Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 101 of 344
Found at i:33962787 original size:24 final size:24
Alignment explanation
Indices: 33962688--33962788 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
33962678 AAGTCTGTCA
*
33962688 GGAGAGGATTTAGGAGTTAATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
*
33962712 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
*
33962736 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
* *
33962760 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGTTGATAAG
33962784 GGAGA
1 GGAGA
33962789 ACAGTGTTGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.34, C:0.01, G:0.40, T:0.26
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGTTGATAAG
Found at i:33964215 original size:27 final size:27
Alignment explanation
Indices: 33964175--33964285 Score: 154
Period size: 27 Copynumber: 4.1 Consensus size: 27
33964165 AGGAAGCGTC
* *
33964175 CTGGTGGCTATGCCACCATTATCTGAT
1 CTGGTGGCTCTGCCACCATTATCTGTT
33964202 CTGGTGGCTCTGCC-CCATATATCTGTT
1 CTGGTGGCTCTGCCACCAT-TATCTGTT
*
33964229 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACCATTATCTGTT
* *
33964256 CTGGTGACTCTGTCA-CATTATCTGTT
1 CTGGTGGCTCTGCCACCATTATCTGTT
33964282 CTGG
1 CTGG
33964286 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 18 0.24
27 55 0.72
28 3 0.04
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACCATTATCTGTT
Found at i:33982469 original size:16 final size:16
Alignment explanation
Indices: 33982448--33982479 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33982438 GTTGTAACTC
33982448 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
33982464 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
33982480 TCTTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:33983857 original size:28 final size:28
Alignment explanation
Indices: 33983796--33983857 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
33983786 CCAATCGGAC
33983796 CAAAATGGGCTGTTAGGCCCATAATGAG
1 CAAAATGGGCTGTTAGGCCCATAATGAG
*
33983824 CCAAATGGGCTGTTAGGCCCATAAT-AG
1 CAAAATGGGCTGTTAGGCCCATAATGAG
33983851 ACAAAAT
1 -CAAAAT
33983858 TTGATAATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 2 0.06
28 29 0.94
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (28 bp):
CAAAATGGGCTGTTAGGCCCATAATGAG
Found at i:33983942 original size:29 final size:28
Alignment explanation
Indices: 33983903--33984020 Score: 114
Period size: 29 Copynumber: 4.1 Consensus size: 28
33983893 GTGAGCATGT
*
33983903 ATATAAAGTGAATTGGGCCTAACGGGCC
1 ATATAAAGTGAATTGGGCCTAATGGGCC
* *
33983931 ATATAAAGGTGATTTGGACCTAATGGGCC
1 ATATAAA-GTGAATTGGGCCTAATGGGCC
* * *
33983960 ATATGAATGTGAATTGGGCCTGATGCGCC
1 ATAT-AAAGTGAATTGGGCCTAATGGGCC
* *
33983989 ATATAAA-TGAGATTCGACC-AAGTGGGCC
1 ATATAAAGTGA-ATTGGGCCTAA-TGGGCC
33984017 ATAT
1 ATAT
33984021 GCATGTATGT
Statistics
Matches: 73, Mismatches: 13, Indels: 8
0.78 0.14 0.09
Matches are distributed among these distances:
27 4 0.05
28 24 0.33
29 43 0.59
30 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (28 bp):
ATATAAAGTGAATTGGGCCTAATGGGCC
Found at i:33983980 original size:58 final size:57
Alignment explanation
Indices: 33983910--33984026 Score: 146
Period size: 58 Copynumber: 2.0 Consensus size: 57
33983900 TGTATATAAA
* * *
33983910 GTGAATTGGGCCTAACGGGCCATATAAAGGTGATTTGGACCTAA-TGGGCCATATGAAT
1 GTGAATTGGGCCTAACGCGCCATATAAAGGAGA-TTCGACC-AAGTGGGCCATATGAAT
* * * *
33983968 GTGAATTGGGCCTGATGCGCCATATAAATGAGATTCGACCAAGTGGGCCATATGCAT
1 GTGAATTGGGCCTAACGCGCCATATAAAGGAGATTCGACCAAGTGGGCCATATGAAT
33984025 GT
1 GT
33984027 ATGTAGGGGT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 2 0.04
57 21 0.41
58 28 0.55
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (57 bp):
GTGAATTGGGCCTAACGCGCCATATAAAGGAGATTCGACCAAGTGGGCCATATGAAT
Found at i:33984622 original size:5 final size:5
Alignment explanation
Indices: 33984614--33984640 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
33984604 TTGGGATGGG
33984614 ATTGC ATTGC ATTGC ATTGC ATTGC AT
1 ATTGC ATTGC ATTGC ATTGC ATTGC AT
33984641 GTTTGATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (5 bp):
ATTGC
Found at i:33993124 original size:37 final size:37
Alignment explanation
Indices: 33993074--33993152 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
33993064 TTATTACAAA
* * *
33993074 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
33993111 GTCTTACCCGGACAAAATCCCCACATGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
33993148 GTCTT
1 GTCTT
33993153 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:33993357 original size:47 final size:47
Alignment explanation
Indices: 33993270--33993706 Score: 658
Period size: 47 Copynumber: 9.2 Consensus size: 47
33993260 CCCTTCGGGA
* * * * **
33993270 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
33993317 CCTGTCACATATATACACTTTCACATTCATTACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
33993364 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
33993411 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
33993460 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
33993507 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
33993556 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
33993603 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
33993651 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
33993698 CTTATCACA
1 CTTATCACA
33993707 ATTTAGAATT
Statistics
Matches: 356, Mismatches: 29, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 224 0.63
48 45 0.13
49 87 0.24
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:33993473 original size:96 final size:95
Alignment explanation
Indices: 33993270--33993708 Score: 666
Period size: 96 Copynumber: 4.6 Consensus size: 95
33993260 CCCTTCGGGA
** * * * * * *
33993270 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
*
33993334 CTTTCACATTCATTACATCGGCCATTAAGC
66 CTTTCACATTCATCACATCGGCCATTAAGC
* *
33993364 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
33993429 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
33993460 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
33993525 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
33993556 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCAC-ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACAATATATAC
33993620 ACTTTCACATTCATCACATCGGCCATTAAGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
*
33993651 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
33993709 TTAGAATTCA
Statistics
Matches: 319, Mismatches: 22, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
94 49 0.15
95 90 0.28
96 176 0.55
97 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAAGC
Found at i:33993482 original size:143 final size:143
Alignment explanation
Indices: 33993270--33993706 Score: 702
Period size: 143 Copynumber: 3.1 Consensus size: 143
33993260 CCCTTCGGGA
* * * * *
33993270 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
* **
33993333 ACTTTCACATTCATTACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
*
33993398 TCGGCCATTAAGC
131 TCGGCCATTAGGC
* * * *
33993411 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
33993476 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--ATATATACACTTTCACATTCATCA
33993541 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
33993556 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA-TCACATATATA
33993619 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCAC
65 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCAC
33993684 ATCGGCCATTAGGC
130 ATCGGCCATTAGGC
33993698 CTTATCACA
1 CTTATCACA
33993707 ATTTAGAATT
Statistics
Matches: 273, Mismatches: 17, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
141 10 0.04
142 48 0.18
143 122 0.45
144 49 0.18
145 44 0.16
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:34003043 original size:18 final size:18
Alignment explanation
Indices: 34003010--34003047 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
34003000 GAGTTCGTAC
*
34003010 TTTGGCCCATTTTCTCTGT
1 TTTGGCCCAGTTTCTC-GT
34003029 TTTGGCCC-GTTTCTCGT
1 TTTGGCCCAGTTTCTCGT
34003046 TT
1 TT
34003048 CTTTTGCTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 6 0.33
19 8 0.44
ACGTcount: A:0.03, C:0.26, G:0.18, T:0.53
Consensus pattern (18 bp):
TTTGGCCCAGTTTCTCGT
Found at i:34006103 original size:40 final size:40
Alignment explanation
Indices: 34006029--34006250 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
34006019 AACCCAAGTA
* * *
34006029 CCTTCGGGATTTAG-CCGAATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
34006068 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
34006108 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
34006148 CCTTCGGGACTTACCCCGGATATAGTCAATAGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
34006188 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
34006228 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
34006251 CATTCGAATA
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 154 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:34009162 original size:29 final size:29
Alignment explanation
Indices: 34009102--34009220 Score: 109
Period size: 29 Copynumber: 4.1 Consensus size: 29
34009092 TGTGAGCATG
*
34009102 TATATAAGGTGATTTGGGCCTAACT-GGCCA
1 TATA-AAGGTGATTTGGGCCTGA-TGGGCCA
* *
34009132 TATAAAGGTGATTTGGGCTTGATGGGTCA
1 TATAAAGGTGATTTGGGCCTGATGGGCCA
* * *
34009161 TATGAATGTGAATTGGGCCTGATGGGCCA
1 TATAAAGGTGATTTGGGCCTGATGGGCCA
* * *
34009190 TATAAATGAGA-TTGGGCC-AAGTGGGCCA
1 TATAAAGGTGATTTGGGCCTGA-TGGGCCA
34009218 TAT
1 TAT
34009221 GCCTGTATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 18 0.24
29 53 0.70
30 4 0.05
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
TATAAAGGTGATTTGGGCCTGATGGGCCA
Found at i:34011799 original size:40 final size:40
Alignment explanation
Indices: 34011705--34011849 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
34011695 TACTCGAATG
*
34011705 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
34011746 ACATTCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
34011786 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
34011826 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
34011850 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:34015482 original size:50 final size:50
Alignment explanation
Indices: 34015305--34015537 Score: 271
Period size: 49 Copynumber: 4.7 Consensus size: 50
34015295 ATCTATTGTG
*
34015305 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
34015355 CGCCG-CAC--GTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTT
1 AG--GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATAA-TT
* ** **
34015405 CA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 -AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
34015455 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
34015505 -GGTCGCATGTGTATTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
34015538 TGCGTACTAG
Statistics
Matches: 153, Mismatches: 20, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
49 68 0.44
50 49 0.32
51 35 0.23
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:34016597 original size:22 final size:22
Alignment explanation
Indices: 34016569--34016612 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
34016559 GAGTGGCATG
34016569 TATAGGGACCTAGTTTTATAAC
1 TATAGGGACCTAGTTTTATAAC
34016591 TATAGGGACCTAGTTTTATAAC
1 TATAGGGACCTAGTTTTATAAC
34016613 ATGTGTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (22 bp):
TATAGGGACCTAGTTTTATAAC
Found at i:34019747 original size:21 final size:21
Alignment explanation
Indices: 34019721--34019765 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
34019711 GAGTTTGATA
34019721 TAATTCTGGGTATGGATTGGC
1 TAATTCTGGGTATGGATTGGC
34019742 TAATTCTGGGTATGGATTGGC
1 TAATTCTGGGTATGGATTGGC
34019763 TAA
1 TAA
34019766 CTTTGCATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.09, G:0.31, T:0.38
Consensus pattern (21 bp):
TAATTCTGGGTATGGATTGGC
Found at i:34025205 original size:39 final size:41
Alignment explanation
Indices: 34025134--34025355 Score: 138
Period size: 40 Copynumber: 5.5 Consensus size: 41
34025124 CTCGTTCAAG
* * * *
34025134 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA
* * *
34025173 TGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCGCGAA
1 TGCCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA
* * * * *
34025213 TGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA
* * * *
34025253 GGCCTTCGGGGACTTAACCCGGAATTA-A-TAACTCGCACAAA
1 TGCCTTC-GGGACTTAACCCGG-ATTATAGAAACTCACACGAA
** ** *
34025294 TGCCTTC-GGATCTTAGTCCGGA-TATAGTCACTTAGCAC-AA
1 TGCCTTCGGGA-CTTAACCCGGATTATAGAAACTCA-CACGAA
* *
34025334 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
34025356 CAGCATTCAA
Statistics
Matches: 149, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
38 2 0.01
39 32 0.21
40 74 0.50
41 38 0.26
42 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
TGCCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA
Found at i:34025274 original size:41 final size:39
Alignment explanation
Indices: 34025171--34025355 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 39
34025161 TAACTCATAC
* * * *
34025171 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCGCG
1 AATGCCTTCGGGACTTAACCCGGA-ATTATAACTCGCACA
*
34025211 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-TAACTCGCACA
*
34025251 AAGGCCTTCGGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTC-GGGACTTAACCCGGAATT-ATAACTCGCACA
** * *
34025292 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TA-TAAC-TCGCACA
*
34025333 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34025356 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
39 9 0.07
40 66 0.54
41 47 0.38
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTATAACTCGCACA
Found at i:34025315 original size:81 final size:80
Alignment explanation
Indices: 34025134--34025355 Score: 222
Period size: 81 Copynumber: 2.8 Consensus size: 80
34025124 CTCGTTCAAG
* * * * * * * *
34025134 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-TACAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGATAT
* *
34025198 TAAAACTCGCGCGAA
66 TAAAACTCGCACAAA
*
34025213 TGCCTTCGGGACTTAACCCGGA-ATTAGT-A-TCTCGCACAAAGGCCTTCGGGGACTTAACCCGG
1 TGCCTTCGGGACTTAACCCGGATA-TAGTCACT-TAGCACAAA-GCCTTC-GGGACTTAACCCGG
34025275 A-ATTAATAACTCGCACAAA
62 ATATTAA-AACTCGCACAAA
** *
34025294 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
34025356 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 14, Indels: 19
0.78 0.09 0.12
Matches are distributed among these distances:
77 1 0.01
78 2 0.02
79 27 0.23
80 27 0.23
81 51 0.43
82 10 0.08
83 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGATAT
TAAAACTCGCACAAA
Found at i:34033118 original size:39 final size:41
Alignment explanation
Indices: 34033047--34033267 Score: 136
Period size: 40 Copynumber: 5.5 Consensus size: 41
34033037 CTCGTTCAAG
* * * *
34033047 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA
* * *
34033086 TGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCGCGAA
1 TGCCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA
* * * ** *
34033126 TGCCTTCGGGACTTAACCCGGAAT-TAGTATCTTGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA
* * * *
34033166 GGCCTTCGGGACTTAACCCGGAATTA-A-TAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAGAAACTCACACGAA
** ** *
34033206 TGCCTTC-GGATCTTAGTCCGGA-TATAGTCACTTAGCAC-AA
1 TGCCTTCGGGA-CTTAACCCGGATTATAGAAACTCA-CACGAA
* *
34033246 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
34033268 CAGCATTCAA
Statistics
Matches: 147, Mismatches: 25, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
38 2 0.01
39 32 0.22
40 104 0.71
41 9 0.06
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
TGCCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAA
Found at i:34033198 original size:80 final size:80
Alignment explanation
Indices: 34033082--34033267 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
34033072 AGTAACTCAT
* * * *
34033082 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCGCGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
34033146 GA-ATTAGT-ATCTT-GC
65 GATA-TAGTCA-CTTAGC
**
34033161 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
34033225 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
34033242 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
34033268 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 74 0.79
81 9 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:34033227 original size:40 final size:40
Alignment explanation
Indices: 34033084--34033267 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
34033074 TAACTCATAC
* * *
34033084 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCGCG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* * *
34033124 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTTGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
34033164 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
34033204 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
34033245 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34033268 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 102 0.84
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:34047513 original size:46 final size:46
Alignment explanation
Indices: 34047463--34047638 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 46
34047453 TGTTTGGGCA
* *
34047463 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
*** * ** ** *
34047509 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* *
34047556 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
34047602 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34047639 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:34047618 original size:93 final size:93
Alignment explanation
Indices: 34047459--34047630 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
34047449 AGGATGTTTG
* *
34047459 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
34047524 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* ** *
34047552 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
34047617 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
34047631 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:34054729 original size:27 final size:27
Alignment explanation
Indices: 34054698--34054875 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
34054688 TAAATTGTAC
* *
34054698 AGCACTAAGTGTGTGATTTCACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34054725 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34054751 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34054779 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34054807 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34054834 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34054861 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34054876 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34054812 original size:82 final size:81
Alignment explanation
Indices: 34054699--34054854 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
34054689 AAATTGTACA
* * *
34054699 GCACTAAGTGTGTGATTTCACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTCACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34054763 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
34054780 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTCACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34054845 TGCGAGTTGA
65 TGCGAATTGA
34054855 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 14 0.22
82 50 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTCACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34054866 original size:82 final size:81
Alignment explanation
Indices: 34054695--34054875 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
34054685 GATTAAATTG
* * *
34054695 TACAGCACTAAGTGTGTGATTTCACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTCACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34054760 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
34054776 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTCACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34054840 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34054858 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34054876 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTCACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34074528 original size:15 final size:15
Alignment explanation
Indices: 34074505--34074564 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
34074495 GTATCATATC
*
34074505 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
34074520 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * * *
34074535 CTGGGTTTCTCTATC
1 TTGGATTTCTTTATT
34074550 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
34074565 CATTTTTCTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:34074542 original size:30 final size:30
Alignment explanation
Indices: 34074506--34074565 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
34074496 TATCATATCT
* *
34074506 TGGGTTTCTTTATTTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
34074536 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
34074566 ATTTTTCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.10, C:0.13, G:0.17, T:0.60
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:34080312 original size:36 final size:36
Alignment explanation
Indices: 34080272--34080344 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
34080262 GTTTAATTCT
34080272 AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
1 AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
34080308 AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
1 AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
34080344 A
1 A
34080345 GCCTTACTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.38
Consensus pattern (36 bp):
AAAGTCAACTTAATTATTTGTTAACCATTTTAAACC
Found at i:34080870 original size:32 final size:32
Alignment explanation
Indices: 34080825--34080912 Score: 133
Period size: 32 Copynumber: 2.8 Consensus size: 32
34080815 CAACCCATCA
* * *
34080825 CAATCTCAATTGGGCCTAACCCATCAT-AGAAT
1 CAATATCAGTTGGGCCTAACCCAT-ATCAGAAG
34080857 CAATATCAGTTGGGCCTAACCCATATCAGAAG
1 CAATATCAGTTGGGCCTAACCCATATCAGAAG
34080889 CAATATCAGTTGGGCCTAACCCAT
1 CAATATCAGTTGGGCCTAACCCAT
34080913 TTCAATATCA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
31 2 0.04
32 50 0.96
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (32 bp):
CAATATCAGTTGGGCCTAACCCATATCAGAAG
Found at i:34080884 original size:26 final size:26
Alignment explanation
Indices: 34080855--34080922 Score: 73
Period size: 32 Copynumber: 2.4 Consensus size: 26
34080845 CCATCATAGA
34080855 ATCAATATCAGTTGGGCCTAACCCAT
1 ATCAATATCAGTTGGGCCTAACCCAT
34080881 ATCAGAAGCAATATCAGTTGGGCCTAACCCAT
1 AT------CAATATCAGTTGGGCCTAACCCAT
*
34080913 TTCAATATCA
1 ATCAATATCA
34080923 AACCCATATG
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
26 10 0.29
32 25 0.71
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
ATCAATATCAGTTGGGCCTAACCCAT
Found at i:34084933 original size:42 final size:43
Alignment explanation
Indices: 34084871--34084965 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
34084861 ATGATTTATT
* * * * * *
34084871 TGTAAGACCATGTCTTGGACATTGGCATCG-TATTTGATTTCA
1 TGTAAGACCATATCTGGGACAGTGCCATCGATAATTGATTACA
*
34084913 TGTAAGACCCTATCTGGGACAGTGCCATCGATAATTGATTACA
1 TGTAAGACCATATCTGGGACAGTGCCATCGATAATTGATTACA
34084956 TGTAAGACCA
1 TGTAAGACCA
34084966 CGTCTAGGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACAGTGCCATCGATAATTGATTACA
Found at i:34090991 original size:28 final size:28
Alignment explanation
Indices: 34090940--34091053 Score: 106
Period size: 33 Copynumber: 3.9 Consensus size: 28
34090930 AGAATAACAC
*
34090940 AGTCTGGGCCTAAG-CCTAGATCAGTAAT
1 AGTCTGGGCCTAAGCCCTATA-CAGTAAT
* *
34090968 AGTTTGGGCCTAAGCCCTATTCAGTATCAGT
1 AGTCTGGGCCTAAGCCCTATACAGTA--A-T
*
34090999 ACAGTCTGGGCCTTAGCCCTATACAGTAAT
1 --AGTCTGGGCCTAAGCCCTATACAGTAAT
* *
34091029 AGTGT-GGCCTAAGCCCAATACAGTA
1 AGTCTGGGCCTAAGCCCTATACAGTA
34091054 TCAATACAGA
Statistics
Matches: 71, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
27 18 0.25
28 22 0.31
29 4 0.06
30 2 0.03
31 2 0.03
33 23 0.32
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (28 bp):
AGTCTGGGCCTAAGCCCTATACAGTAAT
Found at i:34091062 original size:60 final size:61
Alignment explanation
Indices: 34090938--34091062 Score: 173
Period size: 60 Copynumber: 2.1 Consensus size: 61
34090928 AGAGAATAAC
* * * *
34090938 ACAGTCTGGGCCTAAGCCTAGATCAGTAATAGTTTGGGCCTAAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCTAGATCAGTAATAGTGTGGGCCTAAGCCCAATACAGTATCAAT
* *
34090999 ACAGTCTGGGCCTTAGCCCTATA-CAGTAATAGTGT-GGCCTAAGCCCAATACAGTATCAAT
1 ACAGTCTGGGCCTAAG-CCTAGATCAGTAATAGTGTGGGCCTAAGCCCAATACAGTATCAAT
34091059 ACAG
1 ACAG
34091063 AGCAATGCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
60 26 0.46
61 26 0.46
62 5 0.09
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (61 bp):
ACAGTCTGGGCCTAAGCCTAGATCAGTAATAGTGTGGGCCTAAGCCCAATACAGTATCAAT
Found at i:34101182 original size:43 final size:42
Alignment explanation
Indices: 34101029--34101183 Score: 120
Period size: 43 Copynumber: 3.6 Consensus size: 42
34101019 TGTTTTCGTA
* *
34101029 TAAGACCACATCTGGGACGTTGGCATCGAGT-TATGATTTATGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGA-TAT-TGA-TTACGTG
* * * *** *
34101073 TAAGACCATGTCTTGGACATCAACATC-ATATTGGATTTCGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGATATT-GATTACGTG
* *
34101115 TAAGACC-CTGTCTAGGACAG-TGGCATCGATAATTGATTACATG
1 TAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-ATTGATTACGTG
34101158 TAAGACCACGTCTGGGACGTTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
34101184 TGTACAAGCT
Statistics
Matches: 85, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
42 27 0.32
43 34 0.40
44 24 0.28
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACGTTGGCATCGATATTGATTACGTG
Found at i:34103483 original size:35 final size:35
Alignment explanation
Indices: 34103437--34103529 Score: 132
Period size: 35 Copynumber: 2.7 Consensus size: 35
34103427 ACTGATACTT
* *
34103437 TGATTTGCATGTTAAGCATGCTATTATTATTATTA
1 TGATTCGCATGTTAAGCATGCTATTATTATGATTA
* * *
34103472 TGATTCGCATGTTGACCATGCTATTATTATGATTC
1 TGATTCGCATGTTAAGCATGCTATTATTATGATTA
*
34103507 TGAATCGCATGTTAAGCATGCTA
1 TGATTCGCATGTTAAGCATGCTA
34103530 CTGTGTTAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (35 bp):
TGATTCGCATGTTAAGCATGCTATTATTATGATTA
Found at i:34106729 original size:25 final size:25
Alignment explanation
Indices: 34106701--34106783 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
34106691 ATTTTCTGGG
* * *
34106701 AAGCCTATGTGGTGACTTCTCTAGA
1 AAGCCTTTGTGGTGAATACTCTAGA
* *
34106726 AAGCCTTTGTAGTGAATCCTCTAGA
1 AAGCCTTTGTGGTGAATACTCTAGA
* **
34106751 AATCCTTTGTGGCAAATACTCTAGA
1 AAGCCTTTGTGGTGAATACTCTAGA
34106776 AAGCCTTT
1 AAGCCTTT
34106784 ATGACGAATT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (25 bp):
AAGCCTTTGTGGTGAATACTCTAGA
Found at i:34108572 original size:28 final size:28
Alignment explanation
Indices: 34108541--34108683 Score: 141
Period size: 28 Copynumber: 5.1 Consensus size: 28
34108531 AAGCATGGAG
* *
34108541 ATAATGTGATTTGGG-CTGGATGGGTCAT
1 ATAATGTGAATTGGGCCT-GATGGGCCAT
* * *
34108569 ATAAATG-AAATTGGGCCTGACGGGACAT
1 AT-AATGTGAATTGGGCCTGATGGGCCAT
34108597 ATGAATGTGAATTGGGCCTGATGGGCCAT
1 AT-AATGTGAATTGGGCCTGATGGGCCAT
* *
34108626 ATAACGTGAATTGGGCCAGATGGGCCAT
1 ATAATGTGAATTGGGCCTGATGGGCCAT
*
34108654 ATAA-ATGAGATTGGGCCT-AGTGGGCCAT
1 ATAATGTGA-ATTGGGCCTGA-TGGGCCAT
34108682 AT
1 AT
34108684 GCATGTATGT
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
27 4 0.04
28 68 0.69
29 26 0.27
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (28 bp):
ATAATGTGAATTGGGCCTGATGGGCCAT
Found at i:34108613 original size:57 final size:56
Alignment explanation
Indices: 34108543--34108683 Score: 144
Period size: 57 Copynumber: 2.5 Consensus size: 56
34108533 GCATGGAGAT
* * * *
34108543 AATGTGATTTGGGCTGGATGGGTCATATAA-ATGAAATTGGGCCTGACGGGACATATG
1 AATGTGAATTGGGCT-GATGGGCCATATAACATG-AATTGGGCCAGACGGGACATATA
* * *
34108600 AATGTGAATTGGGCCTGATGGGCCATATAACGTGAATTGGGCCAGATGGGCCATATA
1 AATGTGAATTGGG-CTGATGGGCCATATAACATGAATTGGGCCAGACGGGACATATA
*
34108657 AATGAG-ATTGGGCCT-AGTGGGCCATAT
1 AATGTGAATTGGG-CTGA-TGGGCCATAT
34108684 GCATGTATGT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
55 1 0.01
56 19 0.26
57 49 0.67
58 4 0.05
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (56 bp):
AATGTGAATTGGGCTGATGGGCCATATAACATGAATTGGGCCAGACGGGACATATA
Found at i:34109793 original size:17 final size:17
Alignment explanation
Indices: 34109756--34109793 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
34109746 TCATATCTTG
34109756 AAAAAAGGTTTTCAATA
1 AAAAAAGGTTTTCAATA
34109773 AAAACAAGGTTTTCAATA
1 AAAA-AAGGTTTTCAATA
34109791 AAA
1 AAA
34109794 TACTTCAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (17 bp):
AAAAAAGGTTTTCAATA
Found at i:34117791 original size:12 final size:12
Alignment explanation
Indices: 34117776--34117801 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34117766 ATCATCCTCT
34117776 TCATCAGATTCA
1 TCATCAGATTCA
34117788 TCATCAGATTCA
1 TCATCAGATTCA
34117800 TC
1 TC
34117802 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:34119607 original size:9 final size:9
Alignment explanation
Indices: 34119584--34119775 Score: 73
Period size: 9 Copynumber: 22.1 Consensus size: 9
34119574 TATGTATTAC
*
34119584 GTAAGTTAA
1 GTAAGTTAT
* *
34119593 GAAAGTTTT
1 GTAAGTTAT
34119602 GTAAGTTAT
1 GTAAGTTAT
34119611 GTAAGTTAT
1 GTAAGTTAT
* *
34119620 GATATGATAT
1 G-TAAGTTAT
* *
34119630 -AAATTTAT
1 GTAAGTTAT
*
34119638 GTAAGGTAT
1 GTAAGTTAT
34119647 GTAAGTTAT
1 GTAAGTTAT
*
34119656 GTAAATTAT
1 GTAAGTTAT
* * **
34119665 AATATGAAAT
1 -GTAAGTTAT
* *
34119675 AT-ATTTAT
1 GTAAGTTAT
*
34119683 GT-A-TTAC
1 GTAAGTTAT
34119690 GTAAGTTAT
1 GTAAGTTAT
34119699 GTAAGTTAT
1 GTAAGTTAT
*
34119708 -TATA-TGAT
1 GTA-AGTTAT
* *
34119716 ATATATTTAT
1 GTA-AGTTAT
*
34119726 GT-A-CTAT
1 GTAAGTTAT
34119733 GTAAGTTAT
1 GTAAGTTAT
34119742 GTAAGTTAT
1 GTAAGTTAT
* *
34119751 AT-ATTTAT
1 GTAAGTTAT
34119759 GT-A-TTAT
1 GTAAGTTAT
34119766 GTAAGTTAT
1 GTAAGTTAT
34119775 G
1 G
34119776 ATGTCATGTA
Statistics
Matches: 135, Mismatches: 36, Indels: 24
0.69 0.18 0.12
Matches are distributed among these distances:
7 16 0.12
8 24 0.18
9 81 0.60
10 14 0.10
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:34119713 original size:43 final size:43
Alignment explanation
Indices: 34119601--34119754 Score: 211
Period size: 43 Copynumber: 3.6 Consensus size: 43
34119591 AAGAAAGTTT
* * *
34119601 TGTAAGTTATGTAAGTTATGATATGATATAAATTTATGTAAGGTA
1 TGTAAGTTATGTAAGTTATTATATGATATATATTTATGT-A-CTA
* * * *
34119646 TGTAAGTTATGTAAATTATAATATGAAATATATTTATGTATTA
1 TGTAAGTTATGTAAGTTATTATATGATATATATTTATGTACTA
*
34119689 CGTAAGTTATGTAAGTTATTATATGATATATATTTATGTACTA
1 TGTAAGTTATGTAAGTTATTATATGATATATATTTATGTACTA
34119732 TGTAAGTTATGTAAGTTA-TATAT
1 TGTAAGTTATGTAAGTTATTATAT
34119755 TTATGTATTA
Statistics
Matches: 98, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
42 5 0.05
43 57 0.58
44 1 0.01
45 35 0.36
ACGTcount: A:0.38, C:0.01, G:0.16, T:0.45
Consensus pattern (43 bp):
TGTAAGTTATGTAAGTTATTATATGATATATATTTATGTACTA
Found at i:34119757 original size:33 final size:35
Alignment explanation
Indices: 34119696--34119775 Score: 121
Period size: 33 Copynumber: 2.4 Consensus size: 35
34119686 TTACGTAAGT
34119696 TATGTAAGTTAT-TATATGATATATATTTATGTAC
1 TATGTAAGTTATGTATATGATATATATTTATGTAC
* *
34119730 TATGTAAGTTATGTA-A-GTTATATATTTATGTAT
1 TATGTAAGTTATGTATATGATATATATTTATGTAC
34119763 TATGTAAGTTATG
1 TATGTAAGTTATG
34119776 ATGTCATGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
33 28 0.65
34 13 0.30
35 2 0.05
ACGTcount: A:0.34, C:0.01, G:0.15, T:0.50
Consensus pattern (35 bp):
TATGTAAGTTATGTATATGATATATATTTATGTAC
Found at i:34119784 original size:24 final size:24
Alignment explanation
Indices: 34119738--34119787 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
34119728 ACTATGTAAG
* *
34119738 TTATGTAAGTTATATATTTATGTA
1 TTATGTAAGTTATATAGTCATGTA
34119762 TTATGTAAGTTATGAT-GTCATGTA
1 TTATGTAAGTTAT-ATAGTCATGTA
34119786 TT
1 TT
34119788 TAATTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.30, C:0.02, G:0.16, T:0.52
Consensus pattern (24 bp):
TTATGTAAGTTATATAGTCATGTA
Found at i:34119819 original size:15 final size:14
Alignment explanation
Indices: 34119789--34119822 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
34119779 TCATGTATTT
*
34119789 AATTATTTTAATTA
1 AATTATTTTAAATA
34119803 AATTATATTTAAATA
1 AATTAT-TTTAAATA
34119818 AATTA
1 AATTA
34119823 ATCCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTATTTTAAATA
Found at i:34119978 original size:15 final size:15
Alignment explanation
Indices: 34119960--34120014 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
34119950 AAAAATTTAT
34119960 TTTAATTAAATAATA
1 TTTAATTAAATAATA
34119975 TTT-A-TAAA-AATTA
1 TTTAATTAAATAA-TA
34119988 TTTTAATTAAATAATA
1 -TTTAATTAAATAATA
*
34120004 TTTAAATAAAT
1 TTTAATTAAAT
34120015 TAATCCAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.18
14 4 0.12
15 14 0.41
16 6 0.18
17 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTTAATTAAATAATA
Found at i:34119983 original size:29 final size:29
Alignment explanation
Indices: 34119950--34120016 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
34119940 ATCACCTGGA
34119950 AAAAATTTATTTTAATTAAATAATATTTAT
1 AAAAA-TTATTTTAATTAAATAATATTTAT
34119980 AAAAATTATTTTAATTAAATAATATTTA-
1 AAAAATTATTTTAATTAAATAATATTTAT
34120008 AATAAATTA
1 AA-AAATTA
34120017 ATCCAAATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
28 2 0.06
29 29 0.81
30 5 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
AAAAATTATTTTAATTAAATAATATTTAT
Found at i:34120005 original size:16 final size:16
Alignment explanation
Indices: 34119957--34120006 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
34119947 GGAAAAAATT
34119957 TATTTTAATTAAATAA
1 TATTTTAATTAAATAA
34119973 TA-TTT-A-TAAA-AA
1 TATTTTAATTAAATAA
34119985 TTATTTTAATTAAATAA
1 -TATTTTAATTAAATAA
34120002 TATTT
1 TATTT
34120007 AAATAAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 2 0.07
13 6 0.21
14 4 0.14
15 4 0.14
16 11 0.38
17 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTTTAATTAAATAA
Found at i:34120033 original size:39 final size:39
Alignment explanation
Indices: 34119982--34120072 Score: 157
Period size: 39 Copynumber: 2.4 Consensus size: 39
34119972 ATATTTATAA
*
34119982 AAATTATTTTAATTAAATAATATTTAAATAAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
*
34120021 AAATTATATTAATTAATTAATATTTAAATAAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
34120060 AAATTATA-TAATT
1 AAATTATATTAATT
34120073 TAAAAAATTG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 5 0.10
39 45 0.90
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (39 bp):
AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
Found at i:34120036 original size:19 final size:19
Alignment explanation
Indices: 34120012--34120072 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
34120002 TATTTAAATA
34120012 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
* * *
34120031 AATTAAT-TAATATTTAAATA
1 AATTAATCCAA-A-TTATATT
34120051 AATTAATCCAAATTATA-T
1 AATTAATCCAAATTATATT
34120069 AATT
1 AATT
34120073 TAAAAAATTG
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
18 6 0.18
19 12 0.36
20 13 0.39
21 2 0.06
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.43
Consensus pattern (19 bp):
AATTAATCCAAATTATATT
Found at i:34120057 original size:20 final size:20
Alignment explanation
Indices: 34119992--34120057 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
34119982 AAATTATTTT
*
34119992 AATTAAATAATATTTAAATA
1 AATTAATTAATATTTAAATA
* * *
34120012 AATTAATCCAA-A-TTATATT
1 AATTAAT-TAATATTTAAATA
34120031 AATTAATTAATATTTAAATA
1 AATTAATTAATATTTAAATA
34120051 AATTAAT
1 AATTAAT
34120058 CCAAATTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 2 0.06
19 13 0.36
20 19 0.53
21 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTAATTAATATTTAAATA
Found at i:34120075 original size:19 final size:19
Alignment explanation
Indices: 34120009--34120075 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
34119999 TAATATTTAA
34120009 ATAAATTAATCCAAATTAT
1 ATAAATTAATCCAAATTAT
* * *
34120028 ATTAATTAAT-TAATATTTAA
1 ATAAATTAATCCAA-A-TTAT
34120048 ATAAATTAATCCAAATTAT
1 ATAAATTAATCCAAATTAT
*
34120067 ATAATTTAA
1 ATAAATTAA
34120076 AAAATTGTGT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
18 2 0.05
19 21 0.55
20 13 0.34
21 2 0.05
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (19 bp):
ATAAATTAATCCAAATTAT
Found at i:34120207 original size:235 final size:232
Alignment explanation
Indices: 34119789--34120502 Score: 1177
Period size: 235 Copynumber: 3.1 Consensus size: 232
34119779 TCATGTATTT
*
34119789 AATTATTTTAATTAAATT-ATATTTAAATAAATTAATCCAAATTATATAA-TTAAAAAATTGTGT
1 AATTATATTAATT-AATTAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGT
* *
34119852 ATAAAAAAGTAGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTTGGAAAAAAAATAATAAA
65 ATAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCC-TGGAGAAAAAATAATAAA
* *
34119917 AATAAAATTTAACGATGTGGAAAATCACCTGGAAAAAATTTATTTTAATTAAATAATATTTATAA
129 AATAAAATTTGACGATGTGGAAAATCACATGG-AAAAATTTATTTTAATTAAATAATATTTATAA
34119982 AAATTATTTTAATTAAATAATATTTAAATAAATTAATCCA
193 AAATTATTTTAATTAAATAATATTTAAATAAATTAATCCA
34120022 AATTATATTAATTAATTAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTA
1 AATTATATTAATTAATTAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTA
* *
34120087 TAAAAAAGTCTAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTAGGAGAAAGAAATAATTAA
66 TAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCT-GGAGAAA-AAATAATAAA
34120152 AATAAAATTTGACGATGTGGAAAATCACATGGTAAAAATTTATTTTAATTAAATAATATTTATAA
129 AATAAAATTTGACGATGTGGAAAATCACATGG-AAAAATTTATTTTAATTAAATAATATTTATAA
**
34120217 AAATTATTTTAATTAAATAATATTTAAATAAATTAATAAA
193 AAATTATTTTAATTAAATAATATTTAAATAAATTAATCCA
*
34120257 AATTATATTAATT-ATATAATATTTAAATAAATTAATCTAAATTATATAATTTAAAAAAATTGTG
1 AATTATATTAATTAAT-TAATATTTAAATAAATTAATCCAAATTATATAATTT-AAAAAATTGTG
* *
34120321 TATAAAAAAGTCGAAAACCGTATGAGATGAAATGTCAACTTTGTTCCTTG-GAAAAAATAATAAA
64 TATAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTGGAGAAAAAATAATAAA
* *
34120385 AATAAAATTTGACAATGTGCAAAATCACATGGAAAAATTTTTATTTTAATTAAATAATATTTATA
129 AATAAAATTTGACGATGTGGAAAATCACATGGAAAAA--TTTATTTTAATTAAATAATATTTATA
34120450 AAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCA
192 AAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCA
34120491 AATTATA-TAATT
1 AATTATATTAATT
34120503 TAAAATAAGA
Statistics
Matches: 454, Mismatches: 19, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
232 9 0.02
233 88 0.19
234 142 0.31
235 158 0.35
236 57 0.13
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.37
Consensus pattern (232 bp):
AATTATATTAATTAATTAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTA
TAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTGGAGAAAAAATAATAAAAA
TAAAATTTGACGATGTGGAAAATCACATGGAAAAATTTATTTTAATTAAATAATATTTATAAAAA
TTATTTTAATTAAATAATATTTAAATAAATTAATCCA
Found at i:34120218 original size:29 final size:29
Alignment explanation
Indices: 34120184--34120251 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 29
34120174 AATCACATGG
34120184 TAAAAATTTATTTTAATTAAATAATATTTA
1 TAAAAA-TTATTTTAATTAAATAATATTTA
34120214 TAAAAATTATTTTAATTAAATAATATTTA
1 TAAAAATTATTTTAATTAAATAATATTTA
34120243 -AATAAATTA
1 TAA-AAATTA
34120252 ATAAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
28 2 0.05
29 29 0.78
30 6 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
TAAAAATTATTTTAATTAAATAATATTTA
Found at i:34120240 original size:16 final size:15
Alignment explanation
Indices: 34120195--34120254 Score: 63
Period size: 15 Copynumber: 4.0 Consensus size: 15
34120185 AAAAATTTAT
34120195 TTTAATTAAATAATA
1 TTTAATTAAATAATA
34120210 TTT-A-TAAA-AATTA
1 TTTAATTAAATAA-TA
34120223 TTTTAATTAAATAATA
1 -TTTAATTAAATAATA
*
34120239 TTTAAATAAATTAATA
1 TTTAATTAAA-TAATA
34120255 AAAATTATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.05
13 6 0.16
14 4 0.11
15 13 0.34
16 11 0.29
17 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTTAATTAAATAATA
Found at i:34120259 original size:39 final size:39
Alignment explanation
Indices: 34120200--34120307 Score: 155
Period size: 39 Copynumber: 2.8 Consensus size: 39
34120190 TTTATTTTAA
* *
34120200 TTAAATAATATTTATAAAAATTATTTTAATTAAATAATAT
1 TTAAATAA-ATTAATAAAAATTATATTAATTAAATAATAT
*
34120240 TTAAATAAATTAATAAAAATTATATTAATTATATAATAT
1 TTAAATAAATTAATAAAAATTATATTAATTAAATAATAT
**
34120279 TTAAATAAATTAATCTAAATTATA-TAATT
1 TTAAATAAATTAATAAAAATTATATTAATT
34120308 TAAAAAAATT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
38 5 0.08
39 50 0.79
40 8 0.13
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (39 bp):
TTAAATAAATTAATAAAAATTATATTAATTAAATAATAT
Found at i:34120269 original size:19 final size:19
Alignment explanation
Indices: 34120213--34120317 Score: 70
Period size: 20 Copynumber: 5.5 Consensus size: 19
34120203 AATAATATTT
*
34120213 ATAAAAATTATTTTAATTAA
1 ATAAAAATTATATTAATT-A
* * * *
34120233 ATAATATTTAAATAAATTA
1 ATAAAAATTATATTAATTA
34120252 ATAAAAATTATATTAATTA
1 ATAAAAATTATATTAATTA
* * * *
34120271 TATAATATTTAAATAAATTA
1 -ATAAAAATTATATTAATTA
**
34120291 ATCTAAATTATA-TAATTTA
1 ATAAAAATTATATTAA-TTA
34120310 A-AAAAATT
1 ATAAAAATT
34120318 GTGTATAAAA
Statistics
Matches: 62, Mismatches: 21, Indels: 6
0.70 0.24 0.07
Matches are distributed among these distances:
18 7 0.11
19 27 0.44
20 28 0.45
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (19 bp):
ATAAAAATTATATTAATTA
Found at i:34120289 original size:20 final size:19
Alignment explanation
Indices: 34120227--34120292 Score: 78
Period size: 20 Copynumber: 3.4 Consensus size: 19
34120217 AAATTATTTT
34120227 AATTAAATAATATTTAAATA
1 AATT-AATAATATTTAAATA
* * * *
34120247 AATTAATAAAAATTATATT
1 AATTAATAATATTTAAATA
34120266 AATTATATAATATTTAAATA
1 AATTA-ATAATATTTAAATA
34120286 AATTAAT
1 AATTAAT
34120293 CTAAATTATA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
19 18 0.49
20 19 0.51
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTAATAATATTTAAATA
Found at i:34120454 original size:15 final size:16
Alignment explanation
Indices: 34120426--34120483 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
34120416 GAAAAATTTT
34120426 TATTT-TAATTAAATAA
1 TATTTATAA-TAAATAA
34120442 TATTTATAA-AAAT--
1 TATTTATAATAAATAA
34120455 TATTT-TAATTAAATAA
1 TATTTATAA-TAAATAA
34120471 TATTTA-AATAAAT
1 TATTTATAATAAAT
34120484 TAATCCAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
12 3 0.08
13 5 0.14
14 4 0.11
15 9 0.25
16 12 0.33
17 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTATAATAAATAA
Found at i:34120462 original size:29 final size:29
Alignment explanation
Indices: 34120425--34120485 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
34120415 GGAAAAATTT
34120425 TTATTTTAATTAAATAATATTTATAA-AAA
1 TTATTTTAATTAAATAATATTTA-AATAAA
34120454 TTATTTTAATTAAATAATATTTAAATAAA
1 TTATTTTAATTAAATAATATTTAAATAAA
34120483 TTA
1 TTA
34120486 ATCCAAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 2 0.06
29 29 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
TTATTTTAATTAAATAATATTTAAATAAA
Found at i:34120474 original size:16 final size:16
Alignment explanation
Indices: 34120426--34120475 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
34120416 GAAAAATTTT
34120426 TATTTTAATTAAATAA
1 TATTTTAATTAAATAA
34120442 TA-TTT-A-TAAA-AA
1 TATTTTAATTAAATAA
34120454 TTATTTTAATTAAATAA
1 -TATTTTAATTAAATAA
34120471 TATTT
1 TATTT
34120476 AAATAAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 2 0.07
13 6 0.21
14 4 0.14
15 4 0.14
16 11 0.38
17 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTTTAATTAAATAA
Found at i:34120751 original size:24 final size:24
Alignment explanation
Indices: 34120719--34120765 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
34120709 TTAACTTAAA
*
34120719 TGATAAAAC-GAACGATAATATTTG
1 TGATAAAACAG-ACGAGAATATTTG
34120743 TGATAAAACAGACGAGAATATTT
1 TGATAAAACAGACGAGAATATTT
34120766 CAATAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.28
Consensus pattern (24 bp):
TGATAAAACAGACGAGAATATTTG
Found at i:34122020 original size:42 final size:42
Alignment explanation
Indices: 34121961--34122041 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
34121951 TTTAGCTTGC
34121961 TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGTATA
1 TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGTATA
34122003 TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGT
1 TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGT
34122042 GTGTTTTGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (42 bp):
TTAATTGGAGATTGAAACTAAACTTAGTAACTAAATAGTATA
Found at i:34122848 original size:16 final size:16
Alignment explanation
Indices: 34122827--34122860 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
34122817 AATTTAATCG
34122827 AACAAGATGATAGACT
1 AACAAGATGATAGACT
34122843 AACAAGATGATAGACT
1 AACAAGATGATAGACT
34122859 AA
1 AA
34122861 TTTTGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (16 bp):
AACAAGATGATAGACT
Found at i:34123388 original size:73 final size:71
Alignment explanation
Indices: 34123306--34123444 Score: 181
Period size: 73 Copynumber: 1.9 Consensus size: 71
34123296 GGAAAATAAT
34123306 TTGGGGAAGACACACTTAGAGAAAATAAGAGAAAAGAAATTGGGCAAATGGGGGGAATGAAATC-
1 TTGGGGAAGACACACTTAGAGAAAATAAGAG--AAGAAATTGGG-AAATGGGGGGAATGAAATCA
34123370 GGGTTTAAG
63 GGGTTTAAG
* * * ** * *
34123379 TTGGGGAAGACGCAGTTAGGGAAAATCTGAGAAGAAATTGGGAAATTGGGGGTATGAAATCAGGG
1 TTGGGGAAGACACACTTAGAGAAAATAAGAGAAGAAATTGGGAAATGGGGGGAATGAAATCAGGG
34123444 T
66 T
34123445 AATCTGATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
70 17 0.29
71 15 0.26
73 26 0.45
ACGTcount: A:0.39, C:0.06, G:0.35, T:0.19
Consensus pattern (71 bp):
TTGGGGAAGACACACTTAGAGAAAATAAGAGAAGAAATTGGGAAATGGGGGGAATGAAATCAGGG
TTTAAG
Found at i:34123926 original size:73 final size:74
Alignment explanation
Indices: 34123804--34123979 Score: 250
Period size: 73 Copynumber: 2.4 Consensus size: 74
34123794 AAGGCTTCTT
34123804 TTTGCGGCGTTTTC-TAAAAACGCCACTAATAGTCAGACAAAAACAACAGCGTTTTCCACA-TGC
1 TTTGCGGCGTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACAACAGCGTTTTCCACACT-C
34123867 TTAAAACATA
65 TTAAAACATA
* * * * *
34123877 TTTGCGGCGTTTTCTTAAAAATGCCACTAATAGTTAGA-AAAAACGACAGCGTTTTGCACACTTT
1 TTTGCGGCGTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACAACAGCGTTTTCCACACTCT
34123941 TAAAACATA
66 TAAAACATA
* * *
34123950 TTTGCGGCTTTTTTTTTAAAACGCCACTAA
1 TTTGCGGCGTTTTCTTAAAAACGCCACTAA
34123980 AGGCTATCCT
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
73 70 0.76
74 22 0.24
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (74 bp):
TTTGCGGCGTTTTCTTAAAAACGCCACTAATAGTCAGACAAAAACAACAGCGTTTTCCACACTCT
TAAAACATA
Found at i:34124336 original size:21 final size:21
Alignment explanation
Indices: 34124318--34124377 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 21
34124308 AAAATTTATT
34124318 TTTAAGATTTTAGGGTTTATAG
1 TTTAAGA-TTTAGGGTTTATAG
34124340 TTTAAGATTTAGGGTTTA-AGG
1 TTTAAGATTTAGGGTTTATA-G
34124361 TTTATAG-TTTAGGGTTT
1 TTTA-AGATTTAGGGTTT
34124378 GGGATTTAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.03
21 26 0.72
22 9 0.25
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (21 bp):
TTTAAGATTTAGGGTTTATAG
Found at i:34124343 original size:14 final size:14
Alignment explanation
Indices: 34124326--34124377 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
34124316 TTTTTAAGAT
*
34124326 TTTAGGGTTTATAG
1 TTTAAGGTTTATAG
* **
34124340 TTTAAGATTTAGGG
1 TTTAAGGTTTATAG
34124354 TTTAAGGTTTATAG
1 TTTAAGGTTTATAG
*
34124368 TTTAGGGTTT
1 TTTAAGGTTT
34124378 GGGATTTAGT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (14 bp):
TTTAAGGTTTATAG
Found at i:34124520 original size:16 final size:16
Alignment explanation
Indices: 34124495--34124538 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
34124485 GAGATTTCGG
*
34124495 TTTAAAGGTTTAGTGA
1 TTTAAGGGTTTAGTGA
*
34124511 TTTAAGGGTTTAGTGG
1 TTTAAGGGTTTAGTGA
*
34124527 GTT-AGGGTTTAG
1 TTTAAGGGTTTAG
34124539 AGAAAGCCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 9 0.36
16 16 0.64
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (16 bp):
TTTAAGGGTTTAGTGA
Found at i:34125017 original size:15 final size:16
Alignment explanation
Indices: 34124991--34125023 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
34124981 TAAACCCCAA
34124991 CCCTTAAACCCATAAT
1 CCCTTAAACCCATAAT
34125007 CCCTT-AACCCATAAT
1 CCCTTAAACCCATAAT
34125022 CC
1 CC
34125024 ATAAACCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.24
Consensus pattern (16 bp):
CCCTTAAACCCATAAT
Found at i:34125030 original size:15 final size:15
Alignment explanation
Indices: 34124995--34125030 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
34124985 CCCCAACCCT
*
34124995 TAAACCCATAATCCC
1 TAAACCCATAATCCA
*
34125010 TTAACCCATAATCCA
1 TAAACCCATAATCCA
34125025 TAAACC
1 TAAACC
34125031 TTAAAATAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:34130126 original size:42 final size:43
Alignment explanation
Indices: 34130034--34130185 Score: 168
Period size: 43 Copynumber: 3.6 Consensus size: 43
34130024 CAATACTGTA
* * * * * *
34130034 TCCCAGATATGGTCTTACATGTTATC-ACATATCGATGCAACTG
1 TCCCAGACATGGTCTTACACGTAATCAAAATA-CAATGCAAATG
* *
34130077 TCCCAGACAGGGTCTTACACG-AATCATAATACAATGTC-AATG
1 TCCCAGACATGGTCTTACACGTAATCAAAATACAATG-CAAATG
34130119 TCCCAGACATGGTCTTACACGTAATCAAAATACAATGCAAATG
1 TCCCAGACATGGTCTTACACGTAATCAAAATACAATGCAAATG
*
34130162 -CCTCAGACATGGTCTTACATGTAA
1 TCC-CAGACATGGTCTTACACGTAA
34130186 ACACTTCTCG
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
42 33 0.35
43 60 0.65
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAAATACAATGCAAATG
Found at i:34132823 original size:16 final size:16
Alignment explanation
Indices: 34132804--34132834 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34132794 CTTCTTCACT
34132804 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
34132820 TACTTACTTACTTAA
1 TACTCACTTACTTAA
34132835 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:34132840 original size:20 final size:20
Alignment explanation
Indices: 34132801--34132840 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
34132791 AAACTTCTTC
* *
34132801 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
34132821 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
34132841 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:34133208 original size:55 final size:53
Alignment explanation
Indices: 34133026--34133277 Score: 230
Period size: 55 Copynumber: 4.8 Consensus size: 53
34133016 ACACGGGTAC
* * * *
34133026 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* * * * *
34133075 CTTACCATTGCCATGTCTCGACATGGTTTTATATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * * *
34133128 CTCACCAATGTCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * *
34133183 CTTATCAATGCCATGTCTTGACATGGTCTTACATGGTTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGG-TACCTTGCCTTATAGAA
*
34133236 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTACC
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTACC
34133278 CTTAAACCCT
Statistics
Matches: 165, Mismatches: 26, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
49 33 0.20
52 2 0.01
53 43 0.26
54 16 0.10
55 69 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:34133230 original size:108 final size:110
Alignment explanation
Indices: 34133073--34133273 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
34133063 ATCCTTTTGA
* * *
34133073 AACTTACCATTGCCATGTCTCGACATGGTTTTATATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTA-GAAACCTCACCAA
*
34133136 -TGTCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
34133181 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
34133246 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
34133274 TACCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 7 0.09
110 27 0.33
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:34136216 original size:22 final size:22
Alignment explanation
Indices: 34136166--34136217 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
34136156 CGCCCATGTT
**
34136166 GCCTGGCCGTGTGGATCACGTA
1 GCCTGGCCGTGTGGATCACACA
* *
34136188 GCTTGGCCGTGTGGATCACACG
1 GCCTGGCCGTGTGGATCACACA
34136210 GCCTGGCC
1 GCCTGGCC
34136218 CAAAATCCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.12, C:0.31, G:0.37, T:0.21
Consensus pattern (22 bp):
GCCTGGCCGTGTGGATCACACA
Found at i:34141190 original size:16 final size:16
Alignment explanation
Indices: 34141171--34141201 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34141161 CTTCTTCACT
34141171 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
34141187 TACTTACTTACTTAA
1 TACTCACTTACTTAA
34141202 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:34141207 original size:20 final size:20
Alignment explanation
Indices: 34141168--34141207 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
34141158 AAACTTCTTC
* *
34141168 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
34141188 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
34141208 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:34141577 original size:55 final size:52
Alignment explanation
Indices: 34141401--34141647 Score: 181
Period size: 55 Copynumber: 4.7 Consensus size: 52
34141391 ACCTTACCAT
* * *
34141401 TGCCATGAC-TTGTCATGGTCTTGCATGGTATCC-T---TT-TGAAACTTACCAT
1 TGCCATGTCTTTG-CATGGTCTTACATGGTATCCTTGCCTTATG-AACTTA-CAA
* *
34141450 TGCCATGTC-TTGACATGGTCTTCCATGGTATCCTTGCCTTATGAACTCACGAA
1 TGCCATGTCTTTG-CATGGTCTTACATGGTATCCTTGCCTTATGAACTTAC-AA
* *
34141503 TGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTTGCATGGTCTTACAT-GGTATCC-TTGCCTTAT-G-AACTTA-CAA
*
34141558 TGCCATGTCTTTGCATGGTCTTACATGGTTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTTGCATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTTA-CAA
* * * * *
34141612 TTTCCATGCCTTGGCATGGACTTACAGGGTATCCTT
1 -TGCCATGTCTTTGCATGGTCTTACATGGTATCCTT
34141648 AAACCCTAAT
Statistics
Matches: 162, Mismatches: 20, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
49 30 0.19
50 1 0.01
52 3 0.02
53 41 0.25
54 16 0.10
55 68 0.42
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (52 bp):
TGCCATGTCTTTGCATGGTCTTACATGGTATCCTTGCCTTATGAACTTACAA
Found at i:34141585 original size:108 final size:110
Alignment explanation
Indices: 34141440--34141637 Score: 278
Period size: 108 Copynumber: 1.8 Consensus size: 110
34141430 ATCCTTTTGA
* * *
34141440 AACTTACCATTGCCATGTCTTGACATGGTCTTCCATGGTATCCTTGCCTTATG-AA-CTCACGAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAACCTCACCAA
*
34141503 -TGCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGACTTACATAGGACCTTTGCCTTATAGT
* * *
34141548 AACTTATCAATGCCATGTCTTTG-CATGGTCTTACATGGTTTCCTTGCCTTAGAAACCTTACCAA
1 AACTTACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAA
*
34141612 TTTCCATGCCTTGGCATGGACTTACA
65 TTGCCATGCCTTGGCATGGACTTACA
34141638 GGGTATCCTT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
107 1 0.01
108 45 0.58
109 9 0.12
110 23 0.29
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGACTTACATAGGACCTTTGCCTTATAGT
Found at i:34142017 original size:29 final size:30
Alignment explanation
Indices: 34141985--34142042 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
34141975 TCCTTGACTC
34141985 AAACTTTT-CAAAATTACACTTTTGCCCCT
1 AAACTTTTACAAAATTACACTTTTGCCCCT
** *
34142014 AAACTTTTACTTATTTACACTTTTGCCCC
1 AAACTTTTACAAAATTACACTTTTGCCCC
34142043 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAAATTACACTTTTGCCCCT
Found at i:34146485 original size:28 final size:28
Alignment explanation
Indices: 34146445--34146512 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
34146435 TAGAGGTGCT
**
34146445 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAACGACC
34146473 ATTATACCCCTATGTATGCAAAACGACC
1 ATTATACCCCTATGTATGCAAAACGACC
*
34146501 TTTATACCCCTA
1 ATTATACCCCTA
34146513 GGGTTAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAACGACC
Found at i:34146719 original size:29 final size:28
Alignment explanation
Indices: 34146618--34146708 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
34146608 AGGAAGCGTC
34146618 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
34146646 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
34146674 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
34146703 CTGGTG
1 CTGGTG
34146709 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:34157325 original size:16 final size:17
Alignment explanation
Indices: 34157294--34157326 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
34157284 TATAATCCAG
34157294 CATATATCAAAACATAT
1 CATATATCAAAACATAT
*
34157311 CATATA-CAGAACATAT
1 CATATATCAAAACATAT
34157327 AACAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (17 bp):
CATATATCAAAACATAT
Found at i:34159868 original size:40 final size:39
Alignment explanation
Indices: 34159816--34159943 Score: 175
Period size: 40 Copynumber: 3.2 Consensus size: 39
34159806 TAACTCATAC
* * *
34159816 AATGCCTTCGGGACTTAACCCGGATTTTAAAACACGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
34159856 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
*
34159896 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
34159936 AATGCCTT
1 AATGCCTT
34159944 TGGATCTTAG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:34159983 original size:80 final size:79
Alignment explanation
Indices: 34159814--34159999 Score: 200
Period size: 80 Copynumber: 2.3 Consensus size: 79
34159804 AGTAACTCAT
* * *
34159814 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACACGCACGAATGCCTTCGGGACTTAACCCGG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACACGCACAAATGCCTTCGGGACTTAACCCGG
*
34159879 AATTAGTATCTCGC
66 AATTAGTATCTAGC
* * **
34159893 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTT-TGGATCTTAGTC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACACGCACAAATGCCTTCGGGA-CTTAACC
*
34159956 CGG-GTATAGTCA-CTTAGC
63 CGGAAT-TAGT-ATC-TAGC
*
34159974 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
34160000 CAGCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
79 12 0.13
80 70 0.77
81 9 0.10
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACACGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTATCTAGC
Found at i:34167721 original size:40 final size:39
Alignment explanation
Indices: 34167632--34167850 Score: 192
Period size: 40 Copynumber: 5.5 Consensus size: 39
34167622 CTCGTTCAAG
* * ** **
34167632 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGAAT-TAGTAACTCGCACAAA
* *
34167671 TGCCTTCGGGACTTAACCCGATTTTAGTAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGA-ATTAGTAACTCGCACAAA
*
34167711 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCC-GAATTAGTAACTCGCACAAA
* * *
34167751 GGCCTTCGGGACTTAACTCGGAATTAATAACTCGCACAAA
1 TGCCTTCGGGACTTAAC-CCGAATTAGTAACTCGCACAAA
** * * *
34167791 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAACCCGAAT-TAGTAAC-TCGCACAAA
*
34167832 -GCCTTCGGGACTTAGCCCG
1 TGCCTTCGGGACTTAACCCG
34167851 GACAGCATTC
Statistics
Matches: 151, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.24
40 101 0.67
41 14 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
TGCCTTCGGGACTTAACCCGAATTAGTAACTCGCACAAA
Found at i:34175396 original size:39 final size:39
Alignment explanation
Indices: 34175342--34175494 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
34175332 CAGTGATGTT
*
34175342 TATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
34175381 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * *
34175420 TATCTGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * * * *
34175459 TAACCGGACTTAAGATTCACAGGCTACGTGCTGGAA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
34175495 ATATGTCTGG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 105 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:34175521 original size:39 final size:39
Alignment explanation
Indices: 34175361--34175531 Score: 132
Period size: 39 Copynumber: 4.4 Consensus size: 39
34175351 TTAGGGTCCG
* * * ** *
34175361 CAGGCTATGTGTTGGAATTATATCCGGACTTAGGGTC-CG
1 CAGGCTACGTGCTGGAATTATATCTGGAC-TAAAGTCTCA
* *
34175400 CAGGCTATGTGCTGGAATTATATCTGGACTTAAGGTC-CA
1 CAGGCTACGTGCTGGAATTATATCTGGAC-TAAAGTCTCA
* * * *
34175439 CAGGCTATGTGCTGGAATTATAACCGGACTTAAGAT-TCA
1 CAGGCTACGTGCTGGAATTATATCTGGACTAAAG-TCTCA
* * * *
34175478 CAGGCTACGTGCTGGAAATATGTCTGGGCTAAAGTCTCG
1 CAGGCTACGTGCTGGAATTATATCTGGACTAAAGTCTCA
* *
34175517 CAGGCTTCGAGCTGG
1 CAGGCTACGTGCTGG
34175532 TTTTATACTG
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
38 4 0.04
39 107 0.96
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (39 bp):
CAGGCTACGTGCTGGAATTATATCTGGACTAAAGTCTCA
Found at i:34175521 original size:78 final size:78
Alignment explanation
Indices: 34175342--34175522 Score: 211
Period size: 78 Copynumber: 2.3 Consensus size: 78
34175332 CAGTGATGTT
* ** * * * * *
34175342 TATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAATTATATCCGGACTTAGGGTCCGCAGGCTA
1 TATCTGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGATCCACAGGCTA
* *
34175407 TGTGCTGGAATTA
66 CGTGCTGGAAATA
* * *
34175420 TATCTGGACTTAAGGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTAAGATTCACAGGCTA
1 TATCTGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGATCCACAGGCTA
34175485 CGTGCTGGAAATA
66 CGTGCTGGAAATA
* *
34175498 TGTCTGGGC-TAAAGTCTCGCAGGCT
1 TATCTGGACTTAAAGTC-CGCAGGCT
34175523 TCGAGCTGGT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
77 6 0.07
78 81 0.93
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (78 bp):
TATCTGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGATCCACAGGCTA
CGTGCTGGAAATA
Found at i:34183172 original size:15 final size:15
Alignment explanation
Indices: 34183152--34183193 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
34183142 TATTAAAGAT
34183152 ATGTTTTAG-ATTAAC
1 ATGTTTT-GTATTAAC
34183167 ATGTTTTGTATTAAC
1 ATGTTTTGTATTAAC
34183182 ATGTTTTGTATT
1 ATGTTTTGTATT
34183194 GGAATTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 1 0.04
15 25 0.96
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.55
Consensus pattern (15 bp):
ATGTTTTGTATTAAC
Found at i:34199406 original size:23 final size:23
Alignment explanation
Indices: 34199380--34199423 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
34199370 TGTCCCAGAC
* *
34199380 ATGGTCTTACGCGTAATCACAAT
1 ATGGTCTTACACATAATCACAAT
34199403 ATGGTCTTACACATAATCACA
1 ATGGTCTTACACATAATCACA
34199424 TCTTGTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (23 bp):
ATGGTCTTACACATAATCACAAT
Found at i:34204441 original size:19 final size:19
Alignment explanation
Indices: 34204419--34204461 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
34204409 AAGGCCAATA
*
34204419 ACACGACCCATGTGGGCCC
1 ACACGACCCATATGGGCCC
34204438 ACACGACCCATATGGGCCC
1 ACACGACCCATATGGGCCC
34204457 ACACG
1 ACACG
34204462 CCTGTGTGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.26, C:0.42, G:0.23, T:0.09
Consensus pattern (19 bp):
ACACGACCCATATGGGCCC
Found at i:34224696 original size:55 final size:55
Alignment explanation
Indices: 34224609--34224733 Score: 153
Period size: 55 Copynumber: 2.3 Consensus size: 55
34224599 GTTAATTTAA
* * ** *
34224609 CAGGTTCGACCACGGGTGTTCCACACGAGCGTGTCGA-ATGCCCGTGTTGTTTTGG
1 CAGGCTCGACCACGGGTCTTCCACACGAGCGTGTC-ATACACCCGAGTTGTTTTGG
* * *
34224664 CAGGCTCGACCACGGTTCTTCCGCACGGGCGTGTCATACACCCGAGTTGTTTTGG
1 CAGGCTCGACCACGGGTCTTCCACACGAGCGTGTCATACACCCGAGTTGTTTTGG
*
34224719 CAGGCTCGATCACGG
1 CAGGCTCGACCACGG
34224734 CTATATTGCA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 1 0.02
55 59 0.98
ACGTcount: A:0.15, C:0.29, G:0.31, T:0.25
Consensus pattern (55 bp):
CAGGCTCGACCACGGGTCTTCCACACGAGCGTGTCATACACCCGAGTTGTTTTGG
Found at i:34237239 original size:40 final size:40
Alignment explanation
Indices: 34237145--34237369 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
34237135 TATTCGAATG
* *
34237145 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * * *
34237186 ATAACCAGACTAAGATCCGAAGGCATTCGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
34237226 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
34237266 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
34237306 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
34237346 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
34237370 CTTGCGCAAG
Statistics
Matches: 155, Mismatches: 29, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
40 129 0.83
41 26 0.17
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:34241818 original size:93 final size:93
Alignment explanation
Indices: 34241706--34241876 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
34241696 GCCCATAAGT
* *
34241706 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34241771 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
34241799 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
34241864 CGAGTTCGGATGC
66 CGAGCTCGGATGC
34241877 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:34241873 original size:46 final size:46
Alignment explanation
Indices: 34241698--34241873 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
34241688 TGTAACCCGC
* *
34241698 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
34241744 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
34241790 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
34241837 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
34241874 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:34244297 original size:15 final size:15
Alignment explanation
Indices: 34244271--34244326 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
34244261 CAAGGAAACC
34244271 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
34244286 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
34244301 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
34244316 GAATAAAGAAA
1 GAATAAAGAAA
34244327 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:34247427 original size:46 final size:45
Alignment explanation
Indices: 34247284--34247427 Score: 111
Period size: 46 Copynumber: 3.1 Consensus size: 45
34247274 CCCGCCCATA
*
34247284 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
** * *
34247333 --CCAACTCGGACTCAACTCAACGAGTTTGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
34247376 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
34247423 AGTGA
1 AGTGA
34247428 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 32 0.42
47 27 0.36
48 5 0.07
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:34250958 original size:34 final size:33
Alignment explanation
Indices: 34250920--34250991 Score: 99
Period size: 34 Copynumber: 2.2 Consensus size: 33
34250910 TCGATCGCAA
* *
34250920 TATCAGTGTGGGCTTTAGCCTAATGCAGTAATAG
1 TATCAGTGTGGGCCTTAGCCCAATGCAGT-ATAG
* *
34250954 TATCAGTGTGGGCCTTAGCCCACTTCAGTATAG
1 TATCAGTGTGGGCCTTAGCCCAATGCAGTATAG
34250987 TATCA
1 TATCA
34250992 AAGATGTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 9 0.26
34 25 0.74
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (33 bp):
TATCAGTGTGGGCCTTAGCCCAATGCAGTATAG
Found at i:34254633 original size:34 final size:34
Alignment explanation
Indices: 34254590--34254657 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
34254580 TGCTTATCAT
34254590 TTCACATTCATGATTCAATTCCAATCGATCTAAC
1 TTCACATTCATGATTCAATTCCAATCGATCTAAC
34254624 TTCACATTCATGATTCAATTCCAATCGATCTAAC
1 TTCACATTCATGATTCAATTCCAATCGATCTAAC
34254658 ATGCATAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (34 bp):
TTCACATTCATGATTCAATTCCAATCGATCTAAC
Found at i:34256903 original size:40 final size:40
Alignment explanation
Indices: 34256712--34256896 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
34256702 TCGAATGATG
* * **
34256712 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTGTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
34256752 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34256792 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
34256831 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
34256872 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34256897 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34256918 original size:79 final size:79
Alignment explanation
Indices: 34256765--34256929 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
34256755 GGACTAAGAT
* * **
34256765 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
34256830 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* * *
34256844 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
34256907 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
34256923 CCGAAGG
1 CCGAAGG
34256930 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:34264963 original size:40 final size:39
Alignment explanation
Indices: 34264879--34265063 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
34264869 TCGAATGATG
* * * *
34264879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
34264919 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
34264959 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
34264998 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
34265039 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
34265064 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34265015 original size:79 final size:81
Alignment explanation
Indices: 34264879--34265061 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
34264869 TCGAATGATG
* *
34264879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34264943 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
34264958 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
34265020 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
34265038 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
34265062 TGAATGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:34265085 original size:79 final size:79
Alignment explanation
Indices: 34264932--34265086 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
34264922 GGACTAAGAT
* **
34264932 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
34264997 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
34265011 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
34265074 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
34265087 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.62
80 23 0.35
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:34268645 original size:38 final size:38
Alignment explanation
Indices: 34268595--34268710 Score: 146
Period size: 38 Copynumber: 3.0 Consensus size: 38
34268585 TTAAAAACAA
*
34268595 ATATTAAAGATGTTCAAACTATGACATAATTAAAGAC-C
1 ATATTAATGATGTTCAAA-TATGACATAATTAAAGACTC
*
34268633 ATATTAATGATGTTCAGATTATGACATAATTAAA-ACTC
1 ATATTAATGATGTTCA-AATATGACATAATTAAAGACTC
* **
34268671 ATATTAATGATGATCAAATAAAAACATAATTAAAGACTC
1 ATATTAATGATGTTCAAAT-ATGACATAATTAAAGACTC
34268710 A
1 A
34268711 AACTATAATA
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
37 4 0.06
38 58 0.85
39 6 0.09
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.31
Consensus pattern (38 bp):
ATATTAATGATGTTCAAATATGACATAATTAAAGACTC
Found at i:34273343 original size:47 final size:47
Alignment explanation
Indices: 34273262--34273655 Score: 574
Period size: 47 Copynumber: 8.4 Consensus size: 47
34273252 AATGTGAAAG
*
34273262 TGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
34273310 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
34273357 GGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
34273404 TGTATATGGGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACG
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
34273451 TGTGTATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
34273498 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * *
34273545 TGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * *
34273592 TGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
**
34273638 GTGTATAAATGTGATAAG
1 -TGTATATGTGTGATAAG
34273656 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 30, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 302 0.96
48 12 0.04
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.27
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
Found at i:34273345 original size:22 final size:22
Alignment explanation
Indices: 34273318--34273392 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
34273308 CATGTATATG
34273318 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ** *
34273340 TGTGATGAATG-TGAATAGGTGTATG
1 TGTGAT-AAGGCCGAAT-GG-CCA-A
34273365 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
34273387 TGTGAT
1 TGTGAT
34273393 GAAAGTGAAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 16 0.42
23 6 0.16
24 6 0.16
25 10 0.26
ACGTcount: A:0.29, C:0.11, G:0.33, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:34273830 original size:37 final size:37
Alignment explanation
Indices: 34273774--34273853 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
34273764 CCGGGCTCTA
* * *
34273774 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
34273811 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
34273848 AAGACT
1 AAGACT
34273854 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:34275694 original size:40 final size:40
Alignment explanation
Indices: 34275643--34276023 Score: 622
Period size: 40 Copynumber: 9.8 Consensus size: 40
34275633 TGGTTATTCG
34275643 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
34275683 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
34275722 AGTGATGTATCC-GGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
34275760 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
34275800 AGT-ATGTATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
34275838 AGTGATATATCCGGGCTAAGTCCCGAACAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
34275878 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC--G-T
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
34275915 AGT-ATGTATCCGGG-TAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
34275952 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
34275992 AGTGATATATCCGTGCTAAATCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
34276024 ATCATGCTGG
Statistics
Matches: 321, Mismatches: 10, Indels: 20
0.91 0.03 0.06
Matches are distributed among these distances:
34 13 0.04
35 5 0.02
36 12 0.04
37 8 0.02
38 80 0.25
39 57 0.18
40 146 0.45
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:34275799 original size:78 final size:80
Alignment explanation
Indices: 34275643--34276023 Score: 631
Period size: 78 Copynumber: 4.9 Consensus size: 80
34275633 TGGTTATTCG
34275643 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
34275707 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
34275722 AGTGATGTATCC-GGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
34275785 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
34275800 AGT-ATGTATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
34275863 AACAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
34275878 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC--G-TAGT-ATGTATCCGGG-TAAGT-CCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
34275937 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * *
34275952 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
34276017 AAGAGCA
66 AAGAGCA
34276024 ATCATGCTGG
Statistics
Matches: 283, Mismatches: 9, Indels: 19
0.91 0.03 0.06
Matches are distributed among these distances:
74 51 0.18
75 5 0.02
76 11 0.04
77 62 0.22
78 98 0.35
79 24 0.08
80 32 0.11
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCT
Found at i:34275985 original size:114 final size:116
Alignment explanation
Indices: 34275643--34276023 Score: 617
Period size: 114 Copynumber: 3.3 Consensus size: 116
34275633 TGGTTATTCG
*
34275643 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG-GCTAGT-ATGTATCCGGG-TAAGTCCGA
34275708 AGAGCATTCGTGCTAGTGATGTATCC-GGCTAAG-TCCGAAGAGCATTCGTGCT
63 AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
*
34275760 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTATGTATCCGGCTAAGTCCCGAA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCG-GCTAGTATGTATCCGGGTAAGT-CCGAA
* * *
34275825 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAACAGCATTCGTGCT
64 GAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
34275878 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTC-G-TAGTATGTATCCGGGTAAGTCCGAAGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGGCTAGTATGTATCCGGGTAAGTCCGAAGA
34275941 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
66 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* * *
34275992 AGTGATATATCCGTGCTAAATCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
34276024 ATCATGCTGG
Statistics
Matches: 249, Mismatches: 12, Indels: 9
0.92 0.04 0.03
Matches are distributed among these distances:
114 84 0.34
115 24 0.10
116 39 0.16
117 50 0.20
118 52 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (116 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGGCTAGTATGTATCCGGGTAAGTCCGAAGA
GCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
Found at i:34280271 original size:87 final size:94
Alignment explanation
Indices: 34280099--34280496 Score: 434
Period size: 95 Copynumber: 4.3 Consensus size: 94
34280089 TAATTGAATA
* *
34280099 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGACATGGCCAATGTGATGAAAGTG-ACATGTAT
1 AATGTGAACAGTGTGTATGTGTG-ATAAGGCCGA-ATGGCCAATGTGATG-AAGTGAACATGTAT
34280162 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
34280194 AATGTGAATAG-GTGTATGTGTGATAAGGCCGAATGGCC-ATGTGATG-A-TGAACATGTATA-G
1 AATGTGAACAGTGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAGTGAACATGTATATG
*
34280254 GGTGAT-AGG-CGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
34280281 AA-ATGAACAGTGTGTATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACATGTATAT
1 AATGTGAACAGTGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG-AAGTGAACATGTATAT
34280345 GTGTGATAAGGCCGAATGGCCAATGGTGATG
65 GTGTGATAAGGCCGAATGGCCAAT-GTGATG
* * *
34280376 AATGTGAACA-T-TGAATGTTGTTGATAA-GCCGAGTGGCC-ATGTTGATGAATGTG-AGATGAT
1 AATGTGAACAGTGTGTATG-TG-TGATAAGGCCGAATGGCCAATG-TGATGAA-GTGAACATG-T
* * * *
34280436 GTATGTGAGATAAGG-CTAATGGCCCGATGTGATG
61 ATATGTGTGATAAGGCCGAATGG-CCAATGTGATG
* **
34280470 AATGTGAA-AGTGTATAAATGTGATAAG
1 AATGTGAACAGTGTGTATGTGTGATAAG
34280497 TTCCCGAAGG
Statistics
Matches: 263, Mismatches: 19, Indels: 43
0.81 0.06 0.13
Matches are distributed among these distances:
86 6 0.02
87 46 0.17
88 11 0.04
89 8 0.03
90 11 0.04
91 12 0.05
92 14 0.05
93 16 0.06
94 58 0.22
95 67 0.25
96 14 0.05
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (94 bp):
AATGTGAACAGTGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAGTGAACATGTATATG
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:34280313 original size:134 final size:135
Alignment explanation
Indices: 34280133--34280376 Score: 395
Period size: 134 Copynumber: 1.8 Consensus size: 135
34280123 TAGGGCCGAC
* *
34280133 ATGGCCAATGTGATGAAAGTGACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGGCCAATGTGATGAAAGTGACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAG
* *
34280198 TGAATAGGTGTATGTGTGATAAGGCCGAATGGCC-AT-GTGATGATGAACATGTATAGGGTGATA
66 TGAACAGGTATATGTGTGATAAGGCCGAATGGCCAATGGTGATGATGAACATGTATAGGGTGATA
34280261 GGCGA
131 GGCGA
*
34280266 ATGGCCAATGTGATGAAA-TGAACAGTGTGTATGTGTGATAAAGCCGAATGGCCAATGTGATGAA
1 ATGGCCAATGTGATGAAAGTG-ACA-TGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAA
*
34280330 AGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGGTGATGA
64 AGTGAACAGGTATATGTGTGATAAGGCCGAATGGCCAATGGTGATGA
34280377 ATGTGAACAT
Statistics
Matches: 101, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
132 2 0.02
133 21 0.21
134 69 0.68
135 2 0.02
136 7 0.07
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (135 bp):
ATGGCCAATGTGATGAAAGTGACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAG
TGAACAGGTATATGTGTGATAAGGCCGAATGGCCAATGGTGATGATGAACATGTATAGGGTGATA
GGCGA
Done.