Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 107 of 344
Found at i:36062378 original size:30 final size:30
Alignment explanation
Indices: 36062344--36062404 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36062334 TCATTAACTC
36062344 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36062374 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36062404 A
1 A
36062405 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36066474 original size:58 final size:58
Alignment explanation
Indices: 36066384--36066500 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
36066374 TCCCTAAGTG
36066384 AACCAAAGTCATCAAAACCTCCATCCACCTGATTACATTCCTCCAACACCTGTCTAAA
1 AACCAAAGTCATCAAAACCTCCATCCACCTGATTACATTCCTCCAACACCTGTCTAAA
*
36066442 AACCAAAGTCATCAAAACCTCCATCCACCTGATTGCATTCCTCCAACACCTGTCTAAA
1 AACCAAAGTCATCAAAACCTCCATCCACCTGATTACATTCCTCCAACACCTGTCTAAA
36066500 A
1 A
36066501 TTCTCCATTT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.36, G:0.06, T:0.22
Consensus pattern (58 bp):
AACCAAAGTCATCAAAACCTCCATCCACCTGATTACATTCCTCCAACACCTGTCTAAA
Found at i:36080687 original size:679 final size:678
Alignment explanation
Indices: 36079386--36080737 Score: 2605
Period size: 679 Copynumber: 2.0 Consensus size: 678
36079376 TATACATATA
*
36079386 GTTGAGTACTCACAATCCTATGGCATGCCAATTCTAACCAACGATTTCAAGATAACAAGGCCAAA
1 GTTGAGTACTCACAATCCTATGGCATGCCAATTCTAACCAACAATTTCAAGATAACAAGGCCAAA
*
36079451 ATATCATAAATCACTATCACTGAATGTTAGTATCTTTTGCAACAGAAGATGTAAGTTTAATCAAT
66 ATATCATAAATCACTATCACTAAATGTTAGTATCTTTTGCAACAGAAGATGTAAGTTTAATCAAT
*
36079516 ATGAGAAACAAAAAAATAGAGGAGGATGAAAGGGAGGAAATTCGGTCACCAGTAGCAATGGAGGT
131 ATGAGAAACAAAAAAATAGAGGAGGATGAAAGGGAGGAAATTCGGTCACCAGTAGCAAAGGAGGT
* *
36079581 TTGATGATGGTGGTGAGGGCAATGGTTCGATGGGGGTCAAGTGACGAGGGAGTGGTGGTTTGAAG
196 CTGATAATGGTGGTGAGGGCAATGGTTCGATGGGGGTCAAGTGACGAGGGAGTGGTGGTTTGAAG
* *
36079646 GTGGTTGGAGAGGAAGAAATTAAAGAGGTTCGACACAAATATAATGAGGAAAAAAATAAAATGAA
261 GTGGTTGGAAAGGAAGAAATTAAAGAGGTTCGACACAAATATAAGGAGGAAAAAAATAAAATGAA
36079711 GGAGAAAATAGCCTGCGGTGGTGCATGGTGGCAATCACAGTGGCGATGGAAGGAGTAAAAAAGGA
326 GGAGAAAATAGCCTGCGGTGGTGCATGGTGGCAATCACAGTGGCGATGGAAGGAGTAAAAAAGGA
36079776 AAATAGGAGGTGCAATGGCCACGAGGCGTGGTGAACGGTGGTGGAAAAGAGCAAAGATTAAAATA
391 AAATAGGAGGTGCAATGGCCACGAGGCGTGGTGAACGGTGGTGGAAAAGAGCAAAGATTAAAATA
* *
36079841 AAGGGTGGTTATTATTTTGCAAATTGAAGAGAAAATGTATGAGAAAATAAATGAAAAAGAAAGAA
456 AAGGGTGGTTATTATTTTGCAAATTAAAGAGAAAATGTATGAGAAAAGAAATGAAAAAGAAAGAA
36079906 AATGGGAGCAAGAAGGGGGTAAGGACGACAAAGGGGTGGTGAGAGCTTGGTCAACCATGACTAGG
521 AATGGGAGCAAGAAGGGGGTAAGGACGACAAAGGGGTGGTGAGAGCTTGGTCAACCATGACTAGG
*
36079971 TTCAATGAACCTAAACTAAAGGCAAGGTAAGAAGTTTTGGGAAGAAGAGGGAGACATGCTGTGAA
586 TTCAATGAACCTAAACTAAAGGCAAGGTAAGAAGTTTTGGGAAGAAGAGGGAGACATGATGTGAA
36080036 AAGGGGGATCACACTCCCTCAAACTATT
651 AAGGGGGATCACACTCCCTCAAACTATT
36080064 GTTGAGTACTCACAATCCTATGGCATGCCAATTCTAACCAACAATTTCAAGATAACAAGGCCAAA
1 GTTGAGTACTCACAATCCTATGGCATGCCAATTCTAACCAACAATTTCAAGATAACAAGGCCAAA
36080129 ATATCATAAATCACTATCACTAAATGTTAGTATCTTTTGCAACAGAAGATGTAAGTTTAATCAAT
66 ATATCATAAATCACTATCACTAAATGTTAGTATCTTTTGCAACAGAAGATGTAAGTTTAATCAAT
36080194 ATGAGAAACAAAAAAATAGAGGAGGATGAAAGGGAGGAAATTCGGTCACCAGTAGCAAAGGAGGT
131 ATGAGAAACAAAAAAATAGAGGAGGATGAAAGGGAGGAAATTCGGTCACCAGTAGCAAAGGAGGT
36080259 CTGATAATGGTGGTGAGGGCAATGGTTCGATGGGGGTCAAGTGACGAGGGAGTGGTGGTTTGAAG
196 CTGATAATGGTGGTGAGGGCAATGGTTCGATGGGGGTCAAGTGACGAGGGAGTGGTGGTTTGAAG
36080324 GTGGTTGGAAAGGAAGAAATTAAAGAGGTTCGACACAAATATAAGGAGGAAAAAAATAAAAATGA
261 GTGGTTGGAAAGGAAGAAATTAAAGAGGTTCGACACAAATATAAGGAGGAAAAAAAT-AAAATGA
36080389 AGGAGAAAATAGCCTGCGGTGGTGCATGGTGGCAATCACAGTGGCGATGGAAGGAGTAAAAAAGG
325 AGGAGAAAATAGCCTGCGGTGGTGCATGGTGGCAATCACAGTGGCGATGGAAGGAGTAAAAAAGG
36080454 AAAATAGGAGGTGCAATGGCCACGAGGCGTGGTGAACGGTGGTGGAAAAGAGCAAAGATTAAAAT
390 AAAATAGGAGGTGCAATGGCCACGAGGCGTGGTGAACGGTGGTGGAAAAGAGCAAAGATTAAAAT
36080519 AAAGGGTGGTTATTATTTTGCAAATTAAAGAGAAAATGTATGAGAAAAGAAATGAAAAAGAAAGA
455 AAAGGGTGGTTATTATTTTGCAAATTAAAGAGAAAATGTATGAGAAAAGAAATGAAAAAGAAAGA
36080584 AAATGGGAGCAAGAAGGGGGTAAGGACGACAAAGGGGTGGTGAGAGCTTGGTCAACCATGACTAG
520 AAATGGGAGCAAGAAGGGGGTAAGGACGACAAAGGGGTGGTGAGAGCTTGGTCAACCATGACTAG
36080649 GTTCAATGAACCTAAACTAAAGGCAAGGTAAGAAGTTTTGGGAAGAAGAGGGAGACATGATGTGA
585 GTTCAATGAACCTAAACTAAAGGCAAGGTAAGAAGTTTTGGGAAGAAGAGGGAGACATGATGTGA
36080714 AAAGGGGGATCACACTCCCTCAAA
650 AAAGGGGGATCACACTCCCTCAAA
36080738 TTAAGGTAAG
Statistics
Matches: 663, Mismatches: 10, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
678 310 0.47
679 353 0.53
ACGTcount: A:0.39, C:0.11, G:0.30, T:0.20
Consensus pattern (678 bp):
GTTGAGTACTCACAATCCTATGGCATGCCAATTCTAACCAACAATTTCAAGATAACAAGGCCAAA
ATATCATAAATCACTATCACTAAATGTTAGTATCTTTTGCAACAGAAGATGTAAGTTTAATCAAT
ATGAGAAACAAAAAAATAGAGGAGGATGAAAGGGAGGAAATTCGGTCACCAGTAGCAAAGGAGGT
CTGATAATGGTGGTGAGGGCAATGGTTCGATGGGGGTCAAGTGACGAGGGAGTGGTGGTTTGAAG
GTGGTTGGAAAGGAAGAAATTAAAGAGGTTCGACACAAATATAAGGAGGAAAAAAATAAAATGAA
GGAGAAAATAGCCTGCGGTGGTGCATGGTGGCAATCACAGTGGCGATGGAAGGAGTAAAAAAGGA
AAATAGGAGGTGCAATGGCCACGAGGCGTGGTGAACGGTGGTGGAAAAGAGCAAAGATTAAAATA
AAGGGTGGTTATTATTTTGCAAATTAAAGAGAAAATGTATGAGAAAAGAAATGAAAAAGAAAGAA
AATGGGAGCAAGAAGGGGGTAAGGACGACAAAGGGGTGGTGAGAGCTTGGTCAACCATGACTAGG
TTCAATGAACCTAAACTAAAGGCAAGGTAAGAAGTTTTGGGAAGAAGAGGGAGACATGATGTGAA
AAGGGGGATCACACTCCCTCAAACTATT
Found at i:36082944 original size:28 final size:28
Alignment explanation
Indices: 36082904--36082962 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
36082894 AAGTAATACG
36082904 TACCTGAACATTTTAAATGTATAGTACT
1 TACCTGAACATTTTAAATGTATAGTACT
36082932 TACCTGAACATTTTAAATGTATAGTACT
1 TACCTGAACATTTTAAATGTATAGTACT
36082960 TAC
1 TAC
36082963 TCGACGATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (28 bp):
TACCTGAACATTTTAAATGTATAGTACT
Found at i:36083182 original size:39 final size:38
Alignment explanation
Indices: 36083129--36083238 Score: 168
Period size: 39 Copynumber: 2.9 Consensus size: 38
36083119 CCCGACATAT
* *
36083129 TTCCAGCACGTAGCCTGCGAACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACC-TAAGTCCGGATATAA
*
36083168 TTCTAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGA-CCTAAGTCCGGATATAA
36083207 TTCCAGCACATAGCCTGCGGACCTAA-TCCGGA
1 TTCCAGCACATAGCCTGCGGACCTAAGTCCGGA
36083239 CATCACTGAA
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
37 6 0.09
38 5 0.08
39 53 0.80
40 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (38 bp):
TTCCAGCACATAGCCTGCGGACCTAAGTCCGGATATAA
Found at i:36092087 original size:49 final size:51
Alignment explanation
Indices: 36091970--36092105 Score: 195
Period size: 49 Copynumber: 2.7 Consensus size: 51
36091960 CTAACCATCT
* * *
36091970 GATACACGTAGTAGCTTGCACTTAGTACTACACACGCGATCGAAGTTATCG
1 GATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCC
* * * *
36092021 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCC
1 GATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCC
36092070 GATACACGTAGTAGCCTGCACTTAGTACTACACACG
1 GATACACGTAGTAGCCTGCACTTAGTACTACACACG
36092106 TGACCTCACA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 37 0.50
50 3 0.04
51 34 0.46
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (51 bp):
GATACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCC
Found at i:36093837 original size:46 final size:49
Alignment explanation
Indices: 36093705--36093936 Score: 218
Period size: 46 Copynumber: 4.9 Consensus size: 49
36093695 TCGGGTTATT
*
36093705 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT--TGAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAT-AGA
* * * *
36093753 CGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-ACGTCGGCCTCA-AGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATAGA
*
36093799 TGTA-AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGG-CT-AT-GA
1 TG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATAGA
* * * ** *
36093843 -GATGTGTCAGTGTAAGACCATGTCTGGAACATGGCATCGGCACGGATATA
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCATAGA
* *
36093893 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTC
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
36093937 GATTTCGATA
Statistics
Matches: 148, Mismatches: 23, Indels: 25
0.76 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.09
45 15 0.10
46 48 0.32
47 15 0.10
48 16 0.11
49 3 0.02
50 34 0.23
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (49 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATAGA
Found at i:36093972 original size:138 final size:133
Alignment explanation
Indices: 36093708--36094023 Score: 334
Period size: 138 Copynumber: 2.3 Consensus size: 133
36093698 GGTTATTTGA
**
36093708 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGACGAGAGCTAGTGTAAGACAT
*
36093773 GTCTGGGACATACGTCGGCCTCAAGATGTAAGCCAATGTAAGACATGTCTGGGACATGCATCGGC
66 GTCTGGGACATACGTCGGCCTC-AGATGTAAGCCAATGTAAGACATGTCT-GG--A-GCATCGAC
36093838 TATGA-GAT
126 T-TGAGGAT
* * * * *
36093846 GTGTCAGTGTAAGACCATGTCTGGAACATGGCATCGGCACGGATATATGAGAGCTAGTGTAAGAC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGG--AGACGAGAGCTAGTGTAAGA-
* * ** * *
36093911 CATGTCTGGGACATGGCGTCGGCCTC-GATTTCGATAGTTAGTGTAAGACCATTTCT-G-GCATC
63 CATGTCTGGGACAT-ACGTCGGCCTCAGATGT--A-AGCCAATGTAAGA-CATGTCTGGAGCATC
36093973 GACTTGATGGAT
123 GACTTGA-GGAT
*
36093985 GAGCCAGTGTAAGACCATTTCTGGGACATGGCATCGGCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
36094024 TTATACCCTA
Statistics
Matches: 150, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
137 3 0.02
138 45 0.30
139 38 0.25
140 22 0.15
141 14 0.09
142 12 0.08
143 10 0.07
144 6 0.04
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (133 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGACGAGAGCTAGTGTAAGACAT
GTCTGGGACATACGTCGGCCTCAGATGTAAGCCAATGTAAGACATGTCTGGAGCATCGACTTGAG
GAT
Found at i:36099363 original size:43 final size:43
Alignment explanation
Indices: 36099302--36099387 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
36099292 CAACAAAGGT
36099302 TAGATCAGATCATACTCATCACACTACGATAGATTTATATGGC
1 TAGATCAGATCATACTCATCACACTACGATAGATTTATATGGC
36099345 TAGATC-GAATCATACTCATCACACTACGATAGATTTATATGGC
1 TAGATCAG-ATCATACTCATCACACTACGATAGATTTATATGGC
36099388 ATGTATTTCT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 1 0.02
43 41 0.98
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (43 bp):
TAGATCAGATCATACTCATCACACTACGATAGATTTATATGGC
Found at i:36102335 original size:79 final size:81
Alignment explanation
Indices: 36102199--36102381 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
36102189 TCGAATGATG
* *
36102199 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36102263 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
36102278 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
36102340 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
36102358 ACCGGGCTATGTCCCGAAAGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36102382 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:36102390 original size:40 final size:39
Alignment explanation
Indices: 36102200--36102383 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
36102190 CGAATGATGT
* * * *
36102200 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
36102240 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
36102280 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36102318 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
36102359 CCGGGCTATGTCCCGAAAGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36102384 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36102405 original size:79 final size:79
Alignment explanation
Indices: 36102252--36102406 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
36102242 GGACTAAGAT
* * **
36102252 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
36102317 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
36102331 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAAGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAAGCATTGGAACGAGTTA-C
*
36102394 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
36102407 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:36110046 original size:39 final size:40
Alignment explanation
Indices: 36109946--36110122 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
36109936 TCGAATGATG
* * * * *
36109946 TCCGGGATAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
36109986 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36110026 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36110065 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36110106 -CCGGGCTATGTCCCGAA
1 TCCGGGCTAAGTCCCGAA
36110123 AGCTTTTGAA
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.30
40 71 0.62
41 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36110144 original size:40 final size:40
Alignment explanation
Indices: 36110028--36110137 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 40
36110018 TTACTAATTT
* * **
36110028 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAAGCATTTGAACGAGTTACTATAA-C
* * *
36110067 CGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAAGCATTTGAACGAGTTACTATAAC
* *
36110107 CGGGCTATGTCCCGAAAGCTTTTGAACGAGT
1 CGGGCTAAGTCCCGAAAGCATTTGAACGAGT
36110138 AGCTATATCC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 8 0.13
40 51 0.84
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAAGCATTTGAACGAGTTACTATAAC
Found at i:36110152 original size:79 final size:79
Alignment explanation
Indices: 36109999--36110163 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
36109989 GGACTAAGAT
* ** * **
36109999 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
*
36110064 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
36110078 CCGAAGGCATTTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAAGCTTTTGAACGAG-TAGC
1 CCGAAGGCATTTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAAGCATTGGAACGAGTTA-C
* *
36110141 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36110157 CCGAAGG
1 CCGAAGG
36110164 TACGTGATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.66
80 22 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36112725 original size:47 final size:47
Alignment explanation
Indices: 36112662--36112867 Score: 340
Period size: 47 Copynumber: 4.4 Consensus size: 47
36112652 CCCTTCGGGA
* * *
36112662 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
36112709 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * *
36112756 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
36112803 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
36112850 CTTATCACATATACACAC
1 CTTATCACATATATACAC
36112868 CTTGTACATC
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 150 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
Found at i:36112823 original size:94 final size:94
Alignment explanation
Indices: 36112662--36112867 Score: 376
Period size: 94 Copynumber: 2.2 Consensus size: 94
36112652 CCCTTCGGGA
*
36112662 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
36112727 TTTCACATCCATCACATCGGCCATTAGGC
66 TTTCACATCCATCACATCGGCCATTAGGC
*
36112756 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
36112821 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATCCATCACATCGGCCATTAGGC
*
36112850 CTTATCACATATACACAC
1 CTTATCACATATATACAC
36112868 CTTGTACATC
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 108 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATCCATCACATCGGCCATTAGGC
Found at i:36116106 original size:21 final size:20
Alignment explanation
Indices: 36116082--36116151 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
36116072 ATGAGAGCTA
36116082 AACAGAAACCCATAAGGGTT
1 AACAGAAACCCATAAGGGTT
* ** *
36116102 GAACAGAAGCTTATAAGAGCTT
1 -AACAGAAACCCATAAG-GGTT
*
36116124 AACGGAAACCCATAAGGGTT
1 AACAGAAACCCATAAGGGTT
36116144 AAACAGAA
1 -AACAGAA
36116152 GCTCAATAGA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
20 3 0.08
21 31 0.84
22 3 0.08
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (20 bp):
AACAGAAACCCATAAGGGTT
Found at i:36116111 original size:42 final size:42
Alignment explanation
Indices: 36116064--36116215 Score: 189
Period size: 42 Copynumber: 3.6 Consensus size: 42
36116054 AAGGCTGAAT
* *
36116064 AGAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGTTGAAC
1 AGAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTAAAC
* * *
36116106 AGAAGCTTATAAGAGCTTAACGGAAACCCATAAGGGTTAAAC
1 AGAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTAAAC
* * * * *
36116148 AGAAGCTCAAT-AGAGATGAACGGAAACTCATATGAGTTAAAC
1 AGAAGCTC-ATGAGAGCTAAACGGAAACCCATAAGGGTTAAAC
*
36116190 AGAAGCTCGTGAGAGCTAAACGGAAA
1 AGAAGCTCATGAGAGCTAAACGGAAA
36116216 GTTTGCAACA
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 91 0.97
43 2 0.02
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.16
Consensus pattern (42 bp):
AGAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTAAAC
Found at i:36117663 original size:14 final size:15
Alignment explanation
Indices: 36117636--36117664 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36117626 GTTTTTTGGG
36117636 ACGATTTGGGATTTC
1 ACGATTTGGGATTTC
36117651 ACGATTT-GGATTTC
1 ACGATTTGGGATTTC
36117665 TTTAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.21, C:0.14, G:0.24, T:0.41
Consensus pattern (15 bp):
ACGATTTGGGATTTC
Found at i:36117686 original size:18 final size:17
Alignment explanation
Indices: 36117665--36117703 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
36117655 TTTGGATTTC
36117665 TTTAATTATT-TATTTCTT
1 TTTAATT-TTATATTT-TT
36117683 TTTAATTTTATATTTTT
1 TTTAATTTTATATTTTT
36117700 TTTA
1 TTTA
36117704 CACTTCATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTAATTTTATATTTTT
Found at i:36119584 original size:21 final size:20
Alignment explanation
Indices: 36119550--36119590 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
36119540 AGGCAATTTT
*
36119550 GTAATTAAAGTGAAATTAAA
1 GTAATTAAAGTGAAAGTAAA
*
36119570 GTAATTTAGAGTGAAAGTAAA
1 GTAA-TTAAAGTGAAAGTAAA
36119591 ACATTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (20 bp):
GTAATTAAAGTGAAAGTAAA
Found at i:36123064 original size:20 final size:20
Alignment explanation
Indices: 36123035--36123085 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
36123025 TATGGACCTG
36123035 GGACACGCCCGGTGGCCATA
1 GGACACGCCCGGTGGCCATA
*
36123055 GGACATGCCCGGTGGCCATA
1 GGACACGCCCGGTGGCCATA
*
36123075 GGACACACCCG
1 GGACACGCCCG
36123086 TGTCTCAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.22, C:0.35, G:0.33, T:0.10
Consensus pattern (20 bp):
GGACACGCCCGGTGGCCATA
Found at i:36126735 original size:48 final size:47
Alignment explanation
Indices: 36126622--36126791 Score: 215
Period size: 48 Copynumber: 3.6 Consensus size: 47
36126612 CGAGGCTGAC
* *
36126622 GCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATTCGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CAC-CTCATA-T-GTGCCGAT
36126672 GCCATGTCCCAGACATGGTCTTACACTGACACCTCTATATGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACACCTC-ATATGTGCCGAT
* *
36126720 GCCATGTCCCAGACATGGTCTTACACTGACACATC-T-CGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACACCTCATATGT-GCCGAT
36126766 G-CATGTCCCAGACAT-GTCTTACACTG
1 GCCATGTCCCAGACATGGTCTTACACTG
36126792 GCTTACATCT
Statistics
Matches: 113, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
44 11 0.10
45 16 0.14
46 8 0.07
48 42 0.37
49 3 0.03
50 32 0.28
51 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACACCTCATATGTGCCGAT
Found at i:36126800 original size:46 final size:48
Alignment explanation
Indices: 36126624--36126885 Score: 237
Period size: 46 Copynumber: 5.6 Consensus size: 48
36126614 AGGCTGACGC
* *
36126624 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCG--TGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-T-ACAT-CTCGTATGCCGATG
* * *
36126673 CCATGTCCCAGACATGGTCTTACACTGAC--ACCTCT-ATATGTGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA--TGCCGATG
*
36126721 CCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-GCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTATGCCGATG
*
36126767 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTATGCCGATG
* * * * * *
36126813 TATGTCCTAGACAT-GCCTTACACTAGCTCT-CGTCTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGTATGCCGATG
36126859 CATGTCCCAGACAT-GTCTTACACTGGC
1 CATGTCCCAGACATGGTCTTACACTGGC
36126886 ACATAAATAA
Statistics
Matches: 184, Mismatches: 18, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
44 12 0.07
45 16 0.09
46 85 0.46
47 1 0.01
48 42 0.23
49 2 0.01
50 26 0.14
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTATGCCGATG
Found at i:36131862 original size:31 final size:28
Alignment explanation
Indices: 36131827--36131917 Score: 101
Period size: 31 Copynumber: 3.0 Consensus size: 28
36131817 TTTATGTATC
36131827 ATTATATTAAATTATTTAAATATTTCATATT
1 ATTATATTAAATT-TTTAAATATTT--TATT
36131858 ATTATATTAAATTGTTTAAATATAATTTATT
1 ATTATATTAAATT-TTTAAATAT--TTTATT
*
36131889 ATTATATTTAAGTTTTTAAAATATTTTAT
1 ATTATA-TTAAATTTTT-AAATATTTTAT
36131918 GTTTCATTAA
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
30 5 0.09
31 35 0.65
32 12 0.22
33 2 0.04
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (28 bp):
ATTATATTAAATTTTTAAATATTTTATT
Found at i:36133171 original size:16 final size:16
Alignment explanation
Indices: 36133150--36133184 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
36133140 GCACTTTGAC
36133150 TAAAATTAATAGGCTG
1 TAAAATTAATAGGCTG
36133166 TAAAATTAATAGGCTG
1 TAAAATTAATAGGCTG
36133182 TAA
1 TAA
36133185 GACTTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (16 bp):
TAAAATTAATAGGCTG
Found at i:36138620 original size:17 final size:18
Alignment explanation
Indices: 36138598--36138631 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
36138588 CGACCGCAAC
36138598 AAACGCGA-CGCGACCGA
1 AAACGCGACCGCGACCGA
36138615 AAACGCGACCGCGACCG
1 AAACGCGACCGCGACCG
36138632 CAATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.32, C:0.38, G:0.29, T:0.00
Consensus pattern (18 bp):
AAACGCGACCGCGACCGA
Found at i:36140136 original size:20 final size:21
Alignment explanation
Indices: 36140111--36140151 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
36140101 ATATTTTTTA
36140111 AATTTTTA-AAAATATTAATT
1 AATTTTTATAAAATATTAATT
*
36140131 AATTTTTATAAGATATTAATT
1 AATTTTTATAAAATATTAATT
36140152 TCACAGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AATTTTTATAAAATATTAATT
Found at i:36142756 original size:13 final size:12
Alignment explanation
Indices: 36142724--36142752 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
36142714 CCAGTTTTTT
36142724 AAAAATTAATAA
1 AAAAATTAATAA
36142736 AAAAATTAATAA
1 AAAAATTAATAA
36142748 AAAAA
1 AAAAA
36142753 ATTATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAATTAATAA
Found at i:36143675 original size:20 final size:20
Alignment explanation
Indices: 36143652--36143690 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
36143642 ATTTTTACAT
36143652 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
36143672 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
36143691 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:36154221 original size:19 final size:19
Alignment explanation
Indices: 36154197--36154234 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36154187 ATATTTTTAG
* *
36154197 TATTTTTGATAATTATATA
1 TATTTTTAAAAATTATATA
36154216 TATTTTTAAAAATTATATA
1 TATTTTTAAAAATTATATA
36154235 AATAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
TATTTTTAAAAATTATATA
Found at i:36156420 original size:29 final size:30
Alignment explanation
Indices: 36156388--36156450 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
36156378 AATTAAAAAA
36156388 ACTAAATTATTGAA-AAT-AAAAATACATAC
1 ACTAAATTATT-AATAATAAAAAATACATAC
* *
36156417 ACTAAATTCTTAATTTATAAAAAATACATAC
1 ACTAAATTATTAA-TAATAAAAAATACATAC
36156448 ACT
1 ACT
36156451 TATACTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 2 0.07
29 10 0.34
30 2 0.07
31 15 0.52
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.32
Consensus pattern (30 bp):
ACTAAATTATTAATAATAAAAAATACATAC
Found at i:36160922 original size:18 final size:17
Alignment explanation
Indices: 36160899--36160933 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
36160889 ATTGATAAAT
36160899 TTTATTTTATTATTTTAA
1 TTTATTTTATT-TTTTAA
36160917 TTTATTTTATTTTTTAA
1 TTTATTTTATTTTTTAA
36160934 AATTAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATTTTATTTTTTAA
Found at i:36164708 original size:15 final size:15
Alignment explanation
Indices: 36164688--36164717 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36164678 TTTAATCCTT
*
36164688 TACAAATTATAAAAA
1 TACAAACTATAAAAA
36164703 TACAAACTATAAAAA
1 TACAAACTATAAAAA
36164718 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (15 bp):
TACAAACTATAAAAA
Found at i:36164941 original size:17 final size:17
Alignment explanation
Indices: 36164919--36164989 Score: 51
Period size: 17 Copynumber: 4.2 Consensus size: 17
36164909 CAAATACCCG
36164919 TATTTATATATTTAAAA
1 TATTTATATATTTAAAA
*
36164936 TATTTAT-TA--TGAAA
1 TATTTATATATTTAAAA
* *
36164950 TATCTATGATTTTTTAAAA
1 TATTTAT-A-TATTTAAAA
*
36164969 TATATATAT-TATTAAAA
1 TATTTATATAT-TTAAAA
36164986 TATT
1 TATT
36164990 AATAAATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
14 10 0.24
16 3 0.07
17 18 0.43
18 1 0.02
19 10 0.24
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (17 bp):
TATTTATATATTTAAAA
Found at i:36165169 original size:28 final size:29
Alignment explanation
Indices: 36165119--36165179 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
36165109 GTATGTTTAA
36165119 TAATATTGAAAATTATAACATTTGATT-T
1 TAATATTGAAAATTATAACATTTGATTAT
* * *
36165147 TAATATTGTTAAATTTTAA-ATTTTATTAT
1 TAATATTG-AAAATTATAACATTTGATTAT
36165176 TAAT
1 TAAT
36165180 TTAATAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (29 bp):
TAATATTGAAAATTATAACATTTGATTAT
Found at i:36165829 original size:19 final size:19
Alignment explanation
Indices: 36165807--36165845 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36165797 TTTAGATATC
*
36165807 TATTTCATTT-TAAATAGTA
1 TATTTAATTTCTAAA-AGTA
36165826 TATTTAATTTCTAAAAGTA
1 TATTTAATTTCTAAAAGTA
36165845 T
1 T
36165846 TGATGAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (19 bp):
TATTTAATTTCTAAAAGTA
Found at i:36167156 original size:23 final size:23
Alignment explanation
Indices: 36167130--36167175 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
36167120 TTAAATTGTC
36167130 AAATAATTATATATAAACTATGA
1 AAATAATTATATATAAACTATGA
36167153 AAATAATTATATATAAACTATGA
1 AAATAATTATATATAAACTATGA
36167176 CACGTTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (23 bp):
AAATAATTATATATAAACTATGA
Found at i:36167270 original size:21 final size:21
Alignment explanation
Indices: 36167231--36167270 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
36167221 GATAAGAATT
* *
36167231 TAGAATTGAGTTTTTTAATGC
1 TAGAATTGAGTATTATAATGC
*
36167252 TAGAATTTAGTATTATAAT
1 TAGAATTGAGTATTATAAT
36167271 TAAAGCATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (21 bp):
TAGAATTGAGTATTATAATGC
Found at i:36168236 original size:22 final size:22
Alignment explanation
Indices: 36168207--36168261 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
36168197 TAACTAAATT
* *
36168207 TAAAAAAATTAAGGACC-AATA
1 TAAAAAAATTAAGAACCAAAAA
36168228 TAATAAAAATT-AGAACCAAAAA
1 TAA-AAAAATTAAGAACCAAAAA
36168250 TAAAAAAATTAA
1 TAAAAAAATTAA
36168262 AAGAATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.67, C:0.07, G:0.05, T:0.20
Consensus pattern (22 bp):
TAAAAAAATTAAGAACCAAAAA
Found at i:36168245 original size:21 final size:20
Alignment explanation
Indices: 36168210--36168255 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 20
36168200 CTAAATTTAA
*
36168210 AAAAATTAAGGACCAATATAAT
1 AAAAATTAAGAACCAA-A-AAT
36168232 AAAAATT-AGAACCAAAAAT
1 AAAAATTAAGAACCAAAAAT
36168251 AAAAA
1 AAAAA
36168256 AATTAAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 1 0.04
21 7 0.30
22 7 0.30
ACGTcount: A:0.67, C:0.09, G:0.07, T:0.17
Consensus pattern (20 bp):
AAAAATTAAGAACCAAAAAT
Found at i:36168444 original size:7 final size:8
Alignment explanation
Indices: 36168426--36168464 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
36168416 TTAATTCATC
36168426 AAAATATA
1 AAAATATA
36168434 AAAATATA
1 AAAATATA
*
36168442 AAAAAATTA
1 AAAATA-TA
36168451 AAAATATA
1 AAAATATA
36168459 AAAATA
1 AAAATA
36168465 ATATAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAATATA
Found at i:36168446 original size:17 final size:17
Alignment explanation
Indices: 36168426--36168462 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 17
36168416 TTAATTCATC
36168426 AAAATATAAAAATATAAA
1 AAAAT-TAAAAATATAAA
36168444 AAAATTAAAAATATAAA
1 AAAATTAAAAATATAAA
36168461 AA
1 AA
36168463 TAATATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAATTAAAAATATAAA
Found at i:36168472 original size:17 final size:17
Alignment explanation
Indices: 36168426--36168472 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
36168416 TTAATTCATC
36168426 AAAAT-ATAAAAATATA
1 AAAATAATAAAAATATA
36168442 AAAA-AATTAAAAATATA
1 AAAATAA-TAAAAATATA
*
36168459 AAAATAATATAAAT
1 AAAATAATAAAAAT
36168473 TACAAGACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 5 0.19
17 20 0.74
18 2 0.07
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATAATAAAAATATA
Found at i:36176987 original size:40 final size:40
Alignment explanation
Indices: 36176925--36177102 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
36176915 AAACCAAGTA
* *
36176925 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
36176964 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36177004 CCTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36177044 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
36177084 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36177103 TTACCATCCG
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 14 0.11
40 113 0.89
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36185024 original size:40 final size:40
Alignment explanation
Indices: 36184954--36185171 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
36184944 AAACCAAGTA
* * *
36184954 CCTTCGGGATTTAG-CCGGATTTAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
36184993 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
36185033 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36185073 CCTTCGGGACTTATCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36185113 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
36185153 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36185172 TTACCATCCG
Statistics
Matches: 167, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 15 0.09
40 152 0.91
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36188043 original size:131 final size:130
Alignment explanation
Indices: 36187899--36188291 Score: 466
Period size: 131 Copynumber: 3.0 Consensus size: 130
36187889 AAATCAATTG
* * * * * * *
36187899 ACTCAAATAAAATTATTCATAATCTTGAAATTATTGAACTTAGGTTGCTATCTTGAATTAGTGAA
1 ACTCGAATAAAATTGTTCATGATCTTG-AATTAATGAACTTAGGTTGCAATCTTGAATCAGAGAA
* * * * * **
36187964 CCTTAATAATATCAACCACGATCTTAAATCAACGAGTTGTTCAAAGTAACGATATTAAATTAGCT
65 CCTTAATAATATCAACAACGATATTAAATTAGCGAGATGTTTGAAGTAACGATATTAAATTAGCT
36188029 A
130 A
*
36188030 ACTCGAATAAAATTGTTCATGATTTTGAATCTAATGAACTTAGGTTGCAATCTTGAATCAGAGAA
1 ACTCGAATAAAATTGTTCATGATCTTGAAT-TAATGAACTTAGGTTGCAATCTTGAATCAGAGAA
* * * * * *
36188095 CCTTAATAATATCAA-AAGTGGTATTAAATTAGCGAGATGTTTGCAGTAGCAATATTAAATCAGC
65 CCTTAATAATATCAACAA-CGATATTAAATTAGCGAGATGTTTGAAGTAACGATATTAAATTAGC
36188159 TA
129 TA
* * *
36188161 ACTCGAATAAAATTGGTGATGATCTTGAATTGAATGAACTTAAGTTGCAATCTTGAATCA-ACGA
1 ACTCGAATAAAATTGTTCATGATCTTGAATT-AATGAACTTAGGTTGCAATCTTGAATCAGA-GA
* * * * *
36188225 ACCTTAATAATATCAACTACGATATTAAATTAGCGAGCTGTTTGGAGTAATGATCTTAAATTAGC
64 ACCTTAATAATATCAACAACGATATTAAATTAGCGAGATGTTTGAAGTAACGATATTAAATTAGC
36188290 TA
129 TA
36188292 TCACAAAGAG
Statistics
Matches: 222, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
130 6 0.03
131 215 0.97
132 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (130 bp):
ACTCGAATAAAATTGTTCATGATCTTGAATTAATGAACTTAGGTTGCAATCTTGAATCAGAGAAC
CTTAATAATATCAACAACGATATTAAATTAGCGAGATGTTTGAAGTAACGATATTAAATTAGCTA
Found at i:36191224 original size:42 final size:43
Alignment explanation
Indices: 36191142--36191327 Score: 188
Period size: 42 Copynumber: 4.4 Consensus size: 43
36191132 CAACGTCTCG
* * * * *
36191142 GACATGGTCTTACATGT-AATTCAGTATTGATGCCTCTGTCCCA
1 GACACGGTCTTACACGTAAATTCAATA-CGATGCCTGTGTCCCA
* *
36191185 GACAGGGTCTTATACG-AAA-TCAGATACGATGCC-GATGTCCCA
1 GACACGGTCTTACACGTAAATTCA-ATACGATGCCTG-TGTCCCA
* *
36191227 GACATGGTCTTACACGTAAATTTCAATTCGATGCCTGTGTCCCA
1 GACACGGTCTTACACGTAAA-TTCAATACGATGCCTGTGTCCCA
*
36191271 GA-ACGGTCTT-CACGTAAATTTCAATTCGATGCCTGTGTCCCA
1 GACACGGTCTTACACGTAAA-TTCAATACGATGCCTGTGTCCCA
36191313 GA-ACGGTCTTACACG
1 GACACGGTCTTACACG
36191328 ATAGTTCAGA
Statistics
Matches: 125, Mismatches: 10, Indels: 16
0.83 0.07 0.11
Matches are distributed among these distances:
42 72 0.58
43 31 0.25
44 18 0.14
45 4 0.03
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (43 bp):
GACACGGTCTTACACGTAAATTCAATACGATGCCTGTGTCCCA
Found at i:36191302 original size:86 final size:84
Alignment explanation
Indices: 36191142--36191338 Score: 208
Period size: 85 Copynumber: 2.3 Consensus size: 84
36191132 CAACGTCTCG
* * *
36191142 GACATGGTCTTACATGTAATTCAGTATTGATGCCTCTGTCCCAGACAGGGTCTTATACGAAATCA
1 GACATGGTCTTACACGTAATTCAG-ATTGATGCCTCTGTCCCAGACACGGTCTTACACGAAATCA
36191207 GATACGATGCC-GATGTCCCA
65 GATACGATGCCTG-TGTCCCA
*
36191227 GACATGGTCTTACACGTAAATTTCA-ATTCGATGCCTGTGTCCCAGA-ACGGTCTT-CACGTAAA
1 GACATGGTCTTACACGT-AA-TTCAGATT-GATGCCTCTGTCCCAGACACGGTCTTACACG-AAA
*
36191289 TTTCA-ATTCGATGCCTGTGTCCCA
62 --TCAGATACGATGCCTGTGTCCCA
* *
36191313 GA-ACGGTCTTACACGATAGTTCAGAT
1 GACATGGTCTTACACG-TAATTCAGAT
36191339 CAATACCAAC
Statistics
Matches: 96, Mismatches: 7, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
84 7 0.07
85 44 0.46
86 37 0.39
87 8 0.08
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (84 bp):
GACATGGTCTTACACGTAATTCAGATTGATGCCTCTGTCCCAGACACGGTCTTACACGAAATCAG
ATACGATGCCTGTGTCCCA
Found at i:36194141 original size:48 final size:48
Alignment explanation
Indices: 36194070--36194551 Score: 784
Period size: 48 Copynumber: 10.0 Consensus size: 48
36194060 CAAGATAAAT
* * *
36194070 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
36194118 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
36194166 ATATACATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
36194214 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
36194262 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
36194310 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
36194358 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
36194406 ATATGTACATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
36194454 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
36194502 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
36194550 AT
1 AT
36194552 GTGTGTATAT
Statistics
Matches: 403, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 403 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:36194742 original size:37 final size:37
Alignment explanation
Indices: 36194692--36194794 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
36194682 GGAAATATAT
36194692 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36194729 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
36194766 TCTGGGTGAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
36194795 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36196875 original size:27 final size:24
Alignment explanation
Indices: 36196781--36196893 Score: 95
Period size: 27 Copynumber: 4.3 Consensus size: 24
36196771 AACACTCCAG
*
36196781 GAAAGGAACACCTTTGTGGAATAATAT
1 GAAAGGAACA-CTTTGTGG--CAATAT
36196808 GAAAGGAATGCA-TTTGTGGCAATAT
1 GAAAGGAA--CACTTTGTGGCAATAT
*
36196833 GAAAGGAACACCTTGTGGCGTAATATT
1 GAAAGGAACACTTTGTGGC--AATA-T
36196860 GAAA-GAACACTTTTGTGGCAGATTAT
1 GAAAGGAACAC-TTTGTGGCA-A-TAT
36196886 GAAAGGAA
1 GAAAGGAA
36196894 TTCTTTTGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 20
0.76 0.03 0.21
Matches are distributed among these distances:
23 2 0.03
24 7 0.10
25 14 0.19
26 16 0.22
27 32 0.44
29 2 0.03
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.26
Consensus pattern (24 bp):
GAAAGGAACACTTTGTGGCAATAT
Found at i:36196875 original size:51 final size:54
Alignment explanation
Indices: 36196781--36196893 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 54
36196771 AACACTCCAG
**
36196781 GAAAGGAACACCTTTGTGGAATAATATGAAAGGAATGCATTTGTGGCA-A-TAT
1 GAAAGGAACACCTTTGTGGAATAATATGAAAGGAACACATTTGTGGCAGATTAT
** *
36196833 GAAAGGAACACC-TTGTGGCGTAATATTGAAA-GAACACTTTTGTGGCAGATTAT
1 GAAAGGAACACCTTTGTGGAATAATA-TGAAAGGAACACATTTGTGGCAGATTAT
36196886 GAAAGGAA
1 GAAAGGAA
36196894 TTCTTTTGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
51 24 0.45
52 18 0.34
53 11 0.21
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.26
Consensus pattern (54 bp):
GAAAGGAACACCTTTGTGGAATAATATGAAAGGAACACATTTGTGGCAGATTAT
Found at i:36201517 original size:47 final size:47
Alignment explanation
Indices: 36201400--36201694 Score: 394
Period size: 47 Copynumber: 6.2 Consensus size: 47
36201390 AATTCTAAAT
36201400 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
36201449 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
36201496 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* * *
36201545 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTCTATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
36201592 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
36201639 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
36201685 GTGTGATAAG
1 -TGTGATAAG
36201695 TCCCGAAGGG
Statistics
Matches: 218, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
46 1 0.00
47 134 0.61
49 83 0.38
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:36201547 original size:96 final size:96
Alignment explanation
Indices: 36201400--36201694 Score: 450
Period size: 96 Copynumber: 3.1 Consensus size: 96
36201390 AATTCTAAAT
36201400 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
36201465 GGCCGATGTGATGAATGTGAAAGTGTATATG
66 GGCCGATGTGATGAATGTGAAAGTGTATATG
* *
36201496 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
*
36201561 GGCCGATGTGATGAATGTGAAAGTGTCTATG
66 GGCCGATGTGATGAATGTGAAAGTGTATATG
* * * * ** *
36201592 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
* * * *
36201655 GGCCAATGTGATGGATGTGAAAGTGCATAAG
66 GGCCGATGTGATGAATGTGAAAGTGTATATG
36201686 TGTGATAAG
1 TGTGATAAG
36201695 TCCCGAAGGG
Statistics
Matches: 181, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
94 51 0.28
96 130 0.72
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATG
Found at i:36201572 original size:22 final size:22
Alignment explanation
Indices: 36201544--36201619 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
36201534 GTGTATATAT
36201544 ATGTGATAAGGCTTAATGGCCG
1 ATGTGATAAGGCTTAATGGCCG
* * * * *
36201566 ATGTGATGAATG-TGAAAGTGTCT
1 ATGTGAT-AAGGCTTAATG-GCCG
36201589 ATGCGTGATAAGGCTTAATGGCCG
1 AT--GTGATAAGGCTTAATGGCCG
36201613 ATGTGAT
1 ATGTGAT
36201620 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 16 0.41
23 7 0.18
24 7 0.18
25 9 0.23
ACGTcount: A:0.28, C:0.11, G:0.32, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCTTAATGGCCG
Found at i:36204055 original size:21 final size:21
Alignment explanation
Indices: 36204031--36204073 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
36204021 ACTGTCAAGC
36204031 TATCGTTATTGATGTAAGTGA
1 TATCGTTATTGATGTAAGTGA
36204052 TATCGTTATTGATGTAAGTGA
1 TATCGTTATTGATGTAAGTGA
36204073 T
1 T
36204074 TTCAAGTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (21 bp):
TATCGTTATTGATGTAAGTGA
Found at i:36211172 original size:43 final size:44
Alignment explanation
Indices: 36211015--36211173 Score: 159
Period size: 43 Copynumber: 3.7 Consensus size: 44
36211005 GGTGTGATAT
* * *
36211015 CGTGTAAGACCACGTCTGGGACGTTGTCATTG--ATTTGAAATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTG-AA-TTA
* * *
36211059 CGTGTAAGACCATGTATGGGACATTGGCATC-ATATATGAATT-
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGAATTA
* * *
36211101 TGTGTAAGACCCTGTCTGGGGCAG-TGGCATCGATATTTG-ATTA
1 CGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGAATTA
*
36211144 CATGTAAGACCATGTCTGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
36211174 TGTACGAGTT
Statistics
Matches: 93, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 29 0.31
43 32 0.34
44 28 0.30
45 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGAATTA
Found at i:36219924 original size:13 final size:13
Alignment explanation
Indices: 36219906--36219932 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36219896 AGAGTAATCG
36219906 CACACGGGCGTGT
1 CACACGGGCGTGT
36219919 CACACGGGCGTGT
1 CACACGGGCGTGT
36219932 C
1 C
36219933 CTTGCTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:36221070 original size:14 final size:14
Alignment explanation
Indices: 36221051--36221089 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
36221041 TAAATTTTTA
36221051 TTTTCTTTTCTAAG
1 TTTTCTTTTCTAAG
36221065 TTTTCTTTTCTAAG
1 TTTTCTTTTCTAAG
36221079 TTTTCTTTTCT
1 TTTTCTTTTCT
36221090 TCGTTCCTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.10, C:0.15, G:0.05, T:0.69
Consensus pattern (14 bp):
TTTTCTTTTCTAAG
Found at i:36232452 original size:40 final size:40
Alignment explanation
Indices: 36232240--36232445 Score: 351
Period size: 40 Copynumber: 5.2 Consensus size: 40
36232230 AACCCAAGTA
* *
36232240 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36232279 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36232319 CCTTCAGGACTTAGCCCGGATATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
36232359 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36232399 CCTTCGGGACTTAGCCCGGATAAAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
36232439 CCTTCGG
1 CCTTCGG
36232446 ATCTTAGTCT
Statistics
Matches: 157, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.08
40 144 0.92
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36236795 original size:25 final size:25
Alignment explanation
Indices: 36236766--36236813 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36236756 TTATAATATG
* * *
36236766 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36236791 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36236814 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36236939 original size:20 final size:20
Alignment explanation
Indices: 36236850--36236931 Score: 139
Period size: 20 Copynumber: 4.2 Consensus size: 20
36236840 ATTTTGATAA
36236850 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36236870 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
36236890 AGATGACAT-TATGATATGC
1 ACATGATATGTATGATATGC
36236909 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36236929 ACA
1 ACA
36236932 CGAGATGTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
19 17 0.30
20 40 0.70
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36237054 original size:47 final size:47
Alignment explanation
Indices: 36236985--36237082 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
36236975 AGGAAGTGCA
36236985 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
36237032 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
36237080 AAA
1 AAA
36237083 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:36237099 original size:25 final size:24
Alignment explanation
Indices: 36236984--36237103 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
36236974 GAGGAAGTGC
36236984 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36237008 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36237032 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36237055 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
36237080 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36237104 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 29 0.33
24 30 0.34
25 21 0.24
26 9 0.10
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36237331 original size:31 final size:31
Alignment explanation
Indices: 36237296--36237359 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36237286 CGTTTACCGT
36237296 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
36237327 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36237358 AA
1 AA
36237360 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36239384 original size:39 final size:40
Alignment explanation
Indices: 36239289--36239511 Score: 255
Period size: 39 Copynumber: 5.7 Consensus size: 40
36239279 TTGAATGATG
* * *
36239289 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGACAAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36239328 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36239368 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36239407 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36239446 TACGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
36239485 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36239512 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
39 92 0.57
40 60 0.37
41 8 0.05
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36239472 original size:79 final size:79
Alignment explanation
Indices: 36239291--36239511 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 79
36239281 GAATGATGTC
* * * *
36239291 CGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AAAATCCGGACTAAGAT-CCGAAGGCATT
1 CGGGCTAAG-CCCGAAGGCATTTGTGCGAA-TTACTATAA-CCGGGCTAAG-TCCCGAAGGCATT
* *
36239352 TGTGCGAGATACTAATTC
62 TGTGCGAGATACTAAATA
*
36239370 CGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTG
1 CGGGCTAAGCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCATTTG
*
36239432 TGCGAGTTACTAAATA
64 TGCGAGATACTAAATA
* *
36239448 CGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
36239512 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 10, Indels: 19
0.81 0.07 0.13
Matches are distributed among these distances:
78 44 0.36
79 54 0.44
80 23 0.19
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGATACTAAATA
Found at i:36239533 original size:79 final size:79
Alignment explanation
Indices: 36239341--36239544 Score: 188
Period size: 79 Copynumber: 2.6 Consensus size: 79
36239331 GGACTAAGAT
** * *
36239341 CCGAAGGCATTTGTGCGAGAT-ACT-AATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATACC-GGTTAAGTCCCGAAGGCATTTGTGCGAGATAC
*
36239403 TAATTCCGGGCTAAGC
64 TAATACCGGGCTAAGC
** * *
36239419 CCGAAGGCATTTGTGCGAGTTACTAAATACGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATACCGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
36239483 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
36239499 CCGAAGGCATTTGAACGAG-GAGCTATAT-CCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATACCGGTTAAGTCCCGAAGG
36239545 TACGTGATTT
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
77 1 0.01
78 31 0.29
79 52 0.49
80 23 0.21
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATACCGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:36246789 original size:40 final size:40
Alignment explanation
Indices: 36246605--36246827 Score: 260
Period size: 39 Copynumber: 5.7 Consensus size: 40
36246595 TTGAATGATG
* * * *
36246605 TCCGGGCTAAGTCCCAAAGGC--TTGTGCTAAGTGACAAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36246644 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36246684 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
36246723 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36246762 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36246803 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36246828 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 90 0.56
40 64 0.40
41 8 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36246849 original size:79 final size:79
Alignment explanation
Indices: 36246657--36246860 Score: 204
Period size: 79 Copynumber: 2.6 Consensus size: 79
36246647 GGACTAAGAT
** * * *
36246657 CCGAAGGCATTTGTGCGAGAT-ACTAATTTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
36246720 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** *
36246735 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
36246799 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
36246815 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
36246861 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 36 0.33
79 47 0.43
80 25 0.23
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:36249711 original size:43 final size:42
Alignment explanation
Indices: 36249645--36249814 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 42
36249635 AACTCATACA
* *
36249645 ATGCCAATGTCCTAGAC-GAGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGAAATCAAATAT-G
* * * *
36249688 ATGCTATTGTCCCAGATAGGGTCTTACATGAAATCATATATG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATATG
* * *
36249730 ATGCCAATGTTCCAGACATGGTCTTACACAT-AAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACAGGGTCTT--ACATGAAA--TCAAATATG
* * * *
36249774 ATTCCAACGTCCCAGAC-GTGGTCTTACACGAAATCACATAT
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGAAATCAAATAT
36249815 CGGAATCCTA
Statistics
Matches: 99, Mismatches: 20, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
41 5 0.05
42 24 0.24
43 39 0.39
44 26 0.26
45 5 0.05
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATATG
Found at i:36250917 original size:13 final size:13
Alignment explanation
Indices: 36250899--36250923 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36250889 ACAAACGATA
36250899 AAATTTTCACATG
1 AAATTTTCACATG
36250912 AAATTTTCACAT
1 AAATTTTCACAT
36250924 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATTTTCACATG
Found at i:36257237 original size:33 final size:33
Alignment explanation
Indices: 36257197--36257271 Score: 141
Period size: 33 Copynumber: 2.2 Consensus size: 33
36257187 ATTAAGCCAA
36257197 TTTTCATGGCCATATACAAAAAGATAAACATAT
1 TTTTCATGGCCATATACAAAAAGATAAACATAT
36257230 TTTTCATGGCCATATACAAAAAGATAAACATAT
1 TTTTCATGGCCATATACAAAAAGATAAACATAT
36257263 TTTTACATG
1 TTTT-CATG
36257272 CCTTCATTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 37 0.90
34 4 0.10
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (33 bp):
TTTTCATGGCCATATACAAAAAGATAAACATAT
Found at i:36259793 original size:16 final size:16
Alignment explanation
Indices: 36259772--36259806 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
36259762 GAATTTGGAC
36259772 CTCGTAGTGACCGTAT
1 CTCGTAGTGACCGTAT
36259788 CTCGTAGTGACCGTAT
1 CTCGTAGTGACCGTAT
36259804 CTC
1 CTC
36259807 ATTCTGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.29, G:0.23, T:0.31
Consensus pattern (16 bp):
CTCGTAGTGACCGTAT
Found at i:36263032 original size:39 final size:40
Alignment explanation
Indices: 36262989--36263204 Score: 291
Period size: 39 Copynumber: 5.5 Consensus size: 40
36262979 CTTCGGAACT
* * ** * *
36262989 TTAAGCCCGGA-TATATTTCCAGCACGTAACCTGCGAACC
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
* *
36263028 TTAAGTTCAGATTATAATTCCAGCATATAGCCTGCGGACC
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
*
36263068 TTAAGTCCGGA-TATATTTCCAGCATATAGCCTGCGGACC
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
* *
36263107 TTAAGTCTGGA-TATAA-TCCAGCATATAGCCTGTGGA-C
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
36263144 TTAAGTCCGGATTATAATT-CAGCATATAGCCTGCGGACC
1 TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
36263183 TTAAGTCCGGATTATAATTCCA
1 TTAAGTCCGGATTATAATTCCA
36263205 AATATCATCC
Statistics
Matches: 156, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
37 11 0.07
38 41 0.26
39 70 0.45
40 34 0.22
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (40 bp):
TTAAGTCCGGATTATAATTCCAGCATATAGCCTGCGGACC
Found at i:36263170 original size:76 final size:78
Alignment explanation
Indices: 36262989--36263200 Score: 279
Period size: 76 Copynumber: 2.7 Consensus size: 78
36262979 CTTCGGAACT
* * ** * * *
36262989 TTAAGCCCGGATATATTTCCAGCACGTAACCTGCGAACCTTAAGT-TCAGATTATAATTCCAGCA
1 TTAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGTCT-GGATTATAA-TCCAGCA
36263053 TATAGCCTGCGGACC
64 TATAGCCTGCGGACC
*
36263068 TTAAGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTTAAGTCTGGA-TATAATCCAGCATA
1 TTAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGTCTGGATTATAATCCAGCATA
*
36263132 TAGCCTGTGGA-C
66 TAGCCTGCGGACC
*
36263144 TTAAGTCCGGATTATAATT-CAGCATATAGCCTGCGGACCTTAAGTCCGGATTATAAT
1 TTAAGTCCGGA-TATAATTCCAGCATATAGCCTGCGGACCTTAAGTCTGGATTATAAT
36263201 TCCAAATATC
Statistics
Matches: 121, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
76 42 0.35
77 31 0.26
78 5 0.04
79 42 0.35
80 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (78 bp):
TTAAGTCCGGATATAATTCCAGCATATAGCCTGCGGACCTTAAGTCTGGATTATAATCCAGCATA
TAGCCTGCGGACC
Found at i:36267664 original size:41 final size:43
Alignment explanation
Indices: 36267557--36267694 Score: 149
Period size: 43 Copynumber: 3.2 Consensus size: 43
36267547 ATATCGTACA
**
36267557 ATGCCAACT-TCCCAGATGTGGTCTTACATGCAATCACATATCG
1 ATGCCAA-TGTCCCAGACATGGTCTTACATGCAATCACATATCG
* * * * *
36267600 ATGCCACTATCCCAGACAGGGTCTTACACG-AATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATATCG
*
36267641 ATGCCAATGTCCC-GAACATGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAG-ACATGGTCTTACATGCAATCACATATCG
36267684 ATGCCCAATGT
1 ATG-CCAATGT
36267695 TCTAGACGTG
Statistics
Matches: 79, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
40 1 0.01
41 26 0.33
42 17 0.22
43 28 0.35
44 7 0.09
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATATCG
Found at i:36270847 original size:21 final size:21
Alignment explanation
Indices: 36270805--36270847 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
36270795 TATACCCACA
* *
36270805 TGGTGTGTTGGTTCGTACGGG
1 TGGTGTATTGGTTCGGACGGG
36270826 TGGTGTATTGGTT-GGACTGGG
1 TGGTGTATTGGTTCGGAC-GGG
36270847 T
1 T
36270848 TGGATATCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.07, C:0.07, G:0.47, T:0.40
Consensus pattern (21 bp):
TGGTGTATTGGTTCGGACGGG
Found at i:36270911 original size:27 final size:27
Alignment explanation
Indices: 36270880--36270941 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
36270870 CATCTGATAT
* *
36270880 TGATTCTG-TATTGGGCTTAGGCCCACC
1 TGATTCTGTTAATGGGCTAAGG-CCACC
36270907 TGATTCTGTTAATGGGCTAAGGCCACC
1 TGATTCTGTTAATGGGCTAAGGCCACC
36270934 TGATTCTG
1 TGATTCTG
36270942 GTTCAATGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 21 0.66
28 11 0.34
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.34
Consensus pattern (27 bp):
TGATTCTGTTAATGGGCTAAGGCCACC
Found at i:36272496 original size:16 final size:16
Alignment explanation
Indices: 36272475--36272509 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
36272465 TTTCTAAATA
36272475 CGAGGCAGAATTTTTG
1 CGAGGCAGAATTTTTG
36272491 CGAGGCAGAATTTTTG
1 CGAGGCAGAATTTTTG
36272507 CGA
1 CGA
36272510 CTTAGCCGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (16 bp):
CGAGGCAGAATTTTTG
Found at i:36278856 original size:15 final size:14
Alignment explanation
Indices: 36278841--36278870 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
36278831 GAAAAATATT
36278841 TTTC-GGAAAATGA
1 TTTCTGGAAAATGA
36278854 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
36278868 TTT
1 TTT
36278871 ACTTTTCGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:36288322 original size:31 final size:31
Alignment explanation
Indices: 36288284--36288345 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
36288274 TATACATAAA
36288284 ATAACTTTCTTTTTACTCATCAATACCTATC
1 ATAACTTTCTTTTTACTCATCAATACCTATC
*
36288315 ATAACTTTCTTTTTACTGATCAATACCTATC
1 ATAACTTTCTTTTTACTCATCAATACCTATC
36288346 TCACCTTATC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (31 bp):
ATAACTTTCTTTTTACTCATCAATACCTATC
Found at i:36292142 original size:14 final size:15
Alignment explanation
Indices: 36292123--36292152 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
36292113 CCTTGAACAA
36292123 ATTTTATTAAA-ATC
1 ATTTTATTAAACATC
36292137 ATTTTATTAAACATC
1 ATTTTATTAAACATC
36292152 A
1 A
36292153 ATAAAACACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTTATTAAACATC
Found at i:36302433 original size:21 final size:23
Alignment explanation
Indices: 36302407--36302452 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
36302397 ACCCACGCCC
*
36302407 CACGCCCGTGC-TCGCCAT-CAA
1 CACGCCCGTGCGCCGCCATACAA
36302428 CACGCCCGTGCGCCGCCATACAA
1 CACGCCCGTGCGCCGCCATACAA
36302451 CA
1 CA
36302453 GTTTTTGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.50
22 6 0.27
23 5 0.23
ACGTcount: A:0.22, C:0.48, G:0.20, T:0.11
Consensus pattern (23 bp):
CACGCCCGTGCGCCGCCATACAA
Found at i:36303978 original size:6 final size:6
Alignment explanation
Indices: 36303960--36304004 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
36303950 TCCTCTTATC
* * *
36303960 TTTTTA TTGTTA TTTTTA TTTTTA TTTTTC TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
36304005 CAATTTTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:36304011 original size:30 final size:31
Alignment explanation
Indices: 36303958--36304024 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
36303948 AATCCTCTTA
**
36303958 TCTTTTTATTGTTATTTTTA-TTT-TTATTTT
1 TCTTTTTATTGTTATTTCAATTTTATTA-TTT
36303988 TCTTTTTATT-TTCATTTCAATTTTATTATTT
1 TCTTTTTATTGTT-ATTTCAATTTTATTATTT
36304019 TCTTTT
1 TCTTTT
36304025 GAAAGACATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 2 0.06
30 15 0.47
31 12 0.38
32 3 0.09
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (31 bp):
TCTTTTTATTGTTATTTCAATTTTATTATTT
Found at i:36306938 original size:13 final size:13
Alignment explanation
Indices: 36306916--36306948 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
36306906 TTGCTTTAGT
36306916 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
36306928 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
*
36306941 TTACTTTA
1 TTAGTTTA
36306949 ATAAACAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.30, C:0.03, G:0.12, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:36315904 original size:79 final size:81
Alignment explanation
Indices: 36315795--36315977 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
36315785 TACTCGTTCA
* *
36315795 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
36315858 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
36315875 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
36315938 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
36315954 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
36315978 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:36315977 original size:40 final size:40
Alignment explanation
Indices: 36315774--36315977 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
36315764 CGGAATTTAA
** *
36315774 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36315814 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36315854 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36315893 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36315933 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36315973 CCGGA
1 CCGGA
36315978 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36324714 original size:5 final size:5
Alignment explanation
Indices: 36324692--36324782 Score: 98
Period size: 5 Copynumber: 17.6 Consensus size: 5
36324682 TCCTCCTATT
*
36324692 TTTTA -TTTA TTCTTA TTTTA TTTTA TTTTA TTTTA TTCTA TTTTTA TTTTTA
1 TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA
36324744 TTTTTA TTTTTA TTTTTA TTTTA TTTTA --TTA TTTTA TTT
1 -TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTT
36324783 GAAAGATATA
Statistics
Matches: 79, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
3 3 0.04
4 4 0.05
5 39 0.49
6 33 0.42
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:36324741 original size:6 final size:6
Alignment explanation
Indices: 36324688--36324770 Score: 90
Period size: 6 Copynumber: 15.0 Consensus size: 6
36324678 TGACTCCTCC
* * *
36324688 TATTTT T-TATT TATTCT TA-TTT TA-TTT TA-TTT TA-TTT TA-TTC
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
36324730 TATTTT TATTTT TATTTT TATTTT TATTTT TA-TTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
36324771 ATTATTTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
5 32 0.47
6 36 0.53
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:36329369 original size:14 final size:15
Alignment explanation
Indices: 36329352--36329380 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36329342 TTACGAAAAT
36329352 TTCACACAT-ATAAA
1 TTCACACATAATAAA
36329366 TTCACACATAATAAA
1 TTCACACATAATAAA
36329381 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:36336184 original size:6 final size:6
Alignment explanation
Indices: 36336175--36336253 Score: 106
Period size: 6 Copynumber: 12.8 Consensus size: 6
36336165 TATTAGAACT
36336175 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* *
36336223 AGTATC AGGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A--G-AATC AGAATC AGAATC AGAAT
36336254 GGGAATGCCA
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
5 2 0.03
6 59 0.91
8 3 0.05
9 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:36336728 original size:27 final size:26
Alignment explanation
Indices: 36336691--36336766 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 26
36336681 GTATCTCGGT
*
36336691 TAATTCCACCCTACAGGGGTATTTCGC
1 TAATTCTACCCTACAGGGGTATTT-GC
*
36336718 TAATTCTACCC--CAGGGGTATTTGG
1 TAATTCTACCCTACAGGGGTATTTGC
36336742 TAATTCTACCCCTACAGGGGTATTT
1 TAATTCTA-CCCTACAGGGGTATTT
36336767 TGGTAATGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.20
25 14 0.32
27 21 0.48
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
TAATTCTACCCTACAGGGGTATTTGC
Found at i:36336738 original size:25 final size:24
Alignment explanation
Indices: 36336704--36336753 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
36336694 TTCCACCCTA
36336704 CAGGGGTATTTCGCTAATTCTACCC
1 CAGGGGTATTT-GCTAATTCTACCC
*
36336729 CAGGGGTATTTGGTAATTCTACCC
1 CAGGGGTATTTGCTAATTCTACCC
36336753 C
1 C
36336754 TACAGGGGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (24 bp):
CAGGGGTATTTGCTAATTCTACCC
Found at i:36336750 original size:24 final size:26
Alignment explanation
Indices: 36336660--36336773 Score: 106
Period size: 28 Copynumber: 4.3 Consensus size: 26
36336650 GGGGGCAAAA
* **
36336660 TGGTAATTTTACCCCACAAAGGTATCT
1 TGGTAATTCTACCCCACAGGGGTAT-T
* * *
36336687 CGGTTAATTCCACCCTACAGGGGTATT
1 TGG-TAATTCTACCCCACAGGGGTATT
*
36336714 TCGCTAATTCTA-CCC-CAGGGGTATT
1 T-GGTAATTCTACCCCACAGGGGTATT
36336739 TGGTAATTCTACCCCTACAGGGGTATTT
1 TGGTAATTCTACCCC-ACAGGGGTA-TT
36336767 TGGTAAT
1 TGGTAAT
36336774 GTTCACAAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
24 9 0.13
25 14 0.20
26 2 0.03
27 18 0.26
28 27 0.39
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (26 bp):
TGGTAATTCTACCCCACAGGGGTATT
Found at i:36336816 original size:27 final size:27
Alignment explanation
Indices: 36336756--36336857 Score: 93
Period size: 28 Copynumber: 3.8 Consensus size: 27
36336746 TCTACCCCTA
* *
36336756 CAGGGGTATTTTGGTAATGTTCACAAAT
1 CAGGGGTATTTTGCTAAT-TTTACAAAT
* *
36336784 TAGGGGTATTTTGCTAATTTTACAAAC
1 CAGGGGTATTTTGCTAATTTTACAAAT
* **
36336811 CAGGGGGTA-TTTGGTAA-TTTATTAAT
1 CA-GGGGTATTTTGCTAATTTTACAAAT
36336837 C-GAGGGTATTTTGCTAATTTT
1 CAG-GGGTATTTTGCTAATTTT
36336858 GTAAACCAAG
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
24 1 0.02
25 5 0.08
26 14 0.23
27 18 0.30
28 22 0.37
ACGTcount: A:0.26, C:0.09, G:0.24, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGCTAATTTTACAAAT
Found at i:36336870 original size:26 final size:26
Alignment explanation
Indices: 36336787--36336914 Score: 82
Period size: 26 Copynumber: 4.9 Consensus size: 26
36336777 CACAAATTAG
**
36336787 GGGTATTTTGCTAATTTTACAAACCA
1 GGGTATTTTGCTAATTTTGTAAACCA
* * *
36336813 GGGGGTA-TTTGGTAATTTAT-TAATCGA
1 --GGGTATTTTGCTAATTT-TGTAAACCA
36336840 GGGTATTTTGCTAATTTTGTAAACCA
1 GGGTATTTTGCTAATTTTGTAAACCA
* ** *
36336866 AGGTATTCAG-TAATTTTGTAAATCGA
1 GGGTATTTTGCTAATTTTGTAAA-CCA
*** *
36336892 GGGTAAAATGATAATTTTGTAAA
1 GGGTATTTTGCTAATTTTGTAAA
36336915 TTGAGGGTAA
Statistics
Matches: 79, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
25 18 0.23
26 29 0.37
27 26 0.33
28 6 0.08
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGCTAATTTTGTAAACCA
Found at i:36336912 original size:27 final size:27
Alignment explanation
Indices: 36336875--36336987 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
36336865 AAGGTATTCA
*
36336875 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCAAGGGTAAAATG
* **
36336902 ATAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCAAGGGTAAAATG
* * *
36336929 GTAATTTCGT-AATCAAAGGTAAAACG
1 GTAATTTTGTAAATCAAGGGTAAAATG
* *
36336955 GTAATTTTATAAATCAAGAGTAAAATG
1 GTAATTTTGTAAATCAAGGGTAAAATG
36336982 GTAATT
1 GTAATT
36336988 CTCTATTCTT
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 20 0.28
27 52 0.72
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTTTGTAAATCAAGGGTAAAATG
Found at i:36336960 original size:53 final size:54
Alignment explanation
Indices: 36336875--36336987 Score: 138
Period size: 53 Copynumber: 2.1 Consensus size: 54
36336865 AAGGTATTCA
* * * * * ** *
36336875 GTAATTTTGTAAATCGAGGGTAAAATGATAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTTCGTAAATCAAAGGTAAAACGATAATTTTATAAATCAAGAGTAAAATG
*
36336929 GTAATTTCGT-AATCAAAGGTAAAACGGTAATTTTATAAATCAAGAGTAAAATG
1 GTAATTTCGTAAATCAAAGGTAAAACGATAATTTTATAAATCAAGAGTAAAATG
36336982 GTAATT
1 GTAATT
36336988 CTCTATTCTT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
53 41 0.82
54 9 0.18
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.34
Consensus pattern (54 bp):
GTAATTTCGTAAATCAAAGGTAAAACGATAATTTTATAAATCAAGAGTAAAATG
Found at i:36353252 original size:12 final size:12
Alignment explanation
Indices: 36353235--36353261 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
36353225 TTAAATCAGT
36353235 TAATTAGTTTAA
1 TAATTAGTTTAA
36353247 TAATTAGTTTAA
1 TAATTAGTTTAA
36353259 TAA
1 TAA
36353262 ACAAACCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (12 bp):
TAATTAGTTTAA
Found at i:36358529 original size:5 final size:5
Alignment explanation
Indices: 36358507--36358592 Score: 81
Period size: 6 Copynumber: 16.8 Consensus size: 5
36358497 CTCCTCCTAT
*
36358507 TTTTA -TTTA TTCTTA TTTTA TTTTA TTTTA -TTTA TTCTA TTTTTA TTTTTA
1 TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA
36358558 TTTTTA TTTTTA TTTTTA TTTTA --TTA TTTTA TTTT
1 -TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTT
36358593 GAAAGATATA
Statistics
Matches: 73, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 29 0.40
6 33 0.45
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:36358539 original size:25 final size:25
Alignment explanation
Indices: 36358507--36358591 Score: 95
Period size: 25 Copynumber: 3.3 Consensus size: 25
36358497 CTCCTCCTAT
36358507 TTTTATTTATTCTTATTTTATTTTA
1 TTTTATTTATTCTTATTTTATTTTA
36358532 TTTTATTTATTC-TATTTTTATTTTTA
1 TTTTATTTATTCTTA-TTTTA-TTTTA
*
36358558 TTTTTATTTTTATTTTTATTTTA--TTA
1 -TTTTA--TTTATTCTTATTTTATTTTA
36358584 TTTTATTT
1 TTTTATTT
36358592 TGAAAGATAT
Statistics
Matches: 53, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
23 3 0.06
24 2 0.04
25 22 0.42
26 8 0.15
27 5 0.09
29 11 0.21
30 2 0.04
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (25 bp):
TTTTATTTATTCTTATTTTATTTTA
Found at i:36363170 original size:14 final size:15
Alignment explanation
Indices: 36363153--36363181 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36363143 TTACGAAAAT
36363153 TTCACACAT-ATAAA
1 TTCACACATAATAAA
36363167 TTCACACATAATAAA
1 TTCACACATAATAAA
36363182 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:36370009 original size:6 final size:6
Alignment explanation
Indices: 36370000--36370077 Score: 113
Period size: 6 Copynumber: 12.8 Consensus size: 6
36369990 TATTAGAACT
36370000 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* *
36370048 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
36370078 GGGAATGCAA
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
5 2 0.03
6 59 0.91
7 3 0.05
8 1 0.02
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:36370584 original size:27 final size:27
Alignment explanation
Indices: 36370479--36370592 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 27
36370469 AGGGGCAAAA
* * ** *
36370479 TGGTAATTTTACCCCACAAAGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
36370506 CGGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
36370533 CGCTAATTCTACCC--CAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
36370558 TGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
36370585 TGGTAATT
1 TGGTAATT
36370593 TCACAAATTA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
25 23 0.31
27 51 0.69
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:36370632 original size:54 final size:53
Alignment explanation
Indices: 36370548--36370701 Score: 157
Period size: 54 Copynumber: 2.9 Consensus size: 53
36370538 ATTCTACCCC
* * **
36370548 AGGGGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTGGTAATTTCACAAATT
1 AGGGGTATTTTGCTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTCACAAA-T
* **
36370602 AGGGGTATTTTGCTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTAAT
1 AGGGGTATTTTGCTAATTTTACAAACCAGGGGTATTTTGGTAATTTCACAAAT
* ** * **
36370655 CGAGGGTATTTTGCTAATTTTGTAAACCAAGGGTATTTCAGTAATTT
1 AG-GGGTATTTTGCTAATTTTACAAACCAGGGGTATTTTGGTAATTT
36370702 TGTAAATCGA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.05
54 81 0.95
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.41
Consensus pattern (53 bp):
AGGGGTATTTTGCTAATTTTACAAACCAGGGGTATTTTGGTAATTTCACAAAT
Found at i:36370648 original size:27 final size:27
Alignment explanation
Indices: 36370546--36370702 Score: 138
Period size: 27 Copynumber: 5.8 Consensus size: 27
36370536 TAATTCTACC
* **
36370546 CCAGGGGTATTTTGGTAATTCTACCCTA
1 CCAGGGGTATTTTGGTAATTTTA-CAAA
*
36370574 -CAGGGGTATTTTGGTAATTTCACAAA
1 CCAGGGGTATTTTGGTAATTTTACAAA
** *
36370600 TTAGGGGTATTTTGCTAATTTTACAAA
1 CCAGGGGTATTTTGGTAATTTTACAAA
**
36370627 CCAGGGGTATTTTGGTAATTTTATTAA
1 CCAGGGGTATTTTGGTAATTTTACAAA
* * **
36370654 TC-GAGGGTATTTTGCTAATTTTGTAAA
1 CCAG-GGGTATTTTGGTAATTTTACAAA
* **
36370681 CCAAGGGTATTTCAGTAATTTT
1 CCAGGGGTATTTTGGTAATTTT
36370703 GTAAATCGAG
Statistics
Matches: 105, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.03
27 102 0.97
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (27 bp):
CCAGGGGTATTTTGGTAATTTTACAAA
Found at i:36370702 original size:54 final size:54
Alignment explanation
Indices: 36370604--36370734 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
36370594 CACAAATTAG
** * ** *
36370604 GGGTATTTTGCTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTAATCGA
1 GGGTATTTTGCTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
*
36370658 GGGTATTTTGCTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGCTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
*** *
36370712 GGGTAAAATGATAATTTTGTAAA
1 GGGTATTTTGCTAATTTTGTAAA
36370735 TTGAGGGTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGCTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
Found at i:36370703 original size:27 final size:26
Alignment explanation
Indices: 36370604--36370716 Score: 82
Period size: 27 Copynumber: 4.2 Consensus size: 26
36370594 CACAAATTAG
* * *
36370604 GGGTATTTTGCTAATTTTACAAACCAG
1 GGGTATTTAG-TAATTTTATAAACCAA
* * * *
36370631 GGGTATTTTGGTAATTTTATTAATCGA
1 GGGTA-TTTAGTAATTTTATAAACCAA
* *
36370658 GGGTATTTTGCTAATTTTGTAAACCAA
1 GGGTATTTAG-TAATTTTATAAACCAA
* * *
36370685 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTATAAACCAA
36370712 GGGTA
1 GGGTA
36370717 AAATGATAAT
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
26 4 0.06
27 60 0.87
28 5 0.07
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTATAAACCAA
Found at i:36370726 original size:27 final size:27
Alignment explanation
Indices: 36370669--36370808 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 27
36370659 GGTATTTTGC
* ** *
36370669 TAATTTTGTAAACCAAGGGT-ATTTCAG
1 TAATTTTGTAAATCAAGGGTAAAAT-GG
* *
36370696 TAATTTTGTAAATCGAGGGTAAAATGA
1 TAATTTTGTAAATCAAGGGTAAAATGG
**
36370723 TAATTTTGTAAATTGAGGGTAAAATGG
1 TAATTTTGTAAATCAAGGGTAAAATGG
* * *
36370750 TAATTTCGTAAATCAAAGGTAAAACGG
1 TAATTTTGTAAATCAAGGGTAAAATGG
* *
36370777 TAATTTTATAAATCAAGAGTAAAATGG
1 TAATTTTGTAAATCAAGGGTAAAATGG
36370804 TAATT
1 TAATT
36370809 CTATCTTATT
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 92 0.98
28 2 0.02
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.34
Consensus pattern (27 bp):
TAATTTTGTAAATCAAGGGTAAAATGG
Found at i:36370845 original size:27 final size:27
Alignment explanation
Indices: 36370815--36370909 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 27
36370805 AATTCTATCT
*
36370815 TATTTTGGTAATTTTACAAATCGAGGA
1 TATTTTGGTAATTTTACAAATCGAGGG
* * *
36370842 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTTGGTAATTTTACAAATCGAGGG
* *
36370869 TACTTTGGTAATTTTACAAGTCGAGGG
1 TATTTTGGTAATTTTACAAATCGAGGG
**
36370896 TATTTCAGTAATTT
1 TATTTTGGTAATTT
36370910 GGTAAACTAA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAATCGAGGG
Found at i:36386100 original size:29 final size:29
Alignment explanation
Indices: 36386037--36386104 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
36386027 TAATCACCCA
* *
36386037 CGCACACTCAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTACCATGCACTTTAAACT
* **
36386066 CACACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTACCATGCACTTT-AAACT
36386095 CGCACACTTA
1 CGCACACTTA
36386105 CCTTTTTCCG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTACCATGCACTTTAAACT
Found at i:36386249 original size:29 final size:30
Alignment explanation
Indices: 36386215--36386285 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 30
36386205 TCAACCGCGC
*
36386215 ACACTTAGTGCCATGTAC-TGTAAACTCGA
1 ACACTTAGTGCCATGTACATGTAAACCCGA
* *
36386244 ACACTTAGTG-C-TGTACAATTTAAACCCGC
1 ACACTTAGTGCCATGTAC-ATGTAAACCCGA
36386273 ACACTTAGTGCCA
1 ACACTTAGTGCCA
36386286 ATCTCATGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 28 0.80
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (30 bp):
ACACTTAGTGCCATGTACATGTAAACCCGA
Found at i:36394133 original size:29 final size:29
Alignment explanation
Indices: 36394070--36394137 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
36394060 TAATCACCCA
* *
36394070 CGCACACTCAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTACCATGCACTTTAAACT
* **
36394099 CACACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTACCATGCACTTT-AAACT
36394128 CGCACACTTA
1 CGCACACTTA
36394138 CCTTTTTCCG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTACCATGCACTTTAAACT
Found at i:36394279 original size:29 final size:30
Alignment explanation
Indices: 36394240--36394318 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
36394230 CTTAATAATC
36394240 AACCGCGCACACTTAGTGCCATGTAC-TGTA
1 AACC-CGCACACTTAGTGCCATGTACATGTA
* *
36394270 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATGTA
36394299 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36394319 ATCTCATGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 32 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATGTA
Found at i:36397316 original size:45 final size:45
Alignment explanation
Indices: 36397220--36397482 Score: 332
Period size: 45 Copynumber: 5.8 Consensus size: 45
36397210 TCATTTTTCG
* ** * * ** * *
36397220 TCGTGTTGCCATAGTGTCTTTCAGCCATGGTCTTATTCTTTTGAT
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
* *
36397265 TGGTGATTCCA-AAGCGTCTTTCAG-CTATGGTCTTACTCAATAGAA
1 TCGTGATGCCATAA-CGTCTTTCAGTC-ATGGTCTTACTCAATAGAA
* *
36397310 TCGTGATGCCATAACGTCTTTTAGTTATGGTCTTACTCAATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
* *
36397355 TTGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTTAATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
* **
36397400 TCGTGATGCCATAACATCTTTCAGTCATGGTCTTACTTGATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
36397445 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTC
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTC
36397483 GTTTCTGGTA
Statistics
Matches: 191, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
44 2 0.01
45 187 0.98
46 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (45 bp):
TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
Found at i:36399280 original size:24 final size:24
Alignment explanation
Indices: 36399252--36399300 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
36399242 TCAAACAATA
36399252 TCATTTAAATATAAATGTAATAGT
1 TCATTTAAATATAAATGTAATAGT
36399276 TCATTTAAATATAAATGTAATAGT
1 TCATTTAAATATAAATGTAATAGT
36399300 T
1 T
36399301 GTAACTATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (24 bp):
TCATTTAAATATAAATGTAATAGT
Done.