Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 109 of 344
Found at i:36730419 original size:46 final size:47
Alignment explanation
Indices: 36730250--36730416 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 47
36730240 AACCCGCCCC
* * * *
36730250 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCAGACATTTGCATCCA
* * * * * *
36730296 TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTT-CA-GAC-ATTTGCATCCA
* *
36730344 TCA-CGAACTCGGACTCAACTCAACGAG-TTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCAGACATTTGCATCCA
36730389 TAAGTGAACTCGGACTCAACTCAACGAG
1 TAAGTGAACTCGGACTCAACTCAACGAG
36730417 TTCGGATGCT
Statistics
Matches: 98, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 54 0.55
47 23 0.23
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTTCAGACATTTGCATCCA
Found at i:36730441 original size:46 final size:46
Alignment explanation
Indices: 36730249--36730434 Score: 127
Period size: 46 Copynumber: 4.0 Consensus size: 46
36730239 TAACCCGCCC
* * * * *
36730249 CTAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAG-TTCGG-ATGCTCAACCAT
* *
36730296 -TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTA-CAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * * *
36730343 CTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACAT-TTGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCT-CAACCAT
36730389 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
36730434 C
1 C
36730435 CTAGTGACAT
Statistics
Matches: 108, Mismatches: 16, Indels: 31
0.70 0.10 0.20
Matches are distributed among these distances:
43 1 0.01
44 10 0.09
45 8 0.07
46 55 0.51
47 27 0.25
48 3 0.03
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:36730880 original size:30 final size:30
Alignment explanation
Indices: 36730846--36730905 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
36730836 ATTTAATACG
36730846 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
36730876 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
36730906 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:36737599 original size:19 final size:20
Alignment explanation
Indices: 36737575--36737612 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36737565 GGTACCACCA
36737575 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
36737594 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
36737613 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:36738460 original size:28 final size:29
Alignment explanation
Indices: 36738429--36738485 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
36738419 ATTTAATATG
36738429 AACTTTAAAAAATTACAC-TTTGCCCCTA
1 AACTTTAAAAAATTACACTTTTGCCCCTA
** *
36738457 AACTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAATTACACTTTTGCCCCTA
36738486 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.35
Consensus pattern (29 bp):
AACTTTAAAAAATTACACTTTTGCCCCTA
Found at i:36741913 original size:70 final size:70
Alignment explanation
Indices: 36741838--36742126 Score: 328
Period size: 70 Copynumber: 4.1 Consensus size: 70
36741828 CAGTTATTTC
* * * * * * *
36741838 ACTAGCGATGGGCCCAATTATTTGTTGATTTATTCAACTAGTGCAAGTCACAA-TAATTGTCGGC
1 ACTAGCGCTGGGCACAATTATTTGTCGATTTATTCGACTAGTGCAGGGCACAACT-ATTGTCGGT
36741902 TATCCG
65 TATCCG
* * ** * * ** * * *
36741908 ACTAGCTCTAGGTGCAATTATTTGTTGATTTATTTGACTAAAGCAGGTCACAATTATTGTCAGTT
1 ACTAGCGCTGGGCACAATTATTTGTCGATTTATTCGACTAGTGCAGGGCACAACTATTGTCGGTT
*
36741973 ATCTG
66 ATCCG
* * *
36741978 ACTAGAGCTGGGCACAATTATTTGTCGATTTATTCGACTAGTGTAGGGCACAACTATTGTCGATT
1 ACTAGCGCTGGGCACAATTATTTGTCGATTTATTCGACTAGTGCAGGGCACAACTATTGTCGGTT
36742043 ATCCG
66 ATCCG
* * * *
36742048 ACTAGCGCTGGGTACAATTATTTATCAATTTATTTGACTAGTGCAGGGCACAACTATTGTCGGTT
1 ACTAGCGCTGGGCACAATTATTTGTCGATTTATTCGACTAGTGCAGGGCACAACTATTGTCGGTT
36742113 ATCCG
66 ATCCG
36742118 ACTAGCGCT
1 ACTAGCGCT
36742127 AGGCGTAAAA
Statistics
Matches: 183, Mismatches: 35, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
70 182 0.99
71 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (70 bp):
ACTAGCGCTGGGCACAATTATTTGTCGATTTATTCGACTAGTGCAGGGCACAACTATTGTCGGTT
ATCCG
Found at i:36741962 original size:36 final size:36
Alignment explanation
Indices: 36741922--36742105 Score: 115
Period size: 36 Copynumber: 5.2 Consensus size: 36
36741912 GCTCTAGGTG
*
36741922 CAATTATTTGTTGATTTATTTGACTAAAGCAGGTCA
1 CAATTATTTGTTGATTTATTTGACTAAAGCAGGGCA
* * * * *
36741958 CAATTA-TTG-TCAGTTATCTGACTAGAGCTGGGCA
1 CAATTATTTGTTGATTTATTTGACTAAAGCAGGGCA
* * ** *
36741992 CAATTATTTGTCGATTTATTCGACTAGTGTAGGGCA
1 CAATTATTTGTTGATTTATTTGACTAAAGCAGGGCA
* * ** ** * *
36742028 CAACTA-TTGTCGA-TTATCCGACTAGCGCTGGGTA
1 CAATTATTTGTTGATTTATTTGACTAAAGCAGGGCA
* ** **
36742062 CAATTATTTATCAATTTATTTGACTAGTGCAGGGCA
1 CAATTATTTGTTGATTTATTTGACTAAAGCAGGGCA
*
36742098 CAACTATT
1 CAATTATT
36742106 GTCGGTTATC
Statistics
Matches: 115, Mismatches: 29, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
34 46 0.40
35 18 0.16
36 51 0.44
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (36 bp):
CAATTATTTGTTGATTTATTTGACTAAAGCAGGGCA
Found at i:36741994 original size:34 final size:34
Alignment explanation
Indices: 36741937--36742122 Score: 126
Period size: 34 Copynumber: 5.4 Consensus size: 34
36741927 ATTTGTTGAT
* * * *
36741937 TTATTTGACTAAAGCAGGTCACAATTATTGTCAG
1 TTATCTGACTAGAGCTGGGCACAATTATTGTCAG
*
36741971 TTATCTGACTAGAGCTGGGCACAATTATTTGTCGAT
1 TTATCTGACTAGAGCTGGGCACAATTA-TTGTC-AG
* *
36742007 TTAT-TCGACTAGTG-TAGGGCACAACTATTGTC-G
1 TTATCT-GACTAGAGCT-GGGCACAATTATTGTCAG
* * * * *
36742040 ATTATCCGACTAGCGCTGGGTACAATTATTTATCAAT
1 -TTATCTGACTAGAGCTGGGCACAATTA-TTGTC-AG
* * * * *
36742077 TTATTTGACTAGTGCAGGGCACAACTATTGTCGG
1 TTATCTGACTAGAGCTGGGCACAATTATTGTCAG
*
36742111 TTATCCGACTAG
1 TTATCTGACTAG
36742123 CGCTAGGCGT
Statistics
Matches: 117, Mismatches: 25, Indels: 20
0.72 0.15 0.12
Matches are distributed among these distances:
34 53 0.45
35 21 0.18
36 43 0.37
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (34 bp):
TTATCTGACTAGAGCTGGGCACAATTATTGTCAG
Found at i:36742079 original size:140 final size:140
Alignment explanation
Indices: 36741822--36742122 Score: 370
Period size: 140 Copynumber: 2.1 Consensus size: 140
36741812 GTGTAATTGG
* * * * * *
36741822 TATTGTCAGTTATTTCACTAGCGATGGGCCCAATTATTTGTTGATTTATTCAACTAGTGCAAGTC
1 TATTGTCAGTTATCTGACTAGAGATGGGCACAATTATTTGTCGATTTATTCAACTAGTGCAAGGC
* * * * **
36741887 ACAATAATTGTCGGCTATCCGACTAGCTCTAGGTGCAATTATTTGTTGATTTATTTGACTAAAGC
66 ACAATAATTGTCGACTATCCGACTAGCGCTAGGTACAATTATTTATCAATTTATTTGACTAAAGC
* *
36741952 AGGTCACAAT
131 AGGGCACAAC
* * * *
36741962 TATTGTCAGTTATCTGACTAGAGCTGGGCACAATTATTTGTCGATTTATTCGACTAGTGTAGGGC
1 TATTGTCAGTTATCTGACTAGAGATGGGCACAATTATTTGTCGATTTATTCAACTAGTGCAAGGC
* * **
36742027 ACAACT-ATTGTCGATTATCCGACTAGCGCTGGGTACAATTATTTATCAATTTATTTGACTAGTG
66 ACAA-TAATTGTCGACTATCCGACTAGCGCTAGGTACAATTATTTATCAATTTATTTGACTAAAG
36742091 CAGGGCACAAC
130 CAGGGCACAAC
* *
36742102 TATTGTCGGTTATCCGACTAG
1 TATTGTCAGTTATCTGACTAG
36742123 CGCTAGGCGT
Statistics
Matches: 136, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
140 135 0.99
141 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (140 bp):
TATTGTCAGTTATCTGACTAGAGATGGGCACAATTATTTGTCGATTTATTCAACTAGTGCAAGGC
ACAATAATTGTCGACTATCCGACTAGCGCTAGGTACAATTATTTATCAATTTATTTGACTAAAGC
AGGGCACAAC
Found at i:36743964 original size:32 final size:33
Alignment explanation
Indices: 36743928--36744001 Score: 91
Period size: 32 Copynumber: 2.3 Consensus size: 33
36743918 CAAGTTGCCA
*
36743928 AATAAGACCATAGCCG-GCTATGGCAAT-TGAAT
1 AATAAGACCATAACCGAGCTATGGC-ATGTGAAT
*
36743960 AATAAGACCATAACCGAGTTATGGCATGTGAAT
1 AATAAGACCATAACCGAGCTATGGCATGTGAAT
*
36743993 GA-AAGACCA
1 AATAAGACCA
36744002 CGACAGGGCC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 24 0.65
33 13 0.35
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.20
Consensus pattern (33 bp):
AATAAGACCATAACCGAGCTATGGCATGTGAAT
Found at i:36759861 original size:43 final size:42
Alignment explanation
Indices: 36759749--36759898 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 42
36759739 CAATGCTAAC
* * *
36759749 GTCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATAT-GATG-CTAT
* * * *
36759792 GTCCCCGACAAGGTCATATACG-AAATCAAATATGATGCTGAT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCT-AT
* *
36759834 GTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAAA--TCAAATATGATG-CTAT
**
36759878 GTCCCAGATGTGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
36759899 AAAATCACAT
Statistics
Matches: 86, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 23 0.27
43 29 0.34
44 25 0.29
45 7 0.08
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCTAT
Found at i:36759880 original size:44 final size:44
Alignment explanation
Indices: 36759749--36759898 Score: 121
Period size: 42 Copynumber: 3.5 Consensus size: 44
36759739 CAATGCTAAC
* * * **
36759749 GTCCCAGACGTGGTCTTACATGT-AATC-AAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAT
* * * * * **
36759792 GTCCCCGACAAGGTCATATACG-AAA--TCAAATATGATGCTGAT
1 GTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAAT
36759834 GTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGCCAAT
**
36759878 GTCCCAGATGTGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
36759899 AAAATCACAT
Statistics
Matches: 81, Mismatches: 20, Indels: 11
0.72 0.18 0.10
Matches are distributed among these distances:
41 2 0.02
42 26 0.32
43 21 0.26
44 26 0.32
45 6 0.07
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGCCAAT
Found at i:36768112 original size:47 final size:47
Alignment explanation
Indices: 36768041--36768400 Score: 585
Period size: 47 Copynumber: 7.6 Consensus size: 47
36768031 CCCTTCGGGA
* * * *
36768041 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
36768088 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36768135 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36768182 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36768229 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36768278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36768325 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36768374 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36768401 TATTCAAATA
Statistics
Matches: 295, Mismatches: 14, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 205 0.69
49 90 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:36768119 original size:25 final size:25
Alignment explanation
Indices: 36768091--36768169 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
36768081 ACTCGGCCCT
36768091 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
36768116 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
36768138 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
36768163 ATCACAT
1 ATCACAT
36768170 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:36768271 original size:96 final size:96
Alignment explanation
Indices: 36768041--36768400 Score: 620
Period size: 96 Copynumber: 3.8 Consensus size: 96
36768031 CCCTTCGGGA
* * * *
36768041 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
36768104 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
36768135 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36768198 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36768229 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36768294 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36768325 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36768390 ACTTTCACATT
66 ACTTTCACATT
36768401 TATTCAAATA
Statistics
Matches: 252, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
93 1 0.00
94 91 0.36
96 160 0.63
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36768297 original size:143 final size:141
Alignment explanation
Indices: 36768041--36768400 Score: 621
Period size: 143 Copynumber: 2.5 Consensus size: 141
36768031 CCCTTCGGGA
* * * * *
36768041 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
36768106 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
36768171 GGCCATTAGGC
131 GGCCATTAGGC
* *
36768182 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
36768247 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
36768312 TCGGCCATTAGGC
129 TCGGCCATTAGGC
36768325 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36768390 ACTTTCACATT
64 ACTTTCACATT
36768401 TATTCAAATA
Statistics
Matches: 206, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
141 48 0.23
143 113 0.55
145 45 0.22
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:36770589 original size:12 final size:12
Alignment explanation
Indices: 36770572--36770597 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36770562 CATTCCGAAG
36770572 TATATATATACA
1 TATATATATACA
36770584 TATATATATACA
1 TATATATATACA
36770596 TA
1 TA
36770598 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:36771128 original size:27 final size:28
Alignment explanation
Indices: 36771044--36771141 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
36771034 CATGAGATTG
* * * *
36771044 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
36771073 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
36771101 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36771128 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
36771142 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36771152 original size:27 final size:27
Alignment explanation
Indices: 36771072--36771154 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
36771062 TAAATTGTAC
* *
36771072 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
36771100 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
36771127 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
36771154 A
1 A
36771155 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:36774580 original size:43 final size:42
Alignment explanation
Indices: 36774508--36774676 Score: 135
Period size: 43 Copynumber: 4.0 Consensus size: 42
36774498 AGGAAGATTG
* * ** *
36774508 TACAATGCTAATGTCCCAAACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACAAGGTCTTACATGAAATCAAA
* ** * *
36774550 TATCGATGCCTCTGTCCCCGACAAGGTCTTATATGAAATCAAA
1 TA-CAATGCCAATGTCCCAGACAAGGTCTTACATGAAATCAAA
*
36774593 TACAATGCCAATGTCCCAGACATGGTCTTACACAT-AAATCTCAAA
1 TACAATGCCAATGTCCCAGACAAGGTCTT--ACATGAAA--TCAAA
* * ***
36774638 T-CGATGCCAATGTCCCATATGTGGTCTTACATGAAATCA
1 TACAATGCCAATGTCCCAGACAAGGTCTTACATGAAATCA
36774677 CATATCGAAA
Statistics
Matches: 101, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
41 3 0.03
42 28 0.28
43 38 0.38
44 26 0.26
45 6 0.06
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACAAGGTCTTACATGAAATCAAA
Found at i:36785017 original size:13 final size:13
Alignment explanation
Indices: 36784999--36785024 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36784989 CATTTTACGC
36784999 GATTAAATCCTTT
1 GATTAAATCCTTT
36785012 GATTAAATCCTTT
1 GATTAAATCCTTT
36785025 TATCAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
GATTAAATCCTTT
Found at i:36786716 original size:40 final size:40
Alignment explanation
Indices: 36786576--36786764 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
36786566 CGATATCTCT
* * *
36786576 CACACTAAGTGCCAATACATAGCCGAAGCTATT-ATAATTTCG
1 CACACTAAGTGCC-ATATATAGCCGAAGCTATTCAGAA--TCA
* * * **
36786618 CACACTAAGTGCCTTACATAGCCGAAACTATCTCAGTCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTAT-TCAGAATCA
* *
36786659 CACACTAAGTGCTATATATAGCCGAAGCTATTCCGAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATTCAGAATCA
* * *
36786699 CACACTAAGTGCCATATATAGTCGAAGCTA-TCTTGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATTC-AGAATCA
*
36786739 CACACTAAGTGCCATATATATCCGAA
1 CACACTAAGTGCCATATATAGCCGAA
36786765 TCATCGTCAA
Statistics
Matches: 125, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 63 0.50
41 45 0.36
42 14 0.11
43 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATTCAGAATCA
Found at i:36788967 original size:27 final size:27
Alignment explanation
Indices: 36788936--36789225 Score: 323
Period size: 27 Copynumber: 10.7 Consensus size: 27
36788926 TTATTTTACC
*
36788936 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
36788963 AAATTACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36788990 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
36789017 AAATCACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
36789044 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
36789071 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36789098 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
36789125 AAATTACCACAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
36789152 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
36789179 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
36789206 AAATTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
36789226 ATTTACAGAA
Statistics
Matches: 231, Mismatches: 30, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 4 0.02
27 223 0.97
28 4 0.02
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:36789275 original size:27 final size:27
Alignment explanation
Indices: 36789152--36789277 Score: 87
Period size: 27 Copynumber: 4.7 Consensus size: 27
36789142 CTAATTTGTG
* **
36789152 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACTTACA
* **
36789179 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACTTACA
* *
36789206 AAATTAC-CAAAGTACCC-CTGATTTACA
1 AAATTACTGAAA-TACCCTC-GACTTACA
* * ** *
36789233 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGACTTACA
36789260 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
36789278 TGTAGGGTAG
Statistics
Matches: 80, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.05
27 74 0.93
28 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACTTACA
Found at i:36789298 original size:27 final size:27
Alignment explanation
Indices: 36789268--36789506 Score: 252
Period size: 27 Copynumber: 8.9 Consensus size: 27
36789258 CAAAATTACT
36789268 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
36789295 GAAATACCCTTGTCA-GGTAGAAATACC
1 GAAATACCCTTGT-AGGGTAGAAATACC
** *
36789322 GAAATACTGTTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
36789349 GAAATACCCCTGTAGGGTA-AAATTACT
1 GAAATACCCTTGTAGGGTAGAAA-TACC
* * * **
36789376 AAAATACCCCTATAGGGTAGACTTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
36789403 AAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
36789430 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
36789457 GAAATACTCC-TGTAAGGTAGAATTACC
1 GAAATAC-CCTTGTAGGGTAGAAATACC
* *
36789484 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCTTGTAGGGTAGAAAT
36789507 TACCATTTTA
Statistics
Matches: 177, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.05
27 164 0.93
28 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACC
Found at i:36789355 original size:81 final size:79
Alignment explanation
Indices: 36789268--36789506 Score: 293
Period size: 81 Copynumber: 3.0 Consensus size: 79
36789258 CAAAATTACT
* * * **
36789268 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTCAGGTAGAAATACCGAAATACTGTT
1 GAAATACCCCTGTAGGGTAGAAATACTGAAATACCC-TGT-AGGTAGAATTACCGAAATACCCTT
36789333 GTAGGGTAGAAATATC
64 GTAGGGTAGAAATATC
* * * *
36789349 GAAATACCCCTGTAGGGTA-AAATTACTAAAATACCCCTATAGGGTAGACTTACCAAAATACCCT
1 GAAATACCCCTGTAGGGTAGAAA-TACTGAAATA-CCCTGTA-GGTAGAATTACCGAAATACCCT
36789413 TGTAGGGTAGAAATATC
63 TGTAGGGTAGAAATATC
* *
36789430 GAAATACCCCTGTAGGGTAGAATTACTGAAATACTCCTGTAAGGTAGAATTACCGAGATACCCTT
1 GAAATACCCCTGTAGGGTAGAAATACTGAAATAC-CCTGT-AGGTAGAATTACCGAAATACCCTT
*
36789495 GTGGGGTA-AAAT
64 GTAGGGTAGAAAT
36789507 TACCATTTTA
Statistics
Matches: 136, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
80 9 0.07
81 121 0.89
82 6 0.04
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (79 bp):
GAAATACCCCTGTAGGGTAGAAATACTGAAATACCCTGTAGGTAGAATTACCGAAATACCCTTGT
AGGGTAGAAATATC
Found at i:36790060 original size:6 final size:6
Alignment explanation
Indices: 36790029--36790095 Score: 57
Period size: 6 Copynumber: 10.8 Consensus size: 6
36790019 TTGCATTCAC
* *
36790029 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
36790078 -TCACCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCT
36790096 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
5 3 0.06
6 38 0.78
7 6 0.12
8 2 0.04
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:36790064 original size:31 final size:31
Alignment explanation
Indices: 36790029--36790104 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
36790019 TTGCATTCAC
*
36790029 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
* *
36790060 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
36790091 ATTCT-AGTTTTGAT
1 ATTCTGA-TTTTGAT
36790105 AATGTTTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 1 0.03
31 39 0.98
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTG
Found at i:36794054 original size:40 final size:40
Alignment explanation
Indices: 36793960--36794104 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
36793950 TACTCGAATG
*
36793960 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
36794001 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
36794041 ATATTCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
36794081 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
36794105 CTTGTGTGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:36802046 original size:40 final size:40
Alignment explanation
Indices: 36801952--36802095 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
36801942 TACTCGAATG
*
36801952 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
36801993 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
36802033 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
36802073 ATATCCGGGTTAAG-ACCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
36802096 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 9 0.10
40 53 0.58
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:36813655 original size:40 final size:40
Alignment explanation
Indices: 36813600--36813866 Score: 489
Period size: 40 Copynumber: 6.7 Consensus size: 40
36813590 AGCATTGGAT
36813600 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
36813640 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
36813680 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
36813720 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
36813760 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
36813800 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
36813840 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
36813867 ATGTGGTTGC
Statistics
Matches: 219, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:36823776 original size:49 final size:49
Alignment explanation
Indices: 36823712--36823885 Score: 213
Period size: 49 Copynumber: 3.5 Consensus size: 49
36823702 ATGGTACGCA
* * * *
36823712 TAGTAGCCTACACTTAGTACTACACATACGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGATACATG
* * * ** *
36823761 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATAATCCGATACATG
* * **
36823811 TAGCAGCCTGTACTTAGTACTACACATGCGACCAATAATCCGATACACA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGATACATG
36823860 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
36823886 CATGACCTCA
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 63 0.60
50 42 0.40
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGATACATG
Found at i:36826851 original size:13 final size:13
Alignment explanation
Indices: 36826833--36826862 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
36826823 GACATGGCCA
*
36826833 TGTGTCTCAGCCG
1 TGTGTCTCAACCG
36826846 TGTGTCTCAACCG
1 TGTGTCTCAACCG
36826859 TGTG
1 TGTG
36826863 AACGACACGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.27, G:0.30, T:0.33
Consensus pattern (13 bp):
TGTGTCTCAACCG
Found at i:36829688 original size:26 final size:27
Alignment explanation
Indices: 36829608--36829690 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
36829598 AGCTGAGTAG
* *
36829608 ATTATCGAAATACCCCCAATTTGTAAA
1 ATTATCAAAATACCCCCGATTTGTAAA
36829635 ATTATCAAAATACCCCCGATTTGTAAA
1 ATTATCAAAATACCCCCGATTTGTAAA
*
36829662 ATTA-CTAAAATACCCCTGATTTG-AAA
1 ATTATC-AAAATACCCCCGATTTGTAAA
36829688 ATT
1 ATT
36829691 TTACCGAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 7 0.13
27 45 0.87
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
ATTATCAAAATACCCCCGATTTGTAAA
Found at i:36829703 original size:28 final size:27
Alignment explanation
Indices: 36829615--36829707 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
36829605 TAGATTATCG
** *
36829615 AAATACCCCCAATTTGTAAAATTATCA
1 AAATACCCCTGATTTGTAAAATTACCA
* *
36829642 AAATACCCCCGATTTGTAAAATTACTA
1 AAATACCCCTGATTTGTAAAATTACCA
*
36829669 AAATACCCCTGATTTG-AAAATTTTACCG
1 AAATACCCCTGATTTGTAAAA--TTACCA
36829697 AAATACCCCTG
1 AAATACCCCTG
36829708 TAAGGTAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
26 4 0.07
27 39 0.67
28 15 0.26
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATACCCCTGATTTGTAAAATTACCA
Found at i:36830208 original size:27 final size:26
Alignment explanation
Indices: 36830117--36830209 Score: 71
Period size: 27 Copynumber: 3.5 Consensus size: 26
36830107 TATGTTGATT
* * *
36830117 ATGGCTTTGTGCAAATCGTATTTACC
1 ATGGCTATGTGCAGATCATATTTACC
* **
36830143 AGTGGCTATGTGCATATCATATTTATTG
1 A-TGGCTATGTGCAGATCATATTTA-CC
* *
36830171 ATGACTCTGTGTC-GATCATATTTACCC
1 ATGGCTATGTG-CAGATCATATTTA-CC
36830198 ATGGCTATGTGC
1 ATGGCTATGTGC
36830210 CAAATATATT
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
26 2 0.04
27 47 0.92
28 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (26 bp):
ATGGCTATGTGCAGATCATATTTACC
Found at i:36830240 original size:32 final size:32
Alignment explanation
Indices: 36830198--36830287 Score: 101
Period size: 32 Copynumber: 2.8 Consensus size: 32
36830188 ATATTTACCC
36830198 ATGGCTATGTGCCAAATATATTACCGTCACTG
1 ATGGCTATGTGCCAAATATATTACCGTCACTG
* * * *
36830230 ATGGCAATGTGCCGAACT-TATTACAGTTACTG
1 ATGGCTATGTGCC-AAATATATTACCGTCACTG
* * *
36830262 ATGGCTTTGTGCCAATTATAATACCG
1 ATGGCTATGTGCCAAATATATTACCG
36830288 CTACTGAAGG
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
31 3 0.06
32 41 0.87
33 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (32 bp):
ATGGCTATGTGCCAAATATATTACCGTCACTG
Found at i:36830293 original size:32 final size:30
Alignment explanation
Indices: 36830198--36830299 Score: 89
Period size: 32 Copynumber: 3.2 Consensus size: 30
36830188 ATATTTACCC
*
36830198 ATGGCTATGTGCCAAATATATTACCGTCACTG
1 ATGGCTATGTGCCAATTATA-TACCGT-ACTG
* *
36830230 ATGGCAATGTGCCGAACTTAT-TACAGTTACTG
1 ATGGCTATGTGCC-AA-TTATATACCG-TACTG
*
36830262 ATGGCTTTGTGCCAATTATAATACCGCTACTG
1 ATGGCTATGTGCCAATTAT-ATACCG-TACTG
*
36830294 AAGGCT
1 ATGGCT
36830300 TAAAGCCGTA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
30 4 0.07
31 2 0.04
32 45 0.79
33 3 0.05
34 3 0.05
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (30 bp):
ATGGCTATGTGCCAATTATATACCGTACTG
Found at i:36831267 original size:94 final size:94
Alignment explanation
Indices: 36831106--36831294 Score: 315
Period size: 94 Copynumber: 2.0 Consensus size: 94
36831096 GGGTGTTACA
* * * *
36831106 AACCGACTAATCCAAGAACACTATAGATCTCACTAAGATTCTTGGGCTGCTTCTAATCCAAAATG
1 AACCGACTAATCCAAGAACACTATAGATCTCACTAAAATTCTTCGGCTGCTCCCAATCCAAAATG
36831171 GCCTCAATCTTCTTCGGATCAACATGGAT
66 GCCTCAATCTTCTTCGGATCAACATGGAT
* * *
36831200 AACCGACTAATCCAAGAACACTATAGATCTCATTAAAATTCTTCGGTTGCTCCCAATCCACAATG
1 AACCGACTAATCCAAGAACACTATAGATCTCACTAAAATTCTTCGGCTGCTCCCAATCCAAAATG
36831265 GCCTCAATCTTCTTCGGATCAACATGGAT
66 GCCTCAATCTTCTTCGGATCAACATGGAT
36831294 A
1 A
36831295 CCTCCAAAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (94 bp):
AACCGACTAATCCAAGAACACTATAGATCTCACTAAAATTCTTCGGCTGCTCCCAATCCAAAATG
GCCTCAATCTTCTTCGGATCAACATGGAT
Found at i:36834143 original size:24 final size:24
Alignment explanation
Indices: 36834107--36834152 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
36834097 CCTTTCTAAG
36834107 TTAGTACTATTACTATTAAACTAT
1 TTAGTACTATTACTATTAAACTAT
*
36834131 TTAGTACTGTTACTATTAAACT
1 TTAGTACTATTACTATTAAACT
36834153 GTAGATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.46
Consensus pattern (24 bp):
TTAGTACTATTACTATTAAACTAT
Found at i:36836422 original size:23 final size:22
Alignment explanation
Indices: 36836392--36836434 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
36836382 ACCTACACAA
36836392 CATAACATA-ACACCAAATTAAG
1 CATAACATACA-ACCAAATTAAG
36836414 CATATACATACAACCAAATTA
1 CATA-ACATACAACCAAATTA
36836435 GCCACAACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 14 0.74
24 1 0.05
ACGTcount: A:0.53, C:0.23, G:0.02, T:0.21
Consensus pattern (22 bp):
CATAACATACAACCAAATTAAG
Found at i:36837571 original size:12 final size:12
Alignment explanation
Indices: 36837554--36837578 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36837544 GCCATTCCAT
36837554 ACATAGAATTCA
1 ACATAGAATTCA
36837566 ACATAGAATTCA
1 ACATAGAATTCA
36837578 A
1 A
36837579 ATACCTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (12 bp):
ACATAGAATTCA
Found at i:36840106 original size:43 final size:42
Alignment explanation
Indices: 36840074--36840154 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
36840064 TTACATATGA
* *
36840074 TCTCATATCGATGCCAATAGCGC-AGCTATGGTCTGACACAAAG
1 TCTCATATCGATGCC-ATAGC-CTAGATATGGTCTTACACAAAG
*
36840117 TCTCATATCGATGCCATATCCTAGATATGGTCTTACAC
1 TCTCATATCGATGCCATAGCCTAGATATGGTCTTACAC
36840155 GTAAATGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 1 0.03
42 18 0.53
43 15 0.44
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
TCTCATATCGATGCCATAGCCTAGATATGGTCTTACACAAAG
Found at i:36846144 original size:22 final size:25
Alignment explanation
Indices: 36846102--36846159 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 25
36846092 AAGCCACCCA
*
36846102 TTCAGCTCAA-AAGATCTTTCT-G-
1 TTCAGCTCAATAAGAGCTTTCTCGT
*
36846124 TTCAGCTCAATAGGAGC-TTCTCGT
1 TTCAGCTCAATAAGAGCTTTCTCGT
36846148 TTCCAGCTCAAT
1 TT-CAGCTCAAT
36846160 CGAGCTCACC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 14 0.47
23 5 0.17
24 2 0.07
25 9 0.30
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (25 bp):
TTCAGCTCAATAAGAGCTTTCTCGT
Found at i:36848598 original size:28 final size:28
Alignment explanation
Indices: 36848528--36848683 Score: 224
Period size: 28 Copynumber: 5.6 Consensus size: 28
36848518 ATCATGAGAT
* * * *
36848528 TAGCGCTAAGTGTGCGGGTTTAAATTGTA
1 TAGCACTAAGTGTGCGAGTTT-GATTATA
* *
36848557 CAGCACTAAGTGTGCGAGTTTGATTATG
1 TAGCACTAAGTGTGCGAGTTTGATTATA
*
36848585 TAGCACTAAGTGTGCGAGTTTGATTATG
1 TAGCACTAAGTGTGCGAGTTTGATTATA
36848613 TAGCACTAAGTGTGCGAGTTTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
36848641 TAGCACTAAGTGTGCGAG-TTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
*
36848668 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
36848684 GACTTAATAT
Statistics
Matches: 118, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.20
28 76 0.64
29 18 0.15
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
TAGCACTAAGTGTGCGAGTTTGATTATA
Found at i:36855875 original size:28 final size:28
Alignment explanation
Indices: 36855810--36855960 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
36855800 GAGATTGGCG
* * * *
36855810 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
36855839 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
36855867 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
36855895 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
36855923 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
36855950 CTGAGTGTGCG
1 CTAAGTGTGCG
36855961 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:36859233 original size:52 final size:52
Alignment explanation
Indices: 36859155--36859260 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
36859145 AATAAGGTGA
36859155 CTAATTAGTAGGCTAAATGTGATATTATAGATTAAGGAAAACAAGATTCGGG
1 CTAATTAGTAGGCTAAATGTGATATTATAGATTAAGGAAAACAAGATTCGGG
36859207 CTAATTAGTAGGCTAAATGTGATATTATAGATTAAGGAAAACAAGATTCGGG
1 CTAATTAGTAGGCTAAATGTGATATTATAGATTAAGGAAAACAAGATTCGGG
36859259 CT
1 CT
36859261 TAGAATGAGG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (52 bp):
CTAATTAGTAGGCTAAATGTGATATTATAGATTAAGGAAAACAAGATTCGGG
Found at i:36861182 original size:24 final size:24
Alignment explanation
Indices: 36861150--36861261 Score: 82
Period size: 24 Copynumber: 4.6 Consensus size: 24
36861140 TCTTACTCAT
*
36861150 TCGCACACATAGTGCCACAT-TTCC
1 TCGCACACATAGTGCCACATAAT-C
* *
36861174 TCGCACACATAGTGCTATATAATC
1 TCGCACACATAGTGCCACATAATC
* ** * *
36861198 TCGCACAAATAGTGCCATGTAGTTT
1 TCGCACACATAGTGCCACATA-ATC
*** * *
36861223 TTTAACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCACATAATC
36861247 TCGCACACATAGTGC
1 TCGCACACATAGTGC
36861262 TGAAATTTCT
Statistics
Matches: 65, Mismatches: 21, Indels: 4
0.72 0.23 0.04
Matches are distributed among these distances:
24 49 0.75
25 16 0.25
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (24 bp):
TCGCACACATAGTGCCACATAATC
Found at i:36866577 original size:45 final size:45
Alignment explanation
Indices: 36866478--36866749 Score: 376
Period size: 45 Copynumber: 6.1 Consensus size: 45
36866468 TTTTCTCAAA
*
36866478 TCACCGGCATT-TCA-CCTGCTAGGCTC-GAGGCCC-AA-AATCATT
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATT
* * * *
36866520 TCACCGGTATTATAGCCTGTTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAATATT
*
36866565 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
* *
36866610 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
*
36866655 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAATATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
* *
36866700 TCACCGGCATTATAGCCTGCGAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
36866745 TCACC
1 TCACC
36866750 AGTTCTTTCC
Statistics
Matches: 205, Mismatches: 18, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
42 11 0.05
43 12 0.06
44 7 0.03
45 173 0.84
46 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
Found at i:36868855 original size:27 final size:27
Alignment explanation
Indices: 36868824--36868999 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
36868814 TAAATTGTAC
36868824 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36868851 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36868877 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36868905 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36868933 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36868960 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36868987 AGCACTGAGTGTG
1 AGCACTAAGTGTG
36869000 TGGACTCAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36868938 original size:82 final size:81
Alignment explanation
Indices: 36868825--36868980 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36868815 AAATTGTACA
* *
36868825 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36868889 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36868906 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36868971 TGCGAGTTGA
65 TGCGAATTGA
36868981 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36868992 original size:82 final size:81
Alignment explanation
Indices: 36868821--36868999 Score: 225
Period size: 82 Copynumber: 2.2 Consensus size: 81
36868811 GATTAAATTG
* *
36868821 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36868886 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36868902 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36868966 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36868984 TATAGCACTGAGTGTG
1 TACAGCACTAAGTGTG
36869000 TGGACTCAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36887529 original size:40 final size:40
Alignment explanation
Indices: 36887448--36887707 Score: 375
Period size: 40 Copynumber: 6.6 Consensus size: 40
36887438 AAACCAAGTA
** * *
36887448 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
36887487 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
36887527 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
36887567 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
36887607 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
36887647 CCTTCGGG-CTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
36887686 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
36887708 CAATCCGAAT
Statistics
Matches: 205, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 63 0.31
40 142 0.69
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:36904101 original size:52 final size:51
Alignment explanation
Indices: 36903981--36904158 Score: 247
Period size: 52 Copynumber: 3.5 Consensus size: 51
36903971 ACTAGTGACT
*
36903981 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
* *
36904030 CAAGTTTGGTACTATGTGAAGGCCACTTTGTGAAGAAATATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* *
36904082 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
*
36904133 CAAG-GATGGTACTATGTGCAGGCCAC
1 CAAGTG-TGGTACTATGTGAAGGCCAC
36904159 CGGGTATCCG
Statistics
Matches: 116, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
49 33 0.28
50 3 0.03
51 39 0.34
52 41 0.35
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:36911025 original size:47 final size:47
Alignment explanation
Indices: 36910973--36911380 Score: 629
Period size: 47 Copynumber: 8.6 Consensus size: 47
36910963 GATAATTGTG
* *
36910973 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36911020 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
36911069 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36911118 ATGTGAAAGTGTATATATGTGATAAGTCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36911165 ATGTGAAAGTGTATATCTATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36911214 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36911261 ATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
36911308 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
36911355 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36911381 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 15, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.01
47 199 0.59
48 2 0.01
49 130 0.38
51 5 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36911157 original size:96 final size:96
Alignment explanation
Indices: 36910973--36911380 Score: 641
Period size: 96 Copynumber: 4.3 Consensus size: 96
36910963 GATAATTGTG
36910973 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
36911036 ACATGTGATAAGGCCTAATGGCCGATGTGATGA
66 --ATGTGATAAGGCCTAATGGCCGATGTGATGA
36911069 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36911134 ATGTGATAAGTCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36911165 ATGTGAAAGTGTATATCTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36911230 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36911261 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
36911324 ATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAG-GCCTAATGGCCGATGTGATGA
36911355 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
36911381 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 15, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
93 2 0.01
94 90 0.31
95 1 0.00
96 141 0.48
97 2 0.01
98 56 0.19
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36917785 original size:26 final size:26
Alignment explanation
Indices: 36917756--36917830 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 26
36917746 CACCAATATT
* * *
36917756 GCAGCAAGGCTGCCAGTAATAGTATC
1 GCAGCAAAGCTACCAGTAACAGTATC
* *
36917782 GCAGCAAAACTACTAGTAACAGTATC
1 GCAGCAAAGCTACCAGTAACAGTATC
36917808 GCAGCAAAGCTACCAGTAACAGT
1 GCAGCAAAGCTACCAGTAACAGT
36917831 TTGTGGCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.17
Consensus pattern (26 bp):
GCAGCAAAGCTACCAGTAACAGTATC
Found at i:36917847 original size:25 final size:27
Alignment explanation
Indices: 36917811--36917872 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 27
36917801 CAGTATCGCA
* *
36917811 GCAAAGCTACCAGTAACAGT-T-TGTG
1 GCAAAGCCACCAGAAACAGTATATGTG
*
36917836 GCAAAGCCACCAGAAATAGTATATGTG
1 GCAAAGCCACCAGAAACAGTATATGTG
*
36917863 GCGAAGCCAC
1 GCAAAGCCAC
36917873 AGGTATAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 17 0.55
26 1 0.03
27 13 0.42
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
GCAAAGCCACCAGAAACAGTATATGTG
Found at i:36918033 original size:27 final size:27
Alignment explanation
Indices: 36917983--36918034 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
36917973 ATCATAGCCC
*
36917983 AAATCAGTCATTTACCCTCGAGGGGTA
1 AAATCAGTCATTTACCCTAGAGGGGTA
*
36918010 AAAT-AGTCATTTTACCCTATAGGGG
1 AAATCAGTCA-TTTACCCTAGAGGGG
36918035 AATTTTGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (27 bp):
AAATCAGTCATTTACCCTAGAGGGGTA
Found at i:36929771 original size:49 final size:49
Alignment explanation
Indices: 36929715--36929896 Score: 220
Period size: 49 Copynumber: 3.7 Consensus size: 49
36929705 CTAGTACGCA
* *
36929715 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* * * * ** * *
36929764 TAGTAGCCTGCACTTACTACTACACACGTGATCGAAGCTATTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
* *
36929815 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* *
36929864 TAGTAGACTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
36929897 TCACAATAGA
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 67 0.61
50 6 0.05
51 37 0.34
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:36929842 original size:100 final size:100
Alignment explanation
Indices: 36929708--36929894 Score: 320
Period size: 100 Copynumber: 1.9 Consensus size: 100
36929698 AAGCTATCTA
* * *
36929708 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTGCACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGACT
36929773 GCACTTACTACTACACACGTGATCGAAGCTATTGG
66 GCACTTACTACTACACACGTGATCGAAGCTATTGG
* *
36929808 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACACGTAGTAGACT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGACT
*
36929873 GCACTTAGTACTACACACGTGA
66 GCACTTACTACTACACACGTGA
36929895 CCTCACAATA
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGACT
GCACTTACTACTACACACGTGATCGAAGCTATTGG
Found at i:36930172 original size:27 final size:27
Alignment explanation
Indices: 36930142--36930195 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
36930132 TCATACAACC
* *
36930142 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
36930169 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
36930196 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:36932680 original size:28 final size:29
Alignment explanation
Indices: 36932644--36932708 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
36932634 AAAGTGATTT
* * *
36932644 TTGACAAAAATGTCAATT-AGGGGTTAAA
1 TTGAGAAAAATGTAAATTGAGGGATTAAA
*
36932672 TTGAGAAAAGTGTAAATTGAGGGATTAAA
1 TTGAGAAAAATGTAAATTGAGGGATTAAA
36932701 TTGAGAAA
1 TTGAGAAA
36932709 TAAATGAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 15 0.47
29 17 0.53
ACGTcount: A:0.45, C:0.03, G:0.25, T:0.28
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTGAGGGATTAAA
Found at i:36936041 original size:44 final size:43
Alignment explanation
Indices: 36935988--36936150 Score: 177
Period size: 42 Copynumber: 3.7 Consensus size: 43
36935978 TCGCATCTGT
* * *
36935988 TATGAACTCGGACCAACTCAATGAGCTCGGATGCTCGCATCCA
1 TATGAACTCGGACCAACTCAACGAGCTCGGATGCTCACATACA
* *
36936031 TAATGAACTCGGACCAACTCAATGAGCTAGGATGCTTCACATACA
1 T-ATGAACTCGGACCAACTCAACGAGCTCGGATGC-TCACATACA
* * * * *
36936076 CTATGAACTTGGACCAACTCAACAAGTTCAGAT--TCACATATA
1 -TATGAACTCGGACCAACTCAACGAGCTCGGATGCTCACATACA
*
36936118 TCACGAACTCGGACCAACTCAACGAGCTCGGAT
1 T-ATGAACTCGGACCAACTCAACGAGCTCGGAT
36936151 TTCTTAATTC
Statistics
Matches: 101, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 34 0.34
43 1 0.01
44 32 0.32
45 32 0.32
46 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (43 bp):
TATGAACTCGGACCAACTCAACGAGCTCGGATGCTCACATACA
Found at i:36941688 original size:18 final size:18
Alignment explanation
Indices: 36941662--36941701 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
36941652 TGATACCATA
*
36941662 ATAAACATAATCATAAAC
1 ATAAACATAAGCATAAAC
* *
36941680 ATAATCATAGGCATAAAC
1 ATAAACATAAGCATAAAC
36941698 ATAA
1 ATAA
36941702 GTTTATTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.15, G:0.05, T:0.23
Consensus pattern (18 bp):
ATAAACATAAGCATAAAC
Found at i:36941695 original size:12 final size:12
Alignment explanation
Indices: 36941662--36941688 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
36941652 TGATACCATA
36941662 ATAAACATAATC
1 ATAAACATAATC
36941674 ATAAACATAATC
1 ATAAACATAATC
36941686 ATA
1 ATA
36941689 GGCATAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (12 bp):
ATAAACATAATC
Found at i:36946082 original size:21 final size:20
Alignment explanation
Indices: 36946039--36946090 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
36946029 ATTGTGAGCT
36946039 TTATGAAGTTTGATGATGAA
1 TTATGAAGTTTGATGATGAA
*
36946059 TTATGAAAGTTTGTTGAT-AGA
1 TTATG-AAGTTTGATGATGA-A
*
36946080 TTATCAAGTTT
1 TTATGAAGTTT
36946091 TGTAAAGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (20 bp):
TTATGAAGTTTGATGATGAA
Found at i:36952385 original size:43 final size:41
Alignment explanation
Indices: 36952306--36952413 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 41
36952296 TAGTCAATTA
* *
36952306 GGATTACCCATCCGGCTAAATCCTTTTTATTCTGAAATCAAT
1 GGATTACCCATCGGGCTAAAT-CTTTCTATTCTGAAATCAAT
36952348 GGATTACCCATCTGGGCTAAATCTGTTCTATAT-TGAAATCAAT
1 GGATTACCCATC-GGGCTAAATCT-TTCTAT-TCTGAAATCAAT
* *
36952391 GGATTACTCATCCGGGATAAATC
1 GGATTACCCAT-CGGGCTAAATC
36952414 CTTTACATCA
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
42 14 0.24
43 42 0.72
44 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (41 bp):
GGATTACCCATCGGGCTAAATCTTTCTATTCTGAAATCAAT
Found at i:36957317 original size:20 final size:20
Alignment explanation
Indices: 36957292--36957339 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
36957282 AACGAGAAAC
36957292 GGGCCAAAAATGGAGAAAAT
1 GGGCCAAAAATGGAGAAAAT
36957312 GGGCCAAAAATGGAGAAAAT
1 GGGCCAAAAATGGAGAAAAT
36957332 GGGCCAAA
1 GGGCCAAA
36957340 GTACGAACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.48, C:0.12, G:0.31, T:0.08
Consensus pattern (20 bp):
GGGCCAAAAATGGAGAAAAT
Found at i:36967166 original size:18 final size:18
Alignment explanation
Indices: 36967143--36967178 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36967133 AACTTTCTTT
36967143 TTATTATCTAGCCTAAAA
1 TTATTATCTAGCCTAAAA
36967161 TTATTATCTAGCCTAAAA
1 TTATTATCTAGCCTAAAA
36967179 AATAAAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (18 bp):
TTATTATCTAGCCTAAAA
Found at i:36987019 original size:26 final size:27
Alignment explanation
Indices: 36986990--36987048 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
36986980 CATAACAATC
* *
36986990 ATTTTACCCTAGAGGGGTA-TTCGGTA
1 ATTTTACCCTACAAGGGTATTTCGGTA
*
36987016 ATTTTA-CTTACAAGGGTATTTCGGTA
1 ATTTTACCCTACAAGGGTATTTCGGTA
36987042 ATTTTAC
1 ATTTTAC
36987049 AAATCGAGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGTATTTCGGTA
Found at i:36987759 original size:24 final size:24
Alignment explanation
Indices: 36987727--36987772 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
36987717 CGTTATACGC
36987727 CCACACGCGCGATCGCACGGTTCA
1 CCACACGCGCGATCGCACGGTTCA
36987751 CCACACGCGCGATCGCACGGTT
1 CCACACGCGCGATCGCACGGTT
36987773 GTGTGGCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.20, C:0.41, G:0.26, T:0.13
Consensus pattern (24 bp):
CCACACGCGCGATCGCACGGTTCA
Found at i:36994341 original size:22 final size:22
Alignment explanation
Indices: 36994316--36994361 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
36994306 GAGTTAGAAA
36994316 ATATCCATAATTTGTTTCATGT
1 ATATCCATAATTTGTTTCATGT
36994338 ATATCCATAATTTGTTTCATGT
1 ATATCCATAATTTGTTTCATGT
36994360 AT
1 AT
36994362 CGATGTTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.50
Consensus pattern (22 bp):
ATATCCATAATTTGTTTCATGT
Found at i:37000342 original size:40 final size:40
Alignment explanation
Indices: 37000287--37000640 Score: 627
Period size: 40 Copynumber: 8.8 Consensus size: 40
37000277 GAGCATTTGA
37000287 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37000327 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37000367 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37000407 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37000447 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
37000487 ATATATCCGAGCTAAGACCCGAAGGCATTTGTGCGAATTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37000527 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
37000567 ATATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * *
37000607 CTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
37000641 TTGTGGTAAT
Statistics
Matches: 301, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 301 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:37007698 original size:40 final size:40
Alignment explanation
Indices: 37007643--37008036 Score: 707
Period size: 40 Copynumber: 9.8 Consensus size: 40
37007633 GAGCATTTGA
37007643 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
37007683 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37007723 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37007763 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37007803 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37007843 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
37007883 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
37007923 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
37007963 ATATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * *
37008003 CTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
37008037 TTGTGGTAAT
Statistics
Matches: 341, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 341 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:37010118 original size:47 final size:47
Alignment explanation
Indices: 37010046--37010372 Score: 268
Period size: 47 Copynumber: 6.8 Consensus size: 47
37010036 GGGTATAATT
* *
37010046 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTTGTCTCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCTCAAG
* * ** * *
37010093 TCAATGCCATGTCCCAGACATGGTCTTACACTAACTATCGTCATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTC-TC-AAG
* * * * *
37010142 CCAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAT-ATCCG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCTCA--AG
* * * ** *
37010190 TACCGATGCCATGTCCCAGACATTGTCTTACACTGACAACTC-TAGACATG
1 --CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCGT-CTCAAG
* ** *
37010240 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACTTAACGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CGTCTC-AAG
* *
37010288 TCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCTCAA-G
* * *
37010334 CCGATGTCATGTCCCAGACATTGTCTTCCACTGGCTCTC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
37010373 ATAATGTGGA
Statistics
Matches: 227, Mismatches: 37, Indels: 31
0.77 0.13 0.11
Matches are distributed among these distances:
45 1 0.00
46 24 0.11
47 67 0.30
48 60 0.26
49 39 0.17
50 32 0.14
51 3 0.01
52 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCTCAAG
Found at i:37010266 original size:48 final size:49
Alignment explanation
Indices: 37010046--37010411 Score: 255
Period size: 47 Copynumber: 7.7 Consensus size: 49
37010036 GGGTATAATT
* * * ** *
37010046 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-CTTGTCTC-AAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTACTCGTAACGAGG
* * * *
37010093 TCAATGCCATGTCCCAGACATGGTCTTACACTAACTA-TCGTCATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTACTCGT-AACGAGG
* *
37010142 CCAACGCCATGTCCCAGACATGGTCTTACACT-AGCT-CTCGTATATCCGTA--
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTACTCGTA-A--CG-AGG
* * *
37010192 CCGATGCCATGTCCCAGACATTGTCTTACACTGACAACTC-TAGAC-ATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTACTCGTA-ACGAGG
*
37010240 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACT--TAACGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TACTCGTAACGAGG
* ** * *
37010288 TCGATG-CATGTCCCAGACAT-GTCTTACACT-AGCT-CTCGTCTCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTACTCGTAACGAGG
* * * * * * *
37010334 CCGATGTCATGTCCCAGACATTGTCTTCCACTGGCT-CTCATAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTACTCGTAACGAGG
* *
37010382 ACGATG-CATGTCCTAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
37010412 AGCTCACAAT
Statistics
Matches: 259, Mismatches: 39, Indels: 43
0.76 0.11 0.13
Matches are distributed among these distances:
44 2 0.01
45 1 0.00
46 30 0.12
47 77 0.30
48 68 0.26
49 41 0.16
50 33 0.13
51 6 0.02
52 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTACTCGTAACGAGG
Found at i:37010349 original size:94 final size:95
Alignment explanation
Indices: 37010046--37010415 Score: 339
Period size: 94 Copynumber: 3.9 Consensus size: 95
37010036 GGGTATAATT
* ** * *
37010046 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-TGTCTC-AAGTCAATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCT-TAACGAGGTCGATGCCATGTCCCA
* * *
37010109 GACATGGTCTTACACTAACTATCGTCATCGAGG
65 GACAT-GTCTTACACTAGCTATCGTC-TCAACG
* * * * *
37010142 CCAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCCGTA--CCGATGCCATGTC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-T-TA-ACG-AGGTCGATGCCATGTC
*
37010205 CCAGACATTGTCTTACACT-GAC-AAC-TCT-AGACATG
62 CCAGACA-TGTCTTACACTAG-CTATCGTCTCA-AC--G
37010240 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACTTAACGAGGTCGATG-CATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CTTAACGAGGTCGATGCCATGTCCCA
*
37010303 GACATGTCTTACACTAGCTCTCGTCTCAACG
65 GACATGTCTTACACTAGCTATCGTCTCAACG
* * * * * * * *
37010334 CCGATGTCATGTCCCAGACATTGTCTTCCACTGGCTCTCATAATGTGGACGATG-CATGTCCTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAACGAGGTCGATGCCATGTCCCAG
37010398 ACATGTCTTACACTAGCT
66 ACATGTCTTACACTAGCT
37010416 CACAATAACC
Statistics
Matches: 228, Mismatches: 28, Indels: 38
0.78 0.10 0.13
Matches are distributed among these distances:
94 86 0.38
95 18 0.08
96 48 0.21
97 5 0.02
98 39 0.17
99 30 0.13
100 1 0.00
101 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAACGAGGTCGATGCCATGTCCCAG
ACATGTCTTACACTAGCTATCGTCTCAACG
Found at i:37010387 original size:142 final size:146
Alignment explanation
Indices: 37010096--37010412 Score: 366
Period size: 142 Copynumber: 2.2 Consensus size: 146
37010086 TCTCAAGTCA
*
37010096 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGTCATCGAGGCCAACGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGTCAACGAGGCCAACGCCATGTCCCAGAC
*
37010161 ATGGTCTTACACTAGCTCTCGTATATCCGTACCGATGCCATGTCCCAGACATTGTCTTACACTGA
66 ATGGTCTTACACTAGCTCTCGTATATACG-ACCGATGCCATGTCCCAGACATTGTCTTACACTGA
*
37010226 CAACTCTAGACATGCCG
130 CAACTCTAGACATGACG
** * * * *
37010243 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-TAC-TTAACGAGGTCGATG-CATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTAT-CGTCAACGAGGCCAACGCCATGTCCCAGA
* * *
37010305 CAT-GTCTTACACTAGCTCTCGTCTCA-ACG-CCGATGTCATGTCCCAGACATTGTCTTCCACTG
65 CATGGTCTTACACTAGCTCTCGTAT-ATACGACCGATGCCATGTCCCAGACATTGTCTTACACTG
* * **
37010367 GC-TCTCATA-ATGTGGACG
129 ACAACTC-TAGACAT-GACG
*
37010385 ATG-CATGTCCTAGACAT-GTCTTACACTA
1 ATGCCATGTCCCAGACATGGTCTTACACTA
37010413 GCTCACAATA
Statistics
Matches: 148, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
140 10 0.07
141 18 0.12
142 40 0.27
144 22 0.15
145 15 0.10
146 11 0.07
147 32 0.22
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (146 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGTCAACGAGGCCAACGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCGTATATACGACCGATGCCATGTCCCAGACATTGTCTTACACTGAC
AACTCTAGACATGACG
Found at i:37011101 original size:13 final size:13
Alignment explanation
Indices: 37011083--37011107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37011073 CTAAAAGTAA
37011083 AAAAATCATCAAG
1 AAAAATCATCAAG
37011096 AAAAATCATCAA
1 AAAAATCATCAA
37011108 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:37016608 original size:21 final size:22
Alignment explanation
Indices: 37016584--37016627 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
37016574 CGTGACACAG
37016584 GGGC-ACACGCCCATGTGAGAA
1 GGGCAACACGCCCATGTGAGAA
*
37016605 GGGCAACACGCCCGTGTGAGAA
1 GGGCAACACGCCCATGTGAGAA
37016627 G
1 G
37016628 CACAACACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.27, C:0.27, G:0.36, T:0.09
Consensus pattern (22 bp):
GGGCAACACGCCCATGTGAGAA
Found at i:37016633 original size:22 final size:22
Alignment explanation
Indices: 37016588--37016645 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
37016578 ACACAGGGGC
* **
37016588 ACACGCCCATGTGAGAAGGGCA
1 ACACGCCCGTGTGAGAAGCACA
37016610 ACACGCCCGTGTGAGAAGCACA
1 ACACGCCCGTGTGAGAAGCACA
* *
37016632 ACACACCTGTGTGA
1 ACACGCCCGTGTGA
37016646 CGATATCAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.31, C:0.29, G:0.28, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGAGAAGCACA
Found at i:37017939 original size:48 final size:49
Alignment explanation
Indices: 37017740--37018067 Score: 186
Period size: 47 Copynumber: 6.9 Consensus size: 49
37017730 ATAGGGTACA
* * * * *
37017740 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-TGTCTC-
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTACTATCACG
* * * * * *
37017787 AAGTCGATGTCATGACCCAAACATGGTCTTACACTAGCTCTCGCATATC-CG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-T-AC-TATCACG
* * * *
37017838 -TGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACCT-CTAT-ACG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTG--GCTTACTATCACG
*
37017886 -TGCCGATGCCATGTCCCAAACATGATCTTACACTGGCTTACT-TCACG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTACTATCACG
* * * * * *
37017933 AGGCCGATTCCATGTCCCAGACAT-GTCTTACACTAGCTTTCGTCTCAACG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTAC-TATC-ACG
* * * **
37017983 -T--CGATGCCAAGTCCCAAACATTGTCTTACATTGGC-T-CTCAT-AAT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTACT-ATCACG
* * *
37018027 ATGGCCGATG-CATGTCCCAGACAT-GTCTCACACTAGCTTAC
1 AT-GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTAC
37018068 AATAACCCAT
Statistics
Matches: 215, Mismatches: 44, Indels: 43
0.71 0.15 0.14
Matches are distributed among these distances:
44 1 0.00
45 2 0.01
46 15 0.07
47 82 0.38
48 75 0.35
49 3 0.01
50 32 0.15
51 4 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (49 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTACTATCACG
Found at i:37018750 original size:13 final size:13
Alignment explanation
Indices: 37018732--37018756 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37018722 TTCTAAAAGT
37018732 AGAAAAATCATCG
1 AGAAAAATCATCG
37018745 AGAAAAATCATC
1 AGAAAAATCATC
37018757 AAAATAACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (13 bp):
AGAAAAATCATCG
Found at i:37020047 original size:20 final size:20
Alignment explanation
Indices: 37020024--37020081 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
37020014 AAATGTCAAT
37020024 AGAGGCACCAAAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
** *
37020044 AGAGGCACTGAAGTGCAAAT
1 AGAGGCACCAAAGTGCAAAC
*
37020064 AGAGGCATCAAAGTGCAA
1 AGAGGCACCAAAGTGCAA
37020082 TCCTGTACAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.43, C:0.19, G:0.28, T:0.10
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAC
Found at i:37020419 original size:14 final size:14
Alignment explanation
Indices: 37020396--37020433 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
37020386 ATAAAGAAAC
*
37020396 ACACAAACACACAT
1 ACACACACACACAT
37020410 ACACACACACACAT
1 ACACACACACACAT
*
37020424 ACATACACAC
1 ACACACACAC
37020434 TACGAACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.53, C:0.39, G:0.00, T:0.08
Consensus pattern (14 bp):
ACACACACACACAT
Found at i:37021069 original size:5 final size:5
Alignment explanation
Indices: 37021059--37021086 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
37021049 ACCTTTTGTG
37021059 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
37021087 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:37025800 original size:13 final size:13
Alignment explanation
Indices: 37025782--37025806 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37025772 ATTTTACTTT
37025782 TATTTTATTTTAC
1 TATTTTATTTTAC
37025795 TATTTTATTTTA
1 TATTTTATTTTA
37025807 TTTAAATGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTTTATTTTAC
Found at i:37029666 original size:19 final size:20
Alignment explanation
Indices: 37029631--37029672 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
37029621 ATTTAAGCAT
37029631 TCAATTCACATAAAATT-AA
1 TCAATTCACATAAAATTCAA
*
37029650 TCAATTCATA-AACAATTCAA
1 TCAATTCACATAA-AATTCAA
37029670 TCA
1 TCA
37029673 CAATTAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.65
20 5 0.25
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (20 bp):
TCAATTCACATAAAATTCAA
Found at i:37030804 original size:16 final size:17
Alignment explanation
Indices: 37030757--37030804 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
37030747 GATCTAGCTT
*
37030757 AAGAATAATATAAAACAC
1 AAGAAAAATAT-AAACAC
37030775 AAGAAAAATATAAACA-
1 AAGAAAAATATAAACAC
* *
37030791 AAGTAAACTATAAA
1 AAGAAAAATATAAA
37030805 GCTTAGTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 12 0.44
17 5 0.19
18 10 0.37
ACGTcount: A:0.69, C:0.08, G:0.06, T:0.17
Consensus pattern (17 bp):
AAGAAAAATATAAACAC
Found at i:37035776 original size:40 final size:40
Alignment explanation
Indices: 37035671--37035877 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
37035661 CGGATGATAA
* *
37035671 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
37035711 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37035750 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37035790 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37035830 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
37035870 CC-GGCTAA
1 CCGGGCTAA
37035878 ATTCTGAAGG
Statistics
Matches: 156, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 43 0.28
40 113 0.72
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37042655 original size:15 final size:13
Alignment explanation
Indices: 37042628--37042652 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37042618 TATGTGCGAC
37042628 ACACGGTCATGTT
1 ACACGGTCATGTT
37042641 ACACGGTCATGT
1 ACACGGTCATGT
37042653 GTTCGCTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (13 bp):
ACACGGTCATGTT
Found at i:37044951 original size:18 final size:19
Alignment explanation
Indices: 37044924--37044959 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
37044914 TAATATAAGG
*
37044924 TCATTGATTTC-ACTTAAA
1 TCATTCATTTCAACTTAAA
37044942 TCATTCATTTCAACTTAA
1 TCATTCATTTCAACTTAA
37044960 GCATACAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.44
Consensus pattern (19 bp):
TCATTCATTTCAACTTAAA
Found at i:37056310 original size:6 final size:6
Alignment explanation
Indices: 37056288--37056320 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
37056278 NNNNNNNNNN
37056288 TCTGAT TCTG-T TACTGAT TCTGAT TCTGAT TCT
1 TCTGAT TCTGAT T-CTGAT TCTGAT TCTGAT TCT
37056321 TATTTTGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 2 0.08
6 21 0.84
7 2 0.08
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.52
Consensus pattern (6 bp):
TCTGAT
Found at i:37060670 original size:10 final size:11
Alignment explanation
Indices: 37060655--37060700 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
37060645 ATTCTGATAT
*
37060655 ACATGATTTG-
1 ACATGATATGC
37060665 ACATGATATGC
1 ACATGATATGC
37060676 ACATGATATG-
1 ACATGATATGC
*
37060686 -TATGATATGC
1 ACATGATATGC
37060696 ACATG
1 ACATG
37060701 TTATATTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.27
10 9 0.30
11 13 0.43
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:37060681 original size:11 final size:10
Alignment explanation
Indices: 37060649--37060700 Score: 54
Period size: 9 Copynumber: 5.2 Consensus size: 10
37060639 CATGAGATTC
37060649 TGATAT-ACA
1 TGATATGACA
*
37060658 TGATTTGACA
1 TGATATGACA
37060668 TGATATGCACA
1 TGATATG-ACA
*
37060679 TGATATG-TA
1 TGATATGACA
37060688 TGATATGCACA
1 TGATATG-ACA
37060699 TG
1 TG
37060701 TTATATTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 13 0.37
10 9 0.26
11 13 0.37
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:37063446 original size:46 final size:45
Alignment explanation
Indices: 37063396--37063568 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
37063386 TGGTTGAGCA
37063396 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * * *
37063442 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
37063487 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
37063535 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37063569 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:37063545 original size:93 final size:93
Alignment explanation
Indices: 37063393--37063563 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
37063383 GGATGGTTGA
* *
37063393 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37063458 TGAGTCCAAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
* * *
37063486 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
37063551 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
37063564 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:37068020 original size:101 final size:98
Alignment explanation
Indices: 37067826--37068055 Score: 291
Period size: 100 Copynumber: 2.3 Consensus size: 98
37067816 TATTGTGAGG
*
37067826 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* * *
37067891 AAGTGCAGGCTACTATGCGTAGCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA-TT-GA
* * * * * *
37067926 TCATGTGTGTAGTCCTATGTGCAGGCTACTACGTGTATCAGA-AGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA-ATT-GGTCACATGTGTAGTA
* *
37067990 CTAAGTGCAGGCTACTACGTGTACCAGATAATTGG
64 CTAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* *
37068025 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
37068056 TGCGTATTAG
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
99 28 0.25
100 42 0.38
101 41 0.37
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:37068068 original size:49 final size:50
Alignment explanation
Indices: 37067823--37068055 Score: 283
Period size: 49 Copynumber: 4.7 Consensus size: 50
37067813 AGCTATTGTG
*
37067823 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
37067873 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTAGCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * ** * * * *
37067923 CGATCATGTGTGTAGTCCTATGTGCAGGCTACTACGTGTATCAGA-AGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA-ATT
*
37067973 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
37068023 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
37068056 TGCGTATTAG
Statistics
Matches: 153, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
49 72 0.47
50 46 0.30
51 35 0.23
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:37070850 original size:16 final size:15
Alignment explanation
Indices: 37070812--37070850 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
37070802 TGGATTCTCG
*
37070812 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
37070827 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
37070842 TATTCTTGG
1 TA-TCTTGG
37070851 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:37073204 original size:49 final size:50
Alignment explanation
Indices: 37073108--37073340 Score: 265
Period size: 49 Copynumber: 4.7 Consensus size: 50
37073098 AGCTATTGTG
* * * *
37073108 AGGTCACGTGTGAAGTACTAAGTACAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCAGATAATT
* * * *
37073158 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTAGCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCAGATAA-TT
* * * * * **
37073208 CGATCACGTGAGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCAGATAATT
* *
37073258 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGT-GCCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAG-CAGATAATT
*
37073308 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
37073341 TGCGTACCAG
Statistics
Matches: 153, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
49 70 0.46
50 46 0.30
51 37 0.24
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCAGATAATT
Found at i:37075221 original size:18 final size:18
Alignment explanation
Indices: 37075198--37075232 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37075188 CGTTATTTAT
*
37075198 TCAAAAAATTTATGATGC
1 TCAAAAAATTGATGATGC
*
37075216 TCAAAAAGTTGATGATG
1 TCAAAAAATTGATGATG
37075233 ATTTGATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (18 bp):
TCAAAAAATTGATGATGC
Found at i:37077885 original size:131 final size:133
Alignment explanation
Indices: 37077722--37078174 Score: 406
Period size: 131 Copynumber: 3.5 Consensus size: 133
37077712 AAAAAACCGA
* * * *** *
37077722 AACCCAGCAC-AGTAGGTCATGGTTCCTCGAATTTTGAAACATCGAGCGTTGCCTT-ATTTTTAG
1 AACCCAGCACGA-TAGGGCACGATTCCTCGAATTGCCAAACATCGAGCATTGCCTTCATTTTTAG
*
37077785 A-ATTTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAAC-AGGAA
65 AGAGTTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGA-GAA
37077848 ATTGC
129 ATTGC
* * * * * * *
37077853 AACCCAGCACGGTAGGGCACAATTCCCCGAATTGCCAAACATCGAGTATTACCTT--TGTTTGGA
1 AACCCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACATCGAGCATTGCCTTCATTTTTAG-
* * * * ** *
37077916 AGAGTTTTT-AAAGATATGAGTGAAATTCCAAAGGAATCTTCGATTGTTCCGAACAAACGATAAA
65 AGAGTTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAA
*
37077980 TCGC
130 TTGC
* * * * * *
37077984 AACCAAGCACGATAGGGCACGATT--TTGAATTGCCAAACACCGAGTAATGCCTTCA-TTTTAAA
1 AACCCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACATCGAGCATTGCCTTCATTTTTAGA
* * * * * * * *
37078046 GAGTTTTTAGAAAACGTGAATGAAATTCTAAAGGGACATTCAATTATTTTGAGCAAACGAGAAAT
66 GAGTTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAAT
*
37078111 TAC
131 TGC
* * * * *
37078114 AACCCAACACGTTAGGGCACGATT-CTGCGAATTGTCAAATATCGAACATTGCCTTCATTTT
1 AACCCAGCACGATAGGGCACGATTCCT-CGAATTGCCAAACATCGAGCATTGCCTTCATTTT
37078175 AATAAATTTT
Statistics
Matches: 251, Mismatches: 61, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
129 33 0.13
130 71 0.28
131 114 0.45
132 30 0.12
133 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (133 bp):
AACCCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACATCGAGCATTGCCTTCATTTTTAGA
GAGTTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAAT
TGC
Found at i:37087305 original size:40 final size:38
Alignment explanation
Indices: 37087203--37087305 Score: 118
Period size: 39 Copynumber: 2.6 Consensus size: 38
37087193 ATGTGGTATT
* *
37087203 ATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGAATT
1 ATATCCGGGTTAAATCCCGCAGGCCTAATGCTGGAATG
* * *
37087241 ATATCCGGACTTATAGT-CCGCAGGCCTAGTGCTGGTAATAG
1 ATATCCGG-GTTA-AATCCCGCAGGCCTAATGCTGG-AAT-G
37087282 ATATCCGGGTTAAATCCCGCAGGC
1 ATATCCGGGTTAAATCCCGCAGGC
37087306 TTTGTGCTAG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
38 8 0.15
39 21 0.40
40 16 0.30
41 8 0.15
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCCTAATGCTGGAATG
Found at i:37087313 original size:40 final size:38
Alignment explanation
Indices: 37087203--37087313 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 38
37087193 ATGTGGTATT
* *
37087203 ATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGAATT
1 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGAATG
* * *
37087241 ATATCCGGACTTATAGT-CCGCAGGCCTAGTGCTGGTAATAG
1 ATATCCGG-GTTA-AATCCCGCAGGCTTAGTGCTGG-AAT-G
*
37087282 ATATCCGGGTTAAATCCCGCAGGCTTTGTGCT
1 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCT
37087314 AGAAATTGGA
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
38 8 0.14
39 21 0.36
40 22 0.37
41 8 0.14
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGAATG
Found at i:37092184 original size:40 final size:40
Alignment explanation
Indices: 37092090--37092234 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
37092080 TACTCGAATG
*
37092090 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
37092131 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
37092171 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
37092211 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
37092235 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:37100192 original size:40 final size:40
Alignment explanation
Indices: 37100098--37100241 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
37100088 TACTCGAATG
*
37100098 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
37100139 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
37100179 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
37100219 ATATCCGGGTTAAG-ACCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
37100242 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 9 0.10
40 53 0.58
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:37103893 original size:46 final size:46
Alignment explanation
Indices: 37103843--37103997 Score: 190
Period size: 46 Copynumber: 3.4 Consensus size: 46
37103833 TGGTTGAGCA
* *
37103843 TCCGAACTCGTTGAGTTGAGTGCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
37103889 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTACTAGACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--CGA-ACG
37103935 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
37103981 CCCGAGCTCGTTGAGTT
1 TCCGAACTCGTTGAGTT
37103998 ATCCATGTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 75 0.82
47 4 0.04
49 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:37103913 original size:20 final size:20
Alignment explanation
Indices: 37103888--37103959 Score: 54
Period size: 20 Copynumber: 3.3 Consensus size: 20
37103878 GGATGCGAAT
37103888 GTCCGAACTCGTTGAGTTGA
1 GTCCGAACTCGTTGAGTTGA
** *
37103908 GTCCGAGTTCGTGAGATGTACTAGA
1 GTCCGAACTCGT-TGA-GT--T-GA
*
37103933 CATCCGAACTCGTTGAGTTGA
1 -GTCCGAACTCGTTGAGTTGA
37103954 GTCCGA
1 GTCCGA
37103960 GTTCACTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
20 15 0.39
21 4 0.11
22 3 0.08
24 3 0.08
25 4 0.11
26 9 0.24
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (20 bp):
GTCCGAACTCGTTGAGTTGA
Found at i:37111183 original size:46 final size:46
Alignment explanation
Indices: 37111133--37111260 Score: 197
Period size: 45 Copynumber: 2.8 Consensus size: 46
37111123 TGGTTGAGCA
*
37111133 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG-ATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGCAT-CGAACG
37111179 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGCATCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGCATCGAACG
* * *
37111224 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37111261 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
45 38 0.50
46 38 0.50
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGCATCGAACG
Found at i:37123969 original size:30 final size:29
Alignment explanation
Indices: 37123923--37123982 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
37123913 TTCCTGAGCC
*
37123923 TAGGGGTAAAAGTGTAAATATGCAAACGTT
1 TAGGGGCAAAAGTGTAAATATGCAAA-GTT
* * *
37123953 TAGGGGCAAAATTGTAATTTTGCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAGTT
37123982 T
1 T
37123983 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (29 bp):
TAGGGGCAAAAGTGTAAATATGCAAAGTT
Found at i:37129903 original size:29 final size:28
Alignment explanation
Indices: 37129834--37129958 Score: 144
Period size: 29 Copynumber: 4.4 Consensus size: 28
37129824 AAGTCTATAT
* *
37129834 ACATACATATGGCCAACTAGGCCC-AATC
1 ACATTCATATGGCC-ATTAGGCCCAAATC
* * *
37129862 TCATTCATATGGCCTATTAGGCCAAAATT
1 ACATTCATATGGCC-ATTAGGCCCAAATC
*
37129891 ACATTCGTATGGCACATTAGGCCCAAATC
1 ACATTCATATGGC-CATTAGGCCCAAATC
*
37129920 AGATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGG-CCATTAGGCCCAAATC
37129949 ACATTCATAT
1 ACATTCATAT
37129959 TCATGCTTTC
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
28 19 0.23
29 60 0.74
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCATTAGGCCCAAATC
Found at i:37130174 original size:16 final size:15
Alignment explanation
Indices: 37130153--37130202 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
37130143 CCAAACATTC
37130153 GGCTTTCCGGCATTTT
1 GGCTTT-CGGCATTTT
* *
37130169 GGCTTTTTGGCATTTC
1 GGC-TTTCGGCATTTT
37130185 GGCATTTCGGCATTTT
1 GGC-TTTCGGCATTTT
37130201 GG
1 GG
37130203 GATTTGCCGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
16 25 0.89
17 3 0.11
ACGTcount: A:0.08, C:0.20, G:0.28, T:0.44
Consensus pattern (15 bp):
GGCTTTCGGCATTTT
Found at i:37130176 original size:8 final size:8
Alignment explanation
Indices: 37130161--37130207 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
37130151 TCGGCTTTCC
37130161 GGCATTTT
1 GGCATTTT
*
37130169 GGCTTTTT
1 GGCATTTT
*
37130177 GGCATTTC
1 GGCATTTT
*
37130185 GGCATTTC
1 GGCATTTT
37130193 GGCATTTT
1 GGCATTTT
*
37130201 GGGATTT
1 GGCATTT
37130208 GCCGATCTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.11, C:0.15, G:0.28, T:0.47
Consensus pattern (8 bp):
GGCATTTT
Found at i:37130189 original size:24 final size:24
Alignment explanation
Indices: 37130160--37130207 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
37130150 TTCGGCTTTC
* *
37130160 CGGCATTTTGGCTTTTTGGCATTT
1 CGGCATTTCGGCATTTTGGCATTT
*
37130184 CGGCATTTCGGCATTTTGGGATTT
1 CGGCATTTCGGCATTTTGGCATTT
37130208 GCCGATCTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.10, C:0.17, G:0.27, T:0.46
Consensus pattern (24 bp):
CGGCATTTCGGCATTTTGGCATTT
Found at i:37131448 original size:16 final size:16
Alignment explanation
Indices: 37131424--37131455 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37131414 AAATTTGAGA
*
37131424 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
37131440 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
37131456 GCGTTACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:37143052 original size:16 final size:16
Alignment explanation
Indices: 37143028--37143058 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37143018 ATTTCAAGGT
*
37143028 TAAATAAGTAAATTAG
1 TAAACAAGTAAATTAG
37143044 TAAACAAGTAAATTA
1 TAAACAAGTAAATTA
37143059 AAACAAAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.29
Consensus pattern (16 bp):
TAAACAAGTAAATTAG
Found at i:37152835 original size:21 final size:21
Alignment explanation
Indices: 37152809--37152850 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
37152799 TTTTCCTATT
37152809 TTAATTTAAAAGCTCATTAAC
1 TTAATTTAAAAGCTCATTAAC
37152830 TTAATTTAAAAGCTCATTAAC
1 TTAATTTAAAAGCTCATTAAC
37152851 AACTTGCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (21 bp):
TTAATTTAAAAGCTCATTAAC
Found at i:37156366 original size:30 final size:30
Alignment explanation
Indices: 37156331--37156387 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
37156321 TTTACGAGCC
37156331 TAGGGGCAAAAAT-GTAATTTTGACAAAGTT
1 TAGGGG-AAAAATAGTAATTTTGACAAAGTT
* *
37156361 TAGGGGGAAAATAGTAATTTTGCCAAA
1 TAGGGGAAAAATAGTAATTTTGACAAA
37156388 ATATGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAATAGTAATTTTGACAAAGTT
Done.