Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 111 of 344
Found at i:37594292 original size:46 final size:46
Alignment explanation
Indices: 37594240--37594370 Score: 181
Period size: 46 Copynumber: 2.8 Consensus size: 46
37594230 GTATATATAT
*
37594240 GGTAAAGCCGAATGGCTAATGCAAAATGTGTATGAGATGGATATGA
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
* * *
37594286 GGTAAAGCCGAATGGCTAATGCGTAACGTGTATGAGATGGATATGT
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
* * * * *
37594332 GTTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
37594371 TGTATATATA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
Found at i:37599227 original size:28 final size:27
Alignment explanation
Indices: 37599196--37599250 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
37599186 ACAGTATCAA
*
37599196 GTGGGCCTTAGCCCAATAACAGAATTAG
1 GTGGGCCTAAGCCCAAT-ACAGAATTAG
* *
37599224 GTGGGCCTAAGCCTAATATAGAATTAG
1 GTGGGCCTAAGCCCAATACAGAATTAG
37599251 TATCAGATGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (27 bp):
GTGGGCCTAAGCCCAATACAGAATTAG
Found at i:37619689 original size:37 final size:37
Alignment explanation
Indices: 37619628--37619706 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
37619618 TTATTACGAA
* * *
37619628 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
37619665 GTCTTACCCTGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37619702 GTCTT
1 GTCTT
37619707 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37619903 original size:47 final size:47
Alignment explanation
Indices: 37619825--37620235 Score: 680
Period size: 47 Copynumber: 8.7 Consensus size: 47
37619815 CCCTTCGGGA
* * * * *
37619825 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37619872 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37619919 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37619966 CTTATCACATATATACACTTTCATATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37620013 CTTATCACATATATACACTTTCACCTTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37620060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37620107 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37620154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37620201 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
37620236 AGAATCCCAA
Statistics
Matches: 345, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 344 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37624322 original size:46 final size:46
Alignment explanation
Indices: 37624272--37624444 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
37624262 TGGTTGAGCA
37624272 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
37624318 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
37624363 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
37624411 -CCCAAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
37624445 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 55 0.53
47 28 0.27
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37624428 original size:93 final size:93
Alignment explanation
Indices: 37624269--37624439 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
37624259 GGATGGTTGA
* * *
37624269 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCCCAACTCGTTGAGT
37624334 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
37624362 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCCCAA-CTCGTTGAG
*
37624426 TTGATTCCGAGTTC
65 TTGAGTCCGAGTTC
37624440 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37628845 original size:26 final size:26
Alignment explanation
Indices: 37628809--37628882 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
37628799 ATCAAAGTCG
37628809 GTCA-TTTACCCTCAAGGGTAAAACA
1 GTCATTTTACCCTCAAGGGTAAAACA
*** *
37628834 GTCATTTTACCCT-ATAGGGGTATGTCT
1 GTCATTTTACCCTCA-A-GGGTAAAACA
37628861 GTCATTTTACCCTACAAGGGTA
1 GTCATTTTACCCT-CAAGGGTA
37628883 TTTCGATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
25 5 0.12
26 9 0.22
27 24 0.60
28 1 0.03
29 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (26 bp):
GTCATTTTACCCTCAAGGGTAAAACA
Found at i:37628894 original size:27 final size:27
Alignment explanation
Indices: 37628837--37628924 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
37628827 TAAAACAGTC
* * * *
37628837 ATTTTACCCTATAGGGGTATGTCTG-TC
1 ATTTTACCCTACAAGGGTATTTC-GATA
37628864 ATTTTACCCTACAAGGGTATTTCGATA
1 ATTTTACCCTACAAGGGTATTTCGATA
*
37628891 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACCCTACAAGGGTATTTCGATA
37628918 ATTTTAC
1 ATTTTAC
37628925 AAATTGAGGG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGTATTTCGATA
Found at i:37628925 original size:27 final size:27
Alignment explanation
Indices: 37628877--37629350 Score: 521
Period size: 27 Copynumber: 17.7 Consensus size: 27
37628867 TTACCCTACA
* *
37628877 AGGGTATTTCGATAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
37628904 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37628931 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
37628958 AAGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37628985 AGGGTATTTTGATAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
37629012 AGGGTATTTCGATAATTTTCCAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37629039 AGGGTGTTTCGATAATTTTCCAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
37629066 AGGGTGTTTCGGTAATTTTCCAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37629093 AGGGTGTTTCAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
37629120 AGGGTATTTCAATAATTTCAC-CATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37629146 AGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37629173 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37629200 AGGGTATTTC-AGTAATTTCAC-AATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
37629226 AGAGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37629253 GGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
37629280 AGGGTATTT-TAGTAATGTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
37629306 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
37629333 AGAGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
37629351 CTCTTTATTA
Statistics
Matches: 385, Mismatches: 53, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
26 63 0.16
27 320 0.83
28 2 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:37629178 original size:80 final size:80
Alignment explanation
Indices: 37628877--37629350 Score: 563
Period size: 80 Copynumber: 5.9 Consensus size: 80
37628867 TTACCCTACA
* * * * * * *
37628877 AGGGTATTTCGATAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTCG
1 AGGGTATTTCAATAATTTCACAAT-CGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCG
37628942 GTAATTTTACAAATCG
65 GTAATTTTACAAATCG
* ** * * * * *
37628958 AAGGTATTTCGGTAATTTTACAAATTGAGGGTATTTTGATAATTTTATAAATCGAGGGTATTTCG
1 AGGGTATTTCAATAATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCG
* *
37629023 ATAATTTTCCAAATCG
65 GTAATTTTACAAATCG
* * * * *
37629039 AGGGTGTTTCGATAATTTTC-CAAATCGAGGGTGTTTCGGTAATTTTCCAAATCGAGGGTGTTTC
1 AGGGTATTTCAATAA-TTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTC
**
37629103 AATAATTTTACAAATCG
64 GGTAATTTTACAAATCG
* * * *
37629120 AGGGTATTTCAATAATTTCACCATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCGG
1 AGGGTATTTCAATAATTTCACAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
37629185 TAATTTTACAAATCG
66 TAATTTTACAAATCG
* * * * *
37629200 AGGGTATTTCAGTAATTTCACAATTGAGAGTATTTCGGTAATTTTACAAATTGGGGGTATTTCGG
1 AGGGTATTTCAATAATTTCACAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
37629265 TAATTTTACAAATCG
66 TAATTTTACAAATCG
* * * * *
37629280 AGGGTATTTTAGTAATGTCACAATCGAGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTCAG
1 AGGGTATTTCAATAATTTCACAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
37629345 TAATTT
66 TAATTT
37629351 CTCTTTATTA
Statistics
Matches: 340, Mismatches: 50, Indels: 7
0.86 0.13 0.02
Matches are distributed among these distances:
80 190 0.56
81 145 0.43
82 5 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (80 bp):
AGGGTATTTCAATAATTTCACAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
TAATTTTACAAATCG
Found at i:37629721 original size:28 final size:28
Alignment explanation
Indices: 37629690--37629755 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
37629680 TTCGTATAGT
37629690 CCATTAGGCCCAATCACATTCATATGAC
1 CCATTAGGCCCAATCACATTCATATGAC
* *
37629718 CCATCAGGCCCAATCACATTCATATGGC
1 CCATTAGGCCCAATCACATTCATATGAC
37629746 CCATTAGGCC
1 CCATTAGGCC
37629756 AAACTACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.23
Consensus pattern (28 bp):
CCATTAGGCCCAATCACATTCATATGAC
Found at i:37631898 original size:40 final size:40
Alignment explanation
Indices: 37631793--37631938 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
37631783 GCTACTCGTT
*
37631793 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
37631833 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
37631873 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
37631914 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37631939 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37639986 original size:40 final size:40
Alignment explanation
Indices: 37639801--37639986 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
37639791 GCTACTCATT
* * * *
37639801 CAAAGGCCTTCGGGACATAGCCCGGTTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37639841 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
37639881 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
37639921 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37639962 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37639987 CATCATTCAA
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37643477 original size:27 final size:27
Alignment explanation
Indices: 37643433--37643521 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
37643423 CAAAATAGTC
* * * * *
37643433 ATTTTACCCTATAGGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATGTCGATA
* *
37643460 ATGTTT-CACTACAAGGGTATTTTGATA
1 AT-TTTACACTACAAGGGTATGTCGATA
*
37643487 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATGTCGATA
37643514 ATTTTACA
1 ATTTTACA
37643522 AAACGGGGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
26 3 0.06
27 46 0.88
28 3 0.06
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATGTCGATA
Found at i:37643531 original size:27 final size:27
Alignment explanation
Indices: 37643473--37643838 Score: 343
Period size: 27 Copynumber: 13.7 Consensus size: 27
37643463 TTTCACTACA
* * *
37643473 AGGGTATTTTGATAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
37643500 AGGGTATTTCGATAATTTTACAAAACG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
37643527 GGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
37643554 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37643581 A-GGT-GTTCTGATAATTTTACAAATTG
1 AGGGTATTTC-GATAATTTTACAAATCG
* * * *
37643607 AGGTTGTTTCGGTAATTATACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
37643634 AGGGTATTTC-ACTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
37643660 TGGGTATTTCGATAATTTTACATATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * **
37643687 AGGGTTTTTCGATAATTTTGCAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
37643714 AGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
37643741 AGGGTATTT-TAGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
37643767 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
37643794 GGGGTATTTTGGTAACTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
37643821 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
37643839 CCCTTTAATA
Statistics
Matches: 275, Mismatches: 53, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
25 3 0.01
26 63 0.23
27 205 0.75
28 4 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:37643617 original size:107 final size:107
Alignment explanation
Indices: 37643499--37643838 Score: 389
Period size: 107 Copynumber: 3.2 Consensus size: 107
37643489 TTTACACTAC
* * * * * * *
37643499 AAGGGTATTTCGATAATTTTACAAAACGGGGGTGTTTTGGTAATTTTACAAATCGAGGGTATTTC
1 AAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCGAGGGTATTTC
37643564 GATAATTTTACAAATCGA-GGTGTTCT-GATAATTTTACAAATT
65 GATAATTTTACAAATCGAGGGT-TTCTCGATAATTTTACAAATT
* * * * * *
37643606 GAGGTTGTTTCGGTAATTATACAAATCGAGGGTATTTCACTAATTTCACAATCGTGGGTATTTCG
1 AAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGAGGGTATTTCG
* * * *
37643671 ATAATTTTACATATCAAGGGTTTTTCGATAATTTTGCAAATT
66 ATAATTTTACAAATCGAGGGTTTCTCGATAATTTTACAAATT
*
37643713 AAGGGTGTTTCGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTCACAATCGAGGGTATTTCG
1 AAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGAGGGTATTTCG
* * * * * *
37643778 GTAATTTTACAAATCGGGGGTATT-TTGGTAACTTTACAAATC
66 ATAATTTTACAAATCGAGGGT-TTCTCGATAATTTTACAAATT
* * *
37643820 GAGGGTATTTCAGTAATTT
1 AAGGGTGTTTCGGTAATTT
37643839 CCCTTTAATA
Statistics
Matches: 194, Mismatches: 36, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
106 33 0.17
107 159 0.82
108 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (107 bp):
AAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGAGGGTATTTCG
ATAATTTTACAAATCGAGGGTTTCTCGATAATTTTACAAATT
Found at i:37643839 original size:80 final size:81
Alignment explanation
Indices: 37643473--37643838 Score: 370
Period size: 80 Copynumber: 4.6 Consensus size: 81
37643463 TTTCACTACA
* * * * * *
37643473 AGGGTATTTTGATAATTTTAC-ACTACAAGGGTATTTCGATAATTTTACAAAACGGGGGTGTTTT
1 AGGGTATTTCGATAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTC
37643537 GGTAATTTTACAAATCG
65 GGTAATTTTACAAATCG
* * *
37643554 AGGGTATTTCGATAATTTTACAAATCGA-GGT-GTTCTGATAATTTTACAAATTGAGGTTGTTTC
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTC-GATAATTTTACAAATCGAGGGTGTTTC
*
37643617 GGTAATTATACAAATCG
65 GGTAATTTTACAAATCG
* * * * *
37643634 AGGGTATTTC-ACTAATTTCAC-AATCGTGGGTATTTCGATAATTTTACATATCAAGGGTTTTTC
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTC
* * **
37643697 GATAATTTTGCAAATTA
65 GGTAATTTTACAAATCG
* * * * * *
37643714 AGGGTGTTTCGGTAATTTTACAAATTGAGGGTATTT-TAGTAATTTCAC-AATCGAGGGTATTTC
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCGAGGGTGTTTC
37643777 GGTAATTTTACAAATCG
65 GGTAATTTTACAAATCG
* * * *
37643794 GGGGTATTTTGGTAACTTTACAAATCGAGGGTATTTC-AGTAATTT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGA-TAATTT
37643839 CCCTTTAATA
Statistics
Matches: 234, Mismatches: 42, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
79 9 0.04
80 178 0.76
81 45 0.19
82 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCG
GTAATTTTACAAATCG
Found at i:37644209 original size:28 final size:28
Alignment explanation
Indices: 37644178--37644246 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
37644168 TTCGCATGTA
*
37644178 CCATCAGACCCAATCACATTCATATGGC
1 CCATCAGACCCAATCACATTCATATCGC
*
37644206 CCATCAGGCCCAATCACATTCATATCGC
1 CCATCAGACCCAATCACATTCATATCGC
*
37644234 CCATCAAACCCAA
1 CCATCAGACCCAA
37644247 GTACTTACCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.33, C:0.39, G:0.09, T:0.19
Consensus pattern (28 bp):
CCATCAGACCCAATCACATTCATATCGC
Found at i:37647100 original size:27 final size:27
Alignment explanation
Indices: 37647050--37647142 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
37647040 AGGGCAAAAT
* * *
37647050 AGTCATTTTACCCTATAAAAGTATGTC
1 AGTCATTTTACACTACAAAGGTATGTC
* * *
37647077 GGTCATTTTACACTACAAGGGTATTTC
1 AGTCATTTTACACTACAAAGGTATGTC
* * *
37647104 AGTAATTTTACACTACAATGGTATTTC
1 AGTCATTTTACACTACAAAGGTATGTC
* *
37647131 AATAATTTTACA
1 AGTCATTTTACA
37647143 AATCAGGGGT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACACTACAAAGGTATGTC
Found at i:37647157 original size:27 final size:27
Alignment explanation
Indices: 37647095--37647566 Score: 303
Period size: 27 Copynumber: 17.6 Consensus size: 27
37647085 TACACTACAA
* *
37647095 GGGTATTTCAGTAATTTTAC-ACTACAA
1 GGGTATTTCAGTAATTTTACAAAT-CAG
* *
37647122 TGGTATTTCAATAATTTTACAAATCAG
1 GGGTATTTCAGTAATTTTACAAATCAG
* * * *
37647149 GGGTGTTTCGGTAATTTTACAAATTAA
1 GGGTATTTCAGTAATTTTACAAATCAG
* ** *
37647176 GGGTGTTTTGGTAATTTCACAAATCGAG
1 GGGTATTTCAGTAATTTTACAAATC-AG
* *
37647204 GTTGT-TTT-GGTAATTTTACAAATC-G
1 G-GGTATTTCAGTAATTTTACAAATCAG
* *
37647229 AGGGT-GTTCCGATAATTTTACAAATC-G
1 -GGGTATTTCAG-TAATTTTACAAATCAG
* * *
37647256 AGGGTGTTTC-GATAATTTTATAAAT-TG
1 -GGGTATTTCAG-TAATTTTACAAATCAG
* * *
37647283 AGGGTATTTCAGTAATTTCACAATTGA-
1 -GGGTATTTCAGTAATTTTACAAATCAG
* *
37647310 GGGTATTTCAATAA-TTTACAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCAG
* **
37647336 GGGTGTTTCAAAAATTTTACAAATC-G
1 GGGTATTTCAGTAATTTTACAAATCAG
* *
37647362 AGGGTGTTTCGGTAATTTTACAAATCGAG
1 -GGGTATTTCAGTAATTTTACAAATC-AG
* * * *
37647391 GGGT-TTTTAGTAATTTCACAATTGA-
1 GGGTATTTCAGTAATTTTACAAATCAG
* * * *
37647416 TGGTATTTTAGTAATTTTAAAAATTAG
1 GGGTATTTCAGTAATTTTACAAATCAG
*
37647443 GGGTATTTCAGTAATTTGACAAATC-G
1 GGGTATTTCAGTAATTTTACAAATCAG
* *
37647469 AGGGTATTTTAGTAATTTTA-AAATCAA
1 -GGGTATTTCAGTAATTTTACAAATCAG
*
37647496 GGGTATTTC-GATAATTTTATAAATC-G
1 GGGTATTTCAG-TAATTTTACAAATCAG
* * *
37647522 AAGGTATTTCGGTAATTTTACAAATCAA
1 -GGGTATTTCAGTAATTTTACAAATCAG
*
37647550 GGTTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
37647567 CTCTTTATTA
Statistics
Matches: 359, Mismatches: 62, Indels: 48
0.77 0.13 0.10
Matches are distributed among these distances:
25 17 0.05
26 67 0.19
27 256 0.71
28 16 0.04
29 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCAG
Found at i:37647190 original size:81 final size:81
Alignment explanation
Indices: 37647092--37647547 Score: 275
Period size: 80 Copynumber: 5.7 Consensus size: 81
37647082 TTTTACACTA
* * *
37647092 CAAGGGTATTTCAGTAATTTTAC-ACTACAATGG-TATTTCAATAATTTTACAAATC-AGGGGTG
1 CAAGGGTGTTTCGGTAATTTTACAAAT-CAA-GGTTATTTCAATAATTTTACAAATCGA-GGGTG
* *
37647154 TTTCGGTAATTTTACAAAT
63 TTCCGATAATTTTACAAAT
* * * * * ***
37647173 TAAGGGTGTTTTGGTAATTTCACAAATCGAGGTTGTTTTGGTAATTTTACAAATCGAGGGTGTTC
1 CAAGGGTGTTTCGGTAATTTTACAAATCAAGGTTATTTCAATAATTTTACAAATCGAGGGTGTTC
37647238 CGATAATTTTACAAAT
66 CGATAATTTTACAAAT
* * * ** * * * * * *
37647254 CGAGGGTGTTTCGATAATTTTATAAATTGAGGGTATTTCAGTAATTTCAC-AATTGAGGGTATTT
1 CAAGGGTGTTTCGGTAATTTTACAAATCAAGGTTATTTCAATAATTTTACAAATCGAGGGTGTTC
*
37647318 CAATAA-TTTACAAAT
66 CGATAATTTTACAAAT
*** * * * ** *
37647333 CAAGGGTGTTTCAAAAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGG-GTTT
1 CAAGGGTGTTTCGGTAATTTTACAAATCAAGGTTATTTCAATAATTTTACAAATCGAGGGTGTTC
** *
37647397 TTAGTAATTTCAC-AAT
66 CGA-TAATTTTACAAAT
** * * ** * * * * * * *
37647413 TGATGGTATTTTAGTAATTTTAAAAATTAGGGGTATTTCAGTAATTTGACAAATCGAGGGTATT-
1 CAAGGGTGTTTCGGTAATTTTACAAATCAAGGTTATTTCAATAATTTTACAAATCGAGGGTGTTC
**
37647477 TTAGTAATTTTA-AAAT
66 CGA-TAATTTTACAAAT
* * * **
37647493 CAAGGGTATTTCGATAATTTTATAAATCGAAGG-TATTTCGGTAATTTTACAAATC
1 CAAGGGTGTTTCGGTAATTTTACAAATC-AAGGTTATTTCAATAATTTTACAAATC
37647548 AAGGTTATTT
Statistics
Matches: 297, Mismatches: 69, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
79 55 0.19
80 132 0.44
81 107 0.36
82 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (81 bp):
CAAGGGTGTTTCGGTAATTTTACAAATCAAGGTTATTTCAATAATTTTACAAATCGAGGGTGTTC
CGATAATTTTACAAAT
Found at i:37647191 original size:54 final size:54
Alignment explanation
Indices: 37647094--37647566 Score: 415
Period size: 54 Copynumber: 8.8 Consensus size: 54
37647084 TTACACTACA
* * * * *
37647094 AGGGTATTTCAGTAATTTTAC-ACTACAATGGTATTTCAATAATTTTACAAATC-
1 AGGGTATTTCGGTAATTTTACAAAT-CAAGGGTGTTTCAGTAATTTTACAAATCG
* * ** *
37647147 AGGGGTGTTTCGGTAATTTTACAAATTAAGGGTGTTTTGGTAATTTCACAAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCAGTAATTTTACAAATCG
* * * * *
37647202 AGGTTGTTTTGGTAATTTTACAAATCGAGGGTG-TTCCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCAG-TAATTTTACAAATCG
* * * ** * * *
37647256 AGGGTGTTTCGATAATTTTATAAATTGAGGGTATTTCAGTAATTTCAC-AATTG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCAGTAATTTTACAAATCG
** **
37647309 AGGGTATTTCAATAA-TTTACAAATCAAGGGTGTTTCAAAAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCAGTAATTTTACAAATCG
* * * * *
37647362 AGGGTGTTTCGGTAATTTTACAAATCGAGGG-GTTTTTAGTAATTTCAC-AATTG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTG-TTTCAGTAATTTTACAAATCG
* ** * * * * *
37647415 ATGGTATTTTAGTAATTTTAAAAATTAGGGGTATTTCAGTAATTTGACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCAGTAATTTTACAAATCG
** * *
37647469 AGGGTATTTTAGTAATTTTA-AAATCAAGGGTATTTC-GATAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCAG-TAATTTTACAAATCG
* * *
37647522 AAGGTATTTCGGTAATTTTACAAATCAAGGTTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCAGTAATTT
37647567 CTCTTTATTA
Statistics
Matches: 341, Mismatches: 66, Indels: 25
0.79 0.15 0.06
Matches are distributed among these distances:
52 26 0.08
53 122 0.36
54 185 0.54
55 8 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAATCAAGGGTGTTTCAGTAATTTTACAAATCG
Found at i:37647565 original size:160 final size:161
Alignment explanation
Indices: 37647123--37647567 Score: 485
Period size: 160 Copynumber: 2.8 Consensus size: 161
37647113 ACACTACAAT
* * * * * * *
37647123 GGTATTTCAATAATTTTACAAATC-AGGGGTGTTTCGGTAATTTTACAAATTAAGGGTGTTTTGG
1 GGTATTTCAGTAATTTCACAAATCGA-GGGTATTTCAGTAATTTTACAAATCAAGGGTGTTTCGA
* * * * * * *
37647187 TAATTTCACAAATCG-AGGTTGTTTTGGTAATTTTACAAATCGAGGGTGTTCCGATAATTTTACA
65 TAATTTTACAAATCGAAGG-TGTTTCGGTAATTTTACAAATCAAGGTTTTTCAG-TAATTTCACA
* *
37647251 AATCGAGGGTGTTTCGATAATTTTATAAATTGAG
128 AATCGAGGGTGTTTAGATAATTTTAAAAATTGAG
* * * *
37647285 GGTATTTCAGTAATTTCAC-AATTGAGGGTATTTCAATAA-TTTACAAATCAAGGGTGTTTCAAA
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTGTTTCGAT
* *
37647348 AATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGGTTTTT-AGTAATTTCAC-A
66 AATTTTACAAATCGAAGGTGTTTCGGTAATTTTACAAATC-A-AGGTTTTTCAGTAATTTCACAA
* * *
37647411 ATTGATGGTATTTTAG-TAATTTTAAAAATT-AGG
129 ATCGAGGGT-GTTTAGATAATTTTAAAAATTGA-G
* * *
37647444 GGTATTTCAGTAATTTGACAAATCGAGGGTATTTTAGTAATTTTA-AAATCAAGGGTATTTCGAT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTGTTTCGAT
* *
37647508 AATTTTATAAATCGAAGGTATTTCGGTAATTTTACAAATCAAGGTTATTTCAGTAATTTC
66 AATTTTACAAATCGAAGGTGTTTCGGTAATTTTACAAATCAAGGTT-TTTCAGTAATTTC
37647568 TCTTTATTAT
Statistics
Matches: 237, Mismatches: 36, Indels: 22
0.80 0.12 0.07
Matches are distributed among these distances:
158 5 0.02
159 44 0.19
160 144 0.61
161 21 0.09
162 23 0.10
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (161 bp):
GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTGTTTCGAT
AATTTTACAAATCGAAGGTGTTTCGGTAATTTTACAAATCAAGGTTTTTCAGTAATTTCACAAAT
CGAGGGTGTTTAGATAATTTTAAAAATTGAG
Found at i:37647915 original size:28 final size:28
Alignment explanation
Indices: 37647882--37647973 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
37647872 CAGCCCCTTT
* ***
37647882 AGGCCCAATCTCGTTTGCATGGCCCATC
1 AGGCCCAATCACGTTCATATGGCCCATC
*
37647910 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACGTTCATATGGCCCATC
37647938 AGGCCCAATCACGTTCATATGGCCCATC
1 AGGCCCAATCACGTTCATATGGCCCATC
*
37647966 AAGCCCAA
1 AGGCCCAA
37647974 CTACTTCCCA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.26, C:0.36, G:0.17, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCACGTTCATATGGCCCATC
Found at i:37654784 original size:141 final size:140
Alignment explanation
Indices: 37654383--37654804 Score: 716
Period size: 135 Copynumber: 3.1 Consensus size: 140
37654373 AAGAACATAG
37654383 ATATAATT--AATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
1 ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
*
37654446 TTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACAT-G--A--AATATTCT
66 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
37654506 TTTGGAAAGA
131 TTTGGAAAGA
37654516 ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
1 ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
* *
37654581 TTAATATAAATAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGAAAATTAATATTCT
66 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
37654646 TTTGGAAAGA
131 TTTGGAAAGA
* *
37654656 ATATAATTAAAATATATGAATTTGATTCATACAAAATATT-AGTTGTATATATTTTTATCAAATT
1 ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGA-TTGTATATA-TTTTACCGAATT
*
37654720 TATTAATATAAACAGTTATATTAATTAATTTTGGTTAAAATATAAAAGACATGGAAATTAATATT
64 TATTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATT
37654785 CTTTTGGAAAGA
129 CTTTTGGAAAGA
37654797 ATATAATT
1 ATATAATT
37654805 CCTTTTTCTA
Statistics
Matches: 272, Mismatches: 8, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
133 8 0.03
135 103 0.38
138 1 0.00
139 1 0.00
140 67 0.25
141 92 0.34
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (140 bp):
ATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTTA
TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
TTTGGAAAGA
Found at i:37654905 original size:76 final size:75
Alignment explanation
Indices: 37654780--37654930 Score: 230
Period size: 76 Copynumber: 2.0 Consensus size: 75
37654770 ATGGAAATTA
* * * *
37654780 ATATTCTTTTGGAAAGAATATAATTCCTTTTTCTAACTTTTCATTTGCCTTCTCTATTAATAATG
1 ATATTCTTTTGAAAAAAATATAATTCCTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
37654845 CAATAATCCT
66 CAATAATCCT
* *
37654855 ATATTCTTTTGAAAAAAAATATAATTCCTTTTTCTAACTTTCCATTTGCCTTTTCTGTTAATAAG
1 ATATTCTTTTG-AAAAAAATATAATTCCTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAG
*
37654920 GGAATAATCCT
65 GCAATAATCCT
37654931 GGTTTTTCTT
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
75 11 0.16
76 57 0.84
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTGAAAAAAATATAATTCCTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
CAATAATCCT
Found at i:37657972 original size:24 final size:24
Alignment explanation
Indices: 37657945--37657992 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
37657935 TGGTGAATAT
*
37657945 ATATATG-AGGTTATGGTATGGTTA
1 ATATATGTAGGTT-TGATATGGTTA
*
37657969 ATATATGTATGTTTGATATGGTTA
1 ATATATGTAGGTTTGATATGGTTA
37657993 GATTGAAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (24 bp):
ATATATGTAGGTTTGATATGGTTA
Found at i:37659191 original size:15 final size:13
Alignment explanation
Indices: 37659153--37659183 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
37659143 AGGGGACACA
37659153 TGACCGTGTCACC
1 TGACCGTGTCACC
37659166 TGACCGTGTCACC
1 TGACCGTGTCACC
37659179 TGACC
1 TGACC
37659184 ATGTGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.39, G:0.23, T:0.23
Consensus pattern (13 bp):
TGACCGTGTCACC
Found at i:37667079 original size:39 final size:39
Alignment explanation
Indices: 37667019--37667100 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
37667009 AACTTAATGT
*
37667019 CTAGCAGGCCTCGTCCTGGTGATAAATTTAGGTTTATAC
1 CTAGCAGGCCTCGTCCTGGTGATAAATTCAGGTTTATAC
* *
37667058 CTAGCAGGCCTGGTGCC-GGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGT-CCTGGTGATAAATTCAGGTTTATAC
37667097 CTAG
1 CTAG
37667101 TAGAGTAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
39 37 0.95
40 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (39 bp):
CTAGCAGGCCTCGTCCTGGTGATAAATTCAGGTTTATAC
Found at i:37675767 original size:27 final size:27
Alignment explanation
Indices: 37675736--37675886 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
37675726 TAAATTGTAC
37675736 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
37675763 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
37675789 ATGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGA-TTTGACTATGT
* * *
37675818 AGCACTAAGTGTGCGACTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37675845 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37675872 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37675887 GACTCAATAT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 82 0.79
28 21 0.20
29 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37675823 original size:55 final size:55
Alignment explanation
Indices: 37675736--37675886 Score: 191
Period size: 55 Copynumber: 2.8 Consensus size: 55
37675726 TAAATTGTAC
* *
37675736 AGCACTAAGTGTGCGA-TTTGACTATGTTGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGT
*** *
37675789 ATGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGACTTGATTACGT
1 A-GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGT
* * *
37675845 AGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
37675887 GACTCAATAT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
53 1 0.01
54 37 0.43
55 47 0.55
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGT
Found at i:37678502 original size:39 final size:39
Alignment explanation
Indices: 37678452--37678538 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
37678442 AACTTAATGT
37678452 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
*
37678491 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
37678530 CTAGCAGGC
1 CTAGCAGGC
37678539 TAATTCCCGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:37678549 original size:39 final size:39
Alignment explanation
Indices: 37678452--37678551 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 39
37678442 AACTTAATGT
* *
37678452 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTAGTCCCGGTGATAAATTCAGGTTTATAC
* * *
37678491 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTCCCGGTGATAAATTCAGGTTTATAC
*
37678530 CTAGCAGG-CTAATTCCCGGTGA
1 CTAGCAGGCCT-AGTCCCGGTGA
37678552 GATAATAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
38 2 0.04
39 54 0.96
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
CTAGCAGGCCTAGTCCCGGTGATAAATTCAGGTTTATAC
Found at i:37679796 original size:10 final size:10
Alignment explanation
Indices: 37679781--37679823 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
37679771 CAATTTACCA
37679781 ACCAAATCAT
1 ACCAAATCAT
*
37679791 ACCAAATCTAA
1 ACCAAATC-AT
37679802 ACCAAAATCAT
1 ACC-AAATCAT
*
37679813 ACCAAAGCAT
1 ACCAAATCAT
37679823 A
1 A
37679824 TATTTCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:37680646 original size:42 final size:44
Alignment explanation
Indices: 37680599--37680693 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
37680589 TCCTAGGCAG
* * *
37680599 GGTCTTACAC-AAAATCA-AA-TACAATGCTAATGTCCTAGTTGT
1 GGTCTTACACGAAAATCATAAGT-CAATGCCAACGTCCTAGATGT
*
37680641 GGTCTTACACGTAAATCATAAGTCAATGCCAACGTCCTAGATGT
1 GGTCTTACACGAAAATCATAAGTCAATGCCAACGTCCTAGATGT
37680685 GGTCTTACA
1 GGTCTTACA
37680694 TGATAACACA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 10 0.22
43 6 0.13
44 29 0.63
45 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (44 bp):
GGTCTTACACGAAAATCATAAGTCAATGCCAACGTCCTAGATGT
Found at i:37695407 original size:22 final size:20
Alignment explanation
Indices: 37695360--37695400 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
37695350 CTTTAGACCA
37695360 TATTTAGACAAATTTTTTTT
1 TATTTAGACAAATTTTTTTT
*
37695380 TATTTAGACAGATTTTTTTT
1 TATTTAGACAAATTTTTTTT
37695400 T
1 T
37695401 GTATTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (20 bp):
TATTTAGACAAATTTTTTTT
Found at i:37709418 original size:27 final size:28
Alignment explanation
Indices: 37709380--37709440 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
37709370 TGTACCTAGA
37709380 CCCCTA-ATTGATAAAATGACTAAAATG
1 CCCCTATATTGATAAAATGACTAAAATG
**
37709407 CCCCTATA-TGATAAAATGACTATTATG
1 CCCCTATATTGATAAAATGACTAAAATG
37709434 CCCCTAT
1 CCCCTAT
37709441 GAGATGTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (28 bp):
CCCCTATATTGATAAAATGACTAAAATG
Found at i:37715770 original size:40 final size:40
Alignment explanation
Indices: 37715726--37715949 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
37715716 GCTCCTCGTT
* * *
37715726 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
37715766 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
37715806 CAAATGCCTTC-GGCCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37715845 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
37715884 CAAATGCCTTC-GGATCTTGGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
37715925 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37715950 CATCATTCAA
Statistics
Matches: 162, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.01
39 72 0.44
40 71 0.44
41 17 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37715827 original size:79 final size:78
Alignment explanation
Indices: 37715726--37715949 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
37715716 GCTCCTCGTT
* * *
37715726 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGTACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37715791 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
37715806 CAAATGCCTTCGGCCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37715869 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
37715884 CAAATGCCTTCGGATCTTGGTCCGGATATTGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
37715948 GA
63 GA
37715950 CATCATTCAA
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
78 38 0.31
79 53 0.43
80 31 0.25
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:37718390 original size:25 final size:25
Alignment explanation
Indices: 37718362--37718413 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
37718352 ATACTGGATC
37718362 GTGATGTAAAGGTTTTAAGGAAAAA
1 GTGATGTAAAGGTTTTAAGGAAAAA
37718387 GTGATGTAAAGGTTTTAAGGAAAAA
1 GTGATGTAAAGGTTTTAAGGAAAAA
37718412 GT
1 GT
37718414 CTATCCCACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (25 bp):
GTGATGTAAAGGTTTTAAGGAAAAA
Found at i:37723211 original size:17 final size:17
Alignment explanation
Indices: 37723189--37723230 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
37723179 ATTTTCATAC
37723189 GAGCTTACTAAGCTTTA
1 GAGCTTACTAAGCTTTA
37723206 GAGCTTACTAAGCTTTA
1 GAGCTTACTAAGCTTTA
*
37723223 TAGCTTAC
1 GAGCTTAC
37723231 ATTATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (17 bp):
GAGCTTACTAAGCTTTA
Found at i:37734129 original size:21 final size:21
Alignment explanation
Indices: 37734095--37734150 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
37734085 CCCTTGAAAC
*
37734095 AGGGC-ACACACCCGTATGGA
1 AGGGCAACACGCCCGTATGGA
*
37734115 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTATGGA
*
37734136 AGGGGAACACGCCCG
1 AGGGCAACACGCCCG
37734151 CGTGGCCACT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 5 0.16
21 27 0.84
ACGTcount: A:0.27, C:0.30, G:0.36, T:0.07
Consensus pattern (21 bp):
AGGGCAACACGCCCGTATGGA
Found at i:37734155 original size:21 final size:21
Alignment explanation
Indices: 37734111--37734155 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
37734101 CACACCCGTA
*
37734111 TGGAAGGGCAACACGCCCGTG
1 TGGAAGGGCAACACGCCCGCG
*
37734132 TGGAAGGGGAACACGCCCGCG
1 TGGAAGGGCAACACGCCCGCG
37734153 TGG
1 TGG
37734156 CCACTATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.42, T:0.09
Consensus pattern (21 bp):
TGGAAGGGCAACACGCCCGCG
Found at i:37734591 original size:23 final size:24
Alignment explanation
Indices: 37734561--37734609 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
37734551 CGACTGACCG
*
37734561 TGTGTCACACACGG-CTAGACACA
1 TGTGTCACACACGGCCTACACACA
*
37734584 TGTGTCACACATGGCCTACACACA
1 TGTGTCACACACGGCCTACACACA
37734608 TG
1 TG
37734610 CCCGTGTGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (24 bp):
TGTGTCACACACGGCCTACACACA
Found at i:37735604 original size:47 final size:45
Alignment explanation
Indices: 37735495--37735663 Score: 148
Period size: 46 Copynumber: 3.7 Consensus size: 45
37735485 TACGTAGCCG
* * * *
37735495 ATGCATGTCCCAGACAT-TCTTGCACTTGCT-TACATCTCGAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-C-TCTCAATGCCA
* *
37735540 AAGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGCCA
* * * *
37735586 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTC-AT-AATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCTCTCAA--T-GCCA
37735634 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
37735664 ATACAAATAA
Statistics
Matches: 102, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
45 17 0.17
46 35 0.34
47 29 0.28
48 21 0.21
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGCCA
Found at i:37738344 original size:79 final size:81
Alignment explanation
Indices: 37738208--37738390 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
37738198 TCGAATGATG
* *
37738208 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
37738272 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
37738287 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
37738349 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
37738367 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
37738391 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:37738406 original size:40 final size:40
Alignment explanation
Indices: 37738209--37738392 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
37738199 CGAATGATGT
* * * *
37738209 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
37738249 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
37738289 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37738327 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37738368 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37738393 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37738414 original size:79 final size:79
Alignment explanation
Indices: 37738261--37738415 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
37738251 GGACTAAGAT
* **
37738261 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
37738326 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
37738340 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
37738403 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
37738416 ATTCCAAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:37745651 original size:27 final size:27
Alignment explanation
Indices: 37745620--37745797 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37745610 TAGATTGTAC
37745620 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37745647 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37745673 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37745701 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37745729 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37745756 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37745783 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37745798 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37745734 original size:82 final size:81
Alignment explanation
Indices: 37745621--37745776 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37745611 AGATTGTACA
* *
37745621 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37745685 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37745702 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37745767 TGCGAGTTGA
65 TGCGAATTGA
37745777 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37745788 original size:82 final size:81
Alignment explanation
Indices: 37745617--37745797 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37745607 GATTAGATTG
* *
37745617 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37745682 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37745698 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37745762 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37745780 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37745798 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37761247 original size:16 final size:16
Alignment explanation
Indices: 37761226--37761272 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
37761216 GGGGTGAATA
37761226 GAATAGGACTGTAATG
1 GAATAGGACTGTAATG
*
37761242 GAATAGTG-TTGTAATG
1 GAATAG-GACTGTAATG
*
37761258 GAATAGAACTGTAAT
1 GAATAGGACTGTAAT
37761273 CAGTAATTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 25 0.96
17 1 0.04
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30
Consensus pattern (16 bp):
GAATAGGACTGTAATG
Found at i:37764957 original size:17 final size:17
Alignment explanation
Indices: 37764935--37764970 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
37764925 GAAATAAAAA
37764935 TAGATGAGTTGAGTGGT
1 TAGATGAGTTGAGTGGT
37764952 TAGATGAGTTGAGTGGT
1 TAGATGAGTTGAGTGGT
37764969 TA
1 TA
37764971 TAGACTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.36
Consensus pattern (17 bp):
TAGATGAGTTGAGTGGT
Found at i:37765117 original size:10 final size:11
Alignment explanation
Indices: 37765095--37765137 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
37765085 ATAGATATAA
37765095 AAAATATAAAT
1 AAAATATAAAT
37765106 AAAATA-AAAT
1 AAAATATAAAT
* *
37765116 AAAATATTATT
1 AAAATATAAAT
37765127 AAAATCATAAA
1 AAAAT-ATAAA
37765138 GTACATCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 10 0.38
11 13 0.50
12 3 0.12
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATATAAAT
Found at i:37767761 original size:19 final size:20
Alignment explanation
Indices: 37767720--37767764 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
37767710 TTGAAAATGA
*
37767720 TTTTTGAAAAATGATTTATT
1 TTTTTGAAAAATGATTAATT
37767740 TTTTTGAAAAA-G-TTAATAT
1 TTTTTGAAAAATGATTAAT-T
37767759 TTTTTG
1 TTTTTG
37767765 GTGTTTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 8 0.35
20 11 0.48
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (20 bp):
TTTTTGAAAAATGATTAATT
Found at i:37768316 original size:16 final size:16
Alignment explanation
Indices: 37768285--37768321 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
37768275 ATGTGAATAA
37768285 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
37768301 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
37768317 TATTA
1 TATTA
37768322 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:37773314 original size:31 final size:30
Alignment explanation
Indices: 37773259--37773333 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 30
37773249 GATTATCAGC
* *
37773259 TAATGAAAAAGGATAGCTTTGGCTATTAAAA
1 TAATGAAAAGGGATAGCTTCGGCTA-TAAAA
*
37773290 TAATGAAAAGGGATAGGC-TCGGCTATCAAA
1 TAATGAAAAGGGATA-GCTTCGGCTATAAAA
* *
37773320 TTATGAGAAGGGAT
1 TAATGAAAAGGGAT
37773334 GGTGACGACC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 16 0.42
31 20 0.53
32 2 0.05
ACGTcount: A:0.41, C:0.08, G:0.25, T:0.25
Consensus pattern (30 bp):
TAATGAAAAGGGATAGCTTCGGCTATAAAA
Found at i:37773348 original size:30 final size:29
Alignment explanation
Indices: 37773322--37773394 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
37773312 CTATCAAATT
* *
37773322 ATGAGAAGGGATGGTGACGACCATCAATA
1 ATGAAAAGGGATGGTGACAACCATCAATA
*
37773351 ATGAAAAGGGATGGTGACAACCATCGAACA
1 ATGAAAAGGGATGGTGACAACCATC-AATA
37773381 ATGAAAAGGGATGG
1 ATGAAAAGGGATGG
37773395 CTTTAGCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 23 0.57
30 17 0.43
ACGTcount: A:0.41, C:0.12, G:0.32, T:0.15
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACAACCATCAATA
Found at i:37773363 original size:29 final size:30
Alignment explanation
Indices: 37773287--37773394 Score: 114
Period size: 30 Copynumber: 3.6 Consensus size: 30
37773277 TTGGCTATTA
* *
37773287 AAATAATGAAAAGGGATAGGCT--CGGCTATC
1 AAATAATGAAAAGGGAT-GG-TGACGACCATC
* *
37773317 AAATTATGAGAAGGGATGGTGACGACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
*
37773347 -AATAATGAAAAGGGATGGTGACAACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
* *
37773376 GAACAATGAAAAGGGATGG
1 AAATAATGAAAAGGGATGG
37773395 CTTTAGCTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.01
29 28 0.42
30 38 0.57
ACGTcount: A:0.42, C:0.12, G:0.29, T:0.18
Consensus pattern (30 bp):
AAATAATGAAAAGGGATGGTGACGACCATC
Found at i:37773459 original size:30 final size:30
Alignment explanation
Indices: 37773259--37773464 Score: 107
Period size: 30 Copynumber: 6.9 Consensus size: 30
37773249 GATTATCAGC
* * *
37773259 TAATGAAAAAGGATAGCTTTGGCTATTAAAA
1 TAATGAAAAGGGATAGCTTCGGCTA-TCAAA
37773290 TAATGAAAAGGGATAGGC-TCGGCTATCAAA
1 TAATGAAAAGGGATA-GCTTCGGCTATCAAA
* * * * * *
37773320 TTATGAGAAGGGAT-GGTGACGACCATC-AA
1 TAATGAAAAGGGATAGCT-TCGGCTATCAAA
* * ** * *
37773349 TAATGAAAAGGGAT-GGTGACAACCATCGAA
1 TAATGAAAAGGGATAGCT-TCGGCTATCAAA
* * ** **
37773379 CAATGAAAAGGGATGGCTTTAGCTATTGAA
1 TAATGAAAAGGGATAGCTTCGGCTATCAAA
** * *
37773409 TCGTG-AAATGGATAGTTTCGGCTATCAAA
1 TAATGAAAAGGGATAGCTTCGGCTATCAAA
*
37773438 TTATGAAAAGGGATAGCTTCGGCTATC
1 TAATGAAAAGGGATAGCTTCGGCTATC
37773465 GATCTATGAA
Statistics
Matches: 136, Mismatches: 33, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
28 1 0.01
29 46 0.34
30 65 0.48
31 22 0.16
32 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (30 bp):
TAATGAAAAGGGATAGCTTCGGCTATCAAA
Found at i:37773709 original size:26 final size:26
Alignment explanation
Indices: 37773680--37773732 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
37773670 ACGTATTGAA
37773680 AAGCATAGATTATATACTACGAACTT
1 AAGCATAGATTATATACTACGAACTT
37773706 AAGCATAGATTATATACTACGAACTT
1 AAGCATAGATTATATACTACGAACTT
37773732 A
1 A
37773733 CTAAGCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (26 bp):
AAGCATAGATTATATACTACGAACTT
Found at i:37775804 original size:47 final size:47
Alignment explanation
Indices: 37775741--37775959 Score: 321
Period size: 47 Copynumber: 4.7 Consensus size: 47
37775731 CCCTTCGGGA
* * * *
37775741 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37775788 CTTATCACATATATACACCTTCACATCCATCATATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37775835 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
37775882 CTTATCACATATACACACTTTCATATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37775929 CTTATCACATATATACACTTTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
37775960 TTATCACATA
Statistics
Matches: 154, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 154 1.00
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37775913 original size:94 final size:94
Alignment explanation
Indices: 37775741--37776211 Score: 350
Period size: 94 Copynumber: 5.2 Consensus size: 94
37775731 CCCTTCGGGA
* * * * *
37775741 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
* * * *
37775806 CTTCACATCCATCATATCGGCCATTAGGT
66 TTTCACATTCATCACATCGGCCATTAGGC
*
37775835 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
* * *
37775900 TTTCATATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
** * **
37775929 CTTATCACATATATACACTTTCACATTCATCTTATC--ACATATATACACTT-TCACAT-T---C
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCAT-TAGGC-CTTATCACATATACAC
** *
37775987 A---TCACATT-GGC-CATTCGGCC-TTA-TC
64 ACTTTCACATTCATCACA-TCGGCCATTAGGC
** * *
37776012 ACATATAT-ACACT-T-T-CACATTCATCACATT-GGC-CATTCGGCC-TTA----TCA-CATAT
1 -C-T-TATCACA-TATATACAC-TT--TCACATTCATCACA-TCGGCCATTAGGCCTTATCACAT
** ** *
37776065 ATACACTTTCACAT--TCATCACATCGGCCATTAGGC
58 ATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37776100 CATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
37776165 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
37776194 CTTATCACATATACACAC
1 CTTATCACATATATACAC
37776212 CTTGTACACC
Statistics
Matches: 289, Mismatches: 49, Indels: 78
0.69 0.12 0.19
Matches are distributed among these distances:
80 5 0.02
81 1 0.00
83 4 0.01
84 10 0.03
85 28 0.10
86 36 0.12
87 16 0.06
88 4 0.01
89 2 0.01
91 2 0.01
92 17 0.06
93 9 0.03
94 155 0.54
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:37775954 original size:16 final size:16
Alignment explanation
Indices: 37775933--37775984 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
37775923 TTCGGCCTTA
37775933 TCACATATATACACTT
1 TCACATATATACACTT
37775949 TCAC--AT-T-CATCTT
1 TCACATATATACA-CTT
37775962 ATCACATATATACACTT
1 -TCACATATATACACTT
37775979 TCACAT
1 TCACAT
37775985 TCATCACATT
Statistics
Matches: 30, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
12 2 0.07
13 4 0.13
14 6 0.20
16 12 0.40
17 4 0.13
18 2 0.07
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:37775963 original size:30 final size:30
Alignment explanation
Indices: 37775929--37775989 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
37775919 GCCATTCGGC
37775929 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
37775959 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
37775989 C
1 C
37775990 ACATTGGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (30 bp):
CTTATCACATATATACACTTTCACATTCAT
Found at i:37775973 original size:124 final size:127
Alignment explanation
Indices: 37775834--37776211 Score: 528
Period size: 124 Copynumber: 2.9 Consensus size: 127
37775824 GGCCATTAGG
*
37775834 TCTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACA
1 TCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACA
*
37775899 CTTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACA-T-T-CA
66 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTATACA
* * *
37775958 TCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 TCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACA
37776023 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATT-AT-ACA
*
37776087 TCGGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 T----C--T------TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* * *
37776152 CACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACAC
54 CACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
37776212 CTTGTACACC
Statistics
Matches: 225, Mismatches: 12, Indels: 17
0.89 0.05 0.07
Matches are distributed among these distances:
124 115 0.51
125 1 0.00
127 1 0.00
129 3 0.01
133 1 0.00
135 1 0.00
141 103 0.46
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (127 bp):
TCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACA
CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTATACA
Found at i:37776009 original size:77 final size:77
Alignment explanation
Indices: 37775882--37776036 Score: 292
Period size: 77 Copynumber: 2.0 Consensus size: 77
37775872 GCCATTAGGC
*
37775882 CTTATCACATATACACACTTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
37775947 TTTCACATTCAT
66 TTTCACATTCAT
*
37775959 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
37776024 TTTCACATTCAT
66 TTTCACATTCAT
37776036 C
1 C
37776037 ACATTGGCCA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.30, C:0.29, G:0.05, T:0.36
Consensus pattern (77 bp):
CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCAT
Found at i:37776015 original size:22 final size:22
Alignment explanation
Indices: 37775987--37776062 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
37775977 TTTCACATTC
37775987 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
37776009 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
37776033 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
37776056 ATCACAT
1 ATCACAT
37776063 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:37776016 original size:47 final size:47
Alignment explanation
Indices: 37775959--37776211 Score: 434
Period size: 47 Copynumber: 5.4 Consensus size: 47
37775949 TCACATTCAT
* * *
37775959 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37776006 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
37776053 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
37776100 CATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
37776147 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
37776194 CTTATCACATATACACAC
1 CTTATCACATATACACAC
37776212 CTTGTACACC
Statistics
Matches: 201, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 201 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37776073 original size:171 final size:171
Alignment explanation
Indices: 37775788--37776130 Score: 551
Period size: 171 Copynumber: 2.0 Consensus size: 171
37775778 GCCATTCGGC
* * *
37775788 CTTATCACATATATACACCTTCACATCCATCATATCGGCCATTAGGTCTTATCTCATATATACAC
1 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
37775853 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCATATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTCATCACATC
* * *
37775918 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCAT
131 GGCCATTAGGCCATATCACATATACACACTTTCACATTCAT
* * * *
37775959 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
37776024 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTCATCACATC
37776089 GGCCATTAGGCCATATCACATATACACACTTTCACATTCAT
131 GGCCATTAGGCCATATCACATATACACACTTTCACATTCAT
37776130 C
1 C
37776131 ACATCGGCCA
Statistics
Matches: 157, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
171 157 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (171 bp):
CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTCATCACATC
GGCCATTAGGCCATATCACATATACACACTTTCACATTCAT
Found at i:37776119 original size:218 final size:218
Alignment explanation
Indices: 37775741--37776177 Score: 748
Period size: 218 Copynumber: 2.0 Consensus size: 218
37775731 CCCTTCGGGA
*
37775741 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
37775806 CTTCACATCCATCATATCGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATC
66 CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* * * *
37775871 GGCCATTAGGCCTTATCACATATACACACTTTCATATTCATCACATTGGCCATTCGGCCTTATCA
131 GGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
37775936 CATATATACACTTTCACATTCAT
196 CATATACACACTTTCACATTCAT
*
37775959 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * * *
37776024 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
37776089 GGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
37776154 CATATACACACTTTCACATTCAT
196 CATATACACACTTTCACATTCAT
37776177 C
1 C
37776178 ACATCGGCCA
Statistics
Matches: 205, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
218 205 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.33
Consensus pattern (218 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATACACACTTTCACATTCAT
Found at i:37776156 original size:22 final size:22
Alignment explanation
Indices: 37776128--37776203 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
37776118 TTTCACATTC
37776128 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
37776150 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
37776174 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
37776197 ATCACAT
1 ATCACAT
37776204 ATACACACCT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:37782966 original size:79 final size:81
Alignment explanation
Indices: 37782831--37783048 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 81
37782821 AAATCACGTA
** * *
37782831 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAAT
*
37782891 ATAGTAACTCGCACAATTG
64 -TAGTAACTCGCACAAATG
*
37782910 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGGG-CTTAGCCCGGAATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATT
*
37782972 AGTATCTCGCACAAATG
65 AGTAACTCGCACAAATG
** *
37782989 CCTTCGGATCTTAGTCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGA
37783049 CATCATTCAA
Statistics
Matches: 119, Mismatches: 11, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
78 3 0.03
79 69 0.58
80 47 0.39
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
GTAACTCGCACAAATG
Found at i:37783048 original size:40 final size:40
Alignment explanation
Indices: 37782864--37783048 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
37782854 GCTACTCGTT
* * *
37782864 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
37782904 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* *
37782944 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
*
37782983 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
37783024 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37783049 CATCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 78 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:37786162 original size:78 final size:78
Alignment explanation
Indices: 37786072--37786215 Score: 270
Period size: 78 Copynumber: 1.8 Consensus size: 78
37786062 TTGGTTTTGG
37786072 TATCTTTTGGTGATTGCCAAATTACGTCATTTTGGGTACTTATGATCCATGAATGGTATGGCTCA
1 TATCTTTTGGTGATTGCCAAATTACGTCATTTTGGGTACTTATGATCCATGAATGGTATGGCTCA
37786137 ACTATGTTTATGA
66 ACTATGTTTATGA
* *
37786150 TATCTTTTGGTGATTGCCAAATTACGTCATTTTTGGTACTTATGATGCATGAATGGTATGGCTCA
1 TATCTTTTGGTGATTGCCAAATTACGTCATTTTGGGTACTTATGATCCATGAATGGTATGGCTCA
37786215 A
66 A
37786216 TTGGTATGTT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 64 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (78 bp):
TATCTTTTGGTGATTGCCAAATTACGTCATTTTGGGTACTTATGATCCATGAATGGTATGGCTCA
ACTATGTTTATGA
Found at i:37791529 original size:39 final size:40
Alignment explanation
Indices: 37791417--37791601 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
37791407 TCGAATGATG
* * *
37791417 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
37791456 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
37791497 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
37791536 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
37791575 AACCGGGCTATGTCCCGAAAGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37791602 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:37791623 original size:79 final size:79
Alignment explanation
Indices: 37791472--37791624 Score: 186
Period size: 79 Copynumber: 1.9 Consensus size: 79
37791462 ACTAAGATCT
* * ***
37791472 GAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAAAT
37791537 CCGGGTTAAGTCCC
66 CCGGGTTAAGTCCC
* *
37791551 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAAGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAAGCATTGGAACGAGTTA-CTA
*
37791614 TATCC-GGTTAA
63 AATCCGGGTTAA
37791625 ATTCCAAAGG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.62
80 22 0.35
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATTGGAACGAGTTACTAAAT
CCGGGTTAAGTCCC
Found at i:37799517 original size:40 final size:40
Alignment explanation
Indices: 37799443--37799626 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
37799433 TCGAATGATG
* *
37799443 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
37799483 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
37799522 TTCCGGGCTAAG--CCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
37799561 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
37799601 ACCGGGCTATGTCCCGAAAGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37799627 AATGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 33 0.27
39 2 0.02
40 82 0.66
41 7 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:37799578 original size:78 final size:79
Alignment explanation
Indices: 37799443--37799598 Score: 201
Period size: 78 Copynumber: 2.0 Consensus size: 79
37799433 TCGAATGATG
* *
37799443 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTTACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCTTGGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATTT
37799508 GTACGAGTTACTAAT
65 GTACGAGTTACTAAT
* * **
37799523 TCCGGGCTAAG-CCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGC-TTGGTGCTAAGTTACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
37799585 TGTGCGAGTTACTA
64 TGTACGAGTTACTA
37799599 TAACCGGGCT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 49 0.73
79 6 0.09
80 11 0.16
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCTTGGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATTTG
TACGAGTTACTAAT
Found at i:37799606 original size:78 final size:79
Alignment explanation
Indices: 37799444--37799618 Score: 196
Period size: 78 Copynumber: 2.2 Consensus size: 79
37799434 CGAATGATGT
* *
37799444 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTTACCATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAG-CCCGAAGGCTTGGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATTTG
*
37799509 TACGAGTTACTAATT
65 TACGAGTTACTAATA
* * **
37799524 CCGGGCTAAG-CCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CCGGGCTAAGCCCGAAGGC-TTGGTGCTAAGTTACCAAATCCGGACTAAGAT-CCGAAGGCATTT
*
37799586 GTGCGAGTTACT-ATAA
64 GTACGAGTTACTAAT-A
*
37799602 CCGGGCTATGTCCCGAA
1 CCGGGCTAAG-CCCGAA
37799619 AGCATTTGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
77 3 0.04
78 57 0.70
79 6 0.07
80 15 0.19
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCTTGGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATTTGT
ACGAGTTACTAATA
Found at i:37801727 original size:27 final size:27
Alignment explanation
Indices: 37801689--37801855 Score: 248
Period size: 27 Copynumber: 6.2 Consensus size: 27
37801679 TTATAGGACC
37801689 GTAATGCCCCTGTAGAGTAAAATGACT
1 GTAATGCCCCTGTAGAGTAAAATGACT
*
37801716 GTAATGCCCCTGTAGAGTAGAATGA-T
1 GTAATGCCCCTGTAGAGTAAAATGACT
* *
37801742 CGTAATGCCCTTGTAGAGTAAAATGACC
1 -GTAATGCCCCTGTAGAGTAAAATGACT
*
37801770 GTAATGCCCCTGTAGAGTAAAATGACC
1 GTAATGCCCCTGTAGAGTAAAATGACT
*
37801797 GTAATGCCCCTGTAG-GACAAAATGACT
1 GTAATGCCCCTGTAGAG-TAAAATGACT
*
37801824 GTAATGCCCCTGTAGGGTAAAATGACT
1 GTAATGCCCCTGTAGAGTAAAATGACT
37801851 GTAAT
1 GTAAT
37801856 ACACCTATAT
Statistics
Matches: 128, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.02
27 125 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (27 bp):
GTAATGCCCCTGTAGAGTAAAATGACT
Found at i:37801871 original size:27 final size:27
Alignment explanation
Indices: 37801685--37801874 Score: 208
Period size: 27 Copynumber: 7.0 Consensus size: 27
37801675 GTCATTATAG
37801685 GACCGTAATGCCCCTGTA-GAGTAAAAT
1 GACCGTAATGCCCCTGTAGGA-TAAAAT
* *
37801712 GACTGTAATGCCCCTGTA-GAGTAGAAT
1 GACCGTAATGCCCCTGTAGGA-TAAAAT
* *
37801739 GATCGTAATGCCCTTGTA-GAGTAAAAT
1 GACCGTAATGCCCCTGTAGGA-TAAAAT
37801766 GACCGTAATGCCCCTGTA-GAGTAAAAT
1 GACCGTAATGCCCCTGTAGGA-TAAAAT
*
37801793 GACCGTAATGCCCCTGTAGGACAAAAT
1 GACCGTAATGCCCCTGTAGGATAAAAT
* *
37801820 GACTGTAATGCCCCTGTAGGGTAAAAT
1 GACCGTAATGCCCCTGTAGGATAAAAT
* * * * *
37801847 GACTGTAATACACCTATATGATAAAAT
1 GACCGTAATGCCCCTGTAGGATAAAAT
37801874 G
1 G
37801875 TCGATTATGC
Statistics
Matches: 145, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
27 143 0.99
28 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GACCGTAATGCCCCTGTAGGATAAAAT
Found at i:37802069 original size:27 final size:27
Alignment explanation
Indices: 37802020--37802098 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
37802010 AGTTCTATAC
* *
37802020 TGGTGACTATGTCAC-ATTCACTGTTAA
1 TGGTGGCTATGCCACAATT-ACTGTTAA
* *
37802047 TGGTGGCTATGCCACAATTACTGATAC
1 TGGTGGCTATGCCACAATTACTGTTAA
** * *
37802074 TGGAAGCTTTGCCACATTTACTGTT
1 TGGTGGCTATGCCACAATTACTGTT
37802099 TCTGGCAGTT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 39 0.93
28 3 0.07
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
TGGTGGCTATGCCACAATTACTGTTAA
Found at i:37802348 original size:33 final size:33
Alignment explanation
Indices: 37802298--37802385 Score: 151
Period size: 33 Copynumber: 2.7 Consensus size: 33
37802288 CTGCTATTGT
37802298 ATAGGGC-TAGGGCCCAGACTGTACTGATACTGA
1 ATAGGGCTTA-GGCCCAGACTGTACTGATACTGA
*
37802331 ATAGGGCTTAGGTCCAGACTGTACTGATACTGA
1 ATAGGGCTTAGGCCCAGACTGTACTGATACTGA
37802364 ATAGGGCTTAGGCCCAGACTGT
1 ATAGGGCTTAGGCCCAGACTGT
37802386 GTTATTCACT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
33 50 0.96
34 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (33 bp):
ATAGGGCTTAGGCCCAGACTGTACTGATACTGA
Found at i:37806807 original size:14 final size:14
Alignment explanation
Indices: 37806788--37806817 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
37806778 CTAATGTTGG
37806788 CTTGGTTTTAATGT
1 CTTGGTTTTAATGT
37806802 CTTGGTTTTAATGT
1 CTTGGTTTTAATGT
37806816 CT
1 CT
37806818 CAACCGTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.20, T:0.57
Consensus pattern (14 bp):
CTTGGTTTTAATGT
Found at i:37820674 original size:29 final size:30
Alignment explanation
Indices: 37820602--37820680 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
37820592 GTCATGAGAT
* *
37820602 TGGCACTAAGTGTGAGGGTTTAAATTGTACA
1 TGGCACTAAGTGTGCGAGTTTAAA-TGTACA
37820633 --GCACTAAGTGTGCGAGTTTAAA-GTACA
1 TGGCACTAAGTGTGCGAGTTTAAATGTACA
37820660 TGGCACTAAGTGTGCGCAGTT
1 TGGCACTAAGTGTGCG-AGTT
37820681 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
29 34 0.79
30 4 0.09
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGTTTAAATGTACA
Found at i:37820950 original size:173 final size:174
Alignment explanation
Indices: 37820633--37820959 Score: 548
Period size: 173 Copynumber: 1.9 Consensus size: 174
37820623 AAATTGTACA
* *
37820633 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCAGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCAGTTGATTACTAAACACTATG
* * *
37820698 TGTGTGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGTCAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
37820763 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * ** *
37820807 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCAGTTGATTACTAAACACTATG
*
37820872 TGTG-CAACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGTCAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
37820936 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
37820960 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
173 80 0.56
174 62 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCAGTTGATTACTAAACACTATG
TGTGTCAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:37824417 original size:60 final size:60
Alignment explanation
Indices: 37824324--37824446 Score: 210
Period size: 60 Copynumber: 2.0 Consensus size: 60
37824314 TTTAAGGGGG
* *
37824324 GAGAGTTGTAACAGCCTGTTTTCACTGAAATCGGAACAGTAGTTTCTGGAGCACAAATAC
1 GAGAGTTGTAACAGCCTGTTTTCACTGAAATCGGAACACTAGTTTCTGGACCACAAATAC
* *
37824384 GAGAGTTGTAACAGCCTGTTTTCACTGAAATCGGAATACTGGTTTCTGGACCACAAATAC
1 GAGAGTTGTAACAGCCTGTTTTCACTGAAATCGGAACACTAGTTTCTGGACCACAAATAC
37824444 GAG
1 GAG
37824447 TTAAAAAGAA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (60 bp):
GAGAGTTGTAACAGCCTGTTTTCACTGAAATCGGAACACTAGTTTCTGGACCACAAATAC
Found at i:37834652 original size:50 final size:49
Alignment explanation
Indices: 37834535--37834710 Score: 228
Period size: 50 Copynumber: 3.5 Consensus size: 49
37834525 CTAGTACGTA
* *
37834535 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCT-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGA-TACACG
* **
37834584 TTGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACACG
* * * *
37834634 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGATACACG
37834685 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
37834711 TGCGACCTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 30 0.27
50 44 0.40
51 37 0.33
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
Found at i:37834718 original size:101 final size:99
Alignment explanation
Indices: 37834535--37834718 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
37834525 CTAGTACGTA
* * * *
37834535 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACGTTGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGAGTACACATAGTAGCCTGCACTTA
*
37834600 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * *
37834634 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGAGTACACATAGTAGCCTGCACT
*
37834699 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
37834719 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.57
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGAGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:37838355 original size:39 final size:40
Alignment explanation
Indices: 37838260--37838482 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
37838250 TTGAATGATG
*
37838260 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
37838298 ATTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
37838339 TCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37838378 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
37838417 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
37838456 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37838483 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
39 90 0.56
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37838396 original size:78 final size:80
Alignment explanation
Indices: 37838260--37838482 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
37838250 TTGAATGATG
* * * ** *
37838260 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATTCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
37838322 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
37838339 TCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
37838400 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
37838417 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
37838482 G
66 G
37838483 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
78 46 0.37
79 55 0.45
80 21 0.17
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:37838504 original size:79 final size:79
Alignment explanation
Indices: 37838312--37838515 Score: 204
Period size: 79 Copynumber: 2.6 Consensus size: 79
37838302 GGACTAAGAT
** * * *
37838312 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
37838375 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** *
37838390 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
37838454 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
37838470 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
37838516 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 37 0.34
79 46 0.42
80 25 0.23
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:37846338 original size:40 final size:39
Alignment explanation
Indices: 37846294--37846472 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 39
37846284 CAATATCGGA
37846294 CTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
1 CTAAG-TCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
37846334 CTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
1 CTAAG-TCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
* * *
37846374 CTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGG
1 CTAAGTCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
* *
37846413 TTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGG
1 CTAAGT-CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGG
*
37846453 CTATGTCCCGAAGGCATTTG
1 CTAAGT-CCGAAGGCATTTG
37846473 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 36 0.29
40 90 0.71
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CTAAGTCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
Found at i:37846398 original size:79 final size:80
Alignment explanation
Indices: 37846250--37846472 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 80
37846240 TTGAATGATG
* * * * *
37846250 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAAT-ATCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
37846311 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
37846328 TCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
37846389 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
* *
37846407 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
37846472 G
66 G
37846473 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
78 21 0.17
79 71 0.58
80 30 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:37846486 original size:40 final size:39
Alignment explanation
Indices: 37846251--37846472 Score: 201
Period size: 40 Copynumber: 5.6 Consensus size: 39
37846241 TGAATGATGT
* *
37846251 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAAT-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* * *
37846289 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
37846329 CCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
37846369 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
37846407 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAA
*
37846448 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37846473 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 13, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
38 16 0.10
39 40 0.25
40 101 0.63
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:37846494 original size:79 final size:79
Alignment explanation
Indices: 37846301--37846505 Score: 206
Period size: 79 Copynumber: 2.6 Consensus size: 79
37846291 GGACTAAGAT
** * *
37846301 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATAC
*
37846364 TAATTCCGGGCTAAGC
64 TAATACCGGGCTAAGC
** * *
37846380 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
*
37846444 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* *
37846460 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
37846506 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
78 5 0.05
79 79 0.72
80 25 0.23
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:37850209 original size:27 final size:27
Alignment explanation
Indices: 37850179--37850356 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
37850169 ATATTGAGCC
* * *
37850179 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
37850206 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
37850233 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
37850261 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
37850288 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
37850315 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
37850342 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37850357 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:37850272 original size:55 final size:55
Alignment explanation
Indices: 37850179--37850356 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
37850169 ATATTGAGCC
* * *
37850179 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
37850233 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
37850288 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
37850342 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37850357 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:37850318 original size:82 final size:81
Alignment explanation
Indices: 37850200--37850355 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
37850190 TGCTATACAA
* * *
37850200 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
37850265 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
37850282 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
37850346 CACTTAGTGC
65 CACTTAGTGC
37850356 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37858104 original size:27 final size:27
Alignment explanation
Indices: 37858074--37858251 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
37858064 ATATTGAGCC
* * *
37858074 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
37858101 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
37858128 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
37858156 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
37858183 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
37858210 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
37858237 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37858252 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:37858167 original size:55 final size:55
Alignment explanation
Indices: 37858074--37858251 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
37858064 ATATTGAGCC
* * *
37858074 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
37858128 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
37858183 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
37858237 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37858252 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:37858213 original size:82 final size:81
Alignment explanation
Indices: 37858095--37858250 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
37858085 TGCTATACAA
* * *
37858095 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
37858160 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
37858177 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
37858241 CACTTAGTGC
65 CACTTAGTGC
37858251 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37862931 original size:68 final size:65
Alignment explanation
Indices: 37862725--37862946 Score: 236
Period size: 64 Copynumber: 3.4 Consensus size: 65
37862715 CATAATTTTG
** * *
37862725 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTCGTA
** * * * * * *
37862788 GCTCTCTTGTTTACATGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTC
37862852 GTA
63 GTA
37862855 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTC-T-AT-TCT
37862919 CGTA
62 CGTA
*
37862923 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
37862947 TCCCGTATTA
Statistics
Matches: 129, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
63 18 0.14
64 29 0.22
65 1 0.01
66 24 0.19
67 28 0.22
68 28 0.22
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTCGTA
Found at i:37862969 original size:68 final size:68
Alignment explanation
Indices: 37862781--37862946 Score: 171
Period size: 67 Copynumber: 2.5 Consensus size: 68
37862771 AGCCACTTTA
* * * * * * *
37862781 TCTCGTAGCTCTCTTGTTTACATGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCTACATC
1 TCTCGTAGCTCTCTTGTCTACATGGTATAC-ACA-C-AGTATCACACATGCAACCTAGCTACCTC
37862846 -T-A--
63 ATAATG
* * *
37862848 TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTCATA
1 TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCAACCTAGCTACCTCATA
37862913 ATG
66 ATG
37862916 TCTCGTAGCTCTCTTGTAC-ACATGGTATACA
1 TCTCGTAGCTCTCTTGT-CTACATGGTATACA
37862947 TCCCGTATTA
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
64 24 0.28
65 1 0.01
66 3 0.04
67 28 0.33
68 28 0.33
69 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCAACCTAGCTACCTCATA
ATG
Found at i:37871055 original size:21 final size:20
Alignment explanation
Indices: 37871031--37871069 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
37871021 TGTGAATTGA
37871031 ATTAAATTGAGCATGAAATGG
1 ATTAAATTGA-CATGAAATGG
*
37871052 ATTAAATTGACATTAAAT
1 ATTAAATTGACATGAAAT
37871070 TCATTGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.33
Consensus pattern (20 bp):
ATTAAATTGACATGAAATGG
Found at i:37877576 original size:42 final size:42
Alignment explanation
Indices: 37877527--37877639 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
37877517 ACTGAGATTC
* *
37877527 CATATAAGACCATATCTGGGATATGGCATCGGTGTG-TGATTT
1 CATATAAGACCATATCTGGGATATGGCATCGATATGAT-ATTT
* * * * *
37877569 CTTATAAGACCATGTCAGGGACATGGCTTCGATATGATATTT
1 CATATAAGACCATATCTGGGATATGGCATCGATATGATATTT
*
37877611 CATGTAAGACCATATCTGGGATATGGCAT
1 CATATAAGACCATATCTGGGATATGGCAT
37877640 TTGCAACAGC
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 56 0.98
43 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
CATATAAGACCATATCTGGGATATGGCATCGATATGATATTT
Found at i:37885847 original size:16 final size:17
Alignment explanation
Indices: 37885826--37885857 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37885816 TATAACCTTA
37885826 GTTAT-AAAATTATAAG
1 GTTATAAAAATTATAAG
37885842 GTTATAAAAATTATAA
1 GTTATAAAAATTATAA
37885858 AATCATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (17 bp):
GTTATAAAAATTATAAG
Found at i:37886194 original size:16 final size:16
Alignment explanation
Indices: 37886173--37886206 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
37886163 CAACTTGACC
37886173 GTGCGACCTCAATTTA
1 GTGCGACCTCAATTTA
37886189 GTGCGACCTCAATTTA
1 GTGCGACCTCAATTTA
37886205 GT
1 GT
37886207 TGATGAAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (16 bp):
GTGCGACCTCAATTTA
Found at i:37886461 original size:18 final size:18
Alignment explanation
Indices: 37886434--37886497 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
37886424 GCATGTGAAT
*
37886434 GAAAAGTTTTAAATTTGG
1 GAAAAATTTTAAATTTGG
***
37886452 GAAAAATTTTATGGCTT--
1 GAAAAATTTTA-AATTTGG
*
37886469 GAAAAGTTTTAAATTTGG
1 GAAAAATTTTAAATTTGG
37886487 GAAAAATTTTA
1 GAAAAATTTTA
37886498 TGGCTCGGTT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
16 2 0.06
17 10 0.29
18 20 0.59
19 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.39
Consensus pattern (18 bp):
GAAAAATTTTAAATTTGG
Found at i:37886479 original size:35 final size:35
Alignment explanation
Indices: 37886433--37886502 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
37886423 TGCATGTGAA
37886433 TGAAAAGTTTTAAATTTGGGAAAAATTTTATGGCT
1 TGAAAAGTTTTAAATTTGGGAAAAATTTTATGGCT
37886468 TGAAAAGTTTTAAATTTGGGAAAAATTTTATGGCT
1 TGAAAAGTTTTAAATTTGGGAAAAATTTTATGGCT
37886503 CGGTTTTGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.20, T:0.40
Consensus pattern (35 bp):
TGAAAAGTTTTAAATTTGGGAAAAATTTTATGGCT
Found at i:37896130 original size:12 final size:12
Alignment explanation
Indices: 37896092--37896121 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37896082 ATGGAATGGC
*
37896092 AATTATAAGAAT
1 AATTACAAGAAT
37896104 AATTACAAGAAT
1 AATTACAAGAAT
37896116 AATTAC
1 AATTAC
37896122 GTGAATAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (12 bp):
AATTACAAGAAT
Found at i:37911082 original size:22 final size:23
Alignment explanation
Indices: 37911055--37911098 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
37911045 ACGCAAGCCA
37911055 TTGGAGAA-AACTGGAAGAAATT
1 TTGGAGAAGAACTGGAAGAAATT
*
37911077 TTGGAGAATGAAGTGGAAGAAA
1 TTGGAGAA-GAACTGGAAGAAA
37911099 AAAAAAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
24 11 0.58
ACGTcount: A:0.45, C:0.02, G:0.32, T:0.20
Consensus pattern (23 bp):
TTGGAGAAGAACTGGAAGAAATT
Found at i:37922637 original size:53 final size:54
Alignment explanation
Indices: 37922508--37922762 Score: 258
Period size: 55 Copynumber: 4.8 Consensus size: 54
37922498 ACATTGGTAC
* * *
37922508 CTTACCATTGCCATGACTTGTA-ATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTG-ACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
37922557 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
37922610 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
37922665 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
37922718 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
37922763 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 22, Indels: 18
0.81 0.10 0.08
Matches are distributed among these distances:
48 1 0.01
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:37922699 original size:108 final size:110
Alignment explanation
Indices: 37922555--37922755 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
37922545 ATCCTTTTGA
* *
37922555 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
37922618 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
37922663 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
37922728 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
37922756 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:37925113 original size:14 final size:14
Alignment explanation
Indices: 37925094--37925123 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
37925084 AATAAGTTAA
37925094 ATTTACTATTATAG
1 ATTTACTATTATAG
37925108 ATTTACTATTATAG
1 ATTTACTATTATAG
37925122 AT
1 AT
37925124 CAAGAAGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
ATTTACTATTATAG
Found at i:37935298 original size:13 final size:13
Alignment explanation
Indices: 37935280--37935304 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37935270 ACAAAGACAG
37935280 ACACGGCCGTGTC
1 ACACGGCCGTGTC
37935293 ACACGGCCGTGT
1 ACACGGCCGTGT
37935305 GCACCCACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (13 bp):
ACACGGCCGTGTC
Found at i:37941007 original size:39 final size:39
Alignment explanation
Indices: 37940911--37941091 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
37940901 ATGATGTCCG
* *
37940911 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
37940950 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
37940990 AGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCTG
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC-C
*
37941030 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTGTAA--CC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC--TAATTCC
*
37941069 GGGCTATGTCCCGAAGGCATTTG
1 -GGCTAAGTCCCGAAGGCATTTG
37941092 AACGAGTTGC
Statistics
Matches: 121, Mismatches: 10, Indels: 21
0.80 0.07 0.14
Matches are distributed among these distances:
39 35 0.29
40 71 0.59
41 12 0.10
42 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:37941113 original size:79 final size:78
Alignment explanation
Indices: 37940907--37941114 Score: 219
Period size: 79 Copynumber: 2.6 Consensus size: 78
37940897 TCGAATGATG
* *
37940907 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTG-CTATATCCGG-TTAAGATCCGAAGGCAT
37940970 TTGTGCGAGTTACTAA
63 TTGTGCGAGTTACTAA
* * * * *
37940986 TTCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATC-CGGTTAAGAT-CCGAAGGCAT
37941049 TTGTGCGAGTTACTGTAA
63 TTGTGCGAGTTAC--TAA
* **
37941067 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATATCCGGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGTTAA
37941115 ATTTCGAAGG
Statistics
Matches: 106, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
78 1 0.01
79 58 0.55
80 44 0.42
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGTTAAGATCCGAAGGCATTTG
TGCGAGTTACTAA
Found at i:37949075 original size:39 final size:40
Alignment explanation
Indices: 37948975--37949159 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
37948965 TCGAATGATG
* * *
37948975 TCCGGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
37949014 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
37949055 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
37949095 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
37949133 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37949160 AACGAGTTGC
Statistics
Matches: 125, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 83 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Done.