Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 11 of 344
Found at i:3910493 original size:142 final size:142
Alignment explanation
Indices: 3910160--3910715 Score: 588
Period size: 143 Copynumber: 4.0 Consensus size: 142
3910150 TAGATCAAAG
* * * *
3910160 ATGGCGAATCTTATTTTCCTGAAGTTGCAGTGGAGCAAATTGAAGCCA-TCAGCCTTATCTCCCT
1 ATGGCGAATCTTATATTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACT-AACCTTATCTCTCT
** * * *
3910224 AAAGTTGCAATGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAAAATTGCAGTAGAATAGAT
65 AAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCT-AAGTTTCAGTGGAATAGAT
3910289 TAAAGCTACAAATT
129 TAAAGCTACAAATT
* *
3910303 ATGGCGAATCTTATATTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTGACCTTATCTCTATA
1 ATGGCGAATCTTATATTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAACCTTATCTCTCTA
* * * *
3910368 AAGTTGCAGCAGAGCAGGCTGAAGAAAGCGGATCTTATTTCCCTGAAGTTTCAGTGGAAT-GATT
66 AAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCT-AAGTTTCAGTGGAATAGATT
* *
3910432 GAAGCTACGAATT
130 AAAGCTACAAATT
* * * * * *
3910445 ATGGCGGATCTCATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAACCTTATCTCTCTG
1 ATGGCGAATCTTATATTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAACCTTATCTCTCTA
*
3910510 AAGTTGCAGCGGAGTAGACTGAAGACAGCGAATCTTATTTCCCTAACGTTGT-AGTGGAATAGAT
66 AAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAA-GTT-TCAGTGGAATAGAT
3910574 TAAAGCTACAAATT
129 TAAAGCTACAAATT
* * * * * * * *
3910588 AT-G-G--TC-------CC-GAAGTTGTAGTGCAGTAGATTTAAGCCACCAGCCTTATCCCCCTA
1 ATGGCGAATCTTATATTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAACCTTATCTCTCTA
* ** * *
3910641 AAGTTGCAGCGGAGCAGACTGAAGACCA-AGAATCTTATTTCCCTGAAGTCGCAGAGGAACAGAT
66 AAGTTGCAGCGGAGCAGACTGAAGA-CAGCGAATCTTATTTCCCT-AAGTTTCAGTGGAATAGAT
3910705 TGAAA-CTACAA
129 T-AAAGCTACAA
3910716 GTCGCAAACC
Statistics
Matches: 357, Mismatches: 48, Indels: 28
0.82 0.11 0.06
Matches are distributed among these distances:
131 94 0.26
132 9 0.03
139 2 0.01
141 3 0.01
142 123 0.34
143 125 0.35
144 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (142 bp):
ATGGCGAATCTTATATTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAACCTTATCTCTCTA
AAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAAGTTTCAGTGGAATAGATTA
AAGCTACAAATT
Found at i:3911052 original size:179 final size:179
Alignment explanation
Indices: 3910720--3911054 Score: 402
Period size: 179 Copynumber: 1.9 Consensus size: 179
3910710 CTACAAGTCG
* * * * *
3910720 CAAACCTTATCTCTCTGAAGTTGCAGTGGTGCAGGTTGAAATTATCAATTCTTACCTCCTTGAAG
1 CAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAATTACCAATTCTTACCTCCTTGAAG
* * * ** * *
3910785 TTCCAACGGAATAGATCGAAGTTACAAGTGTCTTCTTTCTGAAATTACATTGGAACAGATCGAAG
66 TTCCAACGGAATAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACATTGGAACAAATCGAAG
* * *
3910850 CCACAATCTTTATTTCTCTGAAGTTGCAGTAGAGTAGGATAAAAATACA
131 CCACAATCTTAATCTCCCTGAAGTTGCAGTAGAGTAGGATAAAAATACA
* * * *
3910899 CAAACTTTATCTCCCTTAAGTTGCAATGGAGCAGATTGAAATTACCAATTCTTATCTTCTTGAAG
1 CAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAATTACCAATTCTTACCTCCTTGAAG
** * * * ** *
3910964 TTCCAGTGGAGTAGATCGATGCTACAAATCTCTTCTCCCTAAAATTATATTGGAGTAAATTGAAG
66 TTCCAACGGAATAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACATTGGAACAAATCGAAG
*
3911029 CCATAAGTC-TAATCTCCCTGAAGTTG
131 CCACAA-TCTTAATCTCCCTGAAGTTG
3911055 TAGTGGATTA
Statistics
Matches: 127, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
179 125 0.98
180 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (179 bp):
CAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAATTACCAATTCTTACCTCCTTGAAG
TTCCAACGGAATAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACATTGGAACAAATCGAAG
CCACAATCTTAATCTCCCTGAAGTTGCAGTAGAGTAGGATAAAAATACA
Found at i:3911410 original size:27 final size:27
Alignment explanation
Indices: 3911370--3911424 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
3911360 ACTCAGAAAC
*
3911370 CCTAGGCGCCGCAATGGCCACCAGCAA
1 CCTAGGCGCCGCAATGGCAACCAGCAA
*
3911397 CCTAGGCGCTGCAATGGCAACCAGCAA
1 CCTAGGCGCCGCAATGGCAACCAGCAA
3911424 C
1 C
3911425 TTCCGTGTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.38, G:0.25, T:0.09
Consensus pattern (27 bp):
CCTAGGCGCCGCAATGGCAACCAGCAA
Found at i:3914142 original size:31 final size:30
Alignment explanation
Indices: 3914072--3914143 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
3914062 TTACAACACA
* *
3914072 ATAACGTGACTAAAATGTAACATTTCAAAC
1 ATAAAGTGACTAAAATGTAACATTGCAAAC
3914102 ATAAA-TGACTAAAATGTAAC-TTAAGGCAAAC
1 ATAAAGTGACTAAAATGTAACATT---GCAAAC
3914133 A-AAAGTGACTA
1 ATAAAGTGACTA
3914144 TTTGGTAGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
28 2 0.06
29 15 0.42
30 7 0.19
31 12 0.33
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.24
Consensus pattern (30 bp):
ATAAAGTGACTAAAATGTAACATTGCAAAC
Found at i:3914277 original size:29 final size:28
Alignment explanation
Indices: 3914224--3914278 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
3914214 CTCTTCATAA
* *
3914224 TTTTAGAATTTAATATCTGTGCTTTTAT
1 TTTTAGAATTTAATATCTCTACTTTTAT
*
3914252 TTTTAAGAATTTAATCTCTCTACTTTT
1 TTTT-AGAATTTAATATCTCTACTTTT
3914279 TAAATTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.25, C:0.11, G:0.07, T:0.56
Consensus pattern (28 bp):
TTTTAGAATTTAATATCTCTACTTTTAT
Found at i:3922332 original size:17 final size:17
Alignment explanation
Indices: 3922302--3922335 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
3922292 TATATCGAAT
3922302 ATATGTATAAATAAATA
1 ATATGTATAAATAAATA
3922319 ATAT-TATAATATAAATA
1 ATATGTATAA-ATAAATA
3922336 TTAAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
ATATGTATAAATAAATA
Found at i:3922946 original size:16 final size:15
Alignment explanation
Indices: 3922921--3922953 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
3922911 AGCGCTCTCC
3922921 AACCTCACAAGAATA
1 AACCTCACAAGAATA
3922936 AACCATCACAAGAATA
1 AACC-TCACAAGAATA
3922952 AA
1 AA
3922954 TGGTGTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.58, C:0.24, G:0.06, T:0.12
Consensus pattern (15 bp):
AACCTCACAAGAATA
Found at i:3926354 original size:22 final size:24
Alignment explanation
Indices: 3926302--3926354 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
3926292 ATGCATTTAT
3926302 ATATATATATATAAAAGTTAGTTTG
1 ATATATATATATAAAAGTTAG-TTG
* *
3926327 A-CTATATATATAACA-TTA-TTG
1 ATATATATATATAAAAGTTAGTTG
3926348 ATATATA
1 ATATATA
3926355 AGAAAGTGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 4 0.17
22 4 0.17
23 3 0.12
24 12 0.50
25 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (24 bp):
ATATATATATATAAAAGTTAGTTG
Found at i:3926583 original size:21 final size:22
Alignment explanation
Indices: 3926542--3926583 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
3926532 AATCATACGA
3926542 TAAAATGTAATATTTATGGTAT
1 TAAAATGTAATATTTATGGTAT
3926564 TAAAAT-TAA-ATTTAATGGTA
1 TAAAATGTAATATTT-ATGGTA
3926584 ATATATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 9 0.47
22 6 0.32
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (22 bp):
TAAAATGTAATATTTATGGTAT
Found at i:3926609 original size:20 final size:19
Alignment explanation
Indices: 3926564--3926610 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
3926554 TTTATGGTAT
* *
3926564 TAAAAT-TAAATTTAATGG
1 TAAAATATAAAATTAATAG
*
3926582 TAATATATAAAATTAATAG
1 TAAAATATAAAATTAATAG
3926601 TAAAAATATA
1 T-AAAATATA
3926611 GAAAATATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 5 0.22
19 11 0.48
20 7 0.30
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (19 bp):
TAAAATATAAAATTAATAG
Found at i:3930831 original size:34 final size:34
Alignment explanation
Indices: 3930793--3930860 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
3930783 ACATAACGCA
* *
3930793 TAGTACAATAATGATAAATAAGATACTATAAAAT
1 TAGTACAATAATGATAAATAAAACACTATAAAAT
3930827 TAGTACAATAATGATAAATAAAACACTATAAAAT
1 TAGTACAATAATGATAAATAAAACACTATAAAAT
3930861 AATGCATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.28
Consensus pattern (34 bp):
TAGTACAATAATGATAAATAAAACACTATAAAAT
Found at i:3933730 original size:14 final size:15
Alignment explanation
Indices: 3933696--3933729 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
3933686 TAAATTTTAA
*
3933696 AAAAATATTTAAACT
1 AAAAATAATTAAACT
*
3933711 AAAAATAATTAAATT
1 AAAAATAATTAAACT
3933726 AAAA
1 AAAA
3933730 TTCAAAGACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAAATAATTAAACT
Found at i:3934909 original size:12 final size:12
Alignment explanation
Indices: 3934883--3934927 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
3934873 AAGGACCTCA
*
3934883 CATCATCATCAT
1 CATCGTCATCAT
* *
3934895 CATTGTCATCGT
1 CATCGTCATCAT
*
3934907 CATCGTCACCAT
1 CATCGTCATCAT
3934919 CATCGTCAT
1 CATCGTCAT
3934928 TGTCGTCATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.24, C:0.33, G:0.09, T:0.33
Consensus pattern (12 bp):
CATCGTCATCAT
Found at i:3935223 original size:18 final size:18
Alignment explanation
Indices: 3935202--3935250 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
3935192 TTTTTTATAC
3935202 ATAATATTAATTTTTTTT
1 ATAATATTAATTTTTTTT
* *
3935220 ATAAT-TAAGACTTTTTTT
1 ATAATATTA-ATTTTTTTT
3935238 ATAATATTTAATT
1 ATAATA-TTAATT
3935251 AAGACTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
17 2 0.08
18 18 0.75
19 2 0.08
20 2 0.08
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
ATAATATTAATTTTTTTT
Found at i:3935272 original size:25 final size:25
Alignment explanation
Indices: 3935216--3935274 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
3935206 TATTAATTTT
* *
3935216 TTTTATAATTAAGACTTTTTTTATAA
1 TTTT-TAATTAAGACTTATTTGATAA
* *
3935242 TATTTAATTAAGACTTATTTGATAC
1 TTTTTAATTAAGACTTATTTGATAA
3935267 TTTTTAAT
1 TTTTTAAT
3935275 AGCATAGGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 25 0.89
26 3 0.11
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (25 bp):
TTTTTAATTAAGACTTATTTGATAA
Found at i:3943216 original size:46 final size:46
Alignment explanation
Indices: 3943159--3943252 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
3943149 GAAGAAAAAG
*
3943159 AAAAAAAATTAATGTGTACTGCCAATCTTTCAGGTGGCACCAGAGA
1 AAAAAAAATTAACGTGTACTGCCAATCTTTCAGGTGGCACCAGAGA
*
3943205 AAAAAAAATTAACGTGTACTGCCAATCTTTCAGGTGGCACCGGAGA
1 AAAAAAAATTAACGTGTACTGCCAATCTTTCAGGTGGCACCAGAGA
3943251 AA
1 AA
3943253 TTTAAAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.22
Consensus pattern (46 bp):
AAAAAAAATTAACGTGTACTGCCAATCTTTCAGGTGGCACCAGAGA
Found at i:3943635 original size:22 final size:23
Alignment explanation
Indices: 3943610--3943654 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
3943600 GGTTTTCAAT
*
3943610 TAAAA-AAAAGTAAAGA-AAAAAA
1 TAAAATAAAA-TAAAAACAAAAAA
3943632 TAAAATAAAATAAAAACAAAAAA
1 TAAAATAAAATAAAAACAAAAAA
3943655 AGTACAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.11
Consensus pattern (23 bp):
TAAAATAAAATAAAAACAAAAAA
Found at i:3943878 original size:47 final size:47
Alignment explanation
Indices: 3943820--3943924 Score: 149
Period size: 47 Copynumber: 2.2 Consensus size: 47
3943810 TTTTATTATC
* *
3943820 TATTTTCCATATATGTTATTTTTTTTCC-TTTCTCATATTTAATTCTG
1 TATTTTCCATATATGTTATTCTCTTTCCTTTTCT-ATATTTAATTCTG
* * *
3943867 TATTTTTCATATATGTTATTCTCTTTCCTTTTCTATATTTGATTCTT
1 TATTTTCCATATATGTTATTCTCTTTCCTTTTCTATATTTAATTCTG
3943914 TATTTTCCATA
1 TATTTTCCATA
3943925 AAATATTAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
47 46 0.90
48 5 0.10
ACGTcount: A:0.19, C:0.15, G:0.04, T:0.62
Consensus pattern (47 bp):
TATTTTCCATATATGTTATTCTCTTTCCTTTTCTATATTTAATTCTG
Found at i:3943904 original size:24 final size:24
Alignment explanation
Indices: 3943843--3943912 Score: 58
Period size: 23 Copynumber: 3.0 Consensus size: 24
3943833 TGTTATTTTT
*
3943843 TTTCC-TTTCTCATATTTAATTCTG
1 TTTCCTTTTCT-ATATTTAATTCTC
*
3943867 TAT--TTTTCATATATGTT-ATTCTC
1 TTTCCTTTTC-TATAT-TTAATTCTC
*
3943890 TTTCCTTTTCTATATTTGATTCT
1 TTTCCTTTTCTATATTTAATTCT
3943913 TTATTTTCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
23 17 0.46
24 15 0.41
25 5 0.14
ACGTcount: A:0.17, C:0.17, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTCCTTTTCTATATTTAATTCTC
Found at i:3943968 original size:84 final size:84
Alignment explanation
Indices: 3943867--3944038 Score: 263
Period size: 84 Copynumber: 2.0 Consensus size: 84
3943857 TTTAATTCTG
** * * * *
3943867 TATTTTTCATATATGTTATTCTCTTTCCTTTTCTATATTTGATTCTTTATTTTCCATAAAATATT
1 TATTTTTCATATATGTTATTCGATTTCCTTTCCTATATTTGATTCTCTATTTTCAACAAAATATT
3943932 AAATTCCCTTTCATATCTC
66 AAATTCCCTTTCATATCTC
*
3943951 TATTTTTCATATTTGTTATTCGATTTCCTTTCCTATATTTGATTCTCTATTTTCAACAAAATATT
1 TATTTTTCATATATGTTATTCGATTTCCTTTCCTATATTTGATTCTCTATTTTCAACAAAATATT
* *
3944016 CAATTCTCTTTCATATCTC
66 AAATTCCCTTTCATATCTC
3944035 TATT
1 TATT
3944039 GTTATTCTCT
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 79 1.00
ACGTcount: A:0.24, C:0.18, G:0.03, T:0.55
Consensus pattern (84 bp):
TATTTTTCATATATGTTATTCGATTTCCTTTCCTATATTTGATTCTCTATTTTCAACAAAATATT
AAATTCCCTTTCATATCTC
Found at i:3944299 original size:17 final size:17
Alignment explanation
Indices: 3944270--3944302 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3944260 AGTTGTTTCT
3944270 TTTCAACTTTTTTTTTG
1 TTTCAACTTTTTTTTTG
3944287 TTTC-ACTTGTTTTTTT
1 TTTCAACTT-TTTTTTT
3944303 TAATTCTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.12, G:0.06, T:0.73
Consensus pattern (17 bp):
TTTCAACTTTTTTTTTG
Found at i:3944477 original size:26 final size:26
Alignment explanation
Indices: 3944441--3944492 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3944431 TTTTCCTCTC
*
3944441 TGAATATATATTTTTAATGGGTATTT
1 TGAATATATATTTTTAACGGGTATTT
3944467 TGAATATATATTTTTAACGGGTATTT
1 TGAATATATATTTTTAACGGGTATTT
3944493 CGAAAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.52
Consensus pattern (26 bp):
TGAATATATATTTTTAACGGGTATTT
Found at i:3948566 original size:43 final size:43
Alignment explanation
Indices: 3948511--3948608 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
3948501 AAAAGGGGAC
* * * *
3948511 ACACACCTGTGTGGCCTGGCCGTGTGTCTCATACGGCCAACAG
1 ACACACCCGTGTGGCCCGACCGTGTGTCTCACACGGCCAACAG
* *
3948554 ACACGCCCGTGTGGCCCGACCGTGTGTCTCACATGGCCAACAG
1 ACACACCCGTGTGGCCCGACCGTGTGTCTCACACGGCCAACAG
*
3948597 ATACACCCGTGT
1 ACACACCCGTGT
3948609 CACAGGACAT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.19, C:0.35, G:0.27, T:0.19
Consensus pattern (43 bp):
ACACACCCGTGTGGCCCGACCGTGTGTCTCACACGGCCAACAG
Found at i:3954003 original size:48 final size:47
Alignment explanation
Indices: 3953951--3954073 Score: 113
Period size: 48 Copynumber: 2.6 Consensus size: 47
3953941 CTAAGTGCCA
* * * *
3953951 ATATCATTGCCCGAAGCCAACTCAATA-AATCTTACACCCGAAGTGTCG
1 ATATCATAGCCCGAAGCCAAATCAA-AGAA-CTCACACCCGAAGTGACG
* * * *
3953999 ATATCATAACCCAAAGCCAAATCAAAGTAACTCGCACCCTAAGTGACG
1 ATATCATAGCCCGAAGCCAAATCAAAG-AACTCACACCCGAAGTGACG
* * *
3954047 ATATCATGGCCCGAAGCTAAATTAAAG
1 ATATCATAGCCCGAAGCCAAATCAAAG
3954074 TAACCCCTAA
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
47 1 0.02
48 57 0.95
49 2 0.03
ACGTcount: A:0.38, C:0.27, G:0.15, T:0.20
Consensus pattern (47 bp):
ATATCATAGCCCGAAGCCAAATCAAAGAACTCACACCCGAAGTGACG
Found at i:3954074 original size:48 final size:48
Alignment explanation
Indices: 3953985--3954077 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
3953975 ATAAATCTTA
*
3953985 CACCCGAAGTGTCGATATCATAACCCAAAGCCAAATCAAAGTAACTCG
1 CACCCGAAGTGACGATATCATAACCCAAAGCCAAATCAAAGTAACTCG
* ** * * *
3954033 CACCCTAAGTGACGATATCATGGCCCGAAGCTAAATTAAAGTAAC
1 CACCCGAAGTGACGATATCATAACCCAAAGCCAAATCAAAGTAAC
3954078 CCCTAATGAC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.39, C:0.27, G:0.16, T:0.18
Consensus pattern (48 bp):
CACCCGAAGTGACGATATCATAACCCAAAGCCAAATCAAAGTAACTCG
Found at i:3960090 original size:21 final size:21
Alignment explanation
Indices: 3960066--3960118 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
3960056 ACCTTAATAG
3960066 TAATTTATTT-TACTAATAAAT
1 TAATTTATTTCT-CTAATAAAT
* * *
3960087 TAATGTGTTTCTCTTATAAAT
1 TAATTTATTTCTCTAATAAAT
3960108 TAATTTCATTT
1 TAATTT-ATTT
3960119 ATTTTTTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.55
Consensus pattern (21 bp):
TAATTTATTTCTCTAATAAAT
Found at i:3961637 original size:37 final size:37
Alignment explanation
Indices: 3961564--3961638 Score: 89
Period size: 37 Copynumber: 2.0 Consensus size: 37
3961554 ATCCAAAAAA
* * *
3961564 AAAATTATGAAAAGTTAAAAGACATATATATATGTAC
1 AAAATTATGAAAAGTTAAAAAAAACATATATATGTAC
* *
3961601 AAAATTATGAAAA-TATAAAAAAAACATATGTGTGTAC
1 AAAATTATGAAAAGT-TAAAAAAAACATATATATGTAC
3961638 A
1 A
3961639 CATGAATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 1 0.03
37 31 0.97
ACGTcount: A:0.56, C:0.05, G:0.11, T:0.28
Consensus pattern (37 bp):
AAAATTATGAAAAGTTAAAAAAAACATATATATGTAC
Found at i:3962017 original size:3 final size:3
Alignment explanation
Indices: 3962001--3962059 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
3961991 GTATGTAAGT
* *
3962001 ATA ATA A-A AAA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ACT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
3962045 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
3962060 ACTAAAAACT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
2 5 0.11
3 41 0.87
4 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:3963699 original size:132 final size:132
Alignment explanation
Indices: 3963563--3964585 Score: 1444
Period size: 132 Copynumber: 7.8 Consensus size: 132
3963553 CTGCCATCTT
* * * * * *
3963563 CGATCTACTCCACCACTAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTATCAATAT
3963628 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
66 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
3963693 TG
131 TG
*
3963695 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCACTTCCTATCAATAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTATCAATAT
*
3963760 AGGAAGATAGGACCTGCTATCTTCGATCTACCTCACGCCAATACATGAAGACAAGATCTGCTTTC
66 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
3963825 TG
131 TG
*
3963827 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTATCAATAT
*
3963892 AAGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
66 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
3963957 TG
131 TG
* * * *
3963959 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTATCAATAT
* * * *
3964024 AGAAAGATAGGACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTC
66 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
3964089 TG
131 TG
* *
3964091 CGATCTACTTCGCCACCAATATGGGAAAACAAGATCTGCATCTTGGATCCACTTCCTATCAATAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTATCAATAT
* * *
3964156 AGAAAGATAGGACCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTC
66 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
*
3964221 TT
131 TG
*
3964223 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTATCAATAT
3964288 AGGAAGATAGGACCTGCTA-CTTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT
66 AGGAAGATAGGACCTGCTATC-TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT
*
3964352 CTT
130 CTG
* * *
3964355 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATA
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTATCAATA
* * * * * * * * * * ** * *
3964420 TGGGAAGACAAGATCTGC-ATCTTCGATCCATTTC-CTACCAATATAGGAAAACCGGATCAGCTA
65 TAGGAAGATAGGACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTT
*
3964483 TCTT
129 TCTG
* * * *** * * * *
3964487 CGACCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTATCAAT
* * * *
3964551 ATGGGAAGACAAGATCTGC-ATCTTCGATCTACTTC
64 ATAGGAAGATAGGACCTGCTATCTTCGATCTACTTC
3964586 GCCACCAATA
Statistics
Matches: 822, Mismatches: 64, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
131 24 0.03
132 775 0.94
133 23 0.03
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (132 bp):
CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTATCAATAT
AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
TG
Found at i:3964401 original size:176 final size:175
Alignment explanation
Indices: 3963641--3964717 Score: 1144
Period size: 176 Copynumber: 6.1 Consensus size: 175
3963631 AAGATAGGAC
* * * * * * *
3963641 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTTTCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGATCTACTTC
* * * *
3963706 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCACTTCCTATCAATATAGGAAGATAGG
65 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAAACAGG
* *
3963771 ACCTGCTATCTTCGATCTACCTCACGCCAATACATGAAGACAAGAT
130 ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
* * * *
3963817 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTC
1 CTGCTTTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTC
* * ** * * * * * * * *
3963882 -CTATCAATATAAGAAGATAGGACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACA
65 GCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAAACA
* * * * * ***
3963945 AGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
128 GGATCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGAT
* * * * * * * * * * * *
3963994 CTGC-GTCGTCGATCCACTTCCAATCATTATAGAAAGATAGGACCTGTTATCTTTGATCTACTTC
1 CTGCTTTCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTG-CATCTTCGATCTACTTC
* * *** * * * * * *
3964058 -ACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCACCAATATGGGAAAACA
65 GCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAAACA
* * * ** * * * *
3964122 AGATCTGC-ATCTTGGATCCACTTC-CTATCAATATA-GAAAGATAGGAC
128 GGATCTGCTATCTTCGATCTACTTCAC-GCCAATACATG-AAGACAAGAT
** * * * * * *
3964169 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTC
1 CTGCTTTCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGATCTACTTC
* *
3964234 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAAACAGG
*
3964299 ACCTGCTA-CTTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
130 ATCTGCTATC-TTCGATCTACTTCACGCCAATACATGAAGACAAGAT
*
3964345 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTC
1 CTGCTTTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTC
* *
3964410 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATATAGGAAAACCGG
65 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAAACAGG
* *
3964475 ATCAGCTATCTTCGACCTACTTCACGCCAATACATGAAGACAAGAT
130 ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
*
3964521 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTC
1 CTGCTTTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTC
* *
3964586 GCCACCAATATGGGAAGACAATATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAAACCGG
65 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAAACAGG
* * *
3964651 ATCAGCTATCTTCGACCTACTTCACGTCAATACATGAAGACAAGAT
130 ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
*
3964697 CTACTTTCTTCGATCTACTTC
1 CTGCTTTCTTCGATCTACTTC
3964718 TTGTCCCGGG
Statistics
Matches: 745, Mismatches: 139, Indels: 34
0.81 0.15 0.04
Matches are distributed among these distances:
174 2 0.00
175 78 0.10
176 555 0.74
177 110 0.15
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (175 bp):
CTGCTTTCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCG
CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAAACAGGA
TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
Found at i:3964486 original size:44 final size:45
Alignment explanation
Indices: 3963551--3964717 Score: 975
Period size: 44 Copynumber: 26.5 Consensus size: 45
3963541 GGAAGGTAAA
* * * * * *
3963551 ATCTGCCATCTTCGATCTACTCCACCACTAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * *
3963596 ATCTG-TATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * *
3963639 ACCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * *
3963683 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * *
3963728 ATCTGC-ATCTTCGACCCACTTC-CTATCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * *
3963771 ACCTGCTATCTTCGATCTACCTC-ACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * *
3963815 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * * *
3963860 ATCTGC-ATCTTGGATCCACTTC-CTATCAATATAAGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * *
3963903 ACCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * *
3963947 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * * * * *
3963992 ATCTGC-GTCGTCGATCCACTTC-CAATCATTATAGAAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * * *
3964035 ACCTGTTATCTTTGATCTACTTC-ACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * *
3964079 ATCTACTTTCTGCGATCTACTTCGCCACCAATATGGGAAAACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * * *
3964124 ATCTGC-ATCTTGGATCCACTTC-CTATCAATATAGAAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * *
3964167 ACCTGCTACCTTCGATCTACTTC-ACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * *
3964211 ATTTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * *
3964256 ATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * *
3964299 ACCTGCTA-CTTTCGATCTACTTC-ACGCCAATACATGAAGACAAG
1 ATCTGCTATC-TTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* *
3964343 ATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
*
3964388 ATCTGC-ATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * **
3964432 ATCTGC-ATCTTCGATCCATTTC-CTACCAATATAGGAAAACCGG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * * * *
3964475 ATCAGCTATCTTCGACCTACTTC-ACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* *
3964519 ATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* *
3964564 ATCTGC-ATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * **
3964608 ATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAAACCGG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* * * ** * *
3964651 ATCAGCTATCTTCGACCTACTTC-ACGTCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
* *
3964695 ATCTACTTTCTTCGATCTACTTC
1 ATCTGCTATCTTCGATCTACTTC
3964718 TTGTCCCGGG
Statistics
Matches: 867, Mismatches: 238, Indels: 35
0.76 0.21 0.03
Matches are distributed among these distances:
43 160 0.18
44 550 0.63
45 157 0.18
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAG
Found at i:3972951 original size:13 final size:13
Alignment explanation
Indices: 3972935--3972959 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3972925 ATGTATATAA
3972935 TATATATATAAAC
1 TATATATATAAAC
3972948 TATATATATAAA
1 TATATATATAAA
3972960 AAAAATATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:3973081 original size:3 final size:3
Alignment explanation
Indices: 3973065--3973126 Score: 67
Period size: 3 Copynumber: 21.3 Consensus size: 3
3973055 GTATGTAAGT
* *
3973065 ATA ATA A-A AAA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ACT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
3973112 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
3973127 ACTAAAAACT
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
2 5 0.10
3 44 0.88
4 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:3980867 original size:96 final size:96
Alignment explanation
Indices: 3980751--3980944 Score: 372
Period size: 96 Copynumber: 2.0 Consensus size: 96
3980741 AAATGAAATA
3980751 AATTGAAATGCATTAAACTAAAGCTTAAAGAGTCTTGAAAACAAAGTATAGGGACTAGAAAT-TG
1 AATTGAAATGCATTAAACTAAAGCTTAAAGAGTCTTGAAAACAAAGTATAGGGACTAGAAATGT-
3980815 AAATAAACCTTAACTATAGTGCTAACTAACTT
65 AAATAAACCTTAACTATAGTGCTAACTAACTT
3980847 AATTGAAATGCATTAAACTAAAGCTTAAAGAGTCTTGAAAACAAAGTATAGGGACTAGAAATGTA
1 AATTGAAATGCATTAAACTAAAGCTTAAAGAGTCTTGAAAACAAAGTATAGGGACTAGAAATGTA
3980912 AATAAACCTTAACTATAGTGCTAACTAACTT
66 AATAAACCTTAACTATAGTGCTAACTAACTT
3980943 AA
1 AA
3980945 ATAAATAAAC
Statistics
Matches: 97, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
96 96 0.99
97 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.27
Consensus pattern (96 bp):
AATTGAAATGCATTAAACTAAAGCTTAAAGAGTCTTGAAAACAAAGTATAGGGACTAGAAATGTA
AATAAACCTTAACTATAGTGCTAACTAACTT
Found at i:3980957 original size:36 final size:36
Alignment explanation
Indices: 3980910--3980990 Score: 153
Period size: 36 Copynumber: 2.2 Consensus size: 36
3980900 ACTAGAAATG
3980910 TAAATAAACCTTAACTATAGTGCTAACTAACTTAAA
1 TAAATAAACCTTAACTATAGTGCTAACTAACTTAAA
3980946 TAAATAAACCTTAACTATAGTGCTAACTAACTTAAA
1 TAAATAAACCTTAACTATAGTGCTAACTAACTTAAA
3980982 TAACATAAA
1 TAA-ATAAA
3980991 AAAATAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 39 0.89
37 5 0.11
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.30
Consensus pattern (36 bp):
TAAATAAACCTTAACTATAGTGCTAACTAACTTAAA
Found at i:3986012 original size:18 final size:18
Alignment explanation
Indices: 3985974--3986012 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
3985964 AGCAATTCAT
*
3985974 AATTGATAAATACTTTTA
1 AATTGATAAATACTTTAA
3985992 AATTGATCAAATA-TTTAA
1 AATTGAT-AAATACTTTAA
3986010 AAT
1 AAT
3986013 ATTGATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (18 bp):
AATTGATAAATACTTTAA
Found at i:3988955 original size:131 final size:131
Alignment explanation
Indices: 3988720--3989231 Score: 496
Period size: 131 Copynumber: 3.9 Consensus size: 131
3988710 TCACAATTAT
* * * * * *
3988720 TAAAAATCCC-TT-AAACGAAGGCGATACGCGATATTTGGTAATTCGCGGAATCGTACCCTAACG
1 TAAAAAACCCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCG-GGAATCATACCCTAACG
*
3988783 TGCTGGGTTGCAATTTCTCGTTTGCTT-AAAATAATCAAATATCCCTTCAAAATTTCACTCATGT
65 TGCTGGGTTGCAATTTCTCGTTTG-TTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGT
3988847 CTTC
129 -TTC
* * * *
3988851 T-AAAAACCCTTTAAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGT
1 TAAAAAACCCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGGGAATCATACCCTAACGT
* ** * * *** *
3988915 GTTGGGTTGTGATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTAGGTTTTCACTCGTGTTT
66 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTTT
*
3988980 A
131 C
* * * * * *
3988981 TCAAAAA-CCTTCCAAAACAAAGACAATACTCGGTGTTTGATAATTCGGGAATCATGCCCTAACG
1 TAAAAAACCCTT-TAAAACGAAGGCAATACTCGATGTTTGATAATTCGGGAATCATACCCTAACG
* ** * * * * * * *
3989045 TGTTGGGTTGTGATTTCTTGTTTTTTCAAAACAATCGAAGATTCCTTCGAAATTTCACTCACGTT
65 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATG-T
3989110 TTC
129 TTC
* * * ** *
3989113 TAAAAAACCCTTTAAAATGAAGGCAATATTCGATGCTTGGCAATTCGGGGAAT-AGTACCCTATC
1 TAAAAAACCCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTC-GGGAATCA-TACCCTAAC
* * * *
3989177 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCTAATATCTCTTCAGAATT
64 GTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATT
3989232 CCACACGTAT
Statistics
Matches: 309, Mismatches: 63, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
130 16 0.05
131 171 0.55
132 63 0.20
133 59 0.19
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (131 bp):
TAAAAAACCCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGGGAATCATACCCTAACGT
GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTTT
C
Found at i:3993767 original size:23 final size:25
Alignment explanation
Indices: 3993741--3993787 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
3993731 TATCATTCAT
*
3993741 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
3993764 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
3993788 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:3994118 original size:46 final size:46
Alignment explanation
Indices: 3994048--3994311 Score: 325
Period size: 46 Copynumber: 6.0 Consensus size: 46
3994038 TTTGACGCGA
* * * * * *
3994048 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
3994094 TGCCATGGTATCTTCCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
3994140 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
3994186 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
3994232 TGCCATGGTATCTTTCAACCATGGTCTT----A---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
3994268 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
3994312 AGAGCACACT
Statistics
Matches: 192, Mismatches: 15, Indels: 22
0.84 0.07 0.10
Matches are distributed among these distances:
36 33 0.17
37 1 0.01
39 1 0.01
40 1 0.01
42 1 0.01
43 1 0.01
45 5 0.03
46 149 0.78
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:3994274 original size:36 final size:36
Alignment explanation
Indices: 3994227--3994300 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
3994217 CATTTCATAT
3994227 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
3994263 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
3994299 CA
1 CA
3994301 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (36 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
Found at i:3997172 original size:17 final size:19
Alignment explanation
Indices: 3997147--3997183 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
3997137 AGTGATGATG
*
3997147 ATAATAATA-TGAAA-AAT
1 ATAACAATAGTGAAATAAT
3997164 ATAACAATAGTGAAATAAT
1 ATAACAATAGTGAAATAAT
3997183 A
1 A
3997184 ATATAGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (19 bp):
ATAACAATAGTGAAATAAT
Found at i:3997279 original size:3 final size:3
Alignment explanation
Indices: 3997261--3997325 Score: 53
Period size: 3 Copynumber: 21.3 Consensus size: 3
3997251 TATAGATGAA
* * *
3997261 AAT AA- AAT AGT AAT AAT AAT ACGAT AGT AAT AAT GAT AAT AA- AATT
1 AAT AAT AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AAT AAT AA-T
*
3997307 AGT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
3997326 TGTTAAATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
2 4 0.08
3 41 0.84
4 1 0.02
5 3 0.06
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:3997375 original size:3 final size:3
Alignment explanation
Indices: 3997367--3997574 Score: 96
Period size: 3 Copynumber: 66.7 Consensus size: 3
3997357 TTAAAAATGT
* * *
3997367 TAA TAA TAA TAA TGA TAA TAA TAA TGA TAA TAA TGA TAA TAA TAA TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * * * * *
3997416 TCGA TAA TAAA TAA TAGA -AG GAA TAA AAA TAA TAG TAA TAA TAA GAG
1 T-AA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * ** * *
3997463 TAT TAA CAA TAG TAA TAA TAA CGA TAA T-G TAAA TAC TAA TATA TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A
* * * * * *
3997510 TTAA AAA TAA TAA TAG TAA TAG TAA TAG TAA TAA TGA TAA CAA TAA
1 -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
3997556 TACA TTAA TGA TAA TAA TA
1 TA-A -TAA TAA TAA TAA TA
3997575 TATGTTAATA
Statistics
Matches: 147, Mismatches: 47, Indels: 22
0.68 0.22 0.10
Matches are distributed among these distances:
2 1 0.01
3 126 0.86
4 16 0.11
5 4 0.03
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:3997668 original size:3 final size:3
Alignment explanation
Indices: 3997662--3997765 Score: 52
Period size: 3 Copynumber: 34.0 Consensus size: 3
3997652 AAGATAGTAG
* * * *
3997662 TAA TAA TAA TAA TAA TAA TAA TACA TTAA GTTA CAA TAG TAA -AG TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A -TAA -TAA TAA TAA TAA TAA TAA
* * * * * *
3997709 TAA CAG TGA TAA TGA TAA T-A TAT TAGA TAA TAA TAG TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
3997753 TAA GTAA TAA TAA
1 TAA -TAA TAA TAA
3997766 CAGATTAAAT
Statistics
Matches: 73, Mismatches: 21, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
2 5 0.07
3 57 0.78
4 9 0.12
5 2 0.03
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:4002005 original size:22 final size:23
Alignment explanation
Indices: 4001980--4002023 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
4001970 AGTTAAAGGG
4001980 TTACCACACATTT-CCAAAAATT
1 TTACCACACATTTCCCAAAAATT
* **
4002002 TTACTACATTTTTCCCAAAAAT
1 TTACCACACATTTCCCAAAAAT
4002024 CCAATGTGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (23 bp):
TTACCACACATTTCCCAAAAATT
Found at i:4003000 original size:8 final size:7
Alignment explanation
Indices: 4002981--4003023 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
4002971 CAAATAATTT
4002981 TAAAAAA
1 TAAAAAA
*
4002988 TAAAAAC
1 TAAAAAA
4002995 T-AAAAA
1 TAAAAAA
4003001 TAAAAAAA
1 T-AAAAAA
4003009 TAGAAAAA
1 TA-AAAAA
4003017 TAAAAAA
1 TAAAAAA
4003024 ATATATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
6 5 0.16
7 13 0.42
8 13 0.42
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (7 bp):
TAAAAAA
Found at i:4003015 original size:16 final size:16
Alignment explanation
Indices: 4002996--4003026 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
4002986 AATAAAAACT
4002996 AAAAATAAAAAAATAG
1 AAAAATAAAAAAATAG
4003012 AAAAATAAAAAAATA
1 AAAAATAAAAAAATA
4003027 TATAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (16 bp):
AAAAATAAAAAAATAG
Found at i:4003024 original size:8 final size:8
Alignment explanation
Indices: 4002996--4003026 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
4002986 AATAAAAACT
4002996 AAAAATAA
1 AAAAATAA
*
4003004 AAAAATAG
1 AAAAATAA
4003012 AAAAATAA
1 AAAAATAA
4003020 AAAAATA
1 AAAAATA
4003027 TATAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:4014648 original size:13 final size:12
Alignment explanation
Indices: 4014599--4014654 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
4014589 TTTAACAATA
4014599 CTTTTGAAAA-TG
1 CTTTT-AAAAGTG
4014611 CTTTTAAAATGTG
1 CTTTTAAAA-GTG
*
4014624 CTTTAAACAAGTG
1 CTTTTAA-AAGTG
*
4014637 CTTTTAAGAAGTA
1 CTTTTAA-AAGTG
4014650 CTTTT
1 CTTTT
4014655 TGAAAATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
11 4 0.11
12 5 0.14
13 26 0.70
14 2 0.05
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (12 bp):
CTTTTAAAAGTG
Found at i:4026379 original size:46 final size:48
Alignment explanation
Indices: 4026275--4026394 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
4026265 TGTCTTCGAC
** * *
4026275 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
4026323 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
4026369 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
4026395 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:4031407 original size:46 final size:48
Alignment explanation
Indices: 4031303--4031422 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
4031293 CGTCTTCGAC
** * *
4031303 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
4031351 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGTCATATA-AT-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
4031397 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
4031423 ATGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 2 0.03
48 34 0.54
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:4036056 original size:15 final size:15
Alignment explanation
Indices: 4036026--4036057 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
4036016 TTAGATACGC
4036026 AATTAAATTTTAAAA
1 AATTAAATTTTAAAA
4036041 AATTACAATTTTAAAA
1 AATTA-AATTTTAAAA
4036057 A
1 A
4036058 GTTGTCATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
AATTAAATTTTAAAA
Found at i:4036855 original size:26 final size:27
Alignment explanation
Indices: 4036817--4036869 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
4036807 TTTAAAATCT
* *
4036817 AAAAATTAGAAGA-ATTAAATTTTTAAA
1 AAAAAGTAGAAGAGACT-AATTTTTAAA
4036844 AAAAAGTA-AAGAGACTAATTTTTAAA
1 AAAAAGTAGAAGAGACTAATTTTTAAA
4036870 TTTACAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAAAGTAGAAGAGACTAATTTTTAAA
Found at i:4037512 original size:31 final size:31
Alignment explanation
Indices: 4037477--4037547 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
4037467 AATCTTTGTA
*
4037477 TTTTAATTTAATTAAATTTAGTCCTTATACT
1 TTTTAATTTAATCAAATTTAGTCCTTATACT
* * * * *
4037508 TTTTAAATTAGTCAACTTTAGTCCTTGTGCT
1 TTTTAATTTAATCAAATTTAGTCCTTATACT
*
4037539 CTTTAATTT
1 TTTTAATTT
4037548 TTAAAATTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.54
Consensus pattern (31 bp):
TTTTAATTTAATCAAATTTAGTCCTTATACT
Found at i:4058958 original size:24 final size:24
Alignment explanation
Indices: 4058931--4058982 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
4058921 TTAGTAAGTC
*
4058931 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
4058955 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
4058979 AAAT
1 AAAT
4058983 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:4061429 original size:18 final size:18
Alignment explanation
Indices: 4061391--4061429 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
4061381 AAATTGAGAT
* * *
4061391 TTTTATTATTTTTTATTA
1 TTTTATAATTTTTAATAA
4061409 TTTTATAATTTTTAATAA
1 TTTTATAATTTTTAATAA
4061427 TTT
1 TTT
4061430 ATTTAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTATAATTTTTAATAA
Found at i:4065624 original size:24 final size:26
Alignment explanation
Indices: 4065590--4065664 Score: 84
Period size: 24 Copynumber: 3.0 Consensus size: 26
4065580 CAAAGTCCTG
*
4065590 ATTCATAGCTCGTGTGAGCAATATAT
1 ATTCACAGCTCGTGTGAGCAATATAT
* * *
4065616 -TTCA-AGCTCATGTTAGTAATA-AT
1 ATTCACAGCTCGTGTGAGCAATATAT
*
4065639 ATTCACAGCTCGTGTGAGCAAAATAT
1 ATTCACAGCTCGTGTGAGCAATATAT
4065665 GTCATGTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
23 2 0.05
24 18 0.46
25 17 0.44
26 2 0.05
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Consensus pattern (26 bp):
ATTCACAGCTCGTGTGAGCAATATAT
Found at i:4065885 original size:19 final size:19
Alignment explanation
Indices: 4065861--4065897 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
4065851 ACGTGTCCCC
4065861 TATTTTT-TAAAAATTTTCA
1 TATTTTTCT-AAAATTTTCA
4065880 TATTTTTCTAAAATTTTC
1 TATTTTTCTAAAATTTTC
4065898 TGACTTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTTTCTAAAATTTTCA
Found at i:4086394 original size:31 final size:31
Alignment explanation
Indices: 4086311--4086401 Score: 89
Period size: 31 Copynumber: 2.9 Consensus size: 31
4086301 AAAAAACTTG
* **
4086311 TTTTTATTTTTA-TTTAAGGAA-ATTTTTATT
1 TTTTTATTTTTATTTTAA-AAATATTTTTACA
*
4086341 TTTTTCGTTTTT-TTTATAAAAAATATTTTTACA
1 TTTTT-ATTTTTATTT-T-AAAAATATTTTTACA
4086374 TTTTTATTTTTATTTTAAAAATATTTTT
1 TTTTTATTTTTATTTTAAAAATATTTTT
4086402 GTAATTGTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
30 5 0.10
31 19 0.38
32 9 0.18
33 17 0.34
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (31 bp):
TTTTTATTTTTATTTTAAAAATATTTTTACA
Found at i:4093220 original size:29 final size:29
Alignment explanation
Indices: 4093186--4093246 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
4093176 CATTAAATAT
* *
4093186 CATTTCAAACACAAGTGATTAAAATGTAA
1 CATTTCAAACACAAATAATTAAAATGTAA
* *
4093215 CATTTCAAATATAAATAATTAAAATGTAA
1 CATTTCAAACACAAATAATTAAAATGTAA
4093244 CAT
1 CAT
4093247 AATGTAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (29 bp):
CATTTCAAACACAAATAATTAAAATGTAA
Found at i:4096785 original size:31 final size:31
Alignment explanation
Indices: 4096750--4096850 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
4096740 TAAGGTTCAA
*
4096750 TGACTAAAATGTTACAACATGATAATATAAG
1 TGACTAAAATGTTACAATATGATAATATAAG
4096781 TGACTAAAATGTTACAATATGATAATATAAG
1 TGACTAAAATGTTACAATATGATAATATAAG
* * *
4096812 TGACTAAAATGTAAC-ATTTCA-AATATAAG
1 TGACTAAAATGTTACAATATGATAATATAAG
4096841 TGACTAAAAT
1 TGACTAAAAT
4096851 ATAATTTGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
29 18 0.27
30 4 0.06
31 44 0.67
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.31
Consensus pattern (31 bp):
TGACTAAAATGTTACAATATGATAATATAAG
Found at i:4105150 original size:8 final size:8
Alignment explanation
Indices: 4105139--4105171 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
4105129 GATAAAATAA
4105139 AAAAAAAG
1 AAAAAAAG
4105147 AAAAAAA-
1 AAAAAAAG
*
4105154 AAGAAAAG
1 AAAAAAAG
4105162 AAAAAAAG
1 AAAAAAAG
4105170 AA
1 AA
4105172 TCCAATGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:4105150 original size:10 final size:10
Alignment explanation
Indices: 4105132--4105166 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
4105122 CAAAAGAGAT
*
4105132 AAAATAAAAA
1 AAAAGAAAAA
4105142 AAAAGAAAAA
1 AAAAGAAAAA
4105152 AAAAGAAAAGA
1 AAAAGAAAA-A
4105163 AAAA
1 AAAA
4105167 AAGAATCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 18 0.78
11 5 0.22
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.03
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:4105150 original size:15 final size:15
Alignment explanation
Indices: 4105132--4105168 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
4105122 CAAAAGAGAT
4105132 AAAATAAAAA-AAAAG
1 AAAA-AAAAAGAAAAG
4105147 AAAAAAAAAGAAAAG
1 AAAAAAAAAGAAAAG
4105162 AAAAAAA
1 AAAAAAA
4105169 GAATCCAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.89, C:0.00, G:0.08, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAGAAAAG
Found at i:4110424 original size:2 final size:2
Alignment explanation
Indices: 4110419--4110463 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
4110409 ACACATGCAT
4110419 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4110461 AG A
1 AG A
4110464 TCCGTACTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4113395 original size:72 final size:72
Alignment explanation
Indices: 4113274--4113461 Score: 360
Period size: 72 Copynumber: 2.6 Consensus size: 72
4113264 GCTTACAACT
*
4113274 TAAC-AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCT
1 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCT
4113338 ACTACAC
66 ACTACAC
4113345 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCT
1 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCT
4113410 ACTACAC
66 ACTACAC
4113417 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
4113462 AATAATAATA
Statistics
Matches: 115, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
71 4 0.03
72 111 0.97
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (72 bp):
TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCT
ACTACAC
Found at i:4113470 original size:3 final size:3
Alignment explanation
Indices: 4113462--4113499 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
4113452 ATTACATCCA
4113462 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4113500 AACATGTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:4117835 original size:72 final size:72
Alignment explanation
Indices: 4117714--4117901 Score: 360
Period size: 72 Copynumber: 2.6 Consensus size: 72
4117704 GCTTACAACT
*
4117714 TAAC-AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCT
1 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCT
4117778 ACTACAC
66 ACTACAC
4117785 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCT
1 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCT
4117850 ACTACAC
66 ACTACAC
4117857 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
4117902 AATAATAATA
Statistics
Matches: 115, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
71 4 0.03
72 111 0.97
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (72 bp):
TAACAAACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCT
ACTACAC
Found at i:4117910 original size:3 final size:3
Alignment explanation
Indices: 4117902--4117942 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
4117892 ATTACATCCA
4117902 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4117943 AACATGTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:4126139 original size:4 final size:4
Alignment explanation
Indices: 4126129--4126162 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
4126119 TCATGGTTCC
* *
4126129 TTGT TTTT TTTT TTGT TTGT TTGT TTGT TTGT TT
1 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TT
4126163 TTTATAAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (4 bp):
TTGT
Found at i:4135850 original size:38 final size:39
Alignment explanation
Indices: 4135786--4135896 Score: 110
Period size: 37 Copynumber: 2.9 Consensus size: 39
4135776 AAAGGCATTT
*
4135786 TTAAG-AATAT-AAAGAATATATATAAGTATGTATATG-A
1 TTAAGAAATATGAAA-AATATATATAAGTATGTATAAGAA
* *
4135823 -TATA-AAATATGCATAAATATATGTAAGTA--TATAAGAA
1 TTA-AGAAATATG-AAAAATATATATAAGTATGTATAAGAA
*
4135860 TTAAGAAATATGAAAAATATATTTAAGTATGTATAAG
1 TTAAGAAATATGAAAAATATATATAAGTATGTATAAG
4135897 TACGTATATC
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
36 7 0.12
37 23 0.38
38 22 0.37
39 8 0.13
ACGTcount: A:0.52, C:0.01, G:0.13, T:0.34
Consensus pattern (39 bp):
TTAAGAAATATGAAAAATATATATAAGTATGTATAAGAA
Found at i:4138509 original size:12 final size:12
Alignment explanation
Indices: 4138488--4138521 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
4138478 TATATATTTT
*
4138488 AAAATTATATAA
1 AAAATAATATAA
4138500 AAAATAATATAA
1 AAAATAATATAA
*
4138512 AAATTAATAT
1 AAAATAATAT
4138522 GGGCAGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:4139503 original size:10 final size:10
Alignment explanation
Indices: 4139446--4139513 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 10
4139436 TTTAAAATTT
4139446 AAAAATTATTA
1 AAAAATTA-TA
*
4139457 AAAGAATCAT-
1 AAA-AATTATA
4139467 AAAAATTATA
1 AAAAATTATA
4139477 GACAAAATTTATGA
1 -A-AAAA-TTAT-A
*
4139491 AAAAGTTATA
1 AAAAATTATA
4139501 AAAAATT-TA
1 AAAAATTATA
4139510 AAAA
1 AAAA
4139514 TATATTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
9 11 0.23
10 10 0.21
11 9 0.19
12 11 0.23
13 5 0.11
14 1 0.02
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:4139505 original size:22 final size:23
Alignment explanation
Indices: 4139467--4139509 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
4139457 AAAGAATCAT
4139467 AAAAATTATAGACAAAATTTATG
1 AAAAATTATAGACAAAATTTATG
4139490 AAAAAGTTATA-A-AAAATTTA
1 AAAAA-TTATAGACAAAATTTA
4139510 AAAATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.42
23 6 0.32
24 5 0.26
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.30
Consensus pattern (23 bp):
AAAAATTATAGACAAAATTTATG
Found at i:4139664 original size:21 final size:22
Alignment explanation
Indices: 4139640--4139683 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
4139630 TTTTTATAAA
4139640 TTTAAA-TTT-TTTATAACTTTT
1 TTTAAACTTTATTTATAA-TTTT
4139661 TTTAAACTTTATTTATAATTTT
1 TTTAAACTTTATTTATAATTTT
4139683 T
1 T
4139684 ATGACATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.29
22 8 0.38
23 7 0.33
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTAAACTTTATTTATAATTTT
Found at i:4141895 original size:21 final size:21
Alignment explanation
Indices: 4141871--4141911 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4141861 TTTAGAAAAG
* *
4141871 TTTTAACATTCTTTATATATT
1 TTTTAAAATTCTTTAAATATT
*
4141892 TTTTAAAATTTTTTAAATAT
1 TTTTAAAATTCTTTAAATAT
4141912 AAATTTTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTAAAATTCTTTAAATATT
Found at i:4141917 original size:25 final size:26
Alignment explanation
Indices: 4141884--4141945 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 26
4141874 TAACATTCTT
* **
4141884 TATATATTTTTTAAAATTTT-TTAAA
1 TATAAATTTTTTAAAATTTTAACAAA
4141909 TATAAA--TTTTAAAATTTTAACAAA
1 TATAAATTTTTTAAAATTTTAACAAA
4141933 TATTAAATTTTTT
1 TA-TAAATTTTTT
4141946 TTTAATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 12 0.40
24 5 0.17
25 9 0.30
27 4 0.13
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (26 bp):
TATAAATTTTTTAAAATTTTAACAAA
Found at i:4141933 original size:24 final size:24
Alignment explanation
Indices: 4141892--4141943 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
4141882 TTTATATATT
**
4141892 TTTTAAAATTTTTTAAATA-TAAA
1 TTTTAAAATTTTACAAATATTAAA
4141915 TTTTAAAATTTTAACAAATATTAAA
1 TTTTAAAATTTT-ACAAATATTAAA
4141940 TTTT
1 TTTT
4141944 TTTTTAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 12 0.48
24 5 0.20
25 8 0.32
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTTAAAATTTTACAAATATTAAA
Found at i:4144503 original size:21 final size:23
Alignment explanation
Indices: 4144452--4144503 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
4144442 TATGTTAAGT
*
4144452 TATTT-TTTCGTGTATTTATATA
1 TATTTATTTCGTGTATTAATATA
*
4144474 TATTAATTTCGTG-ATTAATA-A
1 TATTTATTTCGTGTATTAATATA
4144495 TATTTATTT
1 TATTTATTT
4144504 GTTCACTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 9 0.35
22 10 0.38
23 7 0.27
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.60
Consensus pattern (23 bp):
TATTTATTTCGTGTATTAATATA
Found at i:4176911 original size:85 final size:85
Alignment explanation
Indices: 4176768--4176938 Score: 306
Period size: 85 Copynumber: 2.0 Consensus size: 85
4176758 CAATCATAGT
*
4176768 TCCCTAACAAACCTGCTGTAGGAATTTCGCATGTAAACAATCACCTTACTCTTCAAATTTGACAT
1 TCCCTAACAAACCTGCTGTAAGAATTTCGCATGTAAACAATCACCTTACTCTTCAAATTTGACAT
4176833 TATTATACAAATACAATAAA
66 TATTATACAAATACAATAAA
*
4176853 TCCCTAACAAACCTGCTGTAAGAATTTCTCATGTAAACAATCACCTTACTCTTCAAATTTGACAT
1 TCCCTAACAAACCTGCTGTAAGAATTTCGCATGTAAACAATCACCTTACTCTTCAAATTTGACAT
* *
4176918 TCTTATACAATTACAATAAA
66 TATTATACAAATACAATAAA
4176938 T
1 T
4176939 GTCTACTTTT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (85 bp):
TCCCTAACAAACCTGCTGTAAGAATTTCGCATGTAAACAATCACCTTACTCTTCAAATTTGACAT
TATTATACAAATACAATAAA
Found at i:4181582 original size:11 final size:11
Alignment explanation
Indices: 4181566--4181590 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4181556 CTAAGTTTGC
4181566 TTAATAAGTAG
1 TTAATAAGTAG
4181577 TTAATAAGTAG
1 TTAATAAGTAG
4181588 TTA
1 TTA
4181591 GTAGAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (11 bp):
TTAATAAGTAG
Found at i:4186495 original size:50 final size:51
Alignment explanation
Indices: 4186428--4186556 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
4186418 GACCATGGAA
4186428 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGAAAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-AAAATG
*
4186479 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGGCAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGGAAAATG
* * * *
4186529 ACAACTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
4186557 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 46 0.65
51 25 0.35
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGGAAAATG
Found at i:4186572 original size:31 final size:31
Alignment explanation
Indices: 4186534--4186724 Score: 301
Period size: 31 Copynumber: 6.2 Consensus size: 31
4186524 AAATGACAAC
4186534 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
4186565 TGAAAAGTGGTAGTTTCAGCTACCTGATTAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
4186596 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
4186627 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
4186658 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
4186689 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
4186720 TGAAA
1 TGAAA
4186725 GTGACAAGTG
Statistics
Matches: 148, Mismatches: 12, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 148 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:4186849 original size:47 final size:47
Alignment explanation
Indices: 4186746--4186860 Score: 142
Period size: 47 Copynumber: 2.4 Consensus size: 47
4186736 CAAGTGATTT
* * * *
4186746 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATATACTA
* *
4186793 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTAATTA
1 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATAT-ACTA
* *
4186841 C-GTGTAAGACCATAGCTGGG
1 CTGTATAAGACCATATCTGGG
4186861 CTATAGCATC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
47 56 0.95
48 3 0.05
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATATACTA
Found at i:4186878 original size:42 final size:42
Alignment explanation
Indices: 4186831--4186912 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
4186821 ATCAGTGAGA
** **
4186831 TATGTAATTACGTGTAAGACCATAGCTGGGCTATAGCATCAT
1 TATGTAAAGACGTGTAAGACCATAGCTGAACTATAGCATCAT
* *
4186873 TATGTAAAGATGTGTAAGACCATAGTTGAACTATAGCATC
1 TATGTAAAGACGTGTAAGACCATAGCTGAACTATAGCATC
4186913 GAAAAAAACG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (42 bp):
TATGTAAAGACGTGTAAGACCATAGCTGAACTATAGCATCAT
Found at i:4188524 original size:133 final size:132
Alignment explanation
Indices: 4188159--4188544 Score: 446
Period size: 133 Copynumber: 2.9 Consensus size: 132
4188149 TAGAAAACAC
* ** * *
4188159 GAGTGAAATTTCAAAGGAATATTTAATTATTTTTAACAAACGGGAAATCGAAACCCAGCACGATA
1 GAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGCAACCCAGCACGATA
* * *
4188224 GGGCACTATTCCTCGAATTGCCAAACATCA-A-ACATTACCTTCGTTTTGA-AA--ATTCTTTAA
66 GGGCACGATT-CTCGAATTGCCAAACA-CAGATA-ATTGCCTT-GTTTTGAGAATTTTTCTTTAA
4188284 AGACAT
127 AGACAT
*
4188290 GAGTGAAATTTCC-AAGGAATATTCGATTATTTTGAACAAACGTGAAATCGCAACCCAGCACGAT
1 GAGTGAAA-TTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGCAACCCAGCACGAT
* * *
4188354 AGGGCACGATTCCCGAATTGCCAAACACCGAGT-ATTGCCTTGTTTTGTAGAATTTTTTTTTAAA
65 AGGGCACGATTCTCGAATTGCCAAACACAGA-TAATTGCCTTGTTTTG-AGAATTTTTCTTTAAA
4188418 -AGCAT
128 GA-CAT
* * * *
4188423 GAGTGAAATCCCAAAGGAATATTCGATTGTTTTGAACAAACGGGGAATTGCAACCCAGCACGATA
1 GAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGCAACCCAGCACGATA
* * * *
4188488 AGGCACGATTTTCGAATTGCCAAACACAGATAATTGCCTCCGTTTTAAAGAATTTTT
66 GGGCACGATTCTCGAATTGCCAAACACAGATAATTGCCT-TGTTTT-GAGAATTTTT
4188545 AGATGAATAA
Statistics
Matches: 219, Mismatches: 23, Indels: 23
0.83 0.09 0.09
Matches are distributed among these distances:
129 7 0.03
130 24 0.11
131 66 0.30
132 8 0.04
133 100 0.46
134 14 0.06
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (132 bp):
GAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGCAACCCAGCACGATA
GGGCACGATTCTCGAATTGCCAAACACAGATAATTGCCTTGTTTTGAGAATTTTTCTTTAAAGAC
AT
Found at i:4191649 original size:133 final size:133
Alignment explanation
Indices: 4191260--4191667 Score: 647
Period size: 133 Copynumber: 3.1 Consensus size: 133
4191250 CTTCGATAAG
* *
4191260 ACAAGATCTGCAATCTTCGGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATC
1 ACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATC
* * ** * * *
4191325 TACTTCACTGCAACTTCAGGAAGATAAGATTCATCGTCTTCGATCTGCTCCACTATAACTTCAGG
66 TGCTTCACTGCAACTTCAGAAAGATAAGATTCGCCGTCCTCGATCTGCTCCACTGTAACTTTAGG
*
4191390 GAG
131 GAA
4191393 ACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATC
1 ACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATC
* * *
4191458 TGCTTCATTGTAACTTCAGAAAGATAAGATTCGCCGTCCTCGACCTGCTCCACTGTAACTTTAGG
66 TGCTTCACTGCAACTTCAGAAAGATAAGATTCGCCGTCCTCGATCTGCTCCACTGTAACTTTAGG
4191523 GAA
131 GAA
*
4191526 ACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATATGATGGTGGCTTAAATC
1 ACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATC
* *
4191591 TGCTTCACTGCAACTTTAGAAAGACAAGATTCGCCGTCCTCGATCTGCTCCA-TCGTAACTTTAG
66 TGCTTCACTGCAACTTCAGAAAGATAAGATTCGCCGTCCTCGATCTGCTCCACT-GTAACTTTAG
*
4191655 GCAA
130 GGAA
4191659 ACAAGATCT
1 ACAAGATCT
4191668 GTAGAATTGG
Statistics
Matches: 254, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
132 1 0.00
133 253 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (133 bp):
ACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATC
TGCTTCACTGCAACTTCAGAAAGATAAGATTCGCCGTCCTCGATCTGCTCCACTGTAACTTTAGG
GAA
Found at i:4198664 original size:20 final size:21
Alignment explanation
Indices: 4198641--4198696 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 21
4198631 AATACTACAT
*
4198641 AAATATGTACATAT-ATATTA
1 AAATATATACATATAATATTA
*
4198661 AAATAAATACATAATAATATTA
1 AAATATATACAT-ATAATATTA
4198683 AAAGTATATACATA
1 AAA-TATATACATA
4198697 AAATGGTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 10 0.33
21 2 0.07
22 10 0.33
23 8 0.27
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (21 bp):
AAATATATACATATAATATTA
Found at i:4198666 original size:24 final size:22
Alignment explanation
Indices: 4198648--4198697 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
4198638 CATAAATATG
4198648 TACAT-AT-ATATTAAAATAAA
1 TACATAATAATATTAAAATAAA
*
4198668 TACATAATAATATTAAAAGTATA
1 TACATAATAATATTAAAA-TAAA
4198691 TACATAA
1 TACATAA
4198698 AATGGTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 5 0.19
21 2 0.08
22 9 0.35
23 10 0.38
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (22 bp):
TACATAATAATATTAAAATAAA
Found at i:4198697 original size:157 final size:154
Alignment explanation
Indices: 4198525--4198838 Score: 336
Period size: 157 Copynumber: 2.0 Consensus size: 154
4198515 AATAGGAATG
* *
4198525 AAAAGTGTATACATAATAA-TACTAAATATATATATACATAATATA-TA-TAAAATGAACATATA
1 AAAAGTATATACATAA-AAGTACTAAA-A-ATACATACATAATATAGTATTAAAAT----ATATA
* * * *
4198587 CAATATATATTAGAAATACTAATAA-CA-AAAAAATATATATTAATAATACTACATAAATATGTA
59 -AATACATATTAGAAATAATAATAATCACAAAAAA-AT-TATTAATAATACTACATAAACATATA
4198650 CATATATATTAAA-ATAAATACATA-ATAATATT
121 CATATATATTAAAGATAAATACATATATAATATT
** *
4198682 AAAAGTATATACATAAAATGGTGTTAAAAATACATACATAATATAGTTATTAAAATATATATATA
1 AAAAGTATATACATAAAA--GTACTAAAAATACATACATAATATAG-TATTAAAATATATAAATA
* *
4198747 CATATTAGAAATAATAATAATGTCACAAAACAATTATTAATAATACTGCATAAACATATACATAT
63 CATATTAGAAATAATAATAA--TCACAAAAAAATTATTAATAATACTACATAAACATATACATAT
*
4198812 ATATTAAAGATATATACATATATAATA
126 ATATTAAAGATAAATACATATATAATA
4198839 AACATATACT
Statistics
Matches: 133, Mismatches: 12, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
155 21 0.16
156 7 0.05
157 66 0.50
158 15 0.11
159 18 0.14
160 6 0.05
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.33
Consensus pattern (154 bp):
AAAAGTATATACATAAAAGTACTAAAAATACATACATAATATAGTATTAAAATATATAAATACAT
ATTAGAAATAATAATAATCACAAAAAAATTATTAATAATACTACATAAACATATACATATATATT
AAAGATAAATACATATATAATATT
Found at i:4198736 original size:25 final size:25
Alignment explanation
Indices: 4198656--4198738 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
4198646 TGTACATATA
4198656 TATTAAAATAAATACATAATA-A--
1 TATTAAAATAAATACATAATATAGT
* * *
4198678 TATTAAAAGTATATACATAAAATGGT
1 TATTAAAA-TAAATACATAATATAGT
* *
4198704 GT-TAAAAATACATACATAATATAGT
1 -TATTAAAATAAATACATAATATAGT
4198729 TATTAAAATA
1 TATTAAAATA
4198739 TATATATACA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
22 8 0.17
23 11 0.23
24 1 0.02
25 21 0.45
26 5 0.11
27 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (25 bp):
TATTAAAATAAATACATAATATAGT
Found at i:4198828 original size:21 final size:21
Alignment explanation
Indices: 4198802--4198859 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
4198792 CTGCATAAAC
* *
4198802 ATATACATATATATTAAAGAT
1 ATATACATATATAATAAACAT
4198823 ATATACATATATAATAAACAT
1 ATATACATATATAATAAACAT
4198844 ATACTA-ATA-ATAATAA
1 ATA-TACATATATAATAA
4198860 TAATAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 7 0.21
21 25 0.74
22 2 0.06
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (21 bp):
ATATACATATATAATAAACAT
Found at i:4198854 original size:3 final size:3
Alignment explanation
Indices: 4198848--4198889 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
4198838 AAACATATAC
*
4198848 TAA TAA TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4198890 GATGTATGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:4198992 original size:18 final size:17
Alignment explanation
Indices: 4198951--4199019 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 17
4198941 AACAATAGTG
4198951 AAAATAATAAGTATA-ATA
1 AAAAT-ATAA-TATATATA
4198969 ATAAATATAATGATATATA
1 A-AAATATAAT-ATATATA
*
4198988 AAAATATCACTATATATA
1 AAAATAT-AATATATATA
4199006 AAAATAT-ATATATA
1 AAAATATAATATATA
4199020 CGCGTATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
16 6 0.13
17 1 0.02
18 28 0.62
19 10 0.22
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (17 bp):
AAAATATAATATATATA
Found at i:4199121 original size:27 final size:25
Alignment explanation
Indices: 4199090--4199148 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 25
4199080 TAATAATAAC
4199090 ATATACATAATACGGTA-TTAAAAATAT
1 ATATACATAATA--GTATTTAAAAA-AT
4199117 ATATA-AT-ATAGTATTTAAAAAAT
1 ATATACATAATAGTATTTAAAAAAT
*
4199140 GTATACATA
1 ATATACATA
4199149 GTATATATAC
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
23 9 0.32
24 9 0.32
25 3 0.11
26 2 0.07
27 5 0.18
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.36
Consensus pattern (25 bp):
ATATACATAATAGTATTTAAAAAAT
Found at i:4199130 original size:23 final size:24
Alignment explanation
Indices: 4199090--4199137 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
4199080 TAATAATAAC
*
4199090 ATATACATAATACGGTA-TTAAAA
1 ATATACATAATACAGTATTTAAAA
* *
4199113 ATATATATAATATAGTATTTAAAA
1 ATATACATAATACAGTATTTAAAA
4199137 A
1 A
4199138 ATGTATACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.35
Consensus pattern (24 bp):
ATATACATAATACAGTATTTAAAA
Found at i:4199318 original size:46 final size:47
Alignment explanation
Indices: 4199231--4199323 Score: 120
Period size: 46 Copynumber: 2.0 Consensus size: 47
4199221 TAGTATATAC
* *
4199231 ATAATATAGTTATTAAAAAAATACGTAAGATAATATGAAAAATACAA
1 ATAATATAGTTATTAAAAAAATACATAACATAATATGAAAAATACAA
*
4199278 ATAATATAG-TATTAAAGATATATACATAACAT-ATAT-AAAAATACAA
1 ATAATATAGTTATTAAA-A-AAATACATAACATAATATGAAAAATACAA
4199324 TATTAAAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
46 17 0.41
47 14 0.34
48 10 0.24
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.29
Consensus pattern (47 bp):
ATAATATAGTTATTAAAAAAATACATAACATAATATGAAAAATACAA
Found at i:4199326 original size:15 final size:15
Alignment explanation
Indices: 4199306--4199342 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
4199296 TATATACATA
4199306 ACATATATAAAA-AT
1 ACATATATAAAAGAT
4199320 ACA-ATATTAAAAGAT
1 ACATATA-TAAAAGAT
4199335 ACATATAT
1 ACATATAT
4199343 GTAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
13 3 0.15
14 8 0.40
15 6 0.30
16 3 0.15
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30
Consensus pattern (15 bp):
ACATATATAAAAGAT
Found at i:4199392 original size:23 final size:23
Alignment explanation
Indices: 4199356--4199399 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
4199346 ATATATATAA
*
4199356 AAAAAATGTATACATAATATAGT
1 AAAAAATATATACATAATATAGT
*
4199379 AAAAAATATTTACATAATATA
1 AAAAAATATATACATAATATA
4199400 TACATATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (23 bp):
AAAAAATATATACATAATATAGT
Found at i:4199583 original size:34 final size:35
Alignment explanation
Indices: 4199508--4199591 Score: 93
Period size: 34 Copynumber: 2.4 Consensus size: 35
4199498 TATACTACTA
*
4199508 TTAATAATAATAAGAATAATATAAATAGTAGTAAAT
1 TTAATAAT-ATAAGAATAATATAAATAGTAATAAAT
* * *
4199544 ATAATAATATTA-AATAATATTAAA-AGTAATTAAT
1 TTAATAATATAAGAATAATA-TAAATAGTAATAAAT
4199578 TTAATAATA-AAGAA
1 TTAATAATATAAGAA
4199592 ATGAAAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
33 1 0.03
34 25 0.62
35 7 0.17
36 7 0.17
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (35 bp):
TTAATAATATAAGAATAATATAAATAGTAATAAAT
Found at i:4200192 original size:20 final size:20
Alignment explanation
Indices: 4200167--4200220 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
4200157 AAAAAGAAGG
4200167 TATTTTTTTTTATTTTTTAT
1 TATTTTTTTTTATTTTTTAT
* **
4200187 TATTTTCTTTGCTTTTTTAT
1 TATTTTTTTTTATTTTTTAT
4200207 TATATATTTTTTTA
1 TAT-T-TTTTTTTA
4200221 AAAATATGTG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 20 0.77
21 1 0.04
22 5 0.19
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.78
Consensus pattern (20 bp):
TATTTTTTTTTATTTTTTAT
Found at i:4201589 original size:89 final size:85
Alignment explanation
Indices: 4201257--4201642 Score: 483
Period size: 85 Copynumber: 4.4 Consensus size: 85
4201247 CCTGTGACCC
* * **
4201257 GAGGCTCAACTCACCTCTCACAATATGAGCTGACTTTTAAT-AAAAACAGAATTTGAAAAACAAA
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTT--TGAAAAATA-AA-TTGAAAAACGGA
* *
4201321 AACTGAAAA-TACCTCAGCGTGTCCC
61 AA-TTAAAATTACCTCAGCGTGTCCT
4201346 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT-AAAACATAAATTGAAAAACGGAAATT
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAA-ATAAATTGAAAAACGGAAATT
*
4201410 GAAAA-TACCTTAGCGTGTCCT
65 -AAAATTACCTCAGCGTGTCCT
* *
4201431 GTGGCTCAACTCAACTCTCACAATATGAGTTGATTTTTGAAAAATAAATTGAAAAACGGAAATTA
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAAATTGAAAAACGGAAATTA
** *
4201496 AAATTACCTCAGTATGTTCT
66 AAATTACCTCAGCGTGTCCT
* * *
4201516 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATAAATTGAAAACCGGAA
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGA----TTTTTGAAAAATAAATTGAAAAACGGAA
*
4201581 ATTAAAATTATCTCAGCGTGTCCT
62 ATTAAAATTACCTCAGCGTGTCCT
*
4201605 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
4201643 TTTTTAAAGT
Statistics
Matches: 266, Mismatches: 23, Indels: 20
0.86 0.07 0.06
Matches are distributed among these distances:
84 5 0.02
85 133 0.50
86 11 0.04
87 2 0.01
88 4 0.02
89 111 0.42
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (85 bp):
GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAAATTGAAAAACGGAAATTA
AAATTACCTCAGCGTGTCCT
Found at i:4201601 original size:174 final size:171
Alignment explanation
Indices: 4201257--4201642 Score: 485
Period size: 174 Copynumber: 2.2 Consensus size: 171
4201247 CCTGTGACCC
*
4201257 GAGGCTCAACTCACCTCTCACAATATGAGCTGACTTTTAATAAAAACAGAATTTGAAAAACAAAA
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTT--TAAAAACAGAATTTGAAAAACAAAA
* *
4201322 ACTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTAAA
63 ACTGAAAATACCTCAGCATGTCCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTAAA
*
4201387 ACATAAATTGAAAAACGGAAATTGAAAATACCTTAGCGTGTCCT
128 ACATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCT
* * * **
4201431 GTGGCTCAACTCAACTCTCACAATATGAGTTGATTTTTGAAAAATA-AA-TTGAAAAACGGAAA-
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT-AAAAACAGAATTTGAAAAACAAAAAC
* * * * *
4201493 TTAAAATTACCTCAGTATGTTCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT
65 TGAAAA-TACCTCAGCATGTCCCAAGGCTCAACTCACCTCTCACAATATGAGTTGA----TTTTT
* *
4201558 GAAAA-ATAAATTGAAAACCGGAAATT-AAAATTATCTCAGCGTGTCCT
125 -AAAACATAAATTGAAAAACGGAAATTGAAAA-TACCTCAGCGTGTCCT
*
4201605 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
4201643 TTTTTAAAGT
Statistics
Matches: 185, Mismatches: 19, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
169 5 0.03
170 55 0.30
171 3 0.02
172 6 0.03
173 8 0.04
174 104 0.56
175 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (171 bp):
GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTAAAAACAGAATTTGAAAAACAAAAACT
GAAAATACCTCAGCATGTCCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTAAAACA
TAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCT
Found at i:4207376 original size:38 final size:39
Alignment explanation
Indices: 4207326--4207621 Score: 290
Period size: 46 Copynumber: 6.9 Consensus size: 39
4207316 CTGATATGAA
* *
4207326 ATGTGTAAGACCATAGTTGAAAGATACTATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
4207365 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
4207408 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
4207449 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
4207492 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G
*
4207540 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
4207579 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
4207622 ATGACAGAAA
Statistics
Matches: 228, Mismatches: 4, Indels: 43
0.83 0.01 0.16
Matches are distributed among these distances:
38 70 0.31
39 1 0.00
41 6 0.03
43 4 0.02
44 1 0.00
46 145 0.64
48 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:4207432 original size:46 final size:46
Alignment explanation
Indices: 4207365--4207665 Score: 422
Period size: 46 Copynumber: 6.7 Consensus size: 46
4207355 TGGCAACCTG
4207365 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
4207411 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
4207449 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
4207495 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
4207541 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
4207587 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
4207633 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
4207666 TCACGTCAAA
Statistics
Matches: 233, Mismatches: 13, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
38 36 0.15
41 2 0.01
43 2 0.01
45 1 0.00
46 192 0.82
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:4207451 original size:84 final size:84
Alignment explanation
Indices: 4207316--4207621 Score: 477
Period size: 84 Copynumber: 3.5 Consensus size: 84
4207306 AGTGTGCTCT
* *
4207316 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACTATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
4207381 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
4207400 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
4207465 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
4207484 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
4207549 ACCATGGTTGAAAGATACCATGGCAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * **
4207576 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
4207622 ATGACAGAAA
Statistics
Matches: 207, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
84 129 0.62
89 1 0.00
91 1 0.00
92 76 0.37
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:4207973 original size:16 final size:17
Alignment explanation
Indices: 4207952--4207984 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4207942 ATGATGAAGC
*
4207952 ATAAAAT-ATTGATATA
1 ATAAAATGAATGATATA
4207968 ATAAAATGAATGATATA
1 ATAAAATGAATGATATA
4207985 TGCTTGTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (17 bp):
ATAAAATGAATGATATA
Found at i:4213713 original size:22 final size:22
Alignment explanation
Indices: 4213682--4213726 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4213672 AATGAGTGAA
*
4213682 TGAATGAATGACAAATGAATGT
1 TGAATAAATGACAAATGAATGT
*
4213704 TGAATAAATGACGAATGAATGT
1 TGAATAAATGACAAATGAATGT
4213726 T
1 T
4213727 AGTCATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATGT
Found at i:4219568 original size:21 final size:23
Alignment explanation
Indices: 4219542--4219585 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
4219532 TCATTAAATA
4219542 TATATT-TAT-ATAAAAATATTT
1 TATATTATATGATAAAAATATTT
4219563 TATATTAATATGATAAAAATATT
1 TATATT-ATATGATAAAAATATT
4219586 GAATTAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TATATTATATGATAAAAATATTT
Found at i:4219662 original size:16 final size:15
Alignment explanation
Indices: 4219637--4219675 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
4219627 CTTAATAAAT
4219637 TTAAAAATTAAATTA
1 TTAAAAATTAAATTA
*
4219652 TTAAAATATTAATTTA
1 TTAAAA-ATTAAATTA
4219668 TATAAAAA
1 T-TAAAAA
4219676 AGTCCTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 6 0.29
16 10 0.48
17 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAAAAATTAAATTA
Found at i:4220219 original size:21 final size:21
Alignment explanation
Indices: 4220193--4220235 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
4220183 AACTATAAAA
4220193 AATTA-TAAAAAAAATTTAGTC
1 AATTATTAAAAAAAATTT-GTC
*
4220214 AATTATTCAAAAAAATTTGTC
1 AATTATTAAAAAAAATTTGTC
4220235 A
1 A
4220236 TCAGCTAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (21 bp):
AATTATTAAAAAAAATTTGTC
Found at i:4235092 original size:15 final size:15
Alignment explanation
Indices: 4235074--4235122 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
4235064 TAGGGTTAAA
4235074 AATAATTATAAAAAT
1 AATAATTATAAAAAT
4235089 AATAATTATATTAAAAAT
1 AATAA-T-TA-TAAAAAT
4235107 AAATAA-TATAAAAAT
1 -AATAATTATAAAAAT
4235122 A
1 A
4235123 CTCAATATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
14 1 0.03
15 12 0.40
16 3 0.10
17 2 0.07
18 7 0.23
19 5 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAATTATAAAAAT
Found at i:4235116 original size:18 final size:17
Alignment explanation
Indices: 4235073--4235120 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
4235063 TTAGGGTTAA
4235073 AAATAAT-TATAAAAAT
1 AAATAATATATAAAAAT
4235089 -AATAATTATATTAAAAAT
1 AAATAA-TATA-TAAAAAT
4235107 AAATAATATA-AAAA
1 AAATAATATATAAAA
4235121 TACTCAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 5 0.18
16 5 0.18
17 2 0.07
18 11 0.39
19 5 0.18
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAATATATAAAAAT
Found at i:4245137 original size:21 final size:21
Alignment explanation
Indices: 4245100--4245140 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4245090 TAGAAAGACT
4245100 AAATTCATAAAAAATAAAAAA
1 AAATTCATAAAAAATAAAAAA
*
4245121 AAATT-ATAAATATATAAAAA
1 AAATTCATAAA-AAATAAAAA
4245141 TTACACATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATTCATAAAAAATAAAAAA
Found at i:4250202 original size:16 final size:17
Alignment explanation
Indices: 4250167--4250213 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
4250157 GAAAGATATT
4250167 TATTAAATAAATAATTA
1 TATTAAATAAATAATTA
* *
4250184 TATTAAA-ATATATTTA
1 TATTAAATAAATAATTA
4250200 TATGATAAATAAAT
1 TAT--TAAATAAAT
4250214 GTAAAATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 10 0.42
17 7 0.29
18 4 0.17
19 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TATTAAATAAATAATTA
Found at i:4252504 original size:46 final size:46
Alignment explanation
Indices: 4252451--4252724 Score: 449
Period size: 46 Copynumber: 6.0 Consensus size: 46
4252441 AGTGTGCTCT
*
4252451 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
4252497 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
4252543 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
4252589 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
4252635 GTGATATGAAATGAATAAGTCCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
4252681 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
4252725 TCATGTCAAA
Statistics
Matches: 218, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 218 1.00
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:4254284 original size:47 final size:48
Alignment explanation
Indices: 4254212--4254389 Score: 191
Period size: 47 Copynumber: 3.8 Consensus size: 48
4254202 CACAATCGAT
* *
4254212 AAGTACCTATACCATAACCCGTAGCCAAATCAAGGTAACTT-ATCCCG
1 AAGTACCTATACCATGACCCGTAGCCAAATCAAGGTAACTTCATCCCA
* * * *
4254259 GAGTACCTATACCATGACCCTTAGCCAAATCAAGGTAA-TTCCTCTCA
1 AAGTACCTATACCATGACCCGTAGCCAAATCAAGGTAACTTCATCCCA
* * * * **
4254306 AAATACGTATATCATGACCCGTAGCCAAATCAAGGTAACTAC-TCTAA
1 AAGTACCTATACCATGACCCGTAGCCAAATCAAGGTAACTTCATCCCA
* * * *
4254353 AAATACCTATATCATGGCCCGTAGCTAAATCAAGGTA
1 AAGTACCTATACCATGACCCGTAGCCAAATCAAGGTA
4254390 TTGTTCGCAC
Statistics
Matches: 113, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
46 2 0.02
47 109 0.96
48 2 0.02
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (48 bp):
AAGTACCTATACCATGACCCGTAGCCAAATCAAGGTAACTTCATCCCA
Found at i:4254389 original size:94 final size:94
Alignment explanation
Indices: 4254219--4254389 Score: 227
Period size: 94 Copynumber: 1.8 Consensus size: 94
4254209 GATAAGTACC
*** * *
4254219 TATACCATAACCCGTAGCCAAATCAAGGTAACTTATCCCGGAGTACCTATACCATGACCCTTAGC
1 TATACCATAACCCGTAGCCAAATCAAGGTAACTTATCCAAAAATACCTATACCATGACCCGTAGC
4254284 CAAATCAAGGTAATTCCTCTCAAAATACG
66 CAAATCAAGGTAATTCCTCTCAAAATACG
* * * * *
4254313 TATATCATGACCCGTAGCCAAATCAAGGTAAC-TACTCTAAAAATACCTATATCATGGCCCGTAG
1 TATACCATAACCCGTAGCCAAATCAAGGTAACTTA-TCCAAAAATACCTATACCATGACCCGTAG
*
4254377 CTAAATCAAGGTA
65 CCAAATCAAGGTA
4254390 TTGTTCGCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
93 2 0.03
94 63 0.97
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.24
Consensus pattern (94 bp):
TATACCATAACCCGTAGCCAAATCAAGGTAACTTATCCAAAAATACCTATACCATGACCCGTAGC
CAAATCAAGGTAATTCCTCTCAAAATACG
Found at i:4257682 original size:19 final size:20
Alignment explanation
Indices: 4257649--4257686 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4257639 TTGTTTGCTT
4257649 AAATTATAACATATAATATA
1 AAATTATAACATATAATATA
*
4257669 AAATTATAA-TTATAATAT
1 AAATTATAACATATAATAT
4257687 TAACATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
AAATTATAACATATAATATA
Found at i:4263532 original size:20 final size:21
Alignment explanation
Indices: 4263481--4263551 Score: 67
Period size: 20 Copynumber: 3.4 Consensus size: 21
4263471 GAAAGTAATG
* *
4263481 ATTATGTTT-ATGATATTTTAT
1 ATTAT-TTTAATGAGATATTAT
*
4263502 GATTA-TTTAATTAGATA-TAT
1 -ATTATTTTAATGAGATATTAT
*
4263522 ATTATTTTAATGAGATATTTT
1 ATTATTTTAATGAGATATTAT
4263543 ATTATTTTA
1 ATTATTTTA
4263552 TTATTAATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
19 4 0.10
20 17 0.41
21 16 0.39
22 4 0.10
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTATTTTAATGAGATATTAT
Done.