Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 110 of 344
Found at i:37156648 original size:21 final size:20
Alignment explanation
Indices: 37156624--37156662 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37156614 GTGTAAATGT
37156624 AGTAACATAATTGTTATTTTA
1 AGTAACATAA-TGTTATTTTA
**
37156645 AGTAATTTAATGTTATTT
1 AGTAACATAATGTTATTT
37156663 ATATGATAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
AGTAACATAATGTTATTTTA
Found at i:37160617 original size:13 final size:13
Alignment explanation
Indices: 37160599--37160624 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37160589 CTCGGCAGGA
37160599 ACACGCCCGTGTG
1 ACACGCCCGTGTG
37160612 ACACGCCCGTGTG
1 ACACGCCCGTGTG
37160625 CGATTGCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:37165737 original size:49 final size:49
Alignment explanation
Indices: 37165661--37165756 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
37165651 AGTCCCTTTT
* * * *
37165661 CATTAACAATATTAGTCTGGGCTTGAGCCCATTTCAGTAGCAGAGGCGG
1 CATTAACAATATCAGTCCGGGCCTGAGCCCATTTCAGTAACAGAGGCGG
37165710 CATTAACAATATCAGTCCGGGCCTGAGCCCATTTCAGTAACAGAGGC
1 CATTAACAATATCAGTCCGGGCCTGAGCCCATTTCAGTAACAGAGGC
37165757 AGTCTGGGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (49 bp):
CATTAACAATATCAGTCCGGGCCTGAGCCCATTTCAGTAACAGAGGCGG
Found at i:37166504 original size:16 final size:16
Alignment explanation
Indices: 37166483--37166525 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
37166473 ACAACCCATA
37166483 TTTTGGCTTTTC-ACCT
1 TTTTGGCTTTTCGA-CT
37166499 TTTTGGCTTTTCGACT
1 TTTTGGCTTTTCGACT
*
37166515 TTTTAGCTTTT
1 TTTTGGCTTTT
37166526 GTCATTTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 24 0.96
17 1 0.04
ACGTcount: A:0.07, C:0.19, G:0.14, T:0.60
Consensus pattern (16 bp):
TTTTGGCTTTTCGACT
Found at i:37186662 original size:40 final size:40
Alignment explanation
Indices: 37186618--37186839 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
37186608 GCTCCTCGTT
*
37186618 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
37186658 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
37186698 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
37186738 GC-AATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCACA
1 -CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
37186777 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
37186818 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
37186840 AGACATCATT
Statistics
Matches: 158, Mismatches: 14, Indels: 20
0.82 0.07 0.10
Matches are distributed among these distances:
38 3 0.02
39 28 0.18
40 113 0.72
41 14 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:37186802 original size:119 final size:120
Alignment explanation
Indices: 37186620--37186835 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
37186610 TCCTCGTTCA
* *
37186620 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* *
37186685 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAGC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAGC
* * **
37186740 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
* *
37186802 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
37186836 GCCCAGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 59 0.71
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAGC
Found at i:37194642 original size:40 final size:40
Alignment explanation
Indices: 37194574--37194812 Score: 240
Period size: 40 Copynumber: 6.0 Consensus size: 40
37194564 CGGAATTTAA
** * *
37194574 CCGGATATAGCT-ACTCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
37194614 CCGGTTATAGTAACTTGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37194654 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37194693 CCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37194732 CC-GAAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37194772 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37194812 C
1 C
37194813 TGGACATCAT
Statistics
Matches: 169, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
38 4 0.02
39 69 0.41
40 82 0.49
41 14 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37194695 original size:79 final size:77
Alignment explanation
Indices: 37194593--37194809 Score: 229
Period size: 79 Copynumber: 2.7 Consensus size: 77
37194583 GCTACTCGTT
* * *
37194593 CAAACGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTTGCACAA-TGCCTTCGGGACTTAACCCGA
*
37194658 ATTTAGTAACTCGCA
63 AATTAGTAACTCGCA
* * * *
37194673 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGAA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTTGCAC-AATGCCTTCGGGACTTAACCCGAA
*
37194737 ATTAGTATCTCGCA
64 ATTAGTAACTCGCA
* * * * *
37194751 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAACTT-GCACAATGCCTTCGGGACTTA
37194810 GCCTGGACAT
Statistics
Matches: 114, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 35 0.31
79 55 0.48
80 24 0.21
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTTGCACAATGCCTTCGGGACTTAACCCGAAAT
TAGTAACTCGCA
Found at i:37194710 original size:39 final size:40
Alignment explanation
Indices: 37194593--37194812 Score: 236
Period size: 39 Copynumber: 5.5 Consensus size: 40
37194583 GCTACTCGTT
* * * *
37194593 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
37194633 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
37194673 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
37194712 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
37194751 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
37194792 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
37194813 TGGACATCAT
Statistics
Matches: 157, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 73 0.46
40 69 0.44
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:37202012 original size:20 final size:16
Alignment explanation
Indices: 37201973--37202007 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
37201963 CTTCGAGGGA
37201973 GAGAAATGTATGTGGC
1 GAGAAATGTATGTGGC
37201989 GAGAAATGTATGTGGC
1 GAGAAATGTATGTGGC
37202005 GAG
1 GAG
37202008 TGAGAGCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.06, G:0.40, T:0.23
Consensus pattern (16 bp):
GAGAAATGTATGTGGC
Found at i:37207923 original size:14 final size:14
Alignment explanation
Indices: 37207904--37207930 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37207894 ATATTAAAAA
37207904 ATAATTAAGAACAC
1 ATAATTAAGAACAC
37207918 ATAATTAAGAACA
1 ATAATTAAGAACA
37207931 AGTCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:37210447 original size:22 final size:23
Alignment explanation
Indices: 37210422--37210473 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
37210412 TATAAAACCT
37210422 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
**
37210444 AATAAAAAGTAGTCTTAAATTAA
1 AATAAAAAGTAGTCTTAAAGAAA
37210467 AATAAAA
1 AATAAAA
37210474 TGAACAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.23
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:37221146 original size:22 final size:22
Alignment explanation
Indices: 37221120--37221164 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
37221110 CCCAGTTAAG
*
37221120 CACAAGGTTTGTTTCCTTACAT
1 CACAAGGTTTGTTTCCTCACAT
37221142 CACAAGGTTTGTTTCCTCACAT
1 CACAAGGTTTGTTTCCTCACAT
37221164 C
1 C
37221165 TTTTTAACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (22 bp):
CACAAGGTTTGTTTCCTCACAT
Found at i:37224610 original size:40 final size:40
Alignment explanation
Indices: 37224438--37224603 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
37224428 AACCCAAGTA
* **
37224438 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37224477 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37224517 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37224557 CCTTCGGGACTTAGCCCGGATATAGTCACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37224597 CCTTCGG
1 CCTTCGG
37224604 ATCTTAGTCC
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 13 0.11
40 108 0.89
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37232176 original size:40 final size:40
Alignment explanation
Indices: 37232095--37232176 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 40
37232085 AACAAAGGTC
* *
37232095 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTAGCACAAATGCCTTCGAGACTT
*
37232135 AGCCCGGATATAGTCACTAGCACAAATGCCTTC-AGATCTT
1 AGCCCGGATATAGTAACTAGCACAAATGCCTTCGAGA-CTT
37232175 AG
1 AG
37232177 TCCGATTATC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.05
40 36 0.95
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
AGCCCGGATATAGTAACTAGCACAAATGCCTTCGAGACTT
Found at i:37235188 original size:54 final size:54
Alignment explanation
Indices: 37235125--37235281 Score: 201
Period size: 54 Copynumber: 2.9 Consensus size: 54
37235115 CAAAAAGTAA
* *
37235125 TGGTATTTCGGTAATTTTAGAAATTGAGGG-TATTTTGGTAATTTCACAAACCAG
1 TGGTATTTCGGTAATTTTACAAACTG-GGGATATTTTGGTAATTTCACAAACCAG
* *
37235179 TGGTATTTCGGTAATTTTACAAACTGGGGATATTTTGGTAATTTTACAAACTAG
1 TGGTATTTCGGTAATTTTACAAACTGGGGATATTTTGGTAATTTCACAAACCAG
* * ***
37235233 GGGTATTTTGGTAATTTTACAAACTAGGGG-TATTTCAATAATTTCACAA
1 TGGTATTTCGGTAATTTTACAAACT-GGGGATATTTTGGTAATTTCACAA
37235282 TCGAGGGTAA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
53 3 0.03
54 84 0.92
55 4 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
TGGTATTTCGGTAATTTTACAAACTGGGGATATTTTGGTAATTTCACAAACCAG
Found at i:37235275 original size:81 final size:81
Alignment explanation
Indices: 37235128--37235281 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
37235118 AAAGTAATGG
* * * **
37235128 TATTTCGGTAATTTTAGAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTCGGTAA
1 TATTTCGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTCAATAA
*
37235193 TTTTACAAACTGGGGA
66 TTTCACAAACTGGGGA
* * *
37235209 TATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAATA
1 TATTTCGGTAATTTTACAAA-TAGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTCAATA
37235273 ATTTCACAA
65 ATTTCACAA
37235282 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 61 0.97
82 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
TATTTCGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTCAATAA
TTTCACAAACTGGGGA
Found at i:37235281 original size:27 final size:27
Alignment explanation
Indices: 37235126--37235268 Score: 182
Period size: 27 Copynumber: 5.3 Consensus size: 27
37235116 AAAAAGTAAT
* *
37235126 GGTATTTCGGTAATTTTAGAAA-TTGAG
1 GGTATTTCGGTAATTTTACAAACTAG-G
* * * *
37235153 GGTATTTTGGTAATTTCACAAACCAGT
1 GGTATTTCGGTAATTTTACAAACTAGG
37235180 GGTATTTCGGTAATTTTACAAACT-GG
1 GGTATTTCGGTAATTTTACAAACTAGG
*
37235206 GGATATTTTGGTAATTTTACAAACTAGG
1 GG-TATTTCGGTAATTTTACAAACTAGG
*
37235234 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTTACAAACTAGG
37235261 GGTATTTC
1 GGTATTTC
37235269 AATAATTTCA
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.03
27 93 0.92
28 5 0.05
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAACTAGG
Found at i:37235288 original size:27 final size:27
Alignment explanation
Indices: 37235163--37235281 Score: 114
Period size: 27 Copynumber: 4.4 Consensus size: 27
37235153 GGTATTTTGG
* * * **
37235163 TAATTTCACAAACCAGTGGTATTTCGG
1 TAATTTTACAAACTAGGGGTATTTCAA
***
37235190 TAATTTTACAAACT-GGGGATATTTTGG
1 TAATTTTACAAACTAGGGG-TATTTCAA
***
37235217 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTCAA
37235244 TAATTTTACAAACTAGGGGTATTTCAA
1 TAATTTTACAAACTAGGGGTATTTCAA
*
37235271 TAATTTCACAA
1 TAATTTTACAA
37235282 TCGAGGGTAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.04
27 75 0.91
28 4 0.05
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAACTAGGGGTATTTCAA
Found at i:37235314 original size:27 final size:27
Alignment explanation
Indices: 37235280--37235477 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
37235270 ATAATTTCAC
*
37235280 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37235307 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
37235334 AATTGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37235361 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37235388 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37235415 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37235442 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
37235469 AATCGAGGG
1 AATCGAGGG
37235478 CATTTCAGTA
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:37235396 original size:81 final size:81
Alignment explanation
Indices: 37235280--37235477 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
37235270 ATAATTTCAC
* * * * * *
37235280 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATTGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGATAATTTTGTAAATCGAGGGT
*
37235344 AAAACAGTAATTCTGTA
65 AAAACAGTAATTCTATA
*
37235361 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
*
37235426 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
37235442 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
37235478 CATTTCAGTA
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 106 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
AAACAGTAATTCTATA
Found at i:37244330 original size:16 final size:16
Alignment explanation
Indices: 37244306--37244337 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37244296 CACTTTTCTG
37244306 GCTTGTCAGCCTTTCA
1 GCTTGTCAGCCTTTCA
*
37244322 GCTTTTCAGCCTTTCA
1 GCTTGTCAGCCTTTCA
37244338 ACCTTCGTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.31, G:0.16, T:0.41
Consensus pattern (16 bp):
GCTTGTCAGCCTTTCA
Found at i:37248202 original size:30 final size:30
Alignment explanation
Indices: 37248166--37248226 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
37248156 ATTCCCGAGC
* *
37248166 TTAGGGGCAAAAGTGTAATTATGCAAAAGT
1 TTAGGGGCAAAAATATAATTATGCAAAAGT
* *
37248196 TTAGGGGCAAAAATATAATTTTGCCAAAGT
1 TTAGGGGCAAAAATATAATTATGCAAAAGT
37248226 T
1 T
37248227 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TTAGGGGCAAAAATATAATTATGCAAAAGT
Found at i:37256355 original size:27 final size:27
Alignment explanation
Indices: 37256325--37256502 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
37256315 ATATTGAGTC
* *
37256325 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
37256352 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
37256379 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
37256407 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
37256434 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
37256461 CGCACACTTAGTGCAACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
37256488 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37256503 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37256464 original size:82 final size:81
Alignment explanation
Indices: 37256346--37256501 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37256336 TGCTATATAA
* * *
37256346 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGCCAAA-TCGCA
37256411 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37256428 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGCCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGCCAAATCGCA
37256492 CACTTAGTGC
65 CACTTAGTGC
37256502 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGCCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37260782 original size:47 final size:47
Alignment explanation
Indices: 37260717--37260809 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
37260707 TATGAAAGAA
*
37260717 AACATCTCAAAAGCATAAATATAACAAAACATAAGAAAACCCAAAAG
1 AACATCTCAAAAGCATAAATAGAACAAAACATAAGAAAACCCAAAAG
37260764 AACATCTCAAAAGCATAAATAGAACAAAACATAAGAAAACCCAAAA
1 AACATCTCAAAAGCATAAATAGAACAAAACATAAGAAAACCCAAAA
37260810 CTCCTGAAGG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.62, C:0.19, G:0.06, T:0.12
Consensus pattern (47 bp):
AACATCTCAAAAGCATAAATAGAACAAAACATAAGAAAACCCAAAAG
Found at i:37266095 original size:46 final size:46
Alignment explanation
Indices: 37266042--37266217 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
37266032 TATTTGGGCA
37266042 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
* *
37266088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATG-GATGCGAA-T--G
* ** *
37266133 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
* *
37266181 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
37266218 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
45 1 0.01
46 63 0.57
47 28 0.25
48 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
Found at i:37266197 original size:93 final size:93
Alignment explanation
Indices: 37266038--37266210 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
37266028 AGGATATTTG
* *
37266038 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
37266103 TTGAGTCCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCAAGTTCAAGAGATGTAACTA
* ** *
37266131 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
37266196 TTGAGTCCAAGTTCA
66 TTGAGTCCAAGTTCA
37266211 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCAAGAGATGTAACTA
Found at i:37269178 original size:15 final size:15
Alignment explanation
Indices: 37269158--37269226 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
37269148 GTATCTTGGG
37269158 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
37269173 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
37269188 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
37269203 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
37269218 TTTCTTTAT
1 TTTCTTTAT
37269227 TCGATTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:37269227 original size:30 final size:30
Alignment explanation
Indices: 37269149--37269228 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
37269139 CATAGTATCG
* * *
37269149 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
37269179 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
37269209 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
37269229 GATTTTCTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:37271212 original size:46 final size:46
Alignment explanation
Indices: 37271159--37271283 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
37271149 TATTTGGGCA
* *
37271159 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
37271205 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
37271251 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
37271284 GGCCTCCCCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:37281496 original size:18 final size:17
Alignment explanation
Indices: 37281470--37281503 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37281460 GCCAAAAGGA
37281470 AAAAGAAAAATTAGAAAG
1 AAAAGAAAAATT-GAAAG
*
37281488 AAAATAAAAATTGAAA
1 AAAAGAAAAATTGAAA
37281504 TTGAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAAGAAAAATTGAAAG
Found at i:37297596 original size:22 final size:23
Alignment explanation
Indices: 37297571--37297622 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
37297561 TATAAAACCT
*
37297571 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAACAAA
*
37297593 AATAAAAAGTAGTCTTAAACTAA
1 AATAAAAAGTAGTCTTAAACAAA
37297616 AATAAAA
1 AATAAAA
37297623 GGAACAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.65, C:0.06, G:0.08, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAACAAA
Found at i:37326018 original size:20 final size:19
Alignment explanation
Indices: 37325983--37326023 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
37325973 ATGTACAAAG
* *
37325983 AGATATATATTGATAAAGAT
1 AGATATATAATCAT-AAGAT
37326003 AGATATATAATCATAAGAT
1 AGATATATAATCATAAGAT
37326022 AG
1 AG
37326024 GGAGAGAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.51, C:0.02, G:0.15, T:0.32
Consensus pattern (19 bp):
AGATATATAATCATAAGAT
Found at i:37326413 original size:22 final size:23
Alignment explanation
Indices: 37326388--37326439 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
37326378 TATAAAACCT
*
37326388 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAACAAA
*
37326410 AATAAAAAGTAGTCTTAAACTAA
1 AATAAAAAGTAGTCTTAAACAAA
37326433 AATAAAA
1 AATAAAA
37326440 GGAACAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.65, C:0.06, G:0.08, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAACAAA
Found at i:37356663 original size:28 final size:28
Alignment explanation
Indices: 37356598--37356748 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
37356588 GAGATTGGCG
* * * *
37356598 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
37356627 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37356655 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
37356683 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
37356711 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
37356738 CTGAGTGTGCG
1 CTAAGTGTGCG
37356749 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:37364838 original size:28 final size:28
Alignment explanation
Indices: 37364798--37364951 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
37364788 TAAATTGTAC
37364798 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
37364826 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
37364854 GGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
37364882 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
37364910 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
37364937 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37364952 GGCTTAATAT
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.20
28 98 0.80
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:37364865 original size:56 final size:56
Alignment explanation
Indices: 37364773--37364951 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
37364763 GAGATTGGCG
* * * *
37364773 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
* *
37364830 CTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
37364886 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
37364941 CTGAGTGTGCG
1 CTAAGTGTGCG
37364952 GGCTTAATAT
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
55 23 0.21
56 74 0.66
57 15 0.13
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:37370729 original size:12 final size:12
Alignment explanation
Indices: 37370712--37370747 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
37370702 TGTCACATGA
37370712 ATTAAATTAATT
1 ATTAAATTAATT
37370724 ATTAAATTAATT
1 ATTAAATTAATT
*
37370736 ATTAATTTAATT
1 ATTAAATTAATT
37370748 TAATTTGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTAAATTAATT
Found at i:37372761 original size:39 final size:39
Alignment explanation
Indices: 37372718--37372874 Score: 217
Period size: 39 Copynumber: 4.0 Consensus size: 39
37372708 CCGGACGTAT
* * *
37372718 TTCCAGCACGTAGCCTGCAGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
*
37372757 TTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
**
37372796 TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
* * *
37372835 TTCCAACATATACCCTGC-GAACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAG-ACCCTAAGTCCGGATATAA
37372874 T
1 T
37372875 CATCACTGAA
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 107 0.99
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
Found at i:37377329 original size:39 final size:40
Alignment explanation
Indices: 37377284--37377455 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
37377274 GCTCCTCGTT
* * *
37377284 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
37377324 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
37377363 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
37377403 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
37377443 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37377456 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:37377384 original size:40 final size:39
Alignment explanation
Indices: 37377286--37377508 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
37377276 TCCTCGTTCA
* * * *
37377286 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
37377325 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
37377364 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
37377404 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
37377444 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
37377485 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37377509 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:37377468 original size:80 final size:79
Alignment explanation
Indices: 37377284--37377508 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
37377274 GCTCCTCGTT
* * * * *
37377284 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
37377348 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
37377363 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
37377428 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
37377443 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
37377507 GA
63 GA
37377509 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:37377517 original size:41 final size:41
Alignment explanation
Indices: 37377440--37377517 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37377430 TTTGTATCTC
* * *
37377440 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37377481 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37377518 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37385308 original size:40 final size:40
Alignment explanation
Indices: 37385208--37385379 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
37385198 GCTCCTCGTT
* * *
37385208 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
37385248 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
37385287 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
37385327 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
37385367 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37385380 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:37385392 original size:80 final size:79
Alignment explanation
Indices: 37385208--37385422 Score: 227
Period size: 80 Copynumber: 2.7 Consensus size: 79
37385198 GCTCCTCGTT
* * *
37385208 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
37385273 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* * * * * *
37385287 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG
* *
37385352 AATTT-GTATCTCGCA
65 -ATTTAATAACTCGCA
* * * * * *
37385367 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGAC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGAC
37385423 TTGCCCGGAC
Statistics
Matches: 110, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
79 38 0.35
80 65 0.59
81 7 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
TTTAATAACTCGCA
Found at i:37391979 original size:39 final size:39
Alignment explanation
Indices: 37391936--37392089 Score: 220
Period size: 39 Copynumber: 3.9 Consensus size: 39
37391926 GACATATTTT
* *
37391936 CAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATTC
1 CAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTC
37391975 CAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTC
1 CAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTC
* *
37392014 CAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTC
1 CAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTC
* * * *
37392053 TAGCATATAGCCCGCAGAGCC-TAAGTCCGGATATAAT
1 CAGCACATAGCCTGCGGA-CCTTAAGTCCGGATATAAT
37392090 CATCACTGAA
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
39 103 0.98
40 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (39 bp):
CAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTC
Found at i:37391987 original size:78 final size:78
Alignment explanation
Indices: 37391920--37392064 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 78
37391910 GCGGGATTTT
* * * * *
37391920 AGCCCGGACATATTTTCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACATAG
1 AGCCCGGACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAG
37391985 CCTGCGGACCTTA
66 CCTGCGGACCTTA
* * * * *
37391998 AGTCCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTCTAGCATATAG
1 AGCCCGGACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAG
37392063 CC
66 CC
37392065 CGCAGAGCCT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 57 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
AGCCCGGACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAG
CCTGCGGACCTTA
Found at i:37400083 original size:39 final size:38
Alignment explanation
Indices: 37400022--37400175 Score: 209
Period size: 39 Copynumber: 4.0 Consensus size: 38
37400012 GACATATTTC
* * * *
37400022 CAGCACGTAGCCCGCGGACCTTAAGTCCGGTTATAATT
1 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
*
37400060 CATGCACATAGCCTGCGGACCTTAAGTCCGGATATAATT
1 CA-GCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
*
37400099 CCAGCACATAGCCTGCGGACCCTAAGTCCGAATATAATT
1 -CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
* *
37400138 CAAGAATATAGCCTGCGGACCCTAAGTCCGGATATAAT
1 C-AGCACATAGCCTGCGGACCCTAAGTCCGGATATAAT
37400176 CATCACTGAA
Statistics
Matches: 105, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 3 0.03
39 100 0.95
40 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (38 bp):
CAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATT
Found at i:37400125 original size:78 final size:78
Alignment explanation
Indices: 37400019--37400175 Score: 233
Period size: 78 Copynumber: 2.0 Consensus size: 78
37400009 CTGGACATAT
* * ** * * *
37400019 TTCCAGCACGTAGCCCGCGGACCTTAAGTCCGGTTATAATTCATGCACATAGCCTGCGGACCTTA
1 TTCCAGCACATAGCCCGCGGACCCTAAGTCCGAATATAATTCAAGAACATAGCCTGCGGACCCTA
37400084 AGTCCGGATATAA
66 AGTCCGGATATAA
* *
37400097 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATATAATTCAAGAATATAGCCTGCGGACCCTA
1 TTCCAGCACATAGCCCGCGGACCCTAAGTCCGAATATAATTCAAGAACATAGCCTGCGGACCCTA
37400162 AGTCCGGATATAA
66 AGTCCGGATATAA
37400175 T
1 T
37400176 CATCACTGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (78 bp):
TTCCAGCACATAGCCCGCGGACCCTAAGTCCGAATATAATTCAAGAACATAGCCTGCGGACCCTA
AGTCCGGATATAA
Found at i:37405512 original size:40 final size:40
Alignment explanation
Indices: 37405457--37405680 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
37405447 TATTCGGATG
*
37405457 ATATCCGGGCTAAGTCCCGAGGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
37405497 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
37405540 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
37405580 ATATTCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
37405620 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
37405660 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
37405681 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 13 0.08
40 110 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:37405603 original size:83 final size:80
Alignment explanation
Indices: 37405461--37405680 Score: 266
Period size: 83 Copynumber: 2.7 Consensus size: 80
37405451 CGGATGATAT
* * * * **
37405461 CCGGGCTAAGTCCCGAGGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTCA
37405526 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
37405544 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTCA
*
37405609 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
37405624 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATA-TCCGGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATTCGGGCTAAGTCCCGAAG
37405681 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 18 0.15
80 42 0.34
81 2 0.02
83 61 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:37410444 original size:40 final size:40
Alignment explanation
Indices: 37410396--37410662 Score: 471
Period size: 40 Copynumber: 6.7 Consensus size: 40
37410386 GCAAACACAT
* *
37410396 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37410436 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
** *
37410476 TTGCCTTCGGGTCACAGCCCGGATATATCAACTCGCATAG
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37410516 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37410556 TTGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37410596 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37410636 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
37410663 ATCCAATGCT
Statistics
Matches: 215, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:37418931 original size:40 final size:40
Alignment explanation
Indices: 37418886--37419191 Score: 533
Period size: 40 Copynumber: 7.7 Consensus size: 40
37418876 GCAAACACAT
* * *
37418886 TTGCCTTCAGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
37418926 TTGCCTTCGGGTCTTATCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
**
37418966 TTGCCTTCGGGTCACAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37419006 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAG
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37419046 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37419086 TTGCCTTCGGGT-TTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37419125 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37419165 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
37419192 ATCCAATGCT
Statistics
Matches: 253, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 39 0.15
40 214 0.85
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:37419169 original size:119 final size:120
Alignment explanation
Indices: 37418886--37419191 Score: 533
Period size: 119 Copynumber: 2.6 Consensus size: 120
37418876 GCAAACACAT
* * * *
37418886 TTGCCTTCAGGTCTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTATCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
37418951 TATCATCTCGCATAATTGCCTTCGGGTCACAGCCCGGATATATCAACTCGCATAA
66 TATCAACTCGCATAATTGCCTTCGGGTCACAGCCCGGATATATCAACTCGCATAA
*
37419006 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAGTTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
**
37419071 TATCAACTCGCATAATTGCCTTCGGGT-TTAGCCCGGATATATCAACTCGCATAA
66 TATCAACTCGCATAATTGCCTTCGGGTCACAGCCCGGATATATCAACTCGCATAA
37419125 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
37419190 TA
66 TA
37419192 ATCCAATGCT
Statistics
Matches: 177, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
119 91 0.51
120 86 0.49
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (120 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCAACTCGCATAATTGCCTTCGGGTCACAGCCCGGATATATCAACTCGCATAA
Found at i:37425864 original size:40 final size:40
Alignment explanation
Indices: 37425809--37426032 Score: 263
Period size: 40 Copynumber: 5.5 Consensus size: 40
37425799 TATTCGGATG
* * *
37425809 ATATCTGGGCTAAGTCTCGAGGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
37425849 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
37425892 ATA-CTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATC-CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
37425932 ATATCCGGGCTAAGTCCCAAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
37425972 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
37426012 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
37426033 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 13 0.08
40 108 0.68
41 2 0.01
42 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:37425955 original size:83 final size:80
Alignment explanation
Indices: 37425809--37426028 Score: 259
Period size: 83 Copynumber: 2.7 Consensus size: 80
37425799 TATTCGGATG
* * * * *
37425809 ATATCTGGGCTAAGTCTCGAGGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCAAAGGCA
**
37425874 TTTGTGCGAGTAGTTG-CT
66 TTCATGC---TAG-TGACT
*
37425892 ATA-CTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCAAAGGC
1 ATATC-CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCAAAGGC
37425956 ATTCATGCTAGTGACT
65 ATTCATGCTAGTGACT
* * *
37425972 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCC
37426029 GAAGATACTT
Statistics
Matches: 122, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
79 12 0.10
80 44 0.36
81 3 0.02
82 1 0.01
83 62 0.51
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCAAAGGCA
TTCATGCTAGTGACT
Found at i:37431912 original size:39 final size:39
Alignment explanation
Indices: 37431869--37432015 Score: 231
Period size: 39 Copynumber: 3.8 Consensus size: 39
37431859 TTCTAGCACG
* *
37431869 TAGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCATA
1 TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCATA
* * *
37431908 TAGCCTACGGACCTTAAGTCCGGATATAATTCCAGCACA
1 TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCATA
*
37431947 TAGCCTGCGGACCCTAAGTCCGAATATAATTCCAGCATA
1 TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCATA
*
37431986 TAGCCTGCAGACCCTAAGTCCGGATATAAT
1 TAGCCTGCGGACCCTAAGTCCGGATATAAT
37432016 CATCACTGAA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (39 bp):
TAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCATA
Found at i:37434462 original size:31 final size:31
Alignment explanation
Indices: 37434425--37434483 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
37434415 TTTCATTAGA
37434425 TCGATTACATTTTGTCCACTTAATTTATAGG
1 TCGATTACATTTTGTCCACTTAATTTATAGG
37434456 TCGATTACATTTTGTCCACTTAATTTAT
1 TCGATTACATTTTGTCCACTTAATTTAT
37434484 TAAAATTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.47
Consensus pattern (31 bp):
TCGATTACATTTTGTCCACTTAATTTATAGG
Found at i:37436187 original size:37 final size:37
Alignment explanation
Indices: 37436137--37436215 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37436127 TTATTACGAA
* * *
37436137 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37436174 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37436211 GTCTT
1 GTCTT
37436216 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37436421 original size:47 final size:47
Alignment explanation
Indices: 37436334--37436832 Score: 692
Period size: 47 Copynumber: 10.4 Consensus size: 47
37436324 CCTTTTGGGA
* * * * * * * *
37436334 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37436381 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37436428 CTTATCACGTATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37436475 CTTATCACATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37436522 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37436569 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37436616 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37436667 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
37436718 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37436767 CTTATTACATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37436814 CTTATCACATATATACACT
1 CTTATCACATATATACACT
37436833 CTCTTGGCTG
Statistics
Matches: 420, Mismatches: 28, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 272 0.65
48 1 0.00
49 58 0.14
50 1 0.00
51 88 0.21
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37436777 original size:43 final size:45
Alignment explanation
Indices: 37436678--37436818 Score: 228
Period size: 49 Copynumber: 3.0 Consensus size: 45
37436668 TTATTACATA
37436678 TATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 TATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
37436723 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 ----TATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
37436772 TACATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 T--ATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
37436819 CACATATATA
Statistics
Matches: 90, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
45 1 0.01
47 44 0.49
49 45 0.50
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (45 bp):
TATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:37444851 original size:28 final size:28
Alignment explanation
Indices: 37444813--37444922 Score: 150
Period size: 28 Copynumber: 4.0 Consensus size: 28
37444803 GCTGCCAGAG
* * *
37444813 CAGAT-ATTGTGACAGAGTCACCAGATA
1 CAGATAATTGTGGCAGAGCCACCAGAAA
*
37444840 CAGATAATTGTGGCAGGGCCACCAGAAA
1 CAGATAATTGTGGCAGAGCCACCAGAAA
* *
37444868 CAGATATTTATGGCAGAGCCACCAGAAA
1 CAGATAATTGTGGCAGAGCCACCAGAAA
*
37444896 CAGATATTTGTGGCAGAGCCACCAGAA
1 CAGATAATTGTGGCAGAGCCACCAGAA
37444923 CGCTTCCTCC
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 5 0.07
28 69 0.93
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (28 bp):
CAGATAATTGTGGCAGAGCCACCAGAAA
Found at i:37448859 original size:28 final size:28
Alignment explanation
Indices: 37448823--37448903 Score: 103
Period size: 28 Copynumber: 2.9 Consensus size: 28
37448813 CTGCCAGAAT
* * *
37448823 AGAT-ATTGTGACAGAGTCACCAGATAC
1 AGATAATTGTGGCAGAGCCACCAGAAAC
37448850 AGATAATTGTGGCA-AGGCCACCAGAAAC
1 AGATAATTGTGGCAGA-GCCACCAGAAAC
*
37448878 AGATATTTGTGGCAGAGCCACCAGAA
1 AGATAATTGTGGCAGAGCCACCAGAA
37448904 CGCTTCCTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 5 0.11
28 41 0.87
29 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.19
Consensus pattern (28 bp):
AGATAATTGTGGCAGAGCCACCAGAAAC
Found at i:37449067 original size:26 final size:26
Alignment explanation
Indices: 37449004--37449053 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
37448994 GTCAAAATCA
*
37449004 ACCTAGGGGTATAATGGTCATTTTGC
1 ACCTAGGGGTATAATGGTAATTTTGC
37449030 ACCTAGGGGTATAATGGTAATTTT
1 ACCTAGGGGTATAATGGTAATTTT
37449054 CATACTTAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (26 bp):
ACCTAGGGGTATAATGGTAATTTTGC
Found at i:37450171 original size:18 final size:18
Alignment explanation
Indices: 37450124--37450180 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
37450114 GGCTATAGAG
37450124 GAAAAGAAGAAGAAGAGAA
1 GAAAAGAAGAAG-AGAGAA
* *
37450143 -AATAGATGAAGAGAGAA
1 GAAAAGAAGAAGAGAGAA
*
37450160 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
37450178 GAA
1 GAA
37450181 TTGTCAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
17 6 0.19
18 26 0.81
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:37457867 original size:46 final size:46
Alignment explanation
Indices: 37457754--37457961 Score: 217
Period size: 46 Copynumber: 4.5 Consensus size: 46
37457744 GATATTTGGG
* *
37457754 CATCC-AAGCTCGTTGAGTTGAATCCAAGTTCACTTATGGATGCGAA
1 CATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
37457800 CTTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * *
37457846 CATCCGAACTCGTTGAGTTGAGCCCGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
* *
37457893 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * *
37457939 CCCCCGAGCTCTTTGAGTTGAGT
1 CATCCGAACTCGTTGAGTTGAGT
37457962 TTGAGCTCGC
Statistics
Matches: 134, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
43 4 0.03
45 2 0.01
46 89 0.66
47 33 0.25
48 2 0.01
50 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:37471675 original size:40 final size:40
Alignment explanation
Indices: 37471620--37471841 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
37471610 TATTCGGATG
*
37471620 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
37471660 ATATCCGGGCTAAGTCCCGAAAGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
37471700 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
37471740 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
37471780 GTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
37471820 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37471842 TCCTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 151 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37475124 original size:27 final size:27
Alignment explanation
Indices: 37475094--37475271 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37475084 ATATTGAGTC
* * * *
37475094 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37475121 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37475148 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37475176 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37475203 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37475230 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37475257 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37475272 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37475233 original size:82 final size:81
Alignment explanation
Indices: 37475115--37475270 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37475105 TGCTATATAA
* *
37475115 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37475180 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37475197 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37475261 CACTTAGTGC
65 CACTTAGTGC
37475271 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37475769 original size:12 final size:12
Alignment explanation
Indices: 37475752--37475777 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37475742 ATGGCATACT
37475752 TATGTATATATA
1 TATGTATATATA
37475764 TATGTATATATA
1 TATGTATATATA
37475776 TA
1 TA
37475778 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:37483216 original size:27 final size:27
Alignment explanation
Indices: 37483186--37483363 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37483176 ATATTGAGTC
* * * *
37483186 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37483213 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37483240 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37483268 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37483295 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37483322 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37483349 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37483364 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37483325 original size:82 final size:81
Alignment explanation
Indices: 37483207--37483362 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37483197 TGCTATATAA
* *
37483207 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37483272 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37483289 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37483353 CACTTAGTGC
65 CACTTAGTGC
37483363 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37485481 original size:27 final size:27
Alignment explanation
Indices: 37485450--37485627 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37485440 TAAATTGTAC
37485450 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37485477 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37485503 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37485531 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37485559 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37485586 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37485613 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37485628 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37485564 original size:82 final size:81
Alignment explanation
Indices: 37485451--37485606 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37485441 AAATTGTACA
* *
37485451 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37485515 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37485532 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37485597 TGCGAGTTGA
65 TGCGAATTGA
37485607 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37485618 original size:82 final size:81
Alignment explanation
Indices: 37485447--37485627 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37485437 GATTAAATTG
* *
37485447 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37485512 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37485528 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37485592 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37485610 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37485628 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37493609 original size:26 final size:27
Alignment explanation
Indices: 37493523--37493692 Score: 152
Period size: 26 Copynumber: 6.4 Consensus size: 27
37493513 AATTGTACAG
37493523 ACTAAGTGTGCG-ATTGACTATGTTG-
1 ACTAAGTGTGCGAATTGACTATGTTGC
* * *
37493548 ACTAAGTGTGCGAAATGAATATGATGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
* *
37493575 ACTAAGTGTGCGAATTGACCATG-CGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
* *
37493601 ACTAAGTGTGCGAGTTTGACTATGTAGC
1 ACTAAGTGTGCGA-ATTGACTATGTTGC
* * * *
37493629 ACT-AGTGTGCGATTTGATTACGTAGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
* * * *
37493655 ACT-AGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGAATTGACTATGTTGC
*
37493681 ACTGAGTGTGCG
1 ACTAAGTGTGCG
37493693 GACTCAATAT
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
25 12 0.10
26 63 0.50
27 45 0.36
28 5 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
ACTAAGTGTGCGAATTGACTATGTTGC
Found at i:37493636 original size:53 final size:54
Alignment explanation
Indices: 37493523--37493692 Score: 172
Period size: 53 Copynumber: 3.2 Consensus size: 54
37493513 AATTGTACAG
* **
37493523 ACTAAGTGTGCG-ATTGACTATGTTG-ACTAAGTGTGCGAAATGAATATG-ATGC
1 ACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGTA-GC
* * *
37493575 ACTAAGTGTGCGAATTGACCATG-CGCACTAAGTGTGCGAGTTTGACTATGTAGC
1 ACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAG-TTGAATATGTAGC
* * * * *
37493629 ACT-AGTGTGCGATTTGATTACGTAGCACT-AGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGTAGC
*
37493681 ACTGAGTGTGCG
1 ACTAAGTGTGCG
37493693 GACTCAATAT
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
52 27 0.27
53 55 0.55
54 17 0.17
55 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (54 bp):
ACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGTAGC
Found at i:37495846 original size:43 final size:43
Alignment explanation
Indices: 37495780--37495863 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
37495770 ATCAGGAATT
* *
37495780 GGTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTA
1 GGTTAGGTATCAAGTTAGAAAAGACATCAAATTAGTTGCCTTA
*
37495823 GGTTAGGTATCAAGTTGGAAAAGACATCAAATTAGTTGCCT
1 GGTTAGGTATCAAGTTAGAAAAGACATCAAATTAGTTGCCT
37495864 NNNNNNNNNN
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (43 bp):
GGTTAGGTATCAAGTTAGAAAAGACATCAAATTAGTTGCCTTA
Found at i:37507163 original size:42 final size:42
Alignment explanation
Indices: 37507106--37507253 Score: 129
Period size: 42 Copynumber: 3.5 Consensus size: 42
37507096 TAGGGTTATG
* * * *
37507106 TGTGATTTCGTGTAAGACGATTTTTTAGATATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATGTTTGAGACATGGCATCGATA
* *
37507148 TGTGATTTTGTGTAAGACCATGTTTGGGACATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATGTTTGAGACATGGCATCGATA
* ** * *
37507190 TGAGACATCGTGTAAGACCATAG-TTG-GGCTATCGGCACCGATA
1 TGTGATTTCGTGTAAGACCAT-GTTTGAGAC-AT-GGCATCGATA
** *
37507233 TGTGATCCCATGTAAGACCAT
1 TGTGATTTCGTGTAAGACCAT
37507254 ATCTGGGATA
Statistics
Matches: 86, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
41 2 0.02
42 58 0.67
43 26 0.30
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATGTTTGAGACATGGCATCGATA
Found at i:37508719 original size:48 final size:48
Alignment explanation
Indices: 37508663--37508993 Score: 360
Period size: 48 Copynumber: 6.9 Consensus size: 48
37508653 ACTAGGGTTG
* * *
37508663 TGAGAGCTAGTGTAAGATCATATCTGGGACATGGTATCAGCCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
37508711 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CCTCGATA
* * * *
37508759 TGTGAGCTAGTGTAAGACCATGTCTAGGACATTGCATCAGCCTTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
* * * * * * * * *
37508807 TGTGAGCCAATGAAAGACCATGTTTGGAACATGGCATCGGCATTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
** * *
37508855 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCAACA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
* * * * * * *
37508903 TGTGGGCTAGTGTAAAACCATGTTTGGAACATGGCATGAGGAC-CGATATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA-GCCTCG--ATA
*
37508953 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
37508994 ATCTGACCCT
Statistics
Matches: 233, Mismatches: 45, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
47 1 0.00
48 194 0.83
49 4 0.02
50 34 0.15
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
Found at i:37515565 original size:55 final size:55
Alignment explanation
Indices: 37515504--37515680 Score: 237
Period size: 55 Copynumber: 3.2 Consensus size: 55
37515494 ATATTAAGTC
* * * *
37515504 CGCACACTCAGTGCTATATAATCAACTCGCGCACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
37515559 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
37515614 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
37515670 CGCACACTTAG
1 CGCACACTTAG
37515681 CGCCAATCTC
Statistics
Matches: 108, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
55 92 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:37515568 original size:28 final size:27
Alignment explanation
Indices: 37515504--37515655 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
37515494 ATATTAAGTC
* *
37515504 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
37515531 CGCGCACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
37515559 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
37515586 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
37515614 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
37515641 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37515656 GCACAATTTA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37520186 original size:46 final size:46
Alignment explanation
Indices: 37520011--37520180 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
37520001 TGTAACCCAC
* * *
37520011 CCATAGGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
37520057 CCATAAATGAACTCGGACTCAAGTCAACAAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * * *
37520103 ACATCTCTCGAACTCGGGCTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
37520150 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
37520181 TTTGGATGCT
Statistics
Matches: 96, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 59 0.61
47 28 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:37520205 original size:46 final size:45
Alignment explanation
Indices: 37520112--37520197 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
37520102 TACATCTCTC
* * *
37520112 GAACTCGGGCTCAACTCAACGAGTTTGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTGGA-ATGCGCAACCATAAGT
*
37520158 GAACTCGGACTCAACTCAACGAGTTTGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTTGGAATGCGCAACCAT
37520198 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTTGGAATGCGCAACCATAAGT
Found at i:37521898 original size:57 final size:57
Alignment explanation
Indices: 37521810--37521923 Score: 192
Period size: 57 Copynumber: 2.0 Consensus size: 57
37521800 AGGAAGACTT
** *
37521810 CTGGCTTCGTTGTTTAGAGCCTCTTGCTCTACCCAAATATGCTACCGATGAAGTGGA
1 CTGGCTTCACTGTTTAGAGCCTCTTGCTCTACCCAAATATCCTACCGATGAAGTGGA
*
37521867 CTGGCTTCACTGTTTAGAGCCTCTTGCTCTACCCGAATATCCTACCGATGAAGTGGA
1 CTGGCTTCACTGTTTAGAGCCTCTTGCTCTACCCAAATATCCTACCGATGAAGTGGA
37521924 GCGTTCATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (57 bp):
CTGGCTTCACTGTTTAGAGCCTCTTGCTCTACCCAAATATCCTACCGATGAAGTGGA
Found at i:37526802 original size:48 final size:48
Alignment explanation
Indices: 37526723--37527050 Score: 338
Period size: 48 Copynumber: 6.8 Consensus size: 48
37526713 ACTAGGTTTG
* * **
37526723 TGAGAGCTAGTGTAAGACCATGTTTGAGACATGGCATCAACCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
* *
37526771 TGAGAGCTAGTGTAAGACTATGTATGGGACATGGCATCGGCCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
* * * *
37526819 TGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
* * * * * * * *
37526867 TGTGAGCCACTATAAGACCATGTTTGGAACATGGCATCGGCATTGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
* *
37526915 TAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC--GATA
* * * * *
37526965 TG-G-GCTAGTGTAAAACCATGTTTGGAACATGGCATGAGGAC-CGATATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-CGGCCTCG--ATA
* * *
37527013 TGATAGCCAGTGTAAAACCATGTCTGGGACATGGCATC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
37527051 AGCATCTTAC
Statistics
Matches: 234, Mismatches: 39, Indels: 13
0.82 0.14 0.05
Matches are distributed among these distances:
48 197 0.84
49 4 0.02
50 33 0.14
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
Found at i:37526899 original size:96 final size:96
Alignment explanation
Indices: 37526726--37527050 Score: 373
Period size: 96 Copynumber: 3.4 Consensus size: 96
37526716 AGGTTTGTGA
* * * ** * *
37526726 GAGCTAGTGTAAGACCATGTTTGAGACATGGCATCAACCTCGATATGAGAGCTAGTGTAAGACTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCA
* * *
37526791 TGTATGGGACATGGCATCGGCCTCGATATGT
66 TGTTTGGAACATGGCATCGGCCTCGATATAT
* * * * *
37526822 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTTGATATGTGAGCCACTATAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCA
* * *
37526887 TGTTTGGAACATGGCATCGGCATTGATATAA
66 TGTTTGGAACATGGCATCGGCCTCGATATAT
* * * * * *
37526918 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATATGGGCTAGTGTAAAACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCA
* *
37526983 TGTTTGGAACATGGCATGAGGAC-CGATATAT
66 TGTTTGGAACATGGCAT-CGGCCTCGATATAT
*
37527014 GATAGCCAGTGTAAAACCATGTCTGGGACATGGCATC
1 G--AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
37527051 AGCATCTTAC
Statistics
Matches: 190, Mismatches: 36, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
96 156 0.82
97 2 0.01
98 32 0.17
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAGACCA
TGTTTGGAACATGGCATCGGCCTCGATATAT
Found at i:37527011 original size:144 final size:144
Alignment explanation
Indices: 37526735--37527056 Score: 373
Period size: 144 Copynumber: 2.2 Consensus size: 144
37526725 AGAGCTAGTG
* * * *
37526735 TAAGACCATGTTT-GAGACATGGCATCAACCTCGATATGAGAGCTAGTGTAAGACTATGTATGGG
1 TAAGACCATGTTTGGA-ACATGGCATCAGCATCGATATAAGAGCTAGTGTAAGACCATGTATGGG
* * * * *
37526799 ACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTTG
65 ACATGGCATCGGCCTCAACATATGAGCCAGTGTAAAACCATGTCTAGGACATGGCATAGGCC-TG
*
37526864 ATATGTG-AGCCACTA
129 ATATATGAAGCCACTA
* * *
37526879 TAAGACCATGTTTGGAACATGGCATCGGCATTGATATAAGAGCTAGTGTAAGACCATGTCTGGGA
1 TAAGACCATGTTTGGAACATGGCATCAGCATCGATATAAGAGCTAGTGTAAGACCATGTATGGGA
* * *
37526944 CATGGCATCGGCCTCAACATATGGGCTAGTGTAAAACCATGT-TTGGAACATGGCATGAGGACC-
66 CATGGCATCGGCCTCAACATATGAGCCAGTGTAAAACCATGTCTAGG-ACATGGCAT-AGG-CCT
* *
37527007 GATATATGATAGCCAGTG
128 GATATATGA-AGCCACTA
* * *
37527025 TAAAACCATGTCTGGGACATGGCATCAGCATC
1 TAAGACCATGTTTGGAACATGGCATCAGCATC
37527057 TTACCCTTTT
Statistics
Matches: 149, Mismatches: 23, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
143 3 0.02
144 107 0.72
145 4 0.03
146 35 0.23
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (144 bp):
TAAGACCATGTTTGGAACATGGCATCAGCATCGATATAAGAGCTAGTGTAAGACCATGTATGGGA
CATGGCATCGGCCTCAACATATGAGCCAGTGTAAAACCATGTCTAGGACATGGCATAGGCCTGAT
ATATGAAGCCACTA
Found at i:37529322 original size:26 final size:27
Alignment explanation
Indices: 37529293--37529346 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
37529283 TCACACAAGT
*
37529293 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
37529319 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
37529346 T
1 T
37529347 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:37529401 original size:26 final size:27
Alignment explanation
Indices: 37529347--37529491 Score: 157
Period size: 27 Copynumber: 5.4 Consensus size: 27
37529337 GGGGCAAAAT
* ** * *
37529347 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCTTACAGGGGTATTTC
* *
37529374 GGTAATTCTACCGTAC-TGGGTATTTC
1 GGTAATTCTACCTTACAGGGGTATTTC
* *
37529400 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCTTACAGGGGTATTTC
** *
37529427 AATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCTTACAGGGGTATTTC
*
37529454 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCTTACAGGGGTATTTC
*
37529481 AGTAATTCTAC
1 GGTAATTCTAC
37529492 AACTTATCCA
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 23 0.23
27 76 0.77
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCTTACAGGGGTATTTC
Found at i:37529465 original size:54 final size:53
Alignment explanation
Indices: 37529376--37529491 Score: 187
Period size: 54 Copynumber: 2.2 Consensus size: 53
37529366 GGTATCTCGG
*
37529376 TAATTCTACCGTACTGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAA
1 TAATTCTACCGTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAA
* * *
37529429 TAATTCTACCTTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAG
1 TAATTCTACCGTAC-AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAA
37529483 TAATTCTAC
1 TAATTCTAC
37529492 AACTTATCCA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 13 0.22
54 45 0.78
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (53 bp):
TAATTCTACCGTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAA
Found at i:37536189 original size:27 final size:26
Alignment explanation
Indices: 37536142--37536192 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
37536132 CGAGGCTGCC
*
37536142 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
37536168 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
37536193 TTGCTGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:37536858 original size:27 final size:27
Alignment explanation
Indices: 37536803--37536859 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
37536793 TACGCACGAG
* *
37536803 GGGCAAAATAGTCATTTAACACCATAA
1 GGGCAAAATAGTAATTTAACACCACAA
* * *
37536830 GGGCAAAATGGTAATTTTACCCCACAA
1 GGGCAAAATAGTAATTTAACACCACAA
37536857 GGG
1 GGG
37536860 TATCTCAGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (27 bp):
GGGCAAAATAGTAATTTAACACCACAA
Found at i:37536870 original size:27 final size:27
Alignment explanation
Indices: 37536840--37536984 Score: 166
Period size: 27 Copynumber: 5.4 Consensus size: 27
37536830 GGGCAAAATG
* * *
37536840 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37536867 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37536893 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* * * *
37536921 ATAGTTTTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
37536948 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
37536975 GTAATTCTAC
1 GTAATTCTAC
37536985 AACTTATCCA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.99
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:37548658 original size:46 final size:46
Alignment explanation
Indices: 37548608--37548783 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
37548598 TGATTGAGCA
*
37548608 TCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37548654 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
37548699 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
37548747 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37548784 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37548764 original size:93 final size:93
Alignment explanation
Indices: 37548605--37548776 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
37548595 GGATGATTGA
* * *
37548605 GCATCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACGTCCGAACTCGTTGAGT
37548670 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
37548698 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACGTCC-GAACTCGTTGAG
37548762 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
37548777 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37551929 original size:16 final size:16
Alignment explanation
Indices: 37551910--37551940 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37551900 CAAAAGACAA
*
37551910 AATGCCGAAAAGCCAG
1 AATGCCAAAAAGCCAG
37551926 AATGCCAAAAAGCCA
1 AATGCCAAAAAGCCA
37551941 AAAGTTTGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.26, G:0.19, T:0.06
Consensus pattern (16 bp):
AATGCCAAAAAGCCAG
Found at i:37552185 original size:28 final size:28
Alignment explanation
Indices: 37552174--37552282 Score: 114
Period size: 28 Copynumber: 3.9 Consensus size: 28
37552164 ATTTGGACCG
*
37552174 GATGGGCCATATAAATGAGATTGGGTCT
1 GATGGGCCATATAAATGAGATTGGGCCT
* *
37552202 AATGGGCCATATGAATGAGATTGGGCCT
1 GATGGGCCATATAAATGAGATTGGGCCT
* *
37552230 GATGGGCCATTTGAACATGA-ATTAGGCC-
1 GATGGGCCATAT-AA-ATGAGATTGGGCCT
* *
37552258 GAGTAGACCATATAAATGAGATTGG
1 GA-TGGGCCATATAAATGAGATTGG
37552283 ACCTAGTGGG
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
27 4 0.06
28 43 0.65
29 15 0.23
30 4 0.06
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (28 bp):
GATGGGCCATATAAATGAGATTGGGCCT
Found at i:37559853 original size:24 final size:23
Alignment explanation
Indices: 37559820--37559871 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
37559810 AGTAGATCAG
*
37559820 CAAAAGCCAAAATGCCGAAAAGC
1 CAAAAGCCAAAAAGCCGAAAAGC
*
37559843 CAAAATGCCAAAAAGCCGAAATGC
1 CAAAA-GCCAAAAAGCCGAAAAGC
37559867 CAAAA
1 CAAAA
37559872 AGCCGAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.54, C:0.25, G:0.15, T:0.06
Consensus pattern (23 bp):
CAAAAGCCAAAAAGCCGAAAAGC
Found at i:37559854 original size:8 final size:8
Alignment explanation
Indices: 37559820--37559871 Score: 63
Period size: 8 Copynumber: 6.6 Consensus size: 8
37559810 AGTAGATCAG
37559820 CAAAA-GC
1 CAAAATGC
37559827 CAAAATGC
1 CAAAATGC
37559835 CGAAAA-GC
1 C-AAAATGC
37559843 CAAAATGC
1 CAAAATGC
*
37559851 CAAAAAGC
1 CAAAATGC
*
37559859 CGAAATGC
1 CAAAATGC
37559867 CAAAA
1 CAAAA
37559872 AGCCGAAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
7 9 0.24
8 25 0.66
9 4 0.11
ACGTcount: A:0.54, C:0.25, G:0.15, T:0.06
Consensus pattern (8 bp):
CAAAATGC
Found at i:37559879 original size:16 final size:16
Alignment explanation
Indices: 37559821--37559875 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
37559811 GTAGATCAGC
*
37559821 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCA
37559837 AAAAGCCAAAATGCCA
1 AAAAGCCAAAATGCCA
*
37559853 AAAAGCCGAAATGCCA
1 AAAAGCCAAAATGCCA
37559869 AAAAGCC
1 AAAAGCC
37559876 GAAAGTTTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.53, C:0.25, G:0.16, T:0.05
Consensus pattern (16 bp):
AAAAGCCAAAATGCCA
Found at i:37560172 original size:29 final size:29
Alignment explanation
Indices: 37560091--37560237 Score: 167
Period size: 29 Copynumber: 5.2 Consensus size: 29
37560081 ATGACCATGA
* *
37560091 ATAT-AATGTGATTTGGGCC-AGATGGGTC
1 ATATGAATGTGAATTGGGCCTA-ATGGGCC
* *
37560119 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
37560147 ATATGAATGTGAATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* *
37560176 ATATGAATGTAAATTGGGCCAAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * * *
37560205 ATATAAATGAG-ATTGGGCCTAGTAGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
37560233 ATATG
1 ATATG
37560238 CAGGTATGTA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
28 44 0.43
29 58 0.57
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTAATGGGCC
Found at i:37560224 original size:57 final size:57
Alignment explanation
Indices: 37560103--37560237 Score: 166
Period size: 57 Copynumber: 2.4 Consensus size: 57
37560093 ATAATGTGAT
* * * * * *
37560103 TTGGGCC-AGATGGGTCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTA-ATGGGCCATATGAATGAAATTGGGCCAAATGGGCCATATAAATGAGAA
37560160 TTGGGCCTAATGGGCCATATGAATGTAAATTGGGCCAAATGGGCCATATAAATGAG-A
1 TTGGGCCTAATGGGCCATATGAATG-AAATTGGGCCAAATGGGCCATATAAATGAGAA
* *
37560217 TTGGGCCTAGTAGGCCATATG
1 TTGGGCCTAATGGGCCATATG
37560238 CAGGTATGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
57 41 0.60
58 27 0.40
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (57 bp):
TTGGGCCTAATGGGCCATATGAATGAAATTGGGCCAAATGGGCCATATAAATGAGAA
Found at i:37564210 original size:24 final size:24
Alignment explanation
Indices: 37564163--37564210 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
37564153 AGTTTCAAAC
* *
37564163 TGTTGTCCAAAAATTCATATTTAA
1 TGTTGTCCAAAAATTAATAATTAA
* *
37564187 TGTTGTTCAAATATTAATAATTAA
1 TGTTGTCCAAAAATTAATAATTAA
37564211 AGTTAACTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (24 bp):
TGTTGTCCAAAAATTAATAATTAA
Found at i:37568919 original size:27 final size:27
Alignment explanation
Indices: 37568885--37569110 Score: 247
Period size: 27 Copynumber: 8.3 Consensus size: 27
37568875 TTTCACTGTT
37568885 TGACTGTTTTGCCCTTATGTGGTAAAA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* * * *
37568912 TGATTGTTTTACCCTTATGAGGTAAGA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
*
37568939 TGACTGTTTTGCCCTTATGAGGTAAAA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* *
37568966 TGATTGTTTTG-CCTATATGTGGTAAGA
1 TGACTGTTTTGCCCT-TATGTGGTAAAA
* * * * *
37568993 TGATTATTTTTCCCTTATATGGTAGAA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* * * *
37569020 TGACTATTTTTCTCTTATGTGGTAAGA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
*
37569047 TGACTGTTTTGCCCATATGTGGTAAAA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
* * *
37569074 TGACTATTTTGCCCTTATATGGTAAGA
1 TGACTGTTTTGCCCTTATGTGGTAAAA
37569101 TGACTAGTTT
1 TGACT-GTTT
37569111 ACCCTATTTG
Statistics
Matches: 166, Mismatches: 30, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.02
27 157 0.95
28 6 0.04
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (27 bp):
TGACTGTTTTGCCCTTATGTGGTAAAA
Found at i:37569024 original size:81 final size:81
Alignment explanation
Indices: 37568885--37569110 Score: 287
Period size: 81 Copynumber: 2.8 Consensus size: 81
37568875 TTTCACTGTT
*
37568885 TGACTGTTTTGCCCT-TATGTGGTAAAATGATTGTTTTACCCTTATGA-GGTAAGATGACTGTTT
1 TGACTGTTTTG-CCTATATGTGGTAAAATGATTATTTTACCCTTAT-ATGGTAAGATGACTGTTT
37568948 TGCCCTTATGAGGTAAAA
64 TGCCCTTATGAGGTAAAA
* * * *
37568966 TGATTGTTTTGCCTATATGTGGTAAGATGATTATTTTTCCCTTATATGGT-AGAATGACTATTTT
1 TGACTGTTTTGCCTATATGTGGTAAAATGATTATTTTACCCTTATATGGTAAG-ATGACTGTTTT
* * * *
37569030 TCTCTTATGTGGTAAGA
65 GCCCTTATGAGGTAAAA
* * *
37569047 TGACTGTTTTGCCCATATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAGATGACTAGTTT
1 TGACTGTTTTGCCTATATGTGGTAAAATGATTATTTTACCCTTATATGGTAAGATGACT-GTTT
37569111 ACCCTATTTG
Statistics
Matches: 125, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
80 6 0.05
81 114 0.91
82 5 0.04
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (81 bp):
TGACTGTTTTGCCTATATGTGGTAAAATGATTATTTTACCCTTATATGGTAAGATGACTGTTTTG
CCCTTATGAGGTAAAA
Found at i:37569461 original size:18 final size:18
Alignment explanation
Indices: 37569438--37569501 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
37569428 ACTTGTATAC
*
37569438 TGTTACTGCATTGATTAT
1 TGTTACTGCACTGATTAT
*
37569456 TGTTACTGCACTGATTAC
1 TGTTACTGCACTGATTAT
37569474 TGTTACTGCACT-ATTTAT
1 TGTTACTGCACTGA-TTAT
37569492 TGTTACTGCA
1 TGTTACTGCA
37569502 ATGGGCCAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
17 1 0.02
18 41 0.98
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.45
Consensus pattern (18 bp):
TGTTACTGCACTGATTAT
Found at i:37573841 original size:108 final size:110
Alignment explanation
Indices: 37573697--37573897 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
37573687 ATCCTTTTGA
* * *
37573697 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
37573760 -TGCCATGCTTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
37573805 AACTTATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
37573870 TGTCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
37573898 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTATTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:37573852 original size:55 final size:51
Alignment explanation
Indices: 37573697--37573904 Score: 195
Period size: 55 Copynumber: 3.8 Consensus size: 51
37573687 ATCCTTTTGA
*
37573697 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGT-TTGACATGGTCTTACAT-GTATCCTTGCCTTATG
* * *
37573750 AACTCACCAATGCCATGCTTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATG-TTTGACATGGTCTTACAT-GTATCC-TTGCCTTAT-G
* *
37573804 TAACTTATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGT-TTGACATGGTCTTACATG-TATCCTTGCCTTATG
* * *
37573857 AAACCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -AA-CTTACCAA-TGCCATG-TTTGACATGGTCTTACAT-GTATCCTT
37573905 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
52 2 0.02
53 46 0.36
54 11 0.09
55 67 0.52
56 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (51 bp):
AACTTACCAATGCCATGTTTGACATGGTCTTACATGTATCCTTGCCTTATG
Found at i:37576496 original size:140 final size:140
Alignment explanation
Indices: 37576327--37576876 Score: 715
Period size: 140 Copynumber: 4.0 Consensus size: 140
37576317 AATATGATTA
* * *
37576327 ATATATGAATTTTATTCATACAAAATATTAATTGTATATATTTTGCCAAATTTATTAATATAAAT
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
* *
37576392 AGTTATATTAATTAATTTTGGTCAAAATATAAAACACATGGAAATTAATATTCTTTTTGAAAGAA
66 AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGAAAGAA
37576457 TATAATTAAT
131 TATAATTAAT
* * * * *
37576467 ATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTATCGAATATATTAATATAAAT
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
* * * * ** *
37576532 AGTGATATTAATTAATTTCGGTAAAAAAATAAAAGACCTAAAAATTAATATTC-TTTTGAAAAAA
66 AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGAAAGAA
*
37576596 TATAACTAAT
131 TATAATTAAT
*
37576606 ATATATGAATTTGATTCGTACAAAATATTAATTGTATATATTTTACCAAA--T-TT-ATATAAAC
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
** * * * * * *
37576667 AGTTATACGAAATAATTTTGGTCAAAACATTAAAGATATGGAAATTAATATTCTTTTGGAAAGAA
66 AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGAAAGAA
37576732 TATAATT-A-
131 TATAATTAAT
*
37576740 ATATATGAATTTGATTCATACAAAATATTAATTGTATATAGTTTACCAAATTTATTAATATAAAC
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
* * * *
37576805 ATTTATATTAATGAATTTCGGGCAAAATATAAAAGACAT-GAATATTAAT-TGT-GTTTTGAAAA
66 AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAA-ATTAATAT-TCTTTTTG-AAA
37576867 GAATATAATT
128 GAATATAATT
37576877 CATTTTTCTA
Statistics
Matches: 352, Mismatches: 50, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
134 48 0.14
135 49 0.14
136 18 0.05
137 11 0.03
138 57 0.16
139 65 0.18
140 104 0.30
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (140 bp):
ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAC
AGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGAAAGAA
TATAATTAAT
Found at i:37576839 original size:273 final size:279
Alignment explanation
Indices: 37576327--37576874 Score: 777
Period size: 273 Copynumber: 2.0 Consensus size: 279
37576317 AATATGATTA
* * *
37576327 ATATATGAATTTTATTCATACAAAATATTAATTGTATATATTTTGCCAAATTTATTAATATAAAT
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAA-TTATTAATATAAAC
** * * *
37576392 AGTTATATTAATTAATTTTGGTCAAAATATAAAACACATGGAAATTAATATTCTTTTTGAAAGAA
65 AGTTATACGAAATAATTTTGGTCAAAACATAAAACACATGGAAATTAATATTCTTTTGGAAAGAA
* * *
37576457 TATAATTAATATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTATCGAATATAT
130 TATAATTAATATATATGAATTTGATCCATACAAAATATTAATTGTATATAGTTTACCAAATATAT
* * * *
37576522 TAATATAAATAGTGATATTAATTAATTTCGGTAAAAAAATAAAAGACCTAAAAATTAATAT-TCT
195 TAATATAAACAGTGATATTAATGAATTTCGGGAAAAAAATAAAAGACATAAAAATTAAT-TGTCT
37576586 TTTGAAAA-AATATAACTAAT
259 TTTGAAAAGAATATAACTAAT
*
37576606 ATATATGAATTTGATTCGTACAAAATATTAATTGTATATATTTTACCAAA-T-TT-ATATAAACA
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTATTAATATAAACA
* * *
37576668 GTTATACGAAATAATTTTGGTCAAAACATTAAAGATATGGAAATTAATATTCTTTTGGAAAGAAT
66 GTTATACGAAATAATTTTGGTCAAAACATAAAACACATGGAAATTAATATTCTTTTGGAAAGAAT
* *
37576733 ATAATT-A-ATATATGAATTTGATTCATACAAAATATTAATTGTATATAGTTTACCAAATTTATT
131 ATAATTAATATATATGAATTTGATCCATACAAAATATTAATTGTATATAGTTTACCAAATATATT
* * * * * * *
37576796 AATATAAACATTTATATTAATGAATTTCGGGCAAAATATAAAAGACATGAATATTAATTGTGTTT
196 AATATAAACAGTGATATTAATGAATTTCGGGAAAAAAATAAAAGACATAAAAATTAATTGTCTTT
37576861 TGAAAAGAATATAA
261 TGAAAAGAATATAA
37576875 TTCATTTTTC
Statistics
Matches: 239, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
272 1 0.00
273 109 0.46
274 8 0.03
275 71 0.30
276 2 0.01
277 1 0.00
279 47 0.20
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (279 bp):
ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTATTAATATAAACA
GTTATACGAAATAATTTTGGTCAAAACATAAAACACATGGAAATTAATATTCTTTTGGAAAGAAT
ATAATTAATATATATGAATTTGATCCATACAAAATATTAATTGTATATAGTTTACCAAATATATT
AATATAAACAGTGATATTAATGAATTTCGGGAAAAAAATAAAAGACATAAAAATTAATTGTCTTT
TGAAAAGAATATAACTAAT
Found at i:37576943 original size:75 final size:75
Alignment explanation
Indices: 37576858--37576999 Score: 205
Period size: 75 Copynumber: 1.9 Consensus size: 75
37576848 ATTAATTGTG
* * * *
37576858 TTTTGAAAAGAATATAATTCATTTTTCTAACTTTCTATTTGTCTTCTCTATGAATAAAG-GAATA
1 TTTTGAAAAGAATATAATTCATCTTTCTAACTTTCCATTTGCCTTCTATATGAAT-AAGTGAATA
37576922 ATCCTATATTC
65 ATCCTATATTC
* * *
37576933 TTTTGGAAAGAATATAATTCCTCTTTCTAACTTTCCATTTGCCTTCTATATTAATAAGTGAATAA
1 TTTTGAAAAGAATATAATTCATCTTTCTAACTTTCCATTTGCCTTCTATATGAATAAGTGAATAA
37576998 TC
66 TC
37577000 TTAGTTTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 3 0.05
75 56 0.95
ACGTcount: A:0.32, C:0.15, G:0.08, T:0.44
Consensus pattern (75 bp):
TTTTGAAAAGAATATAATTCATCTTTCTAACTTTCCATTTGCCTTCTATATGAATAAGTGAATAA
TCCTATATTC
Found at i:37587499 original size:47 final size:47
Alignment explanation
Indices: 37587445--37587917 Score: 669
Period size: 47 Copynumber: 10.1 Consensus size: 47
37587435 TTAGGATTTT
** * *
37587445 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37587492 ATGTGATGAATATGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37587539 ATGTGATGAATGTGAACATGCGTATGTGTGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37587586 ATGTGATGAATGTGAACATGCATATATGTGACAAGGCTGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
37587633 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
37587680 ATGTGATGAAGGTGAACATGCATATGTGTGATAAGGTCGAATGACAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37587727 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
37587774 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
37587821 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
37587868 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
37587915 ATG
1 ATG
37587918 CAAAATGTGT
Statistics
Matches: 387, Mismatches: 38, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
47 384 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:37587874 original size:22 final size:22
Alignment explanation
Indices: 37587799--37587874 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
37587789 ACATGCATAT
*
37587799 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
37587821 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
37587845 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
37587868 ATGTGAT
1 ATGTGAT
37587875 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:37587947 original size:46 final size:46
Alignment explanation
Indices: 37587891--37588027 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
37587881 GGAAGTGTAT
*
37587891 ATATGTGGTAAAGCCGAATGGCTAATGCAAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
37587937 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
37587983 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATGTGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
37588028 TGTATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:37589576 original size:40 final size:40
Alignment explanation
Indices: 37589524--37589878 Score: 480
Period size: 40 Copynumber: 8.9 Consensus size: 40
37589514 GTTATATATG
* *
37589524 ATCCAGGCTAAGTCCCGAAGAGCATACGTGCTAGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
37589564 ATCCGGGCTAAGTCCCGAAGAGCATA-GGGACTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTG-CTGGTGTTAT
*
37589604 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * * *
37589644 CTCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
37589684 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * * *
37589724 ATCCGGGCTAAGTCTCGCAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * * *
37589764 ATCCGGTCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTA-
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * * *
37589803 ATCAGGGTTAAGTCCCGAAGAGCATTCGTACTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* *
37589843 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTG
37589879 ATGTGTATTC
Statistics
Matches: 280, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
39 35 0.12
40 243 0.87
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
Found at i:37593889 original size:47 final size:47
Alignment explanation
Indices: 37593835--37594260 Score: 611
Period size: 47 Copynumber: 9.1 Consensus size: 47
37593825 TTAGGATTTT
* ** * *
37593835 ATGTGATGAATGCGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37593882 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
37593929 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
37593976 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37594023 ATGTGATGAAGGTGAACATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37594070 ATGTGATGAATGTGAACATGCGTATCTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
37594117 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
37594164 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
37594211 ATGTGATGAACGTGGAA-GTGTATATATATGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
37594258 ATG
1 ATG
37594261 CAAAATGTGT
Statistics
Matches: 341, Mismatches: 37, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
47 338 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:37594073 original size:24 final size:24
Alignment explanation
Indices: 37594005--37594074 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
37593995 GCATATATGA
*
37594005 GATAAGGCCGAATGGCCAA--TGT
1 GATAAGGCTGAATGGCCAATGTGT
37594027 GATGAAGG-TGAACAT-G-CATATGTGT
1 GAT-AAGGCTG-A-ATGGCCA-ATGTGT
37594052 GATAAGGCTGAATGGCCAATGTG
1 GATAAGGCTGAATGGCCAATGTG
37594075 ATGAATGTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 16
0.69 0.02 0.29
Matches are distributed among these distances:
22 6 0.16
23 9 0.24
24 13 0.34
25 10 0.26
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.23
Consensus pattern (24 bp):
GATAAGGCTGAATGGCCAATGTGT
Found at i:37594217 original size:22 final size:22
Alignment explanation
Indices: 37594142--37594217 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
37594132 ACATGCATAT
*
37594142 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
37594164 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
37594188 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
37594211 ATGTGAT
1 ATGTGAT
37594218 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Done.