACGGTTTTAG
* * * * *
26486441 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACTTGTACCAGATTGTTAGGTCGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTA
**
26486506 CTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCA
66 CTAAGTGCAGGCTACTACATGTACCCGATAGCTTCA
*
26486542 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCC-GATGGTTAGGTCACGTGTGTAGT
1 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTA-CCAGATGGTTAGGTCACATGTGTAGT
* ** * **
26486606 ACTAAGTGTAGGCTACTACATGTACCAAATTG-TTTG
65 ACTAAGTGCAGGCTACTACATGTACCCGATAGCTTCA
* * * * * *
26486642 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGA
26486685 GAGCTTCGGT
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
99 2 0.02
100 36 0.30
101 81 0.67
102 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (101 bp):
ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTA
CTAAGTGCAGGCTACTACATGTACCCGATAGCTTCA
Found at i:26486681 original size:50 final size:50
Alignment explanation
Indices: 26486391--26486684 Score: 281
Period size: 50 Copynumber: 5.8 Consensus size: 50
26486381 GTTGTGAGAA
* * ** * *
26486391 CACATGTGCAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTT-TTAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGT
* *
26486443 CACGTGTGTAGTACTAAGTGTAGGCTACTACT-TGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTA-TGTGTACCAGATTGTTAGGT
* * * *
26486493 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TT-AGGT
* * * *
26486544 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCC-GATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATTGTTAGGT
* * ** * *
26486594 CACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAAATTGTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
26486644 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
26486685 GAGCTTCGGT
Statistics
Matches: 201, Mismatches: 33, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
49 7 0.03
50 123 0.61
51 39 0.19
52 31 0.15
53 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:26487566 original size:180 final size:180
Alignment explanation
Indices: 26487264--26487589 Score: 481
Period size: 180 Copynumber: 1.8 Consensus size: 180
26487254 TCTGAGAGTT
* * ** * *
26487264 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGAAACTATTGGACAGTGAAATAGGGGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAAGTCGAAACTATCAGACAATGAAATAGGGATA
* * * *
26487329 TATTTAATGAATAAACTGTACTAATTGGCTAAACTAAAAATTCTAAAAAATTTATGGTAAGAATA
66 TATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAACTATAAAAAATTTATGGTAAGAAGA
* *
26487394 TATGTGAGTCTAGTTTATGGTAAAATTAGTTGTTCTCAATTTGGAGTCCC
131 TATATGAGTATAGTTTATGGTAAAATTAGTTGTTCTCAATTTGGAGTCCC
* *
26487444 GTACCATGAAATAAATAATTTTTAGTGAAGAGAAGTCGGAACTGTCAGACAATGAAATAGGGATA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAAGTCGAAACTATCAGACAATGAAATAGGGATA
* * * * *
26487509 TCTTTAATGAATAGACTGTACTAATTGGCTAAACCAAAAACTATGAAAATTTTATGGTAATAAGA
66 TATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAACTATAAAAAATTTATGGTAAGAAGA
26487574 TATATGAGTATAGTTT
131 TATATGAGTATAGTTT
26487590 TATAAAAAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
180 127 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (180 bp):
GTACCATGAAATAAATAATTTTTAGTGAAGAGAAGTCGAAACTATCAGACAATGAAATAGGGATA
TATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAACTATAAAAAATTTATGGTAAGAAGA
TATATGAGTATAGTTTATGGTAAAATTAGTTGTTCTCAATTTGGAGTCCC
Found at i:26489750 original size:5 final size:5
Alignment explanation
Indices: 26489740--26489801 Score: 124
Period size: 5 Copynumber: 12.4 Consensus size: 5
26489730 ATAAGAATAT
26489740 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
26489790 TATTA TATTA TA
1 TATTA TATTA TA
26489802 ACTAAACTAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:26493920 original size:41 final size:41
Alignment explanation
Indices: 26493869--26494012 Score: 227
Period size: 41 Copynumber: 3.5 Consensus size: 41
26493859 ATCTTAAATT
*
26493869 GCACACTAAGTGCCATATATAATCGAAGCTATCTCGATCTC
1 GCACACTAAGTGCCATATATAGTCGAAGCTATCTCGATCTC
* *
26493910 GCACACTAAGTGCCATATATAGTCGAATCTATCTTGATCTC
1 GCACACTAAGTGCCATATATAGTCGAAGCTATCTCGATCTC
* *
26493951 GCACACTAAGTGCCATATATAGTCGAAGCTATGTCGA-ATC
1 GCACACTAAGTGCCATATATAGTCGAAGCTATCTCGATCTC
*
26493991 GCACACTAAGTGCCACATATAG
1 GCACACTAAGTGCCATATATAG
26494013 CTGATTTGTC
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 23 0.24
41 72 0.76
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (41 bp):
GCACACTAAGTGCCATATATAGTCGAAGCTATCTCGATCTC
Found at i:26497728 original size:15 final size:15
Alignment explanation
Indices: 26497708--26497739 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26497698 AAAATGACAA
26497708 AATATATAACCATTG
1 AATATATAACCATTG
26497723 AATATATAACCATTG
1 AATATATAACCATTG
26497738 AA
1 AA
26497740 GGCTAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (15 bp):
AATATATAACCATTG
Found at i:26512599 original size:105 final size:105
Alignment explanation
Indices: 26512417--26512628 Score: 397
Period size: 105 Copynumber: 2.0 Consensus size: 105
26512407 ACGCCACGTT
26512417 GTTAAACTACTATTAGTCTGCAAATAACAACTGCCATATTGGCTGTGGACACATAGCAAGTCCTT
1 GTTAAACTACTATTAGTCTGCAAATAACAACTGCCATATTGGCTGTGGACACATAGCAAGTCCTT
*
26512482 GCGGTTGGAATCTACCTTTGACTGTGGGTTCATAGTAAAA
66 GCGGTTGGAATCTACCTTTGACTGTGGGTTCATAGCAAAA
*
26512522 GTTAAACTACTATTAGTTTGCAAATAACAACTGCCATATTGGCTGTGGACACATAGCAAGTCCTT
1 GTTAAACTACTATTAGTCTGCAAATAACAACTGCCATATTGGCTGTGGACACATAGCAAGTCCTT
*
26512587 GCGGTTGGAATCTACTTTTGACTGTGGGTTCATAGCAAAA
66 GCGGTTGGAATCTACCTTTGACTGTGGGTTCATAGCAAAA
26512627 GT
1 GT
26512629 CTTGCAGATA
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (105 bp):
GTTAAACTACTATTAGTCTGCAAATAACAACTGCCATATTGGCTGTGGACACATAGCAAGTCCTT
GCGGTTGGAATCTACCTTTGACTGTGGGTTCATAGCAAAA
Found at i:26515040 original size:11 final size:10
Alignment explanation
Indices: 26515017--26515064 Score: 51
Period size: 11 Copynumber: 4.5 Consensus size: 10
26515007 CGTTCTATAC
*
26515017 TCTTTCTTCT
1 TCTTTCTTTT
26515027 TCTTTCCTTTT
1 TCTTT-CTTTT
26515038 TCTTTCTCTTT
1 TCTTTCT-TTT
*
26515049 TTTTTCTTTCT
1 TCTTTCTTT-T
26515060 TCTTT
1 TCTTT
26515065 TTACTCCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
10 9 0.28
11 23 0.72
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (10 bp):
TCTTTCTTTT
Found at i:26515044 original size:15 final size:14
Alignment explanation
Indices: 26515017--26515066 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
26515007 CGTTCTATAC
26515017 TCTTTCTTC-TTCTT
1 TCTTT-TTCTTTCTT
26515031 TCCTTTTTCTTTCTCT
1 T-CTTTTTCTTTCT-T
*
26515047 TTTTTTTCTTTC-T
1 TCTTTTTCTTTCTT
26515060 TCTTTTT
1 TCTTTTT
26515067 ACTCCTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
13 7 0.23
14 4 0.13
15 18 0.58
16 2 0.06
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
TCTTTTTCTTTCTT
Found at i:26518534 original size:43 final size:43
Alignment explanation
Indices: 26518473--26518756 Score: 507
Period size: 43 Copynumber: 6.6 Consensus size: 43
26518463 CCGGCATTAC
* * *
26518473 GCCTGCTAGGCACGAAGGCCCGAATACACATAACTGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
26518516 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
26518559 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
26518602 GCCTGCT-GGCCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGG-CACGAAGGCCCGAATACACATCACCGGCACGAA
26518645 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
26518688 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
26518731 GCCTGCTAGGCACGAAGGCTCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
26518757 TAATACCAGC
Statistics
Matches: 233, Mismatches: 6, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
42 2 0.01
43 229 0.98
44 2 0.01
ACGTcount: A:0.30, C:0.33, G:0.26, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:26518797 original size:38 final size:38
Alignment explanation
Indices: 26518754--26518856 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
26518744 GAAGGCTCGA
** * *
26518754 ATATAATACCAGCATTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
26518792 ATATAATACCAGTACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
**
26518830 ATATTTTACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
26518857 TCTTTAAGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:26523034 original size:27 final size:26
Alignment explanation
Indices: 26522999--26523110 Score: 98
Period size: 27 Copynumber: 4.2 Consensus size: 26
26522989 AGCATGGCTT
* *
26522999 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
26523025 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
* * *
26523053 CCAGAATAGATATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
** * *
26523080 CCAGATTAGATAATTGTGTCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
26523107 CCAG
1 CCAG
26523111 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:26523064 original size:54 final size:54
Alignment explanation
Indices: 26522999--26523110 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 54
26522989 AGCATGGCTT
* * *
26522999 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * * *
26523053 CCAGAATAGATATATGTGGCAAAGCCACCAGATTAGATAATTGTGTCATAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGATCAGATAATCGTGGCAGAGCCA
26523107 CCAG
1 CCAG
26523111 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
54 32 0.67
55 16 0.33
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAAAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:26537744 original size:16 final size:17
Alignment explanation
Indices: 26537719--26537757 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
26537709 CAATCTTTAT
*
26537719 AAAATTTTTG-TTTCCG
1 AAAATCTTTGTTTTCCG
26537735 AAAATCTTTGTTTTCCG
1 AAAATCTTTGTTTTCCG
26537752 AAAATC
1 AAAATC
26537758 ATTGCGGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (17 bp):
AAAATCTTTGTTTTCCG
Found at i:26538377 original size:27 final size:27
Alignment explanation
Indices: 26538346--26538449 Score: 131
Period size: 27 Copynumber: 3.8 Consensus size: 27
26538336 CTGCCAGAAC
* *
26538346 AGATAATGTGACAGAGTCACCAGATAT
1 AGATAATGTGGCAGAGCCACCAGATAT
*
26538373 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAT
26538400 AGATATATGTGGCAGAGCCACCAGAT-T
1 AGATA-ATGTGGCAGAGCCACCAGATAT
*
26538427 AGATAATTGTGGCATAGCCACCA
1 AGATAA-TGTGGCAGAGCCACCA
26538450 AGACGCTTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 50 0.74
28 17 0.25
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAT
Found at i:26538430 original size:54 final size:54
Alignment explanation
Indices: 26538339--26538449 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 54
26538329 AGCATGACTG
*
26538339 CCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATATAGATAATCGTGGCAGAGCCA
* * *
26538393 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATATAGATAATCGTGGCAGAGCCA
26538447 CCA
1 CCA
26538450 AGACGCTTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATATAGATAATCGTGGCAGAGCCA
Found at i:26549920 original size:27 final size:27
Alignment explanation
Indices: 26549790--26549920 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
26549780 ATTACCAAAG
*
26549790 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
26549817 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
26549844 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
26549871 TACCATTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
26549898 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
26549921 AAAATACCAT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:26549928 original size:27 final size:27
Alignment explanation
Indices: 26549898--26550144 Score: 239
Period size: 27 Copynumber: 9.2 Consensus size: 27
26549888 ATTACTGTTT
** *
26549898 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
26549925 TACCATCGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
26549952 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
26549979 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * *
26550005 TACCCTTGGTTTGTAAAATTACCGAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
26550032 CACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
26550059 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * *
26550086 TACCACT-GGTTTGTGAAATTATCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
*
26550113 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
26550140 TACCC
1 TACCC
26550145 CTAATTTACA
Statistics
Matches: 180, Mismatches: 35, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
26 26 0.14
27 153 0.85
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:26549930 original size:54 final size:54
Alignment explanation
Indices: 26549790--26549920 Score: 217
Period size: 54 Copynumber: 2.4 Consensus size: 54
26549780 ATTACCAAAG
*
26549790 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCATTGATTTACAGAATTACCGTTT
* *
26549844 TACCCTCAATTTATAGAATTACTGTTTTACCATTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCATTGATTTACAGAATTACCGTTT
* *
26549898 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
26549921 AAAATACCAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCATTGATTTACAGAATTACCGTTT
Found at i:26549938 original size:54 final size:54
Alignment explanation
Indices: 26549824--26549947 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 54
26549814 TTTTACCCTT
* * **** *
26549824 GATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACTGTTTTACCATT
1 GATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTAAAATACCATC
* *
26549878 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCATC
1 GATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTAAAATACCATC
* *
26549932 GGTTTACAAAATTACC
1 GATTTACAGAATTACC
26549948 AAAATACCCT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (54 bp):
GATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTAAAATACCATC
Found at i:26549945 original size:81 final size:81
Alignment explanation
Indices: 26549797--26549946 Score: 183
Period size: 81 Copynumber: 1.9 Consensus size: 81
26549787 AAGTACCCTC
* * * **** * * *
26549797 GATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAA
1 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCAAAATACCATCAATTTACAAAA
26549862 TTACTGTTTTACCATT
66 TTACTGTTTTACCATT
* **
26549878 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCATCGGTTTACAAAA
1 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCAAAATACCATCAATTTACAAAA
26549943 TTAC
66 TTAC
26549947 CAAAATACCC
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 56 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (81 bp):
GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCAAAATACCATCAATTTACAAAA
TTACTGTTTTACCATT
Found at i:26549983 original size:81 final size:80
Alignment explanation
Indices: 26549898--26550170 Score: 273
Period size: 81 Copynumber: 3.4 Consensus size: 80
26549888 ATTACTGTTT
** * * *
26549898 TACCCTCGATTTACAAAATTACTAAAATACCATCGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCC-CGATTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAATT
*
26549963 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** * * * *
26549979 TA-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAACACCCTCAATT
1 TACCCCGA-TTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAATT
26550043 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** * * *
26550059 TACCCCTAGTTTGTAAAATTACCAAAATACCA-CTGGTTTGTGAAATTATCGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACTAAAATACCATC-GGTTTGTAAAATTACCGAAATACCCTCAAT
26550123 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* *
26550140 TACCCCTAATTTACAAAGTTAC-AGAAATACC
1 TACCCC-GATTTACAAAATTACTA-AAATACC
26550171 CTTGACTTTC
Statistics
Matches: 161, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
79 2 0.01
80 64 0.40
81 94 0.58
82 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (80 bp):
TACCCCGATTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:26550063 original size:54 final size:53
Alignment explanation
Indices: 26549939--26550185 Score: 228
Period size: 54 Copynumber: 4.6 Consensus size: 53
26549929 ATCGGTTTAC
* ** * *
26549939 AAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATACCCTAGTCTGT
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTAATTTGT
* * * * *
26549992 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAACACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCT-AATTTGT
* **
26550046 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCTTGA-TTTGTAAAATTACCAAAATACC-CTAATTTGT
* * * ** **
26550100 GAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATA-CCCTAATTTGT
* *
26550154 AAAGTTA-CAGAAATACCCTTGACTTTCTAAAA
1 AAAATTACCA-AAATACCCTTGA-TTTGTAAAA
26550186 ATTATGGAAA
Statistics
Matches: 154, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
53 39 0.25
54 102 0.66
55 13 0.08
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTAATTTGT
Found at i:26550318 original size:27 final size:27
Alignment explanation
Indices: 26550288--26550376 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
26550278 TACCCCTATT
*
26550288 AGGTAAAAAGATCGTAAAGCCCCTGTA
1 AGGTAAAAAGACCGTAAAGCCCCTGTA
*
26550315 AGGTAAAGAGACCGTAAAGCCCCTGTA
1 AGGTAAAAAGACCGTAAAGCCCCTGTA
* **
26550342 GGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAAAGACCGTAA-AGCCCCTGTA
*
26550369 TGGTAAAA
1 AGGTAAAA
26550377 TAACGAATGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (27 bp):
AGGTAAAAAGACCGTAAAGCCCCTGTA
Found at i:26551209 original size:26 final size:26
Alignment explanation
Indices: 26551180--26551289 Score: 129
Period size: 26 Copynumber: 4.3 Consensus size: 26
26551170 GAGGAAGTGC
26551180 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
** *
26551206 AAAATAGCTTATGCCCAAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
26551232 AAAAGGG-TTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
26551257 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
26551280 AAAAGAGGCT
1 AAAAG-GGCT
26551290 AGGCCTCCAG
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
23 5 0.07
24 7 0.10
25 29 0.41
26 30 0.42
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:26551245 original size:25 final size:25
Alignment explanation
Indices: 26551180--26551284 Score: 108
Period size: 25 Copynumber: 4.2 Consensus size: 25
26551170 GAGGAAGTGC
26551180 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGG-TTATGCCCCAGTTTATTG
* * *
26551206 AAAATAGCTTATGCCCAAGTTTATTG
1 AAAA-GGGTTATGCCCCAGTTTATTG
* **
26551232 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGTTATGCCCCAGTTTATTG
26551257 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGG-TTATGCCCCAGTTTATTG
26551280 AAAAG
1 AAAAG
26551285 AGGCTAGGCC
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
23 5 0.08
24 3 0.05
25 30 0.45
26 27 0.41
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (25 bp):
AAAAGGGTTATGCCCCAGTTTATTG
Found at i:26551260 original size:51 final size:49
Alignment explanation
Indices: 26551180--26551289 Score: 123
Period size: 51 Copynumber: 2.2 Consensus size: 49
26551170 GAGGAAGTGC
** *
26551180 AAAAGGGCTTATGCCCCAGTTTATTGAAAATAGCTTATGCCCAAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGAGCTT-TGCCCAAG-TTATT
* * *
26551231 GAAAAGGG-TTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTTACCGAAAAGAGCTTTGCCCAAGTTATT
26551280 AAAAGAGGCT
1 AAAAG-GGCT
26551290 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
48 5 0.10
49 7 0.14
50 8 0.16
51 23 0.46
52 7 0.14
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGAGCTTTGCCCAAGTTATT
Found at i:26551530 original size:31 final size:31
Alignment explanation
Indices: 26551495--26551565 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
26551485 CGTTTACAGT
*
26551495 AAAGGCTTCGGCCCAATGATATGATTTATTA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* *
26551526 AAAGGCTGCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
26551557 AAAGGCTTC
1 AAAGGCTTC
26551566 AGCCGAGTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:26554603 original size:19 final size:18
Alignment explanation
Indices: 26554571--26554607 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
26554561 TTACACGGCT
26554571 TGGAGACACAGGCGTGTC
1 TGGAGACACAGGCGTGTC
*
26554589 TGGAGCACACGGGCGTGTC
1 TGGAG-ACACAGGCGTGTC
26554608 CCTGTGTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.19, C:0.24, G:0.41, T:0.16
Consensus pattern (18 bp):
TGGAGACACAGGCGTGTC
Found at i:26560003 original size:35 final size:35
Alignment explanation
Indices: 26559964--26560128 Score: 181
Period size: 35 Copynumber: 4.7 Consensus size: 35
26559954 TCCATGGTAA
*
26559964 AGTTGTGAAACATAGGTATGGTATCATCCATATTG
1 AGTTGTGAAACATAGGTATGGTATTATCCATATTG
* * *
26559999 AGTTGTGAAACATAGGTATGCTATTAACCATACTG
1 AGTTGTGAAACATAGGTATGGTATTATCCATATTG
* *
26560034 AGTTGTGCAACGTAGGTATGGTATTATCCATATTG
1 AGTTGTGAAACATAGGTATGGTATTATCCATATTG
* * ***
26560069 AGTTAAT-AAACGTAGGTATAACATT-TCCCATATTG
1 AGTT-GTGAAACATAGGTATGGTATTAT-CCATATTG
* *
26560104 AGTTGTAAAATATAGGTATGGTATT
1 AGTTGTGAAACATAGGTATGGTATT
26560129 TCAATGAGAA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
34 2 0.02
35 104 0.97
36 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (35 bp):
AGTTGTGAAACATAGGTATGGTATTATCCATATTG
Found at i:26562237 original size:13 final size:13
Alignment explanation
Indices: 26562219--26562249 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
26562209 AAGAAGAGGT
26562219 AAAGAGGTATACA
1 AAAGAGGTATACA
26562232 AAAGAGGTATACA
1 AAAGAGGTATACA
26562245 AAAGA
1 AAAGA
26562250 TGATTCTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.58, C:0.06, G:0.23, T:0.13
Consensus pattern (13 bp):
AAAGAGGTATACA
Found at i:26563806 original size:92 final size:92
Alignment explanation
Indices: 26563649--26563832 Score: 332
Period size: 92 Copynumber: 2.0 Consensus size: 92
26563639 GGTTTAACAA
*
26563649 ATGCCCCTGCGGCATTTATGGATTTAATGAATTGGATTTTTCATCCTTATTTGGATAGATTTGTG
1 ATGCCCCTGCGGCATTTATGGATTTAATGAATTGGATTTTTCAGCCTTATTTGGATAGATTTGTG
26563714 GTGGTATTTATTAATGACATATTGGTC
66 GTGGTATTTATTAATGACATATTGGTC
* *
26563741 ATGCCCCTGCTGTATTTATGGATTTAATGAATTGGATTTTTCAGCCTTATTTGGATAGATTTGTG
1 ATGCCCCTGCGGCATTTATGGATTTAATGAATTGGATTTTTCAGCCTTATTTGGATAGATTTGTG
*
26563806 GTGGTATTTATTGATGACATATTGGTC
66 GTGGTATTTATTAATGACATATTGGTC
26563833 TATTCAAAGA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 88 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (92 bp):
ATGCCCCTGCGGCATTTATGGATTTAATGAATTGGATTTTTCAGCCTTATTTGGATAGATTTGTG
GTGGTATTTATTAATGACATATTGGTC
Found at i:26567563 original size:35 final size:36
Alignment explanation
Indices: 26567519--26567609 Score: 107
Period size: 35 Copynumber: 2.6 Consensus size: 36
26567509 GCAAAGTTGT
26567519 GAAATGTAGGTATGGTATTAT-CCATACTGAGCT-AA
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGCTGAA
* ** * *
26567554 GAAACGTAGGTATGACATTTCCCATACTGAGTTGTA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGCTGAA
26567590 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
26567610 AATGAGGAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
34 1 0.02
35 44 0.96
36 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (36 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGCTGAA
Found at i:26570150 original size:96 final size:93
Alignment explanation
Indices: 26569986--26570320 Score: 300
Period size: 96 Copynumber: 3.5 Consensus size: 93
26569976 GAGGGTGAAT
* * * ** ** *
26569986 TGTCGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATGTTGAGGCCGATGCCATGTCCC
1 TGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCACACAAATCAATGCCGATGCCATGTCCC
*
26570051 AGACATGGTCTGACACTAGCTCTCGTCTTAA
66 AGACATGGTCTTACACT-GCTCTC-TC-TAA
*
26570082 TGTCGATGCCATG-TCCTAGACATGGTCTTACACTAGCACACAAATCAATGCCGATGCCATGTCC
1 TGTCGATGCCATGTTCC-AAACATGGTCTTACACTAGCACACAAATCAATGCCGATGCCATGTCC
* *
26570146 CAGACATGGTCTTACACTGGCTCTCACAACA
65 CAGACATGGTCTTACACT-GCTCTCTCTA-A
* * * * * * *
26570177 TTGCCGATGCTATGTTCCAAACATGGTCTTACACTGGCTCTCATAA-CATTGCCGATGCCATGTT
1 -TGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCACACA-AATCAATGCCGATGCCATGTC
* *
26570241 CCAAACATGGTCTTACACTGGCTCTC-ATAA
64 CCAGACATGGTCTTACACT-GCTCTCTCTAA
* * * *
26570271 TGTGGTTGACTCCATG-TCCTAGACATGGTCTTACACTAGCACACATATCA
1 TGTCGATG---CCATGTTCC-AAACATGGTCTTACACTAGCACACAAATCA
26570321 CCCAAATGTC
Statistics
Matches: 196, Mismatches: 33, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
93 5 0.03
94 2 0.01
95 10 0.05
96 174 0.89
97 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (93 bp):
TGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCACACAAATCAATGCCGATGCCATGTCCC
AGACATGGTCTTACACTGCTCTCTCTAA
Found at i:26570307 original size:48 final size:48
Alignment explanation
Indices: 26569984--26570270 Score: 292
Period size: 48 Copynumber: 6.0 Consensus size: 48
26569974 AAGAGGGTGA
* * * ***
26569984 ATTGTCGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATGTTG
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-AAC
* * * * * * ***
26570033 A-GGCCGATGCCATGTCCCAGACATGGTCTGACACTAGCTCTCGTCTT
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAC
* * * * * *
26570080 AATGTCGATGCCATG-TCCTAGACATGGTCTTACACTAGCACACA-AATC
1 ATTGCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATAA-C
* * * *
26570128 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAAC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAC
*
26570176 ATTGCCGATGCTATGTTCCAAACATGGTCTTACACTGGCTCTCATAAC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAC
26570224 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAA
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAA
26570271 TGTGGTTGAC
Statistics
Matches: 201, Mismatches: 32, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
47 4 0.02
48 192 0.96
49 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAC
Found at i:26577219 original size:7 final size:7
Alignment explanation
Indices: 26577198--26577230 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
26577188 TTCCCTTTTC
26577198 TTTCTTT
1 TTTCTTT
26577205 TTAT-TTT
1 TT-TCTTT
26577212 TTTCTTT
1 TTTCTTT
26577219 TTTCTTT
1 TTTCTTT
26577226 TTTCT
1 TTTCT
26577231 CATTTGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 22 0.92
8 1 0.04
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTCTTT
Found at i:26577220 original size:15 final size:14
Alignment explanation
Indices: 26577193--26577230 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
26577183 CTTACTTCCC
26577193 TTTTCTTTCTTTTTA
1 TTTT-TTTCTTTTTA
26577208 TTTTTTTCTTTTT-
1 TTTTTTTCTTTTTA
26577221 TCTTTTTTCT
1 T-TTTTTTCT
26577231 CATTTGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.05
14 17 0.77
15 4 0.18
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTCTTTTTA
Found at i:26585629 original size:16 final size:15
Alignment explanation
Indices: 26585608--26585637 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26585598 TACCGAGGGT
26585608 TCATCACATAATGAGC
1 TCATCACAT-ATGAGC
26585624 TCATCACATATGAG
1 TCATCACATATGAG
26585638 TTTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (15 bp):
TCATCACATATGAGC
Found at i:26585819 original size:42 final size:42
Alignment explanation
Indices: 26585773--26585881 Score: 191
Period size: 42 Copynumber: 2.6 Consensus size: 42
26585763 TATCATACCA
26585773 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
26585815 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
26585857 ATGTCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
26585882 TGCATGGTCT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:26592848 original size:40 final size:40
Alignment explanation
Indices: 26592802--26592934 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
26592792 AGACTAAGAT
26592802 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26592842 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
26592882 CCGAAGGCATTTGCGCGAATTACTATAA-ACGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
*
26592922 CCAAAGGCATTTG
1 CCGAAGGCATTTG
26592935 AACGAGGAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
40 84 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:26592952 original size:80 final size:79
Alignment explanation
Indices: 26592802--26592967 Score: 183
Period size: 80 Copynumber: 2.1 Consensus size: 79
26592792 AGACTAAGAT
* * * * * ** *
26592802 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGCGCGAATTACTAAATACGGGCTAAGTCCCAAAGGCATTTGAACGAGTGACTA
*
26592867 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
*
26592882 CCGAAGGCATTTGCGCGAATTACTATAA-ACGGGCTATGTCCCAAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGCGCGAATTACTA-AATACGGGCTAAGTCCCAAAGGCATTTGAACGAGTGA-C
* *
26592945 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
26592961 CCGAAGG
1 CCGAAGG
26592968 TACGTGATTT
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
79 15 0.21
80 55 0.76
81 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGCGCGAATTACTAAATACGGGCTAAGTCCCAAAGGCATTTGAACGAGTGACTA
AATCCGGTTAAATC
Found at i:26600792 original size:40 final size:40
Alignment explanation
Indices: 26600696--26600960 Score: 369
Period size: 40 Copynumber: 6.7 Consensus size: 40
26600686 TTGAATGCTG
* * *
26600696 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
**
26600735 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26600775 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26600815 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26600855 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26600895 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
26600936 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26600961 AACGAGGAGC
Statistics
Matches: 209, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
39 19 0.09
40 180 0.86
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26600978 original size:120 final size:119
Alignment explanation
Indices: 26600748--26600993 Score: 370
Period size: 120 Copynumber: 2.1 Consensus size: 119
26600738 GGACTAAGAT
*
26600748 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
* ** * *
26600813 AATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
66 AATCCAGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATC
26600868 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
* * *
26600933 TAA-CCAGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATT
66 -AATCCAGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATC
26600987 CCGAAGG
1 CCGAAGG
26600994 TACGTGATTT
Statistics
Matches: 115, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
119 15 0.13
120 98 0.85
121 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (119 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
AATCCAGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATC
Found at i:26604861 original size:42 final size:42
Alignment explanation
Indices: 26604748--26604913 Score: 210
Period size: 42 Copynumber: 3.9 Consensus size: 42
26604738 AGTACCACTC
* **
26604748 CAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
* * * *
26604790 CGATGCCAATAGCCCAGCTATGGACTTACACGAAATCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATAT
*
26604833 CAATGCCATACCCCAGATATGGTCTTACACGAAATCTCATAAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-AT
*
26604876 -AATGCCATATCCCAGATGTGGTCTTACAC-ATAATCTCA
1 CAATGCCATATCCCAGATATGGTCTTACACGA-AATCTCA
26604914 ATAACCCTAA
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.01
42 70 0.65
43 37 0.34
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
Found at i:26609040 original size:66 final size:66
Alignment explanation
Indices: 26608930--26609060 Score: 185
Period size: 66 Copynumber: 2.0 Consensus size: 66
26608920 TGAAAACAGG
** *
26608930 GCCGAGAACACGCCCGTATGTCATGGTCGTGGGAAAACTAGAGGGGTTACTGACTTAGGTCACAC
1 GCCGAGAACACGCCCGTATACCATGGTCGTGGGAAAACTAGAGGGGTTACTAACTTAGGTCACAC
26608995 C
66 C
* *
26608996 GCCGAGAACACGCCCGTATACCATGG-C-TGCGAGAAAACTGGAGGGGTTACTAACTTGGGTCAC
1 GCCGAGAACACGCCCGTATACCATGGTCGTG-G-GAAAACTAGAGGGGTTACTAACTTAGGTCAC
26609059 AC
64 AC
26609061 GGCCAGCTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
64 2 0.03
65 2 0.03
66 54 0.93
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.18
Consensus pattern (66 bp):
GCCGAGAACACGCCCGTATACCATGGTCGTGGGAAAACTAGAGGGGTTACTAACTTAGGTCACAC
C
Found at i:26610187 original size:47 final size:47
Alignment explanation
Indices: 26610118--26610244 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 47
26610108 ACAATCGATA
* * * *
26610118 AGTACCTATACCATAGCCCGTAGCCAAATCAATGTAACTTATCCCAG
1 AGTACCTATACCATTGCCCGTAGCCAAATCAAGGCAACTCATCCCAG
* *
26610165 AGTACCTATACCATTGCCCGTAGCCAAATCAAGGCAACTCCTCTCAG
1 AGTACCTATACCATTGCCCGTAGCCAAATCAAGGCAACTCATCCCAG
* * * *
26610212 AATACATATACCA-TGGCTGTAGCCAAATCAAGG
1 AGTACCTATACCATTGCCCGTAGCCAAATCAAGG
26610245 TATTATTCAC
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
46 18 0.26
47 52 0.74
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (47 bp):
AGTACCTATACCATTGCCCGTAGCCAAATCAAGGCAACTCATCCCAG
Found at i:26614599 original size:40 final size:40
Alignment explanation
Indices: 26614529--26614671 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
26614519 AGCTCAAAGT
* *
26614529 CTGCGAAACTTTAAGCCCGGATATA-A-TACCAGCACTAAGC
1 CTGCGAGA-TTTAA-CCCGGATATACATTACCAGCACGAAGC
26614569 CTGCGAGATTTAACCCGGATATACATTACCAGCACGAAGC
1 CTGCGAGATTTAACCCGGATATACATTACCAGCACGAAGC
* *
26614609 CTGCGGGATTTGACCCGGATATACATTACCAGCACGAAGC
1 CTGCGAGATTTAACCCGGATATACATTACCAGCACGAAGC
* * * *
26614649 CTGTGGGATTTGACCTGGATATA
1 CTGCGAGATTTAACCCGGATATA
26614672 TATAATATAT
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
38 10 0.11
39 6 0.06
40 79 0.83
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (40 bp):
CTGCGAGATTTAACCCGGATATACATTACCAGCACGAAGC
Done.