Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 100 of 344
Found at i:33618668 original size:46 final size:44
Alignment explanation
Indices: 33618500--33618670 Score: 146
Period size: 46 Copynumber: 3.7 Consensus size: 44
33618490 CGCCCCTAAG
* * * * *
33618500 TGAACTCGGGGACTCAGCTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTC--GGACTCAACTCAACGAGTTCGGACATTTGCAT-CAT-AA
* * * *
33618548 TGAACTCTGACTCAACTCAACGAGTTCGGATGCCTAGTTACATC-TCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCATAA
*
33618595 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCTATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC-ATAA
*
33618640 GTGAACACGGACTCAACTCAACGAGTTCGGA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGA
33618671 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
45 2 0.02
46 47 0.47
47 29 0.29
48 8 0.08
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCATAA
Found at i:33622030 original size:27 final size:27
Alignment explanation
Indices: 33622000--33622077 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
33621990 CAATTTGATG
*
33622000 AAATGATTGTTTTTCCCCTATGTGGTA
1 AAATGATTGTTTTGCCCCTATGTGGTA
* **** **
33622027 AAATGACTAAAATGCCCCTACATGGTA
1 AAATGATTGTTTTGCCCCTATGTGGTA
*
33622054 AATTGATTGTTTTGCCCCTATGTG
1 AAATGATTGTTTTGCCCCTATGTG
33622078 AGGTATTTAT
Statistics
Matches: 35, Mismatches: 16, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCCTATGTGGTA
Found at i:33623315 original size:44 final size:44
Alignment explanation
Indices: 33623179--33623335 Score: 164
Period size: 43 Copynumber: 3.6 Consensus size: 44
33623169 AGCTTGTACA
* * * *
33623179 ATGCCAACGTCTCAGACGTGGTCTTACATGT-AATCA-AATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAA-ATCG
* *
33623222 ATGCCACTGTCCCA-A-ATAGAGTCTTACACG-AAATCATATA-CG
1 ATGCCAATGTCCCAGACAT-G-GTCTTACACGTAAATCATAAATCG
*
33623264 ATGCCAATGTCTCAGACATGGTCTTACACGTAAATCATAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAATCG
* *
33623308 ATGCCAATGTCCCAGACGTGGTCGTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
33623336 TGATGACACA
Statistics
Matches: 94, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 26 0.28
43 37 0.39
44 30 0.32
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAATCG
Found at i:33635886 original size:40 final size:40
Alignment explanation
Indices: 33635769--33636507 Score: 1206
Period size: 40 Copynumber: 18.6 Consensus size: 40
33635759 TCGAATGATG
* *
33635769 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * *
33635809 TCCGGACTAAGAT-CCAAAG-GCATTTGTGCAAGTTGATATA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAG-TGATATA
*
33635849 TCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33635889 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
33635929 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33635969 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
33636008 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
33636047 T-CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
33636086 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33636126 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
33636165 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33636205 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATCTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33636245 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33636285 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33636325 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
33636365 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33636405 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
33636445 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
33636485 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
33636508 ATCATGCTGG
Statistics
Matches: 665, Mismatches: 26, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
38 10 0.02
39 131 0.20
40 502 0.75
41 22 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:33640882 original size:47 final size:47
Alignment explanation
Indices: 33640801--33641345 Score: 788
Period size: 47 Copynumber: 11.6 Consensus size: 47
33640791 TAATTGAATA
*
33640801 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATG
* * *
33640849 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
33640896 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
33640943 AAAGTGAACACGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
33640990 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
33641037 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
33641084 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
33641131 AAAGTGAACACGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
33641178 AAAGTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
33641225 AAAGTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
33641272 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
**
33641319 AATGTGAA-AGTGTATAAATGTGATAAG
1 AATGTGAACA-TGTATATGTGTGATAAG
33641346 TCCCGAAGGG
Statistics
Matches: 450, Mismatches: 45, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 431 0.96
48 17 0.04
49 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:33641520 original size:37 final size:37
Alignment explanation
Indices: 33641464--33641543 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
33641454 CCGGGCTATA
* * *
33641464 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
33641501 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
33641538 AAGACT
1 AAGACT
33641544 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:33649382 original size:11 final size:11
Alignment explanation
Indices: 33649366--33649399 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
33649356 TAACGACACC
33649366 GCACGTTTAAG
1 GCACGTTTAAG
33649377 GCACGTTTAAG
1 GCACGTTTAAG
33649388 GCACGTTTAAG
1 GCACGTTTAAG
33649399 G
1 G
33649400 TACATGACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (11 bp):
GCACGTTTAAG
Found at i:33651748 original size:25 final size:25
Alignment explanation
Indices: 33651729--33651781 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
33651719 TGAGCTGAAG
33651729 ATCGGCATGCTCTCACGAGCTATAA
1 ATCGGCATGCTCTCACGAGCTATAA
* *
33651754 ATCGGTATGCTCTCACGATCTATAA
1 ATCGGCATGCTCTCACGAGCTATAA
33651779 ATC
1 ATC
33651782 AATAACCCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (25 bp):
ATCGGCATGCTCTCACGAGCTATAA
Found at i:33664210 original size:8 final size:8
Alignment explanation
Indices: 33664197--33664228 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
33664187 CTAGATCGGC
33664197 AAAAGCCG
1 AAAAGCCG
33664205 AAAAGCCG
1 AAAAGCCG
*
33664213 AAATGCCG
1 AAAAGCCG
33664221 AAAAGCCG
1 AAAAGCCG
33664229 GTATTTTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:33664499 original size:26 final size:25
Alignment explanation
Indices: 33664470--33664528 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
33664460 ATTTACTAAA
*
33664470 ATACCCCAAGTATAAAAATTACCATT
1 ATACCCCAAGT-GAAAAATTACCATT
* * *
33664496 ATACCCTTAGGTGCAAAATTACCATT
1 ATACCC-CAAGTGAAAAATTACCATT
33664522 ATACCCC
1 ATACCCC
33664529 TAGGGTTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.39, C:0.27, G:0.07, T:0.27
Consensus pattern (25 bp):
ATACCCCAAGTGAAAAATTACCATT
Found at i:33664696 original size:27 final size:28
Alignment explanation
Indices: 33664635--33664697 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
33664625 GGAAGAAACG
*
33664635 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTACCACAAATATCTGT
*
33664663 TTCTGGTGGCTCTACCA-TAATATCTGT
1 TTCTGGTGGCTCTACCACAAATATCTGT
33664690 ATT-TGGTG
1 -TTCTGGTG
33664698 ACTTTGTCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 14 0.44
28 18 0.56
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (28 bp):
TTCTGGTGGCTCTACCACAAATATCTGT
Found at i:33668412 original size:27 final size:27
Alignment explanation
Indices: 33668382--33668439 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
33668372 ACTAAAATAT
33668382 CCCTAAGTATG-AAAATTACCATTATAC
1 CCCTAAG-ATGCAAAATTACCATTATAC
*
33668409 CCCT-AGGTGCAAAATTACCATTATAC
1 CCCTAAGATGCAAAATTACCATTATAC
33668435 CCCTA
1 CCCTA
33668440 GGGTTAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 2 0.07
26 22 0.79
27 4 0.14
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.28
Consensus pattern (27 bp):
CCCTAAGATGCAAAATTACCATTATAC
Found at i:33668593 original size:27 final size:27
Alignment explanation
Indices: 33668548--33668627 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
33668538 GAAGTGTTCT
33668548 GGTGGCTCTGCCACAAATATCTGTTTCC
1 GGTGGCTCTGCCAC-AATATCTGTTTCC
* *
33668576 GGTGGCTCTGCCACAATATCTGTATCT
1 GGTGGCTCTGCCACAATATCTGTTTCC
* **
33668603 GGTGACTCTATCACAATATCTGTTT
1 GGTGGCTCTGCCACAATATCTGTTT
33668628 TGGCAGCCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 32 0.70
28 14 0.30
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATATCTGTTTCC
Found at i:33669627 original size:13 final size:13
Alignment explanation
Indices: 33669605--33669637 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
33669595 AAGGGTTTGT
33669605 TTAT-TAAACTAA
1 TTATCTAAACTAA
33669617 TTATCTAAACTAA
1 TTATCTAAACTAA
*
33669630 TTAACTAA
1 TTATCTAA
33669638 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:33672217 original size:33 final size:32
Alignment explanation
Indices: 33672166--33672229 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
33672156 ACGAAGTCAC
* *
33672166 CAGATACAGATATTGTGGCTAGGCCACCAAAA
1 CAGATACAGATATTGTGGCGAAGCCACCAAAA
* *
33672198 CAGATATATATATATGTGGCGAAGCCACCAAA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAAA
33672230 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAAAA
Found at i:33672978 original size:27 final size:27
Alignment explanation
Indices: 33672948--33673147 Score: 199
Period size: 27 Copynumber: 7.4 Consensus size: 27
33672938 TGGGCAAAAT
* * *
33672948 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
33672975 GGTAATTCTACACTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
33673002 GGT-ATTCCTACCCTACAAGGGTATTTC
1 GGTAATT-CTACCCTACAAGGGTATTTC
* * * *
33673029 GGTAATTCTATCCTAGAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33673056 GATAATTCTACCCTAC-AGGCGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
** * * *
33673083 AATAATTCTACCGTACAGGGGAATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33673110 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
33673137 AGTAATTCTAC
1 GGTAATTCTAC
33673148 AACTTATCCA
Statistics
Matches: 142, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
26 7 0.05
27 130 0.92
28 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:33688572 original size:25 final size:25
Alignment explanation
Indices: 33688544--33688617 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
33688534 TCATGAACAT
*
33688544 GTATGCTCATATGAGCTATGAATCG
1 GTATGCTCATATGAGCTATAAATCG
* *
33688569 GTATCCTCATTTGAGCTA-AAGATCG
1 GTATGCTCATATGAGCTATAA-ATCG
33688594 GTATGCTC-TCATGAGCTATAAATC
1 GTATGCTCAT-ATGAGCTATAAATC
33688618 AGTAACCCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
24 2 0.05
25 37 0.90
26 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (25 bp):
GTATGCTCATATGAGCTATAAATCG
Found at i:33695609 original size:40 final size:40
Alignment explanation
Indices: 33695561--33695748 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
33695551 GCTACTCACT
*
33695561 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
33695601 CAATTGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
33695641 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
33695681 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
33695721 GAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
33695749 CAATCCGAAT
Statistics
Matches: 139, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.09
40 126 0.91
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:33695660 original size:80 final size:80
Alignment explanation
Indices: 33695528--33695748 Score: 313
Period size: 80 Copynumber: 2.8 Consensus size: 80
33695518 AAACCAAGTA
** * *
33695528 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCACTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCCCACAAATGCCTTCGGGACTTAGCCCGGTTATA
* *
33695591 GTAACTTGCACAATTG
65 GTAACTCGCACAAATG
* * * *
33695607 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
33695672 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
33695687 CCTTCGGGACTTAGCCCGGATATAGTAACTCCCAGAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAATGCCTTCGGGACTTAGCCCGGTTAT
33695749 CAATCCGAAT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
79 25 0.20
80 101 0.80
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:33717095 original size:47 final size:47
Alignment explanation
Indices: 33717042--33717235 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
33717032 TTAGGATTTT
** * *
33717042 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33717089 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
33717136 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
33717183 ATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGACTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33717230 ATGTGA
1 ATGTGA
33717236 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:33717142 original size:22 final size:22
Alignment explanation
Indices: 33717071--33717142 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
33717061 GTATATATGA
33717071 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
33717093 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
33717118 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
33717140 GAT
1 GAT
33717143 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:33717191 original size:25 final size:25
Alignment explanation
Indices: 33717116--33717191 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
33717106 ATGCATATAT
33717116 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
33717141 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
33717163 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
33717188 GTGA
1 GTGA
33717192 ATGTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:33717583 original size:37 final size:37
Alignment explanation
Indices: 33717438--33717582 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
33717428 GGAAATATAT
33717438 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33717475 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33717512 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
33717549 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
33717583 TCGTCTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:33719141 original size:40 final size:40
Alignment explanation
Indices: 33718865--33719129 Score: 395
Period size: 40 Copynumber: 6.6 Consensus size: 40
33718855 GAGTTATATA
*
33718865 TATCCGGGCTAGGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
33718905 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
33718945 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGGTG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
33718985 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * *
33719025 TATCCGGGCTAAGTTCCGAAGAACATTCGTGCCAGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* ** * * * *
33719065 TATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
33719105 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCA
33719130 ATCATGCTGG
Statistics
Matches: 203, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 203 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:33722991 original size:27 final size:26
Alignment explanation
Indices: 33722960--33723137 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 26
33722950 TAAATTGTAC
33722960 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
33722987 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
*
33723013 ATGCACTAAGTGTGCGAATTGA-TCATGC
1 A-GCACTAAGTGTGCG-ATTGACT-ATGT
*
33723041 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* **
33723069 AGCACTAAGTGTGCGATTTGATTACAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
33723096 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
33723123 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33723138 GGCTCAATAT
Statistics
Matches: 130, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.02
27 103 0.79
28 24 0.18
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:33723128 original size:82 final size:81
Alignment explanation
Indices: 33722957--33723137 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33722947 GATTAAATTG
* *
33722957 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATCATGCACTAA
33723022 GTGTGCGAATTGATCA
66 GTGTGCGAATTGATCA
* * * ** *
33723038 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTA-CATAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATATCAT-GCACT
* *
33723102 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGATCA
* *
33723120 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33723138 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 19 0.23
82 65 0.77
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATCATGCACTAA
GTGTGCGAATTGATCA
Found at i:33723148 original size:27 final size:27
Alignment explanation
Indices: 33723042--33723148 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
33723032 TGATCATGCG
* * * *
33723042 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * *
33723070 GCACTAAGTGTGCGATTTGATTACATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
33723097 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
33723124 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
33723149 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:33731088 original size:27 final size:26
Alignment explanation
Indices: 33731057--33731234 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 26
33731047 TAAATTGTAC
33731057 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
33731084 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
*
33731110 ATGCACTAAGTGTGCGAATTGA-TCATGC
1 A-GCACTAAGTGTGCG-ATTGACT-ATGT
*
33731138 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* **
33731166 AGCACTAAGTGTGCGATTTGATTACAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
33731193 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
33731220 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33731235 GGCTCAATAT
Statistics
Matches: 130, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.02
27 103 0.79
28 24 0.18
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:33731225 original size:82 final size:81
Alignment explanation
Indices: 33731054--33731234 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33731044 GATTAAATTG
* *
33731054 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATCATGCACTAA
33731119 GTGTGCGAATTGATCA
66 GTGTGCGAATTGATCA
* * * ** *
33731135 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTA-CATAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATATCAT-GCACT
* *
33731199 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGATCA
* *
33731217 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33731235 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 19 0.23
82 65 0.77
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATCATGCACTAA
GTGTGCGAATTGATCA
Found at i:33731245 original size:27 final size:27
Alignment explanation
Indices: 33731139--33731245 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
33731129 TGATCATGCG
* * * *
33731139 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * *
33731167 GCACTAAGTGTGCGATTTGATTACATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
33731194 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
33731221 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
33731246 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:33734501 original size:47 final size:47
Alignment explanation
Indices: 33734447--33734640 Score: 291
Period size: 47 Copynumber: 4.1 Consensus size: 47
33734437 TTAGGATTTT
** *
33734447 ATGTGATGAATGTGAATGTGTATATAT-TAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGCCA
33734494 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
33734541 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
33734588 ATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33734635 ATGTGA
1 ATGTGA
33734641 AATATGTATG
Statistics
Matches: 134, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 133 0.99
48 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:33734547 original size:22 final size:22
Alignment explanation
Indices: 33734476--33734547 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
33734466 GTATATATTA
33734476 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
33734498 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
33734523 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
33734545 GAT
1 GAT
33734548 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:33734596 original size:25 final size:25
Alignment explanation
Indices: 33734521--33734596 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
33734511 ATGCATATAT
33734521 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
33734546 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
33734568 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
33734593 GTGA
1 GTGA
33734597 ATGTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:33734988 original size:37 final size:37
Alignment explanation
Indices: 33734843--33734987 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
33734833 GGAAATATAT
33734843 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33734880 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33734917 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
33734954 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
33734988 TCGTTTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:33736483 original size:19 final size:20
Alignment explanation
Indices: 33736461--33736514 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
33736451 TAACTATTTC
33736461 AAATATCATTATTTTTA-GT-
1 AAATAT-ATTATTTTTATGTG
*
33736480 AAATATAATTATTTATATGTG
1 AAATAT-ATTATTTTTATGTG
33736501 AAATAT-TTATTTTT
1 AAATATATTATTTTT
33736515 TCCATCCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 22 0.73
20 2 0.07
21 6 0.20
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.54
Consensus pattern (20 bp):
AAATATATTATTTTTATGTG
Found at i:33742144 original size:47 final size:47
Alignment explanation
Indices: 33742075--33742387 Score: 206
Period size: 47 Copynumber: 6.6 Consensus size: 47
33742065 GTATAATGCC
* *
33742075 GATGCCATGTCCTAGACATGGTCTTACATTGGCTCATTCATCAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATTCATCAAGTT
* * * *
33742122 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-TTTACAT-ATCCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATT-CATCA--AGT--T
** * * *
33742172 GATGCCATGTCCCAGACATGGTCTTACACTAACAC-CTCTAT-ATGTGT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATTC-ATCAAGT-T
* * * *
33742219 CGATGCCATGTCCCAGACAT-ATCTTACACTGGTTTATATC-TCAAGGTC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-TCATCAA-GTT
** *
33742267 GATG-CATGTCCCAGACAT-GTCTTACACTACTCTCA-TC-TCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACT-GGCTCATTCATCAA-GTT
*
33742312 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC--TCAT-AATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATTCATCAA-GT---T
33742360 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
33742388 AGCGCACAAT
Statistics
Matches: 214, Mismatches: 33, Indels: 39
0.75 0.12 0.14
Matches are distributed among these distances:
45 17 0.08
46 54 0.25
47 74 0.35
48 28 0.13
49 5 0.02
50 36 0.17
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATTCATCAAGTT
Found at i:33742337 original size:93 final size:90
Alignment explanation
Indices: 33742121--33742388 Score: 283
Period size: 93 Copynumber: 2.8 Consensus size: 90
33742111 TTCATCAAGT
* *
33742121 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTTACATATCCGTGCCGATGCCATGTCCCA
1 TGATGCCATGTCCCAGACATGGTCTTACACT-G-GTTTATATAT-CG-GCCGATG-CATGTCCCA
*
33742186 GACATGGTCTTACACTAACACCTCTATATGTG
61 GACAT-GTCTTACACT-ACACCTCTATATGTC
* * *
33742218 TCGATGCCATGTCCCAGACAT-ATCTTACACTGGTTTATATCTCAAGGTCGATGCATGTCCCAGA
1 T-GATGCCATGTCCCAGACATGGTCTTACACTGGTTTATATATC--GGCCGATGCATGTCCCAGA
*
33742282 CATGTCTTACACTACTCTCATCTCA-ATG-C
63 CATGTCTTACACTACAC-C-TCT-ATATGTC
* *
33742311 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTGGCCGATGCATGTCCCAGA
1 TGATGCCATGTCCCAGACATGGTCTTACACTGG-T-TTATATAT-CGGCCGATGCATGTCCCAGA
33742375 CATGTCTTACACTA
63 CATGTCTTACACTA
33742389 GCGCACAATA
Statistics
Matches: 149, Mismatches: 12, Indels: 24
0.81 0.06 0.13
Matches are distributed among these distances:
92 22 0.15
93 55 0.37
94 23 0.15
95 18 0.12
96 2 0.01
97 10 0.07
98 19 0.13
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (90 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGTTTATATATCGGCCGATGCATGTCCCAGACAT
GTCTTACACTACACCTCTATATGTC
Found at i:33745263 original size:148 final size:149
Alignment explanation
Indices: 33744995--33745287 Score: 507
Period size: 148 Copynumber: 2.0 Consensus size: 149
33744985 CTCCTGTAGT
**
33744995 GGATGCAATCACGTTTAGATACCTTATTAGTCTAGCAGTATGTAAAAAACTTGATATGTGTCTAA
1 GGATGCAATCACGTTTAGATACCTTATTAGTCTAGCAGTATGTAAAAAACTTGATATACGTCTAA
* *
33745060 TGGATGATGTTACAACCTATTTGTATGGTACACTTGAAAGTGAAATTTATATGAAAATCC-TGAA
66 TAGATGATGTTACAACCTATTTGTATGGTACACTTAAAAGTGAAATTTATATGAAAATCCTTGAA
*
33745124 GGATATAGAGTTTCTTGGG
131 GGATAAAGAGTTTCTTGGG
*
33745143 GGATGCAATCACGTTTAGATACCTTATTAGTCTAGCAGTATGTGAAAAACTTGATATACGTCTAA
1 GGATGCAATCACGTTTAGATACCTTATTAGTCTAGCAGTATGTAAAAAACTTGATATACGTCTAA
* *
33745208 TAGATGTTGTTACAGCCTATTTGTATGGTACACTTAAAAGTGAAATTTATATGAAAATCCTTGAA
66 TAGATGATGTTACAACCTATTTGTATGGTACACTTAAAAGTGAAATTTATATGAAAATCCTTGAA
33745273 GGATAAAGAGTTTCT
131 GGATAAAGAGTTTCT
33745288 CGTGAAAATT
Statistics
Matches: 136, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
148 118 0.87
149 18 0.13
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (149 bp):
GGATGCAATCACGTTTAGATACCTTATTAGTCTAGCAGTATGTAAAAAACTTGATATACGTCTAA
TAGATGATGTTACAACCTATTTGTATGGTACACTTAAAAGTGAAATTTATATGAAAATCCTTGAA
GGATAAAGAGTTTCTTGGG
Found at i:33746797 original size:12 final size:13
Alignment explanation
Indices: 33746780--33746808 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
33746770 TGTTTAATTA
33746780 TATTA-GGATAAT
1 TATTAGGGATAAT
33746792 TATTAGGGATAAT
1 TATTAGGGATAAT
33746805 TATT
1 TATT
33746809 TAGATTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (13 bp):
TATTAGGGATAAT
Found at i:33746850 original size:10 final size:10
Alignment explanation
Indices: 33746831--33746874 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
33746821 TAGGATTTAA
33746831 TTTAATTTATC
1 TTTAA-TTATC
33746842 TTTAATTATC
1 TTTAATTATC
33746852 TTTAATTAT-
1 TTTAATTATC
*
33746861 TTGTATTTATC
1 TT-TAATTATC
33746872 TTT
1 TTT
33746875 TAGAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 2 0.07
10 21 0.70
11 7 0.23
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTAATTATC
Found at i:33748286 original size:23 final size:23
Alignment explanation
Indices: 33748191--33748321 Score: 77
Period size: 23 Copynumber: 5.7 Consensus size: 23
33748181 ACACATAATC
* *
33748191 TTCTGTAAAGCCTTTGTGGCGTA
1 TTCTATAAAGCCTTTGTGGCATA
*
33748214 TT-TAGTAAAG-CTTGTGTGGAATA
1 TTCTA-TAAAGCCTT-TGTGGCATA
* * ** *** *
33748237 TTATGTAAAGATTTTGTGATGTG
1 TTCTATAAAGCCTTTGTGGCATA
33748260 TTCTATAAAGCCTTTGTGGCATA
1 TTCTATAAAGCCTTTGTGGCATA
* * * * *
33748283 TTCTGTGATGCCTATGTGGCACA
1 TTCTATAAAGCCTTTGTGGCATA
*
33748306 TTCTATAATGCCTTTG
1 TTCTATAAAGCCTTTG
33748322 AGGTGAGATC
Statistics
Matches: 79, Mismatches: 25, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
22 4 0.05
23 72 0.91
24 3 0.04
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.41
Consensus pattern (23 bp):
TTCTATAAAGCCTTTGTGGCATA
Found at i:33750804 original size:33 final size:33
Alignment explanation
Indices: 33750767--33750834 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
33750757 CAACAAAAGA
33750767 ATGTTAAATTAATTAAATAAAATTACATATTAT
1 ATGTTAAATTAATTAAATAAAATTACATATTAT
33750800 ATGTTAAATTAATTAAATAAAATTACATATTAT
1 ATGTTAAATTAATTAAATAAAATTACATATTAT
33750833 AT
1 AT
33750835 TTATTTTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (33 bp):
ATGTTAAATTAATTAAATAAAATTACATATTAT
Found at i:33751432 original size:21 final size:21
Alignment explanation
Indices: 33751408--33751470 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
33751398 AATTCTAAAG
*
33751408 TTATTTATTATGAAAAATAAT
1 TTATTTATTATAAAAAATAAT
33751429 TTATATT-TTATAAAAATTATAAT
1 TTAT-TTATTATAAAAA--ATAAT
*
33751452 ATATTTATTTATAAAAAAT
1 TTATTTA-TTATAAAAAAT
33751471 TATGACAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
21 12 0.34
22 6 0.17
23 8 0.23
24 9 0.26
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTATTTATTATAAAAAATAAT
Found at i:33751435 original size:23 final size:23
Alignment explanation
Indices: 33751409--33751468 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
33751399 ATTCTAAAGT
*
33751409 TATTTATTATGAAAAATAAT-TTA
1 TATTTATTAT-AAAAATAATAATA
*
33751432 TA-TT-TTATAAAAATTATAATA
1 TATTTATTATAAAAATAATAATA
33751453 TATTTATTTATAAAAA
1 TATTTA-TTATAAAAA
33751469 ATTATGACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
20 8 0.26
21 8 0.26
22 4 0.13
23 2 0.06
24 9 0.29
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TATTTATTATAAAAATAATAATA
Found at i:33753568 original size:7 final size:7
Alignment explanation
Indices: 33753556--33753582 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
33753546 TTCGGCTTAA
33753556 TGCCAGT
1 TGCCAGT
33753563 TGCCAGT
1 TGCCAGT
33753570 TGCCAGT
1 TGCCAGT
33753577 TGCCAG
1 TGCCAG
33753583 CTCTGAGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.26
Consensus pattern (7 bp):
TGCCAGT
Found at i:33759115 original size:27 final size:27
Alignment explanation
Indices: 33759085--33759138 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
33759075 ATTTTGCCAA
33759085 TCTATTTAACAAGCTAGAGTTCACCAG
1 TCTATTTAACAAGCTAGAGTTCACCAG
* *
33759112 TCTATTTAACGAGCTGGAGTTCACCAG
1 TCTATTTAACAAGCTAGAGTTCACCAG
33759139 GTAAGTTGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (27 bp):
TCTATTTAACAAGCTAGAGTTCACCAG
Found at i:33759571 original size:13 final size:13
Alignment explanation
Indices: 33759553--33759578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33759543 GTGTGAAAAT
33759553 GTTATGTTTTAAA
1 GTTATGTTTTAAA
33759566 GTTATGTTTTAAA
1 GTTATGTTTTAAA
33759579 TATAAGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
GTTATGTTTTAAA
Found at i:33777996 original size:14 final size:14
Alignment explanation
Indices: 33777977--33778005 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33777967 AATATTTTTG
33777977 AGTAATAAGTGAAA
1 AGTAATAAGTGAAA
33777991 AGTAATAAGTGAAA
1 AGTAATAAGTGAAA
33778005 A
1 A
33778006 TGCCTCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (14 bp):
AGTAATAAGTGAAA
Found at i:33789778 original size:22 final size:21
Alignment explanation
Indices: 33789738--33789778 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
33789728 CTCTTAACAT
* *
33789738 AGGGGCACATGCCCGTGTGGA
1 AGGGGCACACGCCCATGTGGA
33789759 AGGGGCAACACGCCCATGTG
1 AGGGGC-ACACGCCCATGTG
33789779 ACATATCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGA
Found at i:33794825 original size:28 final size:29
Alignment explanation
Indices: 33794760--33794825 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
33794750 ATTGAAATTG
* ***
33794760 AAAGAAAAAGTACAAGAAAAATGATTGAA
1 AAAGAGAAAGTACAAGAAAAATGAAAAAA
33794789 AAAGAGAAAG-ACAAGAAAAATGAAAAAA
1 AAAGAGAAAGTACAAGAAAAATGAAAAAA
33794817 GAAAG-GAAA
1 -AAAGAGAAA
33794826 AAGTGAGAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 19 0.59
29 13 0.41
ACGTcount: A:0.70, C:0.03, G:0.20, T:0.08
Consensus pattern (29 bp):
AAAGAGAAAGTACAAGAAAAATGAAAAAA
Found at i:33802733 original size:47 final size:47
Alignment explanation
Indices: 33802679--33802872 Score: 291
Period size: 47 Copynumber: 4.1 Consensus size: 47
33802669 TTAGGATTTT
** * *
33802679 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33802726 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
33802773 ATGTGATGAATGT-AAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
33802820 ATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33802867 ATGTGA
1 ATGTGA
33802873 AATATGTACG
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 2 0.01
47 130 0.97
48 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:33802779 original size:22 final size:22
Alignment explanation
Indices: 33802708--33802779 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
33802698 GTATATATGA
33802708 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
33802730 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
33802755 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
33802777 GAT
1 GAT
33802780 GAATGTAAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:33802828 original size:25 final size:25
Alignment explanation
Indices: 33802753--33802828 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 25
33802743 ATGCATATAT
33802753 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * *** *
33802778 ATGA-ATGTAAGCAT-G-CATATGT-
1 GTGATAAGGCCGAATGGCCA-ATGTG
33802800 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
33802825 GTGA
1 GTGA
33802829 ATGTGAACAT
Statistics
Matches: 34, Mismatches: 12, Indels: 10
0.61 0.21 0.18
Matches are distributed among these distances:
22 5 0.15
23 10 0.29
24 10 0.29
25 9 0.26
ACGTcount: A:0.30, C:0.13, G:0.33, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:33802880 original size:94 final size:95
Alignment explanation
Indices: 33802708--33802976 Score: 309
Period size: 94 Copynumber: 2.8 Consensus size: 95
33802698 GTATATATGA
* * * *
33802708 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
*
33802773 ATGTGATGA-ATGTA-AG-CATGCATATGTG
66 ATGTGA-AATATGTACAGACATGCATATGTG
33802801 TGATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCT
1 -GATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCT
* *
33802866 AATGTGAAATATGTACGAGATATGTATATGTG
65 AATGTGAAATATGTAC-AGACATGCATATGTG
* * ** *
33802898 G-TAAAGCCGAATGGCTAATGT-GAAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATG
1 GATAAGGCCGAATGGCCAATGTGGTGA-ATG--TGA-ACATGCATATATGTGGTAAAGCCGAATG
*
33802959 GCTAGTGTGAAATATGTA
62 GCTAATGTGAAATATGTA
33802977 GGCGATGTGC
Statistics
Matches: 154, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
93 1 0.01
94 74 0.48
95 21 0.14
96 41 0.27
97 13 0.08
98 4 0.03
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (95 bp):
GATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
ATGTGAAATATGTACAGACATGCATATGTG
Found at i:33802905 original size:48 final size:48
Alignment explanation
Indices: 33802842--33802976 Score: 252
Period size: 48 Copynumber: 2.8 Consensus size: 48
33802832 TGAACATGCA
33802842 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATG
*
33802890 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATG
*
33802938 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
33802977 GGCGATGTGC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATG
Found at i:33803268 original size:37 final size:37
Alignment explanation
Indices: 33803123--33803267 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
33803113 CGAAATATAT
33803123 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33803160 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33803197 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
33803234 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
33803268 TCGTCTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:33804558 original size:23 final size:23
Alignment explanation
Indices: 33804532--33804598 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
33804522 ATATATCCGG
33804532 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
33804555 GCT-AGT---G-A-TGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
33804572 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
33804595 GCTA
1 GCTA
33804599 GTGATGTATC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 4 0.13
19 1 0.03
21 1 0.03
22 4 0.13
23 12 0.40
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:33805001 original size:40 final size:40
Alignment explanation
Indices: 33804525--33804989 Score: 732
Period size: 40 Copynumber: 11.6 Consensus size: 40
33804515 GAGTTATATA
33804525 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
33804565 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
33804605 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
33804645 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
33804685 TATCTGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* ** * *
33804725 TATCCGAGCTAAGTTTCGAAGAACATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
33804765 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
33804805 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGGTG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
33804845 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * *
33804885 TATCCGGGCTAAGTTCCGAAGAACATTCGTGCCAGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* ** * * *
33804925 TATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
33804965 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCA
33804990 ATCATGCTGG
Statistics
Matches: 389, Mismatches: 36, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 389 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:33808570 original size:46 final size:45
Alignment explanation
Indices: 33808435--33808611 Score: 117
Period size: 46 Copynumber: 3.8 Consensus size: 45
33808425 ACATTATGAG
* * *
33808435 AGCCTGTGTAAGACCATGTCT-GAGACATGGCATCGGCATCGAGATGAGT
1 AGCCAGTGTAA-AACATGTCTGGA-ACAT-GCATCGGC-TCGAGACGA-T
* * * * * *
33808484 -GCTAGTGTAAGACATATCCGGGACATGCATCAGCCTCGAGACG-T
1 AGCCAGTGTAAAACATGTCTGGAACATGCATC-GGCTCGAGACGAT
*
33808528 AAGCCAGTGTAAAACATGTCTGGAACATGCATCGGCTACGAGATGAT
1 -AGCCAGTGTAAAACATGTCTGGAACATGCATCGGCT-CGAGACGAT
* * * *
33808575 AGTCAGTGTAAGACCATGTTTGGAATATGGCATCGGC
1 AGCCAGTGTAA-AACATGTCTGGAACAT-GCATCGGC
33808612 ACCCTACCCC
Statistics
Matches: 100, Mismatches: 20, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
44 1 0.01
45 3 0.03
46 54 0.54
47 25 0.25
48 17 0.17
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AGCCAGTGTAAAACATGTCTGGAACATGCATCGGCTCGAGACGAT
Found at i:33825051 original size:46 final size:48
Alignment explanation
Indices: 33824904--33825125 Score: 189
Period size: 46 Copynumber: 4.7 Consensus size: 48
33824894 GTTATTGTGG
* *
33824904 GCTAGTGTAAGACATGTTTGGGACATGCATCTG-CT--AGATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TATGAGA
* * *
33824950 GCCTA-TGTAAGACCATGTCTGGGACATGACATCGACATCGA-A-ATGAGT
1 G-CTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGATATGAGA
* *
33824998 GCTAGTGTAAGACATGTCCGGGACATGCATCGGCCTCGAGACAT-A-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGAGA
* * *
33825044 GCTAGTGTAAGACATGTGTAGGACATGCATCGG-CTACGAGATA--ATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATATGAGA
*
33825090 G-TCAGTGTAAGACCATGTCTGGGATATGGCATCGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
33825126 ACCCTACCCT
Statistics
Matches: 145, Mismatches: 16, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
45 4 0.03
46 65 0.45
47 47 0.32
48 26 0.18
49 1 0.01
50 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGAGA
Found at i:33831501 original size:26 final size:24
Alignment explanation
Indices: 33831464--33831512 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
33831454 AAGGATATAC
*
33831464 ATATATAGATTTAAAATAGATAAA
1 ATATATAGATTTAAAATAAATAAA
*
33831488 ATATATATGAATTTCAAATAAATAA
1 ATATATA-G-ATTTAAAATAAATAA
33831513 TATGTACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 1 0.05
26 13 0.62
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (24 bp):
ATATATAGATTTAAAATAAATAAA
Found at i:33833781 original size:177 final size:177
Alignment explanation
Indices: 33833579--33834343 Score: 1190
Period size: 177 Copynumber: 4.3 Consensus size: 177
33833569 GCTACCTTGG
* * * *
33833579 GAAGATAAAACTCGCCGTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAGATCTACAATTTT
1 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTT
*
33833644 TAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTATCTTGAACCTGCTCCACTGCAACTT
66 CAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTATCTTGAACCTGCTCCACTGCAACTT
*
33833709 CAGAGAGATTAGGCTGGTGGCTTAAATCTGCTCCATTGCCGCTACAT
131 CAGGGAGATTAGGCTGGTGGCTTAAATCTGCTCCATTGCCGCTACAT
* * * *
33833756 GAAGATAAGATTCGCCGTTTTCGATCTGCTCTACTACTGCTTAAGGAGATAAGATCTGCAATTTT
1 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTT
* * *
33833821 TAGTTTGCTCCACTGCAACCTCAGAGAGATAAGACTTGTATCTTGAACCTGCTCCACTGCAACTT
66 CAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTATCTTGAACCTGCTCCACTGCAACTT
*
33833886 CAGGGAGATTAGGCTGGTGGCTTAAATCTGCTCCATTGCCGCTACAC
131 CAGGGAGATTAGGCTGGTGGCTTAAATCTGCTCCATTGCCGCTACAT
* * * **
33833933 GGAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTT
1 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTT
* * *
33833998 CAGTCTGTTCCACTGTAACCTCAGGGAGATAAGACTTGTATCTTGAACCTACTCCACTGCAACTT
66 CAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTATCTTGAACCTGCTCCACTGCAACTT
*
33834063 CAGGGAGATTAGGCTGGTGGCTTAAATCTGCTCCATTGTCGCTACAT
131 CAGGGAGATTAGGCTGGTGGCTTAAATCTGCTCCATTGCCGCTACAT
* *
33834110 -AGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTACAATTT
1 GA-AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTT
* * * * *
33834174 TCAGTCTGCTCCACTACCACTTCAGGGAGATAAGACTTGTATCTTAAACCTGCTCCACTGAAACT
65 TCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTATCTTGAACCTGCTCCACTGCAACT
* * * *
33834239 TTAGGGAGATAAGGCTGGTAGCTTAAATCTACTCCATTGCCGCTACAT
130 TCAGGGAGATTAGGCTGGTGGCTTAAATCTGCTCCATTGCCGCTACAT
* *
33834287 GAAGATAAAATTCGCCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCT
1 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
33834344 GCAAATTCAC
Statistics
Matches: 535, Mismatches: 51, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
177 534 1.00
178 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (177 bp):
GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTT
CAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTATCTTGAACCTGCTCCACTGCAACTT
CAGGGAGATTAGGCTGGTGGCTTAAATCTGCTCCATTGCCGCTACAT
Found at i:33834028 original size:89 final size:89
Alignment explanation
Indices: 33833594--33834341 Score: 243
Period size: 88 Copynumber: 8.4 Consensus size: 89
33833584 TAAAACTCGC
* * * ** *
33833594 CGTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAGATCTACAATTTTTAGTCTGCTCCACTG
1 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCACTG
*
33833659 CAACCTCAGGGAGATAAGACTT-GT
66 TAACCTCAGGGAGATAAGA-TTCGT
* * * ** * * ** * *** *
33833683 -ATCTT-GAACCTGCTCCACTGCAACTTCAGAGAGATTAGGCTGGT-GGCTTAAATCTGCTCCA-
1 CGTCTTCG-ATCTGCTCCACTACTGCTT-AGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCAC
** * * *
33833744 T-TGCCGCTACATGAAGATAAGATTCGC
64 TGTAAC-CT-CAGGGAGATAAGATTCGT
* * * * * * *
33833771 CGTTTTCGATCTGCTCTACTACTGCTTAAGGAGATAAGATCTGCAATTTTTAGTTTGCTCCACTG
1 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCACTG
* *
33833836 CAACCTCAGAGAGATAAGACTT-GT
66 TAACCTCAGGGAGATAAGA-TTCGT
* * * ** * ** * *** *
33833860 -ATCTT-GAACCTGCTCCACTGCAACTTCAGGGAGATTAGGCTGGT-GGCTTAAATCTGCTCCA-
1 CGTCTTCG-ATCTGCTCCACTACTGCTT-AGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCAC
** *
33833921 T-TGCCGCTACACGGAGATAAGATTCGT
64 TGTAAC-CT-CAGGGAGATAAGATTCGT
* *
33833948 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTCAGTCTGTTCCACTG
1 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCACTG
33834013 TAACCTCAGGGAGATAAGACTT-GT
66 TAACCTCAGGGAGATAAGA-TTCGT
* * * * ** * ** * *** * *
33834037 -ATCTT-GAACCTACTCCACTGCAACTTCAGGGAGATTAGGCTGGT-GGCTTAAATCTGCTCCAT
1 CGTCTTCG-ATCTGCTCCACTACTGCTT-AGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCAC
**
33834099 TGT--CGCTACATAGAGATAAGATTCG-
64 TGTAAC-CT-CAGGGAGATAAGATTCGT
* * ** *
33834124 CTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTACAATTTTCAGTCTGCTCCACT
1 C-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCACT
*** *
33834189 ACCACTTCAGGGAGATAAGACTT-GT
65 GTAACCTCAGGGAGATAAGA-TTCGT
* ** * ** * ** * *
33834214 -ATCTTAAACCTGCTCCACTGAAACT--TTAGGGAGATAAGGCTGGT-AGCTTAAATCTACTCCA
1 CGTCTTCGATCTGCTCCACT---ACTGCTTAGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCA
** * * * *
33834275 -T-TGCCGCTACATGAAGATAAAATTCGC
63 CTGTAAC-CT-CAGGGAGATAAGATTCGT
*
33834302 CGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGAT
1 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
33834342 CTGCAAATTC
Statistics
Matches: 447, Mismatches: 168, Indels: 89
0.63 0.24 0.13
Matches are distributed among these distances:
86 7 0.02
87 21 0.05
88 212 0.47
89 184 0.41
90 16 0.04
91 7 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (89 bp):
CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTAAGTCTGCTCCACTG
TAACCTCAGGGAGATAAGATTCGT
Found at i:33834227 original size:44 final size:44
Alignment explanation
Indices: 33833602--33834274 Score: 284
Period size: 44 Copynumber: 15.2 Consensus size: 44
33833592 GCCGTCTTCG
* *** * *
33833602 ATCTGCTCCACTGCTACTT-AGGGAGATAAGATCTACAATTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTATCTTAA
* * *
33833646 GTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTATCTTGA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
* * * * * **
33833690 ACCTGCTCCACTGCAACTTCAGAGAGATTAGGCTGGTGGCTTAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
* ** * * * ** * **
33833734 ATCTGCTCCATTGCCGCTACATGAAGATAAGA-TTCGCCGTTTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TATCTTAA
* * ** * * * *
33833779 ATCTGCTCTACTACTGCTT-AAGGAGATAAGA-TCTGCAATTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TG-TATCTTAA
* * * * *
33833823 GTTTGCTCCACTGCAACCTCAGAGAGATAAGACTTGTATCTTGA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
* * * * **
33833867 ACCTGCTCCACTGCAACTTCAGGGAGATTAGGCTGGTGGCTTAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
* ** * * * **
33833911 ATCTGCTCCATTGCCGCTACACGGAGATAAGA-TTCGTCGTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GT-ATCTTAA
* ** * * *
33833956 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATTTGTAATTTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT-ATCTTAA
* * * * *
33834000 GTCTGTTCCACTGTAACCTCAGGGAGATAAGACTTGTATCTTGA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
* * * * * **
33834044 ACCTACTCCACTGCAACTTCAGGGAGATTAGGCTGGTGGCTTAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
* * * ** * **
33834088 ATCTGCTCCATTGTC-GCTACATAGAGATAAGA-TTCGCTGTCTTCG
1 ATCTGCTCCACTG-CAACTTCAGGGAGATAAGACTT-G-TATCTTAA
* ** * *** * *
33834133 ATCTGCTCCACTACTGCTT-AGGGAGAAAAGATCTACAATTTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTATCTTAA
* * *
33834177 GTCTGCTCCACTACCACTTCAGGGAGATAAGACTTGTATCTTAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
* * * * * *
33834221 ACCTGCTCCACTGAAACTTTAGGGAGATAAGGCTGGTAGCTTAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
*
33834265 ATCTACTCCA
1 ATCTGCTCCA
33834275 TTGCCGCTAC
Statistics
Matches: 456, Mismatches: 156, Indels: 34
0.71 0.24 0.05
Matches are distributed among these distances:
43 3 0.01
44 341 0.75
45 110 0.24
46 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTAA
Found at i:33836005 original size:26 final size:24
Alignment explanation
Indices: 33835968--33836016 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
33835958 AAGGATATAC
*
33835968 ATATATAGATTTAAAATAGATAAA
1 ATATATAGATTTAAAATAAATAAA
*
33835992 ATATATATGAATTTCAAATAAATAA
1 ATATATA-G-ATTTAAAATAAATAA
33836017 TATGTATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 1 0.05
26 13 0.62
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (24 bp):
ATATATAGATTTAAAATAAATAAA
Found at i:33844224 original size:3 final size:3
Alignment explanation
Indices: 33844216--33844257 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
33844206 CTTGTTTGGT
33844216 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33844258 GGTTATGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33848841 original size:3 final size:3
Alignment explanation
Indices: 33848835--33848989 Score: 65
Period size: 3 Copynumber: 51.7 Consensus size: 3
33848825 TTTTTTTACA
* *
33848835 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * * *
33848879 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
33848924 CA- TAT TAAT TAT T-T TCT AACG TAT TAT TAT TACT AAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT
33848970 T-T CTAGT T-T TAT TAT TAT TA
1 TAT -TA-T TAT TAT TAT TAT TA
33848990 ATACTAGTGT
Statistics
Matches: 112, Mismatches: 24, Indels: 32
0.67 0.14 0.19
Matches are distributed among these distances:
2 12 0.11
3 88 0.79
4 11 0.10
5 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:33848863 original size:23 final size:23
Alignment explanation
Indices: 33848837--33848882 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
33848827 TTTTTACATA
33848837 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
33848860 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
33848883 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:33849019 original size:17 final size:16
Alignment explanation
Indices: 33848997--33849030 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
33848987 TTAATACTAG
33848997 TGTATGTATATTATATA
1 TGTATGTATA-TATATA
33849014 TGTATGTATATATATA
1 TGTATGTATATATATA
33849030 T
1 T
33849031 TTATATATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (16 bp):
TGTATGTATATATATA
Found at i:33849300 original size:44 final size:43
Alignment explanation
Indices: 33849225--33849344 Score: 156
Period size: 44 Copynumber: 2.8 Consensus size: 43
33849215 TATGTTTTCA
33849225 ATATTATAT-TTTTTATA-TATTATTATATATATTT-TAATATT
1 ATATTATATATTTTTATACTATTA-TATATATATTTCTAATATT
*
33849266 ATTAGTTATATATTTTTATACTATTATATGTATATTTCTAATATT
1 A-TA-TTATATATTTTTATACTATTATATATATATTTCTAATATT
* *
33849311 ATATTGTATATTTCTAATACTATTATATATATAT
1 ATATTATATATTT-TTATACTATTATATATATAT
33849345 ATGTGTATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
41 1 0.01
42 2 0.03
43 15 0.22
44 38 0.55
45 13 0.19
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (43 bp):
ATATTATATATTTTTATACTATTATATATATATTTCTAATATT
Found at i:33849339 original size:19 final size:20
Alignment explanation
Indices: 33849225--33849340 Score: 69
Period size: 22 Copynumber: 5.5 Consensus size: 20
33849215 TATGTTTTCA
*
33849225 ATATTATAT-TTT-TTATAT
1 ATATTATATATTTCTAATAT
*
33849243 ATTATTATATATATTTTAATATT
1 A-TATTATATAT-TTCTAATA-T
*
33849266 ATTAGTTATATATTT-TTATACT
1 A-TA-TTATATATTTCTAATA-T
*
33849288 ATTATATGTATATTTCTAATATT
1 A-TAT-TATATATTTCTAATA-T
*
33849311 ATATTGTATATTTCTAATA-
1 ATATTATATATTTCTAATAT
*
33849330 CTATTATATAT
1 ATATTATATAT
33849341 ATATATGTGT
Statistics
Matches: 82, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
18 1 0.01
19 17 0.21
20 1 0.01
21 18 0.22
22 24 0.29
23 13 0.16
24 8 0.10
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
ATATTATATATTTCTAATAT
Found at i:33849467 original size:22 final size:22
Alignment explanation
Indices: 33849409--33849468 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
33849399 CTAAGGTATG
*
33849409 TATATATTGTATATGTTTTATA
1 TATATATTGTATATGTTTTAAA
* *
33849431 TATGT-TATGTATATATTTTTAAA
1 TATATAT-TGTATAT-GTTTTAAA
33849454 TACTATATTGTATAT
1 TA-TATATTGTATAT
33849469 ATATATATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
21 1 0.03
22 11 0.37
23 8 0.27
24 9 0.30
25 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (22 bp):
TATATATTGTATATGTTTTAAA
Found at i:33849474 original size:30 final size:28
Alignment explanation
Indices: 33849427--33849501 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 28
33849417 GTATATGTTT
* *
33849427 TATATATGTTATGTATATATTTTTAAATAC
1 TATAT-TGTTATATATATATTCTT-AATAC
33849457 TATATTGTATATATATATATTCTTAATAC
1 TATATTGT-TATATATATATTCTTAATAC
*
33849486 CATATTGTGTATATAT
1 TATATTGT-TATATAT
33849502 CATTATTACA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 22 0.55
30 18 0.45
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (28 bp):
TATATTGTTATATATATATTCTTAATAC
Found at i:33849500 original size:31 final size:30
Alignment explanation
Indices: 33849440--33849501 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
33849430 ATATGTTATG
* *
33849440 TATATATTTTTAAATACTATATTGTATATA
1 TATATATTCTTAAATACCATATTGTATATA
*
33849470 TATATATTCTT-AATACCATATTGTGTATA
1 TATATATTCTTAAATACCATATTGTATATA
33849499 TAT
1 TAT
33849502 CATTATTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.37, C:0.06, G:0.05, T:0.52
Consensus pattern (30 bp):
TATATATTCTTAAATACCATATTGTATATA
Found at i:33849635 original size:34 final size:36
Alignment explanation
Indices: 33849592--33849658 Score: 86
Period size: 34 Copynumber: 1.9 Consensus size: 36
33849582 TATATATAGT
*
33849592 ATTATTTTCA-TAT-ATCA-TTATAATTATTATACCC
1 ATTAGTTTCACTATCATCACTTATAATT-TTATACCC
*
33849626 ATTAGTTTCACTATCATCACTTATTATTTTATA
1 ATTAGTTTCACTATCATCACTTATAATTTTATA
33849659 TTACTATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 9 0.32
35 3 0.11
36 9 0.32
37 7 0.25
ACGTcount: A:0.33, C:0.15, G:0.01, T:0.51
Consensus pattern (36 bp):
ATTAGTTTCACTATCATCACTTATAATTTTATACCC
Found at i:33856423 original size:20 final size:20
Alignment explanation
Indices: 33856398--33856456 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
33856388 TTGTACAAGA
* *
33856398 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTAT
33856418 TTGCACTTCGGTGCCTCTAT
1 TTGCACTTCGGTGCCTCTAT
* *
33856438 TTGCACTACGGTACCTCTA
1 TTGCACTTCGGTGCCTCTA
33856457 GTTAGCATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.12, C:0.29, G:0.20, T:0.39
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTAT
Found at i:33860151 original size:45 final size:45
Alignment explanation
Indices: 33860095--33860182 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
33860085 GAACTATGTG
*
33860095 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGAC
* *
33860140 ATCTGAACTCATTGAGTTATGTTCTGAGTTCATGATGTATGTG
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTG
33860183 GCACATGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGAC
Found at i:33866455 original size:51 final size:52
Alignment explanation
Indices: 33866387--33866489 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 52
33866377 TATTTTCTAA
33866387 AATGAAAATGAATAATAAATGTCTCCTTCCTTC-TTTCCATAAGTTATTCTC
1 AATGAAAATGAATAATAAATGTCTCCTTCCTTCTTTTCCATAAGTTATTCTC
*
33866438 AATGAAAATGAATAATAAGTGTCTCCTTCCTTCTTTTCCATAAGTTATTCTC
1 AATGAAAATGAATAATAAATGTCTCCTTCCTTCTTTTCCATAAGTTATTCTC
33866490 TTTTTCTTAC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 32 0.64
52 18 0.36
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (52 bp):
AATGAAAATGAATAATAAATGTCTCCTTCCTTCTTTTCCATAAGTTATTCTC
Found at i:33866924 original size:31 final size:31
Alignment explanation
Indices: 33866889--33866947 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
33866879 TTCTTTTAAC
33866889 AATTAAATCGTGAATTATTATTTATTAAAAA
1 AATTAAATCGTGAATTATTATTTATTAAAAA
* * *
33866920 AATTAAATTGTGATTTATTTTTTATTAA
1 AATTAAATCGTGAATTATTATTTATTAA
33866948 CTATCATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (31 bp):
AATTAAATCGTGAATTATTATTTATTAAAAA
Found at i:33867389 original size:25 final size:25
Alignment explanation
Indices: 33867339--33867389 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
33867329 CTGACTTGTA
* * *
33867339 GTTAGGGTTTTCCTTTTGTAGTTTT
1 GTTAGGGTTTGCATTTTGTAGGTTT
33867364 GTTAGGGTTTGCA-TTTGTTAGGTTT
1 GTTAGGGTTTGCATTTTG-TAGGTTT
33867389 G
1 G
33867390 GGCTCTAGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.10, C:0.06, G:0.29, T:0.55
Consensus pattern (25 bp):
GTTAGGGTTTGCATTTTGTAGGTTT
Found at i:33868159 original size:17 final size:18
Alignment explanation
Indices: 33868123--33868166 Score: 81
Period size: 17 Copynumber: 2.5 Consensus size: 18
33868113 AGTCAAAATT
33868123 TATTTTATAATAAGATAA
1 TATTTTATAATAAGATAA
33868141 TATTTTATAATAA-ATAA
1 TATTTTATAATAAGATAA
33868158 TATTTTATA
1 TATTTTATA
33868167 TAGACTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
TATTTTATAATAAGATAA
Found at i:33868471 original size:21 final size:22
Alignment explanation
Indices: 33868440--33868481 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
33868430 ATGTTTAATA
33868440 ATATTGAAAA-TTATAATATTTG
1 ATATTGAAAATTTA-AATATTTG
33868462 ATATT-AAAATTTAAATATTT
1 ATATTGAAAATTTAAATATTT
33868482 TTTAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (22 bp):
ATATTGAAAATTTAAATATTTG
Found at i:33869062 original size:20 final size:20
Alignment explanation
Indices: 33869020--33869073 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
33869010 ATTATTAATA
**
33869020 AATTTAAATTTTACTAACTT
1 AATTTAAATTTTACTAAAAT
33869040 AATTTAAATTATTA-TAAAAT
1 AATTTAAATT-TTACTAAAAT
33869060 AATCATTAAATTTT
1 AAT--TTAAATTTT
33869074 TTTAAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 17 0.59
21 5 0.17
22 7 0.24
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (20 bp):
AATTTAAATTTTACTAAAAT
Found at i:33870304 original size:12 final size:12
Alignment explanation
Indices: 33870289--33870315 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33870279 TTTGCCTAGC
33870289 AATTGATTAGAA
1 AATTGATTAGAA
33870301 AATTGATTAGAA
1 AATTGATTAGAA
33870313 AAT
1 AAT
33870316 CAATTTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (12 bp):
AATTGATTAGAA
Found at i:33885273 original size:47 final size:47
Alignment explanation
Indices: 33885174--33885347 Score: 219
Period size: 47 Copynumber: 3.7 Consensus size: 47
33885164 GATTTTTTGT
* * * *
33885174 GTGCCAGTATAAGACATGTCTGGGACATGCATCGG-CCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGTCTAGATAATGA
* * *
33885220 GGGCCAGTGTAAGACATGTCTGGGACATGGCATCGGTGTAGA-GATGA
1 GTGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGTCTAGATAATGA
*
33885267 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGTCTCGATAATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGTCTAGATAATGA
* *
33885314 -TAGCCAATGTAAGACGTGTCTGGGACATGCATCG
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCG
33885348 ACTAAGAGTC
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
46 38 0.34
47 72 0.64
48 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (47 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGTCTAGATAATGA
Found at i:33885346 original size:93 final size:93
Alignment explanation
Indices: 33885174--33885347 Score: 260
Period size: 93 Copynumber: 1.9 Consensus size: 93
33885164 GATTTTTTGT
* * *
33885174 GTGCCAGTATAAGACATGTCTGGGACATGCATCGGCCACATTATGAGGGCCAGTGTAAGACATGT
1 GTGCCAGTATAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAATGTAAGACATGT
33885239 CTGGGACATGGCATCGGTGTAGAGATGA
66 CTGGGACATGGCATCGGTGTAGAGATGA
* * * * *
33885267 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGTCTCGATAATGATAGCCAATGTAAGACGTG
1 GTGCCAGTATAAGACATGTCTGGGACATGCATCGGCCAC-ATAATGAGAGCCAATGTAAGACATG
33885332 TCTGGGACAT-GCATCG
65 TCTGGGACATGGCATCG
33885348 ACTAAGAGTC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 42 0.58
94 30 0.42
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (93 bp):
GTGCCAGTATAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAATGTAAGACATGT
CTGGGACATGGCATCGGTGTAGAGATGA
Found at i:33886265 original size:55 final size:55
Alignment explanation
Indices: 33886181--33886315 Score: 186
Period size: 55 Copynumber: 2.5 Consensus size: 55
33886171 GCACTTAAAA
* * *
33886181 TTTT-AAGTCAGT-TTAGTACACGGGCAGGCCATACGAGCGTGTGTCATGGCCGTG
1 TTTTAAAGTCAGTGTT-GCACACGGGTAGGCCATACGAGCATGTGTCATGGCCGTG
* *
33886235 TTTTAAAGTTAGTGTTGTC-CACGGGTAGGCCATACGGGCATGTGTCATGGCCGTG
1 TTTTAAAGTCAGTGTTG-CACACGGGTAGGCCATACGAGCATGTGTCATGGCCGTG
33886290 TTTTAAAGTCAGTGTTGCACACGGGT
1 TTTTAAAGTCAGTGTTGCACACGGGT
33886316 TAAGGGCAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
54 5 0.07
55 64 0.90
56 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (55 bp):
TTTTAAAGTCAGTGTTGCACACGGGTAGGCCATACGAGCATGTGTCATGGCCGTG
Found at i:33890581 original size:18 final size:18
Alignment explanation
Indices: 33890558--33890596 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
33890548 TTTTGGGCCT
33890558 AAAACAAATAACCTACCC
1 AAAACAAATAACCTACCC
33890576 AAAACAAATAACCTACCC
1 AAAACAAATAACCTACCC
33890594 AAA
1 AAA
33890597 TAACTCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.59, C:0.31, G:0.00, T:0.10
Consensus pattern (18 bp):
AAAACAAATAACCTACCC
Found at i:33890596 original size:13 final size:12
Alignment explanation
Indices: 33890580--33890612 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
33890570 CTACCCAAAA
33890580 CAAATAACCTACC
1 CAAATAACCT-CC
33890593 CAAATAA-CTCC
1 CAAATAACCTCC
33890604 CAAATAACC
1 CAAATAACC
33890613 CCAGACCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 9 0.47
12 3 0.16
13 7 0.37
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.15
Consensus pattern (12 bp):
CAAATAACCTCC
Found at i:33892127 original size:18 final size:18
Alignment explanation
Indices: 33892096--33892130 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33892086 TGTTTGTTTT
*
33892096 TATATCTATGTATATAGA
1 TATATCTATATATATAGA
*
33892114 TATATGTATATATATAG
1 TATATCTATATATATAG
33892131 TAATTTTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (18 bp):
TATATCTATATATATAGA
Found at i:33892313 original size:23 final size:23
Alignment explanation
Indices: 33892273--33892319 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
33892263 TGTTACACCA
*
33892273 TTTACTATTATTACTATTGTATT
1 TTTACTATTATTACTATTATATT
**
33892296 TTTACTATTATTGTTATTATATT
1 TTTACTATTATTACTATTATATT
33892319 T
1 T
33892320 CCCTCTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (23 bp):
TTTACTATTATTACTATTATATT
Found at i:33892664 original size:18 final size:18
Alignment explanation
Indices: 33892643--33892709 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
33892633 ATTATTATTT
*
33892643 TTATTATTATCATCAATA
1 TTATTATTATCAACAATA
* * * *
33892661 TTATAATTTTACCACCACTA
1 TTAT--TATTATCAACAATA
* *
33892681 TTATCATTATCAACATTA
1 TTATTATTATCAACAATA
33892699 TTATTATTATC
1 TTATTATTATC
33892710 GTTTTCATCA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
18 23 0.62
20 14 0.38
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (18 bp):
TTATTATTATCAACAATA
Found at i:33892708 original size:24 final size:24
Alignment explanation
Indices: 33892679--33892724 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
33892669 TTACCACCAC
33892679 TATTATCATTATCAACATTATTAT
1 TATTATCATTATCAACATTATTAT
* * *
33892703 TATTATCGTTTTCATCATTATT
1 TATTATCATTATCAACATTATT
33892725 GTCATTTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.13, G:0.02, T:0.54
Consensus pattern (24 bp):
TATTATCATTATCAACATTATTAT
Found at i:33898837 original size:93 final size:93
Alignment explanation
Indices: 33898678--33898849 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
33898668 GGATGGTTGA
* * * * * *
33898678 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACACGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACACATTGAGT
*
33898743 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * * *
33898771 GCATCCGAATTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACACATTGAGT
33898836 TGAGTCCAAGTTCG
66 TGAGTCCAAGTTCG
33898850 CTTATGGGCG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACACATTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:33910999 original size:38 final size:39
Alignment explanation
Indices: 33910923--33911074 Score: 239
Period size: 38 Copynumber: 4.1 Consensus size: 39
33910913 ATTCAAGACA
33910923 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
33910962 CTGGAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
33911000 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGG---C-T-
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
33911034 -TGGAAATGTATCCGGGCTAAAGT-CCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
33911071 CTGG
1 CTGG
33911075 TAATATAATT
Statistics
Matches: 105, Mismatches: 1, Indels: 15
0.87 0.01 0.12
Matches are distributed among these distances:
32 7 0.07
33 23 0.22
35 1 0.01
36 2 0.02
38 41 0.39
39 31 0.30
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:33911072 original size:71 final size:74
Alignment explanation
Indices: 33910923--33911074 Score: 247
Period size: 71 Copynumber: 2.1 Consensus size: 74
33910913 ATTCAAGACA
33910923 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGG--TCGT-CTGGAAATGTATCCGGGCTAAAGTCC
33910988 GCAGGCTTCGTG
63 GCAGGCTTCGTG
33911000 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGG-C-T-TGGAAATGTATCCGGGCTAAAGTCCGCA
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGTCGTCTGGAAATGTATCCGGGCTAAAGTCCGCA
*
33911062 GGCTTTGTG
66 GGCTTCGTG
33911071 CTGG
1 CTGG
33911075 TAATATAATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
71 40 0.54
73 1 0.01
74 1 0.01
77 32 0.43
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.24
Consensus pattern (74 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGTCGTCTGGAAATGTATCCGGGCTAAAGTCCGCA
GGCTTCGTG
Found at i:33913495 original size:46 final size:46
Alignment explanation
Indices: 33913444--33913544 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
33913434 TTCGACATGA
* *
33913444 ACTTACATGAATTATTCCTGTCTCCAATGCCATATATAT-ATTATGG
1 ACTTACATGAATCATTCCTGTCTCCAAAGCCATATATATGA-TATGG
* ** * *
33913490 GCTTACATGGCTCATTCCTGTCTCCAAAGCCGTATATTTGATATGG
1 ACTTACATGAATCATTCCTGTCTCCAAAGCCATATATATGATATGG
33913536 ACTTACATG
1 ACTTACATG
33913545 GCTCATTTCT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (46 bp):
ACTTACATGAATCATTCCTGTCTCCAAAGCCATATATATGATATGG
Found at i:33913545 original size:46 final size:46
Alignment explanation
Indices: 33913457--33913557 Score: 141
Period size: 46 Copynumber: 2.2 Consensus size: 46
33913447 TACATGAATT
* *
33913457 ATTCCTGTCTCCAATGCCATATATATATTATGGGCTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATATATTATGGACTTACATGGCTC
* *
33913503 ATTCCTGTCTCCAAAGCCGTATATTTGA-TATGGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATAT-ATTATGGACTTACATGGCTC
*
33913549 ATTTCTGTC
1 ATTCCTGTC
33913558 CTTTCCTGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 48 0.98
47 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
ATTCCTGTCTCCAAAGCCATATATATATTATGGACTTACATGGCTC
Found at i:33919485 original size:20 final size:20
Alignment explanation
Indices: 33919373--33919489 Score: 101
Period size: 20 Copynumber: 5.9 Consensus size: 20
33919363 TTGTATGAGA
* *
33919373 TTGCACTTCGATGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
*
33919393 TTGCACTTTGGTGCCTCT-A
1 TTGCACTTTGGTGCCTCTGT
* *
33919412 TTACACTTTGGTGTCTCTGT
1 TTGCACTTTGGTGCCTCTGT
* ** **
33919432 TTGCAATTCAGTGCCTCTAA
1 TTGCACTTTGGTGCCTCTGT
** *
33919452 TTGCACAATCGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
*
33919472 TTGCACTCTGGTGCCTCT
1 TTGCACTTTGGTGCCTCT
33919490 ATTAGCTTCT
Statistics
Matches: 73, Mismatches: 23, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
19 16 0.22
20 57 0.78
ACGTcount: A:0.13, C:0.27, G:0.20, T:0.40
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:33919486 original size:40 final size:39
Alignment explanation
Indices: 33919384--33919490 Score: 117
Period size: 40 Copynumber: 2.7 Consensus size: 39
33919374 TGCACTTCGA
** *
33919384 TGCCTCTGTTTGCACTTTGGTGCCTCT-ATTACACTTTGG
1 TGCCTCTGTTTGCAC-TTGGTGCCTCTAATTACACAATCG
* * * *
33919423 TGTCTCTGTTTGCAATTCAGTGCCTCTAATTGCACAATCG
1 TGCCTCTGTTTGCACTT-GGTGCCTCTAATTACACAATCG
33919463 TGCCTCTGTTTGCACTCTGGTGCCTCTA
1 TGCCTCTGTTTGCACT-TGGTGCCTCTA
33919491 TTAGCTTCTA
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.04
39 21 0.38
40 31 0.56
41 1 0.02
ACGTcount: A:0.13, C:0.27, G:0.20, T:0.40
Consensus pattern (39 bp):
TGCCTCTGTTTGCACTTGGTGCCTCTAATTACACAATCG
Found at i:33920798 original size:37 final size:37
Alignment explanation
Indices: 33920738--33920809 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
33920728 AGCTCAGATG
33920738 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
*
33920775 AAATCTCCACACGTAGTCT-TCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGT-TATCGGGTCTTACCCGGA
33920810 ATATATTTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
Found at i:33921009 original size:48 final size:48
Alignment explanation
Indices: 33920957--33921095 Score: 260
Period size: 48 Copynumber: 2.9 Consensus size: 48
33920947 CACATCTCCA
* *
33920957 ACATATTTCACACTAGCCCTTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
33921005 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
33921053 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
33921096 ATTTATCTTG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:33925402 original size:46 final size:47
Alignment explanation
Indices: 33925302--33925418 Score: 141
Period size: 46 Copynumber: 2.5 Consensus size: 47
33925292 GTCTTCGACA
** * * *
33925302 TGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATTAT
1 TGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATGAT
*
33925349 AGG-CTTACATGGCTCATTCCTGTCTCCAAAGCCATATAT-T-TGAT
1 TGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATGAT
*
33925393 GTGGACTTACATGGCTCATTTCTGTC
1 -TGGACTTACATGGCTCATTCCTGTC
33925419 CTGTCCTGTC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
44 3 0.05
45 3 0.05
46 52 0.87
47 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (47 bp):
TGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATGAT
Found at i:33930146 original size:45 final size:43
Alignment explanation
Indices: 33930046--33930169 Score: 119
Period size: 45 Copynumber: 2.8 Consensus size: 43
33930036 TTTTCTCAAA
* * *
33930046 TCACCGGCATT-TCGCCTGTTAGGATCAAGGCCCGATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGATATCAGT
*
33930088 TCATCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAT-T-AGTAT
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGATATCAG--T
** *
33930132 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGA
1 -TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGA
33930170 ATAATCAAGT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 12 0.18
43 13 0.19
44 11 0.16
45 32 0.47
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGATATCAGT
Found at i:33930539 original size:43 final size:43
Alignment explanation
Indices: 33930502--33930699 Score: 315
Period size: 43 Copynumber: 4.6 Consensus size: 43
33930492 CCGGCATTAC
* *
33930502 GCCTGCTAGGCACGAAGGCCCGAATATACATAACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
33930545 GCTTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
33930588 GCCTACTAGGCATGAAGGCCCGAATACACATCACCGGCACAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
33930631 GCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGTACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
33930674 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
33930700 TAATACCAGC
Statistics
Matches: 142, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 142 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:33936709 original size:5 final size:5
Alignment explanation
Indices: 33936699--33936732 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
33936689 CTAATTTGTG
33936699 AAAAT AAAAT AAAAT AAAACT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAA
33936733 GAACACAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:33936724 original size:16 final size:15
Alignment explanation
Indices: 33936699--33936732 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
33936689 CTAATTTGTG
33936699 AAAATAAAATAAAAT
1 AAAATAAAATAAAAT
33936714 AAAACTAAAATAAAAT
1 AAAA-TAAAATAAAAT
33936730 AAA
1 AAA
33936733 GAACACAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATAAAATAAAAT
Found at i:33937301 original size:12 final size:12
Alignment explanation
Indices: 33937284--33937314 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
33937274 TGTGCAATCC
33937284 CGTACAAGCGCT
1 CGTACAAGCGCT
*
33937296 CGTACAAGTGCT
1 CGTACAAGCGCT
33937308 CGTACAA
1 CGTACAA
33937315 ACCCTATTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (12 bp):
CGTACAAGCGCT
Found at i:33940109 original size:46 final size:45
Alignment explanation
Indices: 33940005--33940221 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 45
33939995 GCATATCTGT
* * ***
33940005 GCCGATGCCATGTCCTAGACATGGTCTTACACTGAC-AAATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTCTCG-AG
* *
33940051 GCTGATACATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCGAG
* * * *
33940097 GCCGAAGCATGTCCCAGACATGTCTTACACTAGCAATT-GTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC--TTCGTCTCGAG
* * * *
33940143 GCCGATGCCATGTCCCAGACATGGTATTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGT-CTCGAG
33940191 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
33940222 AGCTCACACA
Statistics
Matches: 139, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 12 0.09
45 14 0.10
46 62 0.45
47 29 0.21
48 21 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCGAG
Found at i:33942682 original size:15 final size:15
Alignment explanation
Indices: 33942664--33942693 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33942654 GGTGCTAGCA
33942664 TGAAAACACCTAAAG
1 TGAAAACACCTAAAG
*
33942679 TGAAAACAGCTAAAG
1 TGAAAACACCTAAAG
33942694 GGACTATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.13
Consensus pattern (15 bp):
TGAAAACACCTAAAG
Found at i:33943373 original size:47 final size:48
Alignment explanation
Indices: 33943228--33943587 Score: 223
Period size: 49 Copynumber: 7.6 Consensus size: 48
33943218 CTTGTGTGCC
* * * * *
33943228 AGTGTAAGA-CATGTCTGGGAAAT-GTATCAGCC-ACATTATGAGT-GCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTAGA-GATGA-TAGCT
* * ** * * *
33943274 AGTATAAGACCATGTCTAGGACATGGCATTGGGAC-AGAGACGAGTA-TT
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCAGCCTAGAGATGA-TAGCT
* * *
33943322 AGTGTAAGA-AATGTCTGGGACAT-GCATCAGCCTCGACGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTAGA-GATGATAGCT
* * * *
33943369 AGTGTAACA-CGTGTCTGGGACA-CGCATCAG-CTAAGAGTTG-T-GCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-AGAGATGATAGCT
* * * * * *
33943413 AGTGTAAGA-CACG-CTGGGACAT-GCATCAGTACATATATACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG--CCTAGAGATGATAGCT
* *
33943460 AGTGTAAGACCATGTCTGGGACATGGCATC-GACCTCGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CCTAGA-GATGATAGCT
* * *
33943509 AGTGTAAGACCATGTCTGGGACATGGTATCGGCCTTGATGATGATAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTAGA-GATGATAGCT
*
33943558 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
33943588 GACATTTTGT
Statistics
Matches: 244, Mismatches: 50, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
43 15 0.06
44 12 0.05
45 7 0.03
46 21 0.09
47 68 0.28
48 22 0.09
49 93 0.38
50 6 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTAGAGATGATAGCT
Found at i:33943513 original size:49 final size:48
Alignment explanation
Indices: 33943321--33943590 Score: 227
Period size: 49 Copynumber: 5.7 Consensus size: 48
33943311 AGACGAGTAT
* * *
33943321 TAGTGTAAGAAATGTCTGGGACAT-GCATC-AGCCTCGACGATGATAGC
1 TAGTGTAAGACATGTCTGGGACATGGCATCGA-CCTAGATGATGATAGC
* * * * * *
33943368 CAGTGTAACACGTGTCTGGGACA-CGCATC-AGCTAAGA-GTTG-T-GC
1 TAGTGTAAGACATGTCTGGGACATGGCATCGACCT-AGATGATGATAGC
* * * * *
33943412 TAGTGTAAGACACG-CTGGGACAT-GCATCAGTACATATAT-ACGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGGCATC-G-ACCTAGATGATGATAGC
*
33943459 TAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATAGC
1 TAGTGTAAGA-CATGTCTGGGACATGGCATCGACCTAGATGATGATAGC
* * * *
33943508 CAGTGTAAGACCATGTCTGGGACATGGTATCGGCCTTGATGATGATAGC
1 TAGTGTAAGA-CATGTCTGGGACATGGCATCGACCTAGATGATGATAGC
*
33943557 TAGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 TAGTGTAAGA-CATGTCTGGGACATGGCATCGAC
33943591 ATTTTGTCTC
Statistics
Matches: 179, Mismatches: 31, Indels: 24
0.76 0.13 0.10
Matches are distributed among these distances:
43 13 0.07
44 12 0.07
45 4 0.02
46 7 0.04
47 39 0.22
48 8 0.04
49 91 0.51
50 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
TAGTGTAAGACATGTCTGGGACATGGCATCGACCTAGATGATGATAGC
Found at i:33950387 original size:30 final size:30
Alignment explanation
Indices: 33950353--33950410 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
33950343 TTTTTGAGCA
* *
33950353 TAGGGGTAAAATGGTTATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTCATTTTGCCAAAGTT
*
33950383 TAGGGGCAAAATGGTCATTTTTCCAAAG
1 TAGGGGCAAAATGGTCATTTTGCCAAAG
33950411 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.10, G:0.26, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGCCAAAGTT
Found at i:33950971 original size:49 final size:49
Alignment explanation
Indices: 33950768--33951029 Score: 176
Period size: 47 Copynumber: 5.5 Consensus size: 49
33950758 AAGACATGTA
* * * * *
33950768 TAAGACCATGTTTAGGACATGGCATC-GGCACAGA-GATGAGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCAC-GATGATGAGAGCTAGTG
* * * * * *
33950816 TAA-AACATGACTGGGACAT-GCATCGGCCTCGACGATGATAGCCT-GTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAG-CTAGTG
* * * * * * *
33950863 TAAGA-CGTGTCTGAGACA-CGCATCAGCTAAGA-GTTGTG-G-TAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAGCTAGTG
33950907 TAAGA-CATGTCTGGGACAT-GCATCAG-CACGTAT-ATACGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCACG-ATGAT--GAGAGCTAGTG
* * *
33950955 TAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGATAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAGCTAGTG
33951004 TAAGACCATG-CTTGGGACATGGCATC
1 TAAGACCATGTC-TGGGACATGGCATC
33951030 GGCAACTTAT
Statistics
Matches: 168, Mismatches: 28, Indels: 35
0.73 0.12 0.15
Matches are distributed among these distances:
43 3 0.02
44 28 0.17
45 1 0.01
46 12 0.07
47 47 0.28
48 16 0.10
49 47 0.28
50 9 0.05
51 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGCATCAGCCACGATGATGAGAGCTAGTG
Found at i:33952812 original size:22 final size:22
Alignment explanation
Indices: 33952781--33952831 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
33952771 CTCCACGTAG
*
33952781 GAATTTTTTTT-TAAATTCATA
1 GAATTTTTTTTAAAAATTCATA
33952802 GAATTTTTTTTAAAAATTCATA
1 GAATTTTTTTTAAAAATTCATA
33952824 GAATTTTT
1 GAATTTTT
33952832 GTGAGCCGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (22 bp):
GAATTTTTTTTAAAAATTCATA
Found at i:33953057 original size:17 final size:17
Alignment explanation
Indices: 33953032--33953083 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
33953022 ACTCATCTCC
33953032 TTATATATATATTATAA
1 TTATATATATATTATAA
* *
33953049 TTATTTATAATACT-TAA
1 TTATATAT-ATATTATAA
*
33953066 TTATGT-TATATTATAA
1 TTATATATATATTATAA
33953082 TT
1 TT
33953084 TGATAGATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 4 0.14
16 6 0.21
17 15 0.52
18 4 0.14
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (17 bp):
TTATATATATATTATAA
Found at i:33954955 original size:24 final size:24
Alignment explanation
Indices: 33954856--33954956 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
33954846 AAGTCTGTCA
*
33954856 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
33954880 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
33954904 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
33954928 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
33954952 GGAGA
1 GGAGA
33954957 ACAGTGTTGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.33, C:0.02, G:0.41, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:33955929 original size:8 final size:8
Alignment explanation
Indices: 33955916--33955948 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
33955906 ATAGATCGGC
33955916 AAAAGCCG
1 AAAAGCCG
33955924 AAAAGCCG
1 AAAAGCCG
*
33955932 AAATGCCG
1 AAAAGCCG
33955940 AAAAGCCG
1 AAAAGCCG
33955948 A
1 A
33955949 CATTTTAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.24, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:33956421 original size:26 final size:27
Alignment explanation
Indices: 33956361--33956470 Score: 127
Period size: 26 Copynumber: 4.1 Consensus size: 27
33956351 AGGAAGCGTC
* *
33956361 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
**
33956388 CTTATGGCTCTGCC-C-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
33956414 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* **
33956441 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
33956467 CTGG
1 CTGG
33956471 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.03
26 34 0.48
27 33 0.46
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:33956463 original size:53 final size:53
Alignment explanation
Indices: 33956361--33956470 Score: 141
Period size: 53 Copynumber: 2.1 Consensus size: 53
33956351 AGGAAGCGTC
* * *
33956361 CTGGTGGCTATGCCACAATTATCTGATCTTATGGCTCTGCCCATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCACATATATCTGTT
* * * *
33956414 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCT-GCACATATATCTGTT
33956467 CTGG
1 CTGG
33956471 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
53 45 0.92
54 4 0.08
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCACATATATCTGTT
Done.