Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 12 of 344
Found at i:4265805 original size:46 final size:46
Alignment explanation
Indices: 4265698--4265805 Score: 128
Period size: 46 Copynumber: 2.3 Consensus size: 46
4265688 GCTCTCTGAT
* * * * * *
4265698 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACGTTAT
1 ATGAAATGAGTAAGACCATGGTTGAAAAATACCATGGCAACATGAC
**
4265744 ATGAAATGAACAAGACCATGGTTGAAAAATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAAATACCATGGCAACATGAC
4265790 A-GAAAATGAGTAAGAC
1 ATG-AAATGAGTAAGAC
4265806 TATAATTGAA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 1 0.02
46 50 0.98
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAAATACCATGGCAACATGAC
Found at i:4268312 original size:25 final size:27
Alignment explanation
Indices: 4268279--4268337 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 27
4268269 ATTATAGCAA
* *
4268279 ATTACAATATATTATA-TAAAATA-AT
1 ATTAAAATATAATATATTAAAATATAT
*
4268304 ATTAAAATATAATATATTAAACTATAT
1 ATTAAAATATAATATATTAAAATATAT
4268331 ATTAAAA
1 ATTAAAA
4268338 ATTTATTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 14 0.48
26 6 0.21
27 9 0.31
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (27 bp):
ATTAAAATATAATATATTAAAATATAT
Found at i:4270876 original size:31 final size:31
Alignment explanation
Indices: 4270840--4270902 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
4270830 TGATACTTTA
* * *
4270840 ATTTGATTAATTTTAGTTCTTATATTTTTTG
1 ATTTGATCAATTTTAGTCCTTATATATTTTG
* *
4270871 ATTTGATCAATTTTCGTCCTTGTATATTTTG
1 ATTTGATCAATTTTAGTCCTTATATATTTTG
4270902 A
1 A
4270903 ATCTTAAGAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.22, C:0.08, G:0.11, T:0.59
Consensus pattern (31 bp):
ATTTGATCAATTTTAGTCCTTATATATTTTG
Found at i:4274481 original size:17 final size:17
Alignment explanation
Indices: 4274459--4274509 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 17
4274449 AATATATATT
*
4274459 TAAAAT-ATTTGATATAA
1 TAAAATCATTT-AAATAA
4274476 TAAAATCATTTAAATAA
1 TAAAATCATTTAAATAA
4274493 TAATTAATACATTTAAA
1 TAA--AAT-CATTTAAA
4274510 AAATGTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 14 0.48
18 4 0.14
19 3 0.10
20 8 0.28
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (17 bp):
TAAAATCATTTAAATAA
Found at i:4288682 original size:4 final size:4
Alignment explanation
Indices: 4288673--4288701 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
4288663 TTCTAATATC
4288673 TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
4288702 ACAGTTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:4289045 original size:21 final size:21
Alignment explanation
Indices: 4289013--4289053 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4289003 TTTAATGTTT
4289013 AATTTAGAATTTGAATTTTTC
1 AATTTAGAATTTGAATTTTTC
*
4289034 AATTT-GATATTTGAGTTTTT
1 AATTTAGA-ATTTGAATTTTT
4289054 TTATTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.56
Consensus pattern (21 bp):
AATTTAGAATTTGAATTTTTC
Found at i:4308717 original size:90 final size:90
Alignment explanation
Indices: 4308564--4308836 Score: 465
Period size: 90 Copynumber: 3.0 Consensus size: 90
4308554 TTTAGGGATA
* *
4308564 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATGTCAAAGGAGATGAATGTGAAGTCTACA
1 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGATAAATGTGAAGTCTACA
** *
4308629 TCATTCAGCAAGGAAAATAGCAACC
66 TCATTCAGCAAGGGGAATAGCAGCC
*
4308654 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGACAAATGTGAAGTCTACA
1 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGATAAATGTGAAGTCTACA
*
4308719 TCATCCAGCAAGGGGAATAGCAGCC
66 TCATTCAGCAAGGGGAATAGCAGCC
*
4308744 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGAACTCAAAGGAGATAAATGTGAAGTCTACA
1 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGATAAATGTGAAGTCTACA
*
4308809 TCATTCAGCAGGGGGAATAGCAGCC
66 TCATTCAGCAAGGGGAATAGCAGCC
4308834 AAA
1 AAA
4308837 GACCTGGAGA
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 172 1.00
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.15
Consensus pattern (90 bp):
AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGATAAATGTGAAGTCTACA
TCATTCAGCAAGGGGAATAGCAGCC
Found at i:4310224 original size:15 final size:15
Alignment explanation
Indices: 4310204--4310234 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
4310194 CATAGGATGG
4310204 TTAATGAATCATCCA
1 TTAATGAATCATCCA
4310219 TTAATGAATCATCCA
1 TTAATGAATCATCCA
4310234 T
1 T
4310235 ATGTTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.35
Consensus pattern (15 bp):
TTAATGAATCATCCA
Found at i:4310548 original size:26 final size:26
Alignment explanation
Indices: 4310512--4310563 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
4310502 GTCCGCTTAT
4310512 TTCCAATTCGTGAGCTTAGCTGAAAC
1 TTCCAATTCGTGAGCTTAGCTGAAAC
4310538 TTCCAATTCGTGAGCTTAGCTGAAAC
1 TTCCAATTCGTGAGCTTAGCTGAAAC
4310564 AAAGTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
TTCCAATTCGTGAGCTTAGCTGAAAC
Found at i:4310682 original size:14 final size:14
Alignment explanation
Indices: 4310663--4310689 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4310653 TAGCCTTAAA
4310663 AGTAAAGTAAAATT
1 AGTAAAGTAAAATT
4310677 AGTAAAGTAAAAT
1 AGTAAAGTAAAAT
4310690 AAAGGGCGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (14 bp):
AGTAAAGTAAAATT
Found at i:4312491 original size:14 final size:14
Alignment explanation
Indices: 4312469--4312498 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4312459 AAATTTTAAA
*
4312469 TTAATTTGCGAACC
1 TTAAATTGCGAACC
4312483 TTAAATTGCGAACC
1 TTAAATTGCGAACC
4312497 TT
1 TT
4312499 GAAGACTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (14 bp):
TTAAATTGCGAACC
Found at i:4315503 original size:19 final size:20
Alignment explanation
Indices: 4315479--4315524 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
4315469 TAAATTAAGA
4315479 AATTTTTATAAA-TATTTTG-
1 AATTTTTA-AAATTATTTTGT
4315498 AA-TTTTAAAATTTATTTTGT
1 AATTTTTAAAA-TTATTTTGT
4315518 AATTTTT
1 AATTTTT
4315525 GTTGAGAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 3 0.13
18 5 0.22
19 9 0.39
20 2 0.09
21 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (20 bp):
AATTTTTAAAATTATTTTGT
Found at i:4322307 original size:15 final size:17
Alignment explanation
Indices: 4322277--4322308 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
4322267 TATATTCCAT
4322277 TAAAAATATATTTAAAA
1 TAAAAATATATTTAAAA
4322294 TAAAAA-AT-TTTAAAA
1 TAAAAATATATTTAAAA
4322309 GTGATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAAAATATATTTAAAA
Found at i:4328564 original size:29 final size:31
Alignment explanation
Indices: 4328505--4328573 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
4328495 TAAATTTTAA
*
4328505 AATTATATATATATATTTTGATTTAATGTGT
1 AATTATATATATATATTTTAATTTAATGTGT
4328536 AATTATATATAT-TAATTTTAATTT-A-GTGT
1 AATTATATATATAT-ATTTTAATTTAATGTGT
4328565 AATTATATA
1 AATTATATA
4328574 CGTAAAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
29 13 0.36
30 2 0.06
31 21 0.58
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (31 bp):
AATTATATATATATATTTTAATTTAATGTGT
Found at i:4328790 original size:30 final size:29
Alignment explanation
Indices: 4328750--4328814 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
4328740 GTTAATAATT
*
4328750 TATA-AAAATTAAATC-AAATTAAAATTTTA
1 TATATAAAATTAAA-CAAAATTAAAA-TTCA
*
4328779 TATATAAAATTACACAAAATTAAAATTCA
1 TATATAAAATTAAACAAAATTAAAATTCA
4328808 TATATAA
1 TATATAA
4328815 TTATTTTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (29 bp):
TATATAAAATTAAACAAAATTAAAATTCA
Found at i:4329776 original size:151 final size:151
Alignment explanation
Indices: 4329502--4329798 Score: 407
Period size: 151 Copynumber: 2.0 Consensus size: 151
4329492 TTAGCTCAGC
*
4329502 CGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGGTTCGATTCCCACAGACGGCGTCGATTTT
1 CGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGGTTCGATTCCCACAGACGGCGTCGAGTTT
* * * * * *
4329567 TGCAACCTCTATTTTTGCATTTTTGTTTACCGAAGAGAAGATGAAGAATCCGATGATCCACTGTT
66 TGCAACCTCTATTTTTACATTTTTGCTTACCGAAGAGAAGAGGAAGAAACCGATGATCCACCGCT
*
4329632 ATGCTACTGTGCATCACCAGT
131 ATACTACTGTGCATCACCAGT
* * *
4329653 CGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGGTTCGATTCGCACAGATGGCGTTGAGTTT
1 CGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGGTTCGATTCCCACAGACGGCGTCGAGTTT
***** * *
4329718 TGTTGTTTCTA-TTTTACATTTTTGCTTACCGAAGAGAAGAGGGAGAACACCGGTGATCCACCGC
66 TGCAACCTCTATTTTTACATTTTTGCTTACCGAAGAGAAGAGGAAGAA-ACCGATGATCCACCGC
*
4329782 TATACTGCTGTGCATCA
130 TATACTACTGTGCATCA
4329799 TTAATCCGGC
Statistics
Matches: 126, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
150 32 0.25
151 94 0.75
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (151 bp):
CGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGGTTCGATTCCCACAGACGGCGTCGAGTTT
TGCAACCTCTATTTTTACATTTTTGCTTACCGAAGAGAAGAGGAAGAAACCGATGATCCACCGCT
ATACTACTGTGCATCACCAGT
Found at i:4330636 original size:74 final size:74
Alignment explanation
Indices: 4330512--4330659 Score: 278
Period size: 74 Copynumber: 2.0 Consensus size: 74
4330502 AAAAAAGAAA
4330512 GTATATATAGGTTCATCTGCTTGATTAGTTAACTTGAATTTACATAACTAGCTACATGCATGTAT
1 GTATATATAGGTTCATCTGCTTGATTAGTTAACTTGAATTTACATAACTAGCTACATGCATGTAT
4330577 GTATGCATG
66 GTATGCATG
* *
4330586 GTATATATAGGTTCATCTGCTTGATTAGTTAACTTGAATTTACATGACTAGCTCCATGCATGTAT
1 GTATATATAGGTTCATCTGCTTGATTAGTTAACTTGAATTTACATAACTAGCTACATGCATGTAT
4330651 GTATGCATG
66 GTATGCATG
4330660 ACATCCATAA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.39
Consensus pattern (74 bp):
GTATATATAGGTTCATCTGCTTGATTAGTTAACTTGAATTTACATAACTAGCTACATGCATGTAT
GTATGCATG
Found at i:4331172 original size:5 final size:5
Alignment explanation
Indices: 4331154--4331188 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
4331144 ATTTAAATTT
*
4331154 AAAAG AAAAAG AAAGG AAAAG AAAAG AAAAG AAAA
1 AAAAG -AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
4331189 AGGTTTTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:4342275 original size:24 final size:24
Alignment explanation
Indices: 4342248--4342309 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
4342238 GTACATGTAT
4342248 GCTCATATGAGTT-ATAAACGGTAA
1 GCTCATATGAGTTAAT-AACGGTAA
* * *
4342272 GCTCTTCTGAGCTGAATAACGGTAA
1 GCTCATATGAG-TTAATAACGGTAA
*
4342297 GCTCATACGAGTT
1 GCTCATATGAGTT
4342310 GAGTATCAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
24 10 0.34
25 17 0.59
26 2 0.07
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (24 bp):
GCTCATATGAGTTAATAACGGTAA
Found at i:4345834 original size:25 final size:25
Alignment explanation
Indices: 4345806--4345854 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
4345796 TAGGAAATAG
4345806 AAAG-AAAAAGAAAAAGAGAAAATTA
1 AAAGCAAAAAGAAAAAGA-AAAATTA
* *
4345831 AAAGCAAAAATAAAAATAAAAATT
1 AAAGCAAAAAGAAAAAGAAAAATT
4345855 CATGTGGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (25 bp):
AAAGCAAAAAGAAAAAGAAAAATTA
Found at i:4345846 original size:13 final size:12
Alignment explanation
Indices: 4345800--4345853 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 12
4345790 TTATCTTAGG
*
4345800 AAATAGAAAGAA
1 AAATAAAAAGAA
*
4345812 AAAGAAAAAGAGA
1 AAATAAAAAGA-A
*
4345825 AAATTAAAAGCAA
1 AAATAAAAAG-AA
*
4345838 AAATAAAAATAA
1 AAATAAAAAGAA
4345850 AAAT
1 AAAT
4345854 TCATGTGGAG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
12 15 0.44
13 18 0.53
14 1 0.03
ACGTcount: A:0.76, C:0.02, G:0.11, T:0.11
Consensus pattern (12 bp):
AAATAAAAAGAA
Found at i:4347013 original size:29 final size:29
Alignment explanation
Indices: 4346970--4347028 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
4346960 GGGTGTTTGT
*
4346970 ACATCAGCATGAGATAAACGTCTCACGTC
1 ACATCAGCATAAGATAAACGTCTCACGTC
4346999 ACATCAGCATAAGATAAACGTCTCACGTC
1 ACATCAGCATAAGATAAACGTCTCACGTC
4347028 A
1 A
4347029 TATGTTACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.20
Consensus pattern (29 bp):
ACATCAGCATAAGATAAACGTCTCACGTC
Found at i:4366774 original size:106 final size:106
Alignment explanation
Indices: 4366589--4366805 Score: 434
Period size: 106 Copynumber: 2.0 Consensus size: 106
4366579 TGTTACTTTC
4366589 AGAAAAGCTGGTAGAGGCATTGCTTTGAGATCTTGTCACAAAGAGGAGGAGGCTTATGCTTTTCT
1 AGAAAAGCTGGTAGAGGCATTGCTTTGAGATCTTGTCACAAAGAGGAGGAGGCTTATGCTTTTCT
4366654 ATTTCCTTTTGGACAATAACATGGGAAATAGTATTTGAAGA
66 ATTTCCTTTTGGACAATAACATGGGAAATAGTATTTGAAGA
4366695 AGAAAAGCTGGTAGAGGCATTGCTTTGAGATCTTGTCACAAAGAGGAGGAGGCTTATGCTTTTCT
1 AGAAAAGCTGGTAGAGGCATTGCTTTGAGATCTTGTCACAAAGAGGAGGAGGCTTATGCTTTTCT
4366760 ATTTCCTTTTGGACAATAACATGGGAAATAGTATTTGAAGA
66 ATTTCCTTTTGGACAATAACATGGGAAATAGTATTTGAAGA
4366801 AGAAA
1 AGAAA
4366806 GAAATTATAT
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 111 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (106 bp):
AGAAAAGCTGGTAGAGGCATTGCTTTGAGATCTTGTCACAAAGAGGAGGAGGCTTATGCTTTTCT
ATTTCCTTTTGGACAATAACATGGGAAATAGTATTTGAAGA
Found at i:4373910 original size:17 final size:17
Alignment explanation
Indices: 4373888--4373924 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
4373878 CGAATGCGAA
4373888 AAAAATAAACAATAAAT
1 AAAAATAAACAATAAAT
4373905 AAAAATAAACAATAAAT
1 AAAAATAAACAATAAAT
4373922 AAA
1 AAA
4373925 GAGTAAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (17 bp):
AAAAATAAACAATAAAT
Found at i:4374832 original size:44 final size:44
Alignment explanation
Indices: 4374780--4375200 Score: 249
Period size: 44 Copynumber: 9.6 Consensus size: 44
4374770 TTTAATCCGT
* *
4374780 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * * ** **
4374824 TCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCCTT-GGTCTGC
1 TCCACTGTAATCTCAGGGAGATAAGAT-T--ACTAGCTTCAATCTGC
* * * * * *
4374870 TCCACTGTAACCTCAGGGAGATAAGA--CCT-GATGCGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
** * * *
4374911 TCTGCTGTAA-CTTCAGGGAGATAAGATCCT-TTA-TTTTAATCTGC
1 TCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTCAATCTGC
* * * *
4374955 TCCACTGTAATCTCAGAGAAATAGGATTACTATCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * * ** *
4374999 TCCGCTGTAATCTCAGGGAGATAAGATCTGA-AATCTTTCGGTCCGC
1 TCCACTGTAATCTCAGGGAGATAAGAT-T-ACTAGC-TTCAATCTGC
* * * * *
4375045 TCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * * * * *
4375086 TCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCCGC
1 TCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTCAATCTGC
* *
4375130 TCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
4375174 TCCACTGTAATCTCAGGGAGATAAGAT
1 TCCACTGTAATCTCAGGGAGATAAGAT
4375201 CTGAAATTCT
Statistics
Matches: 284, Mismatches: 67, Indels: 52
0.70 0.17 0.13
Matches are distributed among these distances:
40 3 0.01
41 56 0.20
42 2 0.01
43 4 0.01
44 145 0.51
45 7 0.02
46 62 0.22
47 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
Found at i:4375049 original size:175 final size:174
Alignment explanation
Indices: 4374733--4375207 Score: 790
Period size: 175 Copynumber: 2.7 Consensus size: 174
4374723 GGCTTCAATG
* *
4374733 TACTCTACTGTAATCTT-AGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGG
1 TACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGG
* * *
4374797 GAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCCT
65 GAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA-TCCT
*
4374862 TGGTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
129 TGGTCCGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
* * * *
4374908 TACTCTGCTGTAACTTCAGGGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGAG
1 TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
* *
4374973 AAATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATCTTTC
66 AGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATCCTT-
*
4375038 GGTCCGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
130 GGTCCGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
4375083 TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
1 TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
*
4375148 AGATAGGATTACTATCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAAT
66 AGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
4375208 TCTTCGATCT
Statistics
Matches: 279, Mismatches: 19, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
174 7 0.03
175 272 0.97
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (174 bp):
TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
AGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATCCTTG
GTCCGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATC
Found at i:4406928 original size:45 final size:44
Alignment explanation
Indices: 4406874--4406960 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
4406864 TTATTTTTAA
4406874 ATTAGCACAATCATAAATTAAATTC-TAATTATTTTTAAATGTGTT
1 ATTAGCACAAT-ATAAATTAAA-TCATAATTATTTTTAAATGTGTT
* * **
4406919 ATTATCACAATTTCTATTAAATCATAATTATTTTTAAATGTG
1 ATTAGCACAATATAAATTAAATCATAATTATTTTTAAATGTG
4406961 AATTTAGTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 2 0.05
44 25 0.68
45 10 0.27
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (44 bp):
ATTAGCACAATATAAATTAAATCATAATTATTTTTAAATGTGTT
Found at i:4409266 original size:10 final size:10
Alignment explanation
Indices: 4409247--4409276 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
4409237 TATCAAGGTG
*
4409247 TTTTTGAGTA
1 TTTTTAAGTA
4409257 TTTTTAAGTA
1 TTTTTAAGTA
4409267 TTTTTAAGTA
1 TTTTTAAGTA
4409277 CAAGATCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (10 bp):
TTTTTAAGTA
Found at i:4410592 original size:31 final size:32
Alignment explanation
Indices: 4410557--4410631 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 32
4410547 AAGAAAACAT
*
4410557 TTGACA-GCTTTGGCGAATAAAAAAGCTCCAC
1 TTGACATGCTTTGGCGAATAAAAAAGCGCCAC
* ** *
4410588 TTGACATGTTTTGGTTAATGAAAAAGCGCCAC
1 TTGACATGCTTTGGCGAATAAAAAAGCGCCAC
* *
4410620 TTGGCATCCTTT
1 TTGACATGCTTT
4410632 TATAAAATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 6 0.17
32 29 0.83
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (32 bp):
TTGACATGCTTTGGCGAATAAAAAAGCGCCAC
Found at i:4410746 original size:16 final size:19
Alignment explanation
Indices: 4410709--4410749 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
4410699 TTTATGTTTT
4410709 TTTATAATTTATTTTCATA
1 TTTATAATTTATTTTCATA
4410728 TTTATAATTT-TTTT-A-A
1 TTTATAATTTATTTTCATA
4410744 TTTATA
1 TTTATA
4410750 TATACTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.32
17 1 0.05
18 4 0.18
19 10 0.45
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTATAATTTATTTTCATA
Found at i:4413176 original size:15 final size:14
Alignment explanation
Indices: 4413143--4413172 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
4413133 CTAATACCTG
4413143 AATTAAATATTAAA
1 AATTAAATATTAAA
4413157 AATTAAATATTAAA
1 AATTAAATATTAAA
4413171 AA
1 AA
4413173 ATTATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AATTAAATATTAAA
Found at i:4413180 original size:11 final size:11
Alignment explanation
Indices: 4413164--4413195 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
4413154 AAAAATTAAA
4413164 TATTAAAAAAT
1 TATTAAAAAAT
4413175 TATTAAAAAAT
1 TATTAAAAAAT
4413186 TATTAAAAAA
1 TATTAAAAAA
4413196 ATGTTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TATTAAAAAAT
Found at i:4413202 original size:11 final size:11
Alignment explanation
Indices: 4413147--4413203 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
4413137 TACCTGAATT
4413147 AAATATTAAAAA
1 AAATATT-AAAA
4413159 TTAAATATTAAAA
1 --AAATATTAAAA
*
4413172 AATTATTAAAA
1 AAATATTAAAA
*
4413183 AATTATTAAAA
1 AAATATTAAAA
*
4413194 AAATGTTAAA
1 AAATATTAAA
4413204 TTTAAGTACC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
11 29 0.73
13 4 0.10
14 7 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (11 bp):
AAATATTAAAA
Found at i:4415288 original size:17 final size:17
Alignment explanation
Indices: 4415266--4415299 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4415256 ATAATGAAGA
4415266 ATCATTGAGGAGGTTAT
1 ATCATTGAGGAGGTTAT
4415283 ATCATTGAGGAGGTTAT
1 ATCATTGAGGAGGTTAT
4415300 CAGCAACAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35
Consensus pattern (17 bp):
ATCATTGAGGAGGTTAT
Found at i:4426914 original size:20 final size:21
Alignment explanation
Indices: 4426873--4426915 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
4426863 TATTAGTATG
*
4426873 ATAAAAATAATTTCTAAACAA
1 ATAAAAATAATTTCAAAACAA
4426894 ATAAAAA-AATTT-AAAATCAA
1 ATAAAAATAATTTCAAAA-CAA
4426914 AT
1 AT
4426916 CATCATATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 10 0.50
21 7 0.35
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (21 bp):
ATAAAAATAATTTCAAAACAA
Found at i:4429464 original size:28 final size:25
Alignment explanation
Indices: 4429418--4429476 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 25
4429408 GTTTATAAAG
*
4429418 TTTTATAAAAGCTGTATAATATATATAT
1 TTTTATAAAAGCTGCATAA-AT-TAT-T
4429446 TTTTATAAAA-CTTGCATAAATTATT
1 TTTTATAAAAGC-TGCATAAATTATT
4429471 TTTTAT
1 TTTTAT
4429477 TTGGATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 7 0.24
26 3 0.10
27 3 0.10
28 16 0.55
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (25 bp):
TTTTATAAAAGCTGCATAAATTATT
Found at i:4438163 original size:21 final size:21
Alignment explanation
Indices: 4438134--4438183 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
4438124 TTTTAAAAAC
*
4438134 TTTTCCTTTCTTCT-AGTTCTT
1 TTTTTCTTTCTT-TGAGTTCTT
*
4438155 TTTTTCTTT-TTTGATTTCTT
1 TTTTTCTTTCTTTGAGTTCTT
4438175 TTTTT-TTTC
1 TTTTTCTTTC
4438184 CCCACTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 4 0.16
20 13 0.52
21 8 0.32
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (21 bp):
TTTTTCTTTCTTTGAGTTCTT
Found at i:4446068 original size:30 final size:28
Alignment explanation
Indices: 4445995--4446104 Score: 73
Period size: 30 Copynumber: 3.8 Consensus size: 28
4445985 AAAAGTTACA
* **
4445995 TAAATTTTTTTAGGTTCTTCAAAAGTTGG
1 TAAATTTTTTTTGGCCCTT-AAAAGTTGG
* * *
4446024 TAAAAGTATATTTGGACCCTTAAAAGTTGG
1 T-AAATTTTTTTTGG-CCCTTAAAAGTTGG
**
4446054 TAAACTTTTTTTTGGCTTTTAAAAG-T--
1 TAAA-TTTTTTTTGGCCCTTAAAAGTTGG
4446080 TAAATTTTTTTTGAGCCCCTTAAAA
1 TAAATTTTTTTTG-G-CCCTTAAAA
4446105 TTAAAAAATA
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
25 9 0.14
26 5 0.08
27 7 0.11
28 1 0.02
29 12 0.19
30 26 0.41
31 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.45
Consensus pattern (28 bp):
TAAATTTTTTTTGGCCCTTAAAAGTTGG
Found at i:4459406 original size:10 final size:10
Alignment explanation
Indices: 4459381--4459413 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
4459371 TTTAATTAAA
4459381 ATTTAAAAAT
1 ATTTAAAAAT
*
4459391 -TTTAAAAGT
1 ATTTAAAAAT
4459400 ATTTAAAAAT
1 ATTTAAAAAT
4459410 ATTT
1 ATTT
4459414 TTTATACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (10 bp):
ATTTAAAAAT
Found at i:4459633 original size:23 final size:23
Alignment explanation
Indices: 4459607--4459676 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
4459597 TTTATTTAAC
*
4459607 TTAATCGAATATGTTCACAAACA
1 TTAATCGAACATGTTCACAAACA
* *
4459630 TTAAACTAACATGTTCACAAACA
1 TTAATCGAACATGTTCACAAACA
* *
4459653 TATAATTGAACATGTTCACGAACA
1 T-TAATCGAACATGTTCACAAACA
4459677 ATGTTAATGA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 21 0.54
24 18 0.46
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.29
Consensus pattern (23 bp):
TTAATCGAACATGTTCACAAACA
Found at i:4459888 original size:18 final size:19
Alignment explanation
Indices: 4459865--4459906 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
4459855 ACGTATACAC
4459865 TTTTT-AAATAATTTTTA-A
1 TTTTTAAAAT-ATTTTTATA
4459883 TTTTTAAAATATTTTTATA
1 TTTTTAAAATATTTTTATA
4459902 TTTTT
1 TTTTT
4459907 TTTGTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTAAAATATTTTTATA
Found at i:4460467 original size:27 final size:28
Alignment explanation
Indices: 4460430--4460483 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
4460420 TACATTATTT
4460430 AAATTTCAGTTTTTGATA-TCTAAAATTG
1 AAATTTCAGTTTTT-ATATTCTAAAATTG
*
4460458 AAATTT-AGTTTTTATATTTTAAAATT
1 AAATTTCAGTTTTTATATTCTAAAATT
4460484 TCATATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 3 0.12
27 15 0.62
28 6 0.25
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (28 bp):
AAATTTCAGTTTTTATATTCTAAAATTG
Found at i:4461521 original size:21 final size:21
Alignment explanation
Indices: 4461495--4461535 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
4461485 TGAGTATATT
4461495 TTTTTTTTAATTTTTAGAATA
1 TTTTTTTTAATTTTTAGAATA
4461516 TTTTTTTTAATTTTTAGAAT
1 TTTTTTTTAATTTTTAGAAT
4461536 GTCATATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTTTTTTAATTTTTAGAATA
Found at i:4463555 original size:20 final size:20
Alignment explanation
Indices: 4463526--4463579 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
4463516 GGGGCACATG
*
4463526 CCCGTGTGGCCTGGGACACC
1 CCCGTGTGGCCTGGAACACC
* **
4463546 CCCGTATGGCCTGGAACATG
1 CCCGTGTGGCCTGGAACACC
4463566 CCCGTGTGGCCTGG
1 CCCGTGTGGCCTGG
4463580 CCATGAGCAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.11, C:0.35, G:0.35, T:0.19
Consensus pattern (20 bp):
CCCGTGTGGCCTGGAACACC
Found at i:4472147 original size:138 final size:138
Alignment explanation
Indices: 4471889--4472162 Score: 458
Period size: 138 Copynumber: 2.0 Consensus size: 138
4471879 GACGCTACCG
* * *
4471889 ATGCTGATATCTCGTTAGAATTGTCTCTTTCAATGAATAAACCCCCAAGGGTTGAAGTCGGCGAA
1 ATGCCGATAGCTCGTTAGAATGGTCTCTTTCAATGAATAAACCCCCAAGGGTTGAAGTCGGCGAA
* * * *
4471954 CGTAACAATCATTATAAACTGAATATCAATGAAGCCCTTACTTTGGCAACTACGAGTGATAATTT
66 CGTAACAATCATCATAAACTGAAGATCAATGAAGCCCTTACTTTAGCAACTACGAGTGATAAGTT
4472019 TACATCCA
131 TACATCCA
* * *
4472027 ATGCCGATAGCTCGTTAGAATGGTCTCTTTCAATGAATAAACCCCCAGGGGTTGAAGTTGGTGAA
1 ATGCCGATAGCTCGTTAGAATGGTCTCTTTCAATGAATAAACCCCCAAGGGTTGAAGTCGGCGAA
4472092 CGTAACAATCATCATAAACTGAAGATCAATGAAGCCCTTACTTTAGCAACTACGAGTGATAAGTT
66 CGTAACAATCATCATAAACTGAAGATCAATGAAGCCCTTACTTTAGCAACTACGAGTGATAAGTT
4472157 TACATC
131 TACATC
4472163 GAAGAAAAGA
Statistics
Matches: 126, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 126 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (138 bp):
ATGCCGATAGCTCGTTAGAATGGTCTCTTTCAATGAATAAACCCCCAAGGGTTGAAGTCGGCGAA
CGTAACAATCATCATAAACTGAAGATCAATGAAGCCCTTACTTTAGCAACTACGAGTGATAAGTT
TACATCCA
Found at i:4472205 original size:138 final size:137
Alignment explanation
Indices: 4471919--4472197 Score: 323
Period size: 138 Copynumber: 2.0 Consensus size: 137
4471909 TTGTCTCTTT
* *
4471919 CAATGAATAAACCCCCAAGGGTTGAAGTCGGCGAACGTAACAATCATTATAAACTGAATATCAAT
1 CAATGAATAAACCCCCAAGGGTTGAAGTCGGCGAACGTAACAATCATCATAAACTGAAGATCAAT
* * * * * ** *
4471984 GAAGCCCTTACTTTGGCAACTACGAGTGATAATTTTACATCCAATGCCGATAGCTCGTTAGAATG
66 GAAGCCCTTACTTTAGCAACTACGAGTGATAAGTTTACATCCAATG-CAAAAGCACGAAACAATG
*** **
4472049 GTCTCTTT
130 GAAACTGA
* * *
4472057 CAATGAATAAACCCCCAGGGGTTGAAGTTGGTGAACGTAACAATCATCATAAACTGAAGATCAAT
1 CAATGAATAAACCCCCAAGGGTTGAAGTCGGCGAACGTAACAATCATCATAAACTGAAGATCAAT
*
4472122 GAAGCCCTTACTTTAGCAACTACGAGTGATAAGTTTACATCGAA-G-AAAAG-AC-AAACAATGG
66 GAAGCCCTTACTTTAGCAACTACGAGTGATAAGTTTACATCCAATGCAAAAGCACGAAACAAT--
4472183 GGAAACTGA
129 GGAAACTGA
4472192 CGAATG
1 C-AATG
4472198 GAAATAAAAG
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
133 4 0.03
134 1 0.01
135 8 0.07
136 4 0.03
137 1 0.01
138 101 0.85
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (137 bp):
CAATGAATAAACCCCCAAGGGTTGAAGTCGGCGAACGTAACAATCATCATAAACTGAAGATCAAT
GAAGCCCTTACTTTAGCAACTACGAGTGATAAGTTTACATCCAATGCAAAAGCACGAAACAATGG
AAACTGA
Found at i:4483967 original size:44 final size:44
Alignment explanation
Indices: 4483904--4483990 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
4483894 CGGAATTACA
4483904 TCTCTTATAGCCCAGAAATGATGCATAGCATAATATTGGATATT
1 TCTCTTATAGCCCAGAAATGATGCATAGCATAATATTGGATATT
4483948 TCTCTTATAGCCCAGAAATGATGCATAGCATAATATTGGATAT
1 TCTCTTATAGCCCAGAAATGATGCATAGCATAATATTGGATAT
4483991 CGCTAGGACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (44 bp):
TCTCTTATAGCCCAGAAATGATGCATAGCATAATATTGGATATT
Found at i:4491710 original size:18 final size:18
Alignment explanation
Indices: 4491679--4491716 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
4491669 CTTTTGGCCA
*
4491679 TCCTCATCAGCATCATTT
1 TCCTCATCAGCATCACTT
4491697 TCCTCATC-GTCATCACTT
1 TCCTCATCAG-CATCACTT
4491715 TC
1 TC
4491717 TGAATCTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.18, C:0.37, G:0.05, T:0.39
Consensus pattern (18 bp):
TCCTCATCAGCATCACTT
Found at i:4492212 original size:29 final size:29
Alignment explanation
Indices: 4492179--4492236 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
4492169 CAACTTTACG
4492179 AGCAATCTGAAAGAGAGCAACATAAGCTT
1 AGCAATCTGAAAGAGAGCAACATAAGCTT
4492208 AGCAATCTGAAAGAGAGCAACATAAGCTT
1 AGCAATCTGAAAGAGAGCAACATAAGCTT
4492237 TGTTTCTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (29 bp):
AGCAATCTGAAAGAGAGCAACATAAGCTT
Found at i:4512195 original size:24 final size:23
Alignment explanation
Indices: 4512139--4512196 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
4512129 AAAATCTAGC
* * *
4512139 TAATATCATTATATTTTTAGAGA
1 TAATATTATTATAATTTTAAAGA
*
4512162 TAAAATTTATTAATAATTTTAAAGA
1 TAATA-TTATT-ATAATTTTAAAGA
4512187 TAATATTATT
1 TAATATTATT
4512197 GAGAGAGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 4 0.14
24 9 0.32
25 15 0.54
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (23 bp):
TAATATTATTATAATTTTAAAGA
Found at i:4512691 original size:2 final size:2
Alignment explanation
Indices: 4512686--4512711 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4512676 ATATACACAC
4512686 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
4512712 GGAGTAGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4514167 original size:28 final size:28
Alignment explanation
Indices: 4514127--4514180 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
4514117 GGTCCAGTTC
*
4514127 AAACATTCTTAGATAATTGTGGTTGTCG
1 AAACATTCTTAGATAATTGCGGTTGTCG
4514155 AAACATTCTTAGATAATTGCGGTTGT
1 AAACATTCTTAGATAATTGCGGTTGT
4514181 TGATGAACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (28 bp):
AAACATTCTTAGATAATTGCGGTTGTCG
Found at i:4524456 original size:51 final size:51
Alignment explanation
Indices: 4524374--4524534 Score: 182
Period size: 51 Copynumber: 3.1 Consensus size: 51
4524364 GGATACAATA
* * * *
4524374 TTTTCAACTTGAGAGCATGATATTCATTTATTTGAGCAAAGAATCCACC-TT
1 TTTTCAACTTGAGAGCAAGTTATCCATTTATTTGTGCAAA-AATCCACCTTT
* *
4524425 TTTTCAACTTGAGAGCAAGTTGTCCAATTATTTGTGCAAAAATTCCACCTTTTT
1 TTTTCAACTTGAGAGCAAGTTATCCATTTATTTGTGCAAAAA-TCCACC--TTT
* *
4524479 TTTTCAATTTGAGAGCAAGTTTTCCATTTATTTGTGCAAAAAATCCA-CTATT
1 TTTTCAACTTGAGAGCAAGTTATCCATTTATTTGTGC-AAAAATCCACCT-TT
4524531 TTTT
1 TTTT
4524535 GTTTCAACAA
Statistics
Matches: 95, Mismatches: 9, Indels: 11
0.83 0.08 0.10
Matches are distributed among these distances:
50 2 0.02
51 41 0.43
52 6 0.06
53 1 0.01
54 40 0.42
55 5 0.05
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (51 bp):
TTTTCAACTTGAGAGCAAGTTATCCATTTATTTGTGCAAAAATCCACCTTT
Found at i:4524510 original size:54 final size:53
Alignment explanation
Indices: 4524374--4524542 Score: 193
Period size: 54 Copynumber: 3.2 Consensus size: 53
4524364 GGATACAATA
* * *
4524374 TTTTCAACTTGAGAGCATGATATT-CATTTATTTGAGCAAAGAATCCACC---TT
1 TTTTCAACTTGAGAGCAAG-TTTTCCATTTATTTGTGCAAA-AATCCACCTTTTT
* *
4524425 TTTTCAACTTGAGAGCAAGTTGTCCAATTATTTGTGCAAAAATTCCACCTTTTT
1 TTTTCAACTTGAGAGCAAGTTTTCCATTTATTTGTGCAAAAA-TCCACCTTTTT
* *
4524479 TTTTCAATTTGAGAGCAAGTTTTCCATTTATTTGTGCAAAAAATCCACTATTTTT
1 TTTTCAACTTGAGAGCAAGTTTTCCATTTATTTGTGC-AAAAATCCAC-CTTTTT
4524534 TGTTTCAAC
1 T-TTTCAAC
4524543 AAGGAAAAAA
Statistics
Matches: 100, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
50 4 0.04
51 38 0.38
54 41 0.41
55 11 0.11
56 6 0.06
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (53 bp):
TTTTCAACTTGAGAGCAAGTTTTCCATTTATTTGTGCAAAAATCCACCTTTTT
Found at i:4541673 original size:23 final size:22
Alignment explanation
Indices: 4541620--4541674 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
4541610 GGGCACCCCG
* *
4541620 TCTA-AATATAGAATTATTTTT
1 TCTATAATTTAGAATTATTTTA
*
4541641 TCTATAATTTAGATTTATTTTA
1 TCTATAATTTAGAATTATTTTA
4541663 TCATATAATTTA
1 TC-TATAATTTA
4541675 TTAAAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 4 0.14
22 16 0.55
23 9 0.31
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (22 bp):
TCTATAATTTAGAATTATTTTA
Found at i:4542026 original size:16 final size:15
Alignment explanation
Indices: 4541990--4542028 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
4541980 TTACTGCATT
*
4541990 TTATTTTTAAAATAA
1 TTATTATTAAAATAA
4542005 TATATTATTAAAATAAA
1 T-TATTATTAAAAT-AA
4542022 TTATTAT
1 TTATTAT
4542029 AATTATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 17 0.81
17 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTATTATTAAAATAA
Found at i:4542931 original size:23 final size:24
Alignment explanation
Indices: 4542898--4542943 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
4542888 TCGAAGCAAT
*
4542898 CCAAACTATTTAA-AATAATTCAA
1 CCAAACAATTTAACAATAATTCAA
4542921 CCAAACAATTTAACAATAATTCA
1 CCAAACAATTTAACAATAATTCA
4542944 TAATAATCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.52, C:0.20, G:0.00, T:0.28
Consensus pattern (24 bp):
CCAAACAATTTAACAATAATTCAA
Found at i:4544600 original size:22 final size:22
Alignment explanation
Indices: 4544575--4544616 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
4544565 TAGTCATATA
4544575 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
4544597 ATAATTTATTATTTTAATAA
1 ATAAATTATTAATATAATAA
4544617 TTATTTAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:4544662 original size:16 final size:16
Alignment explanation
Indices: 4544640--4544676 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
4544630 CAATTTATTT
4544640 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
4544657 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
4544672 TAATA
1 TAATA
4544677 CTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:4545243 original size:14 final size:13
Alignment explanation
Indices: 4545224--4545264 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
4545214 TCAGAAAAGT
4545224 AAATCATTTTCTAG
1 AAATCATTTTC-AG
*
4545238 AAATCATTTTCCG
1 AAATCATTTTCAG
4545251 AAAGTCATTTTCAG
1 AAA-TCATTTTCAG
4545265 TGAAACAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (13 bp):
AAATCATTTTCAG
Found at i:4546520 original size:13 final size:13
Alignment explanation
Indices: 4546488--4546519 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
4546478 ATATAAAAAA
4546488 TTATTTTAATTTT
1 TTATTTTAATTTT
4546501 TTATTTTAA-TTT
1 TTATTTTAATTTT
4546513 TTATTTT
1 TTATTTT
4546520 TTTTAGTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTATTTTAATTTT
Found at i:4550686 original size:18 final size:19
Alignment explanation
Indices: 4550647--4550687 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
4550637 ATTATTTGAA
*
4550647 TATTGTATAATTCTTATTT
1 TATTGTATAATTCTTATAT
4550666 TATTGT-TAATT-TTACTAT
1 TATTGTATAATTCTTA-TAT
4550684 TATT
1 TATT
4550688 TTAGAGACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 3 0.15
18 11 0.55
19 6 0.30
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (19 bp):
TATTGTATAATTCTTATAT
Found at i:4559714 original size:54 final size:54
Alignment explanation
Indices: 4559646--4559753 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
4559636 CTAAGTTGTT
* *
4559646 GGGCTTGGTGTGTGGAGGAGATGGGAAAGAGGTGGTTGCTGC-CACGGGCGGCGG
1 GGGCTTGGTATGTGGAGGAGATGGGAAAAAGGTGGTTGCTGCAC-CGGGCGGCGG
*
4559700 GGGCTTGGTATGTGGAGGAGATGGGAAAAAGGTGGTTGGTGCACCGGGCGGCGG
1 GGGCTTGGTATGTGGAGGAGATGGGAAAAAGGTGGTTGCTGCACCGGGCGGCGG
4559754 AGCTGGAACA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
54 49 0.98
55 1 0.02
ACGTcount: A:0.17, C:0.12, G:0.53, T:0.19
Consensus pattern (54 bp):
GGGCTTGGTATGTGGAGGAGATGGGAAAAAGGTGGTTGCTGCACCGGGCGGCGG
Found at i:4560514 original size:195 final size:195
Alignment explanation
Indices: 4560182--4560572 Score: 710
Period size: 195 Copynumber: 2.0 Consensus size: 195
4560172 GTAAAAGCAG
*
4560182 CAGACAAAGTGGTGGACATGCCGGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTCTGCC
1 CAGACAAAGTGGTGGACATGCCGGAGTGGTTATCGGGCATGACAAGAAATCATGTGGGCTCTGCC
*
4560247 CGCGCAGGTTCGAATCCTGCCGTTCACGAATGATATTTCTTTTTATTGCTTTGCTGTTGCCTTTG
66 CGCGCAGGTTCGAATCCTGCCGTTCACGAATGATATTTCTTTTTATTGCTTTGCTGTTGCCTGTG
* *
4560312 GCTGCAACTGCAACCATTATCTTTGTGACCGAGGATAACGGCCTAGTGCTTGAGCAGCCATTGTT
131 GCTGCAACTGCAACCATTATCTTTGTGACCGAGGAAAACGGCCTAGTGCTTGAGCAGCCATCGTT
*
4560377 CAGACAAAGTGGTGGACGTGCCGGAGTGGTTATCGGGCATGACAAGAAATCATGTGGGCTCTGCC
1 CAGACAAAGTGGTGGACATGCCGGAGTGGTTATCGGGCATGACAAGAAATCATGTGGGCTCTGCC
* *
4560442 CGCGCAGGTTTGAATCCTGCCGTTCACGAATGATATTTCTTTTTATTGCTTTGCTGTTTCCTGTG
66 CGCGCAGGTTCGAATCCTGCCGTTCACGAATGATATTTCTTTTTATTGCTTTGCTGTTGCCTGTG
*
4560507 GCTGCAACTGCAACCATTATCTTTGTGACTGAGGAAAACGGCCTAGTGCTTGAGCAGCCATCGTT
131 GCTGCAACTGCAACCATTATCTTTGTGACCGAGGAAAACGGCCTAGTGCTTGAGCAGCCATCGTT
4560572 C
1 C
4560573 TTGTTTCTCT
Statistics
Matches: 188, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
195 188 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.30
Consensus pattern (195 bp):
CAGACAAAGTGGTGGACATGCCGGAGTGGTTATCGGGCATGACAAGAAATCATGTGGGCTCTGCC
CGCGCAGGTTCGAATCCTGCCGTTCACGAATGATATTTCTTTTTATTGCTTTGCTGTTGCCTGTG
GCTGCAACTGCAACCATTATCTTTGTGACCGAGGAAAACGGCCTAGTGCTTGAGCAGCCATCGTT
Found at i:4563850 original size:12 final size:11
Alignment explanation
Indices: 4563812--4563849 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
4563802 ATATGAATGC
4563812 AAAAAAAA-AA
1 AAAAAAAAGAA
4563822 AAAAAAAAGAA
1 AAAAAAAAGAA
*
4563833 AGAAAGAAAGAA
1 A-AAAAAAAGAA
4563845 AAAAA
1 AAAAA
4563850 GGCATTAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 8 0.33
11 6 0.25
12 10 0.42
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:4565399 original size:19 final size:19
Alignment explanation
Indices: 4565353--4565400 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
4565343 GTATATATTT
*
4565353 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGCAGA
*
4565371 TAAATCTTATTTAGGCAGA
1 TAAATTTTATTTAGGCAGA
4565390 TAAATTTTATT
1 TAAATTTTATT
4565401 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGCAGA
Found at i:4565483 original size:42 final size:42
Alignment explanation
Indices: 4565424--4565507 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
4565414 TATTTTTATT
*
4565424 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTTCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGAGAACTATTTTTCC
*
4565466 TTATGTTTTAGTAGTTTATTAGAATAAGAGAACTATTTTTCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGAGAACTATTTTTCC
4565508 ATTTAGGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.48
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAGAATAAGAGAACTATTTTTCC
Found at i:4567894 original size:54 final size:54
Alignment explanation
Indices: 4567812--4567921 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
4567802 GAGGGTGTTG
*
4567812 AAATATGTATATATTTTAAATTTATTTAGGTAGATAAATCTTCTTTAGGAAGAT
1 AAATATGTATATATTTTAAATTTATTTAGGTAGATAAATCTTATTTAGGAAGAT
4567866 AAATATGTATATATTTTAAATTTATTTAGGTAGATAAATCTTATTTAGGAAGAT
1 AAATATGTATATATTTTAAATTTATTTAGGTAGATAAATCTTATTTAGGAAGAT
4567920 AA
1 AA
4567922 GTTTTATTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.44
Consensus pattern (54 bp):
AAATATGTATATATTTTAAATTTATTTAGGTAGATAAATCTTATTTAGGAAGAT
Found at i:4567911 original size:19 final size:18
Alignment explanation
Indices: 4567828--4567921 Score: 77
Period size: 19 Copynumber: 5.2 Consensus size: 18
4567818 GTATATATTT
4567828 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
* *
4567846 TAAATCTTCTTTAGGAAGA
1 TAAAT-TTATTTAGGTAGA
* **
4567865 TAAATATGTATATA--T-TT
1 TAAAT-T-TATTTAGGTAGA
4567882 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
*
4567900 TAAATCTTATTTAGGAAGA
1 TAAAT-TTATTTAGGTAGA
4567919 TAA
1 TAA
4567922 GTTTTATTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 11
0.72 0.15 0.14
Matches are distributed among these distances:
15 5 0.09
16 1 0.02
17 6 0.10
18 10 0.17
19 32 0.55
20 4 0.07
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.43
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:4567928 original size:19 final size:19
Alignment explanation
Indices: 4567882--4567929 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
4567872 GTATATATTT
*
4567882 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
*
4567900 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAGGAAGA
*
4567919 TAAGTTTTATT
1 TAAATTTTATT
4567930 CATATTCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:4586651 original size:52 final size:51
Alignment explanation
Indices: 4586588--4586722 Score: 171
Period size: 52 Copynumber: 2.6 Consensus size: 51
4586578 GACGGGAAAG
* *
4586588 ATGTAATATGTGCTTTCGTATAAGACCATAGCAGGGCTATGGCATCGGTACA
1 ATGTGATATGTG-TTCCGTATAAGACCATAGCAGGGCTATGGCATCGGTACA
* ***
4586640 ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATATGTGTT-CCGTATAAGACCATAGCAGGGCTATGGCATCGGTACA
*
4586692 ATGTGATAATGTGATTCCGTATAATACCATA
1 ATGTGAT-ATGTG-TTCCGTATAAGACCATA
4586723 TTTAGGATAT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
51 2 0.03
52 50 0.68
53 19 0.26
54 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (51 bp):
ATGTGATATGTGTTCCGTATAAGACCATAGCAGGGCTATGGCATCGGTACA
Found at i:4607491 original size:122 final size:120
Alignment explanation
Indices: 4607272--4607493 Score: 354
Period size: 122 Copynumber: 1.8 Consensus size: 120
4607262 TAAAATAGGC
*
4607272 ACAATGCTCATTTGTTCTTACTGCCATATATACATTATCCCATCTCAAAAGAGTACACATGATGA
1 ACAATGCTCATTTGTTCTGACTGCCATATATACATTATCCCATCTCAAAAGAGTACACATGATGA
* *
4607337 CGACATCCAAAACATCAACCTCGAACAGTTGTACTAAAGTAAAACAATTCTCATG
66 CAACATCCAAAACATCAACCTCGAACAATTGTACTAAAGTAAAACAATTCTCATG
* ** *
4607392 ACAATGCTCATTTTTTCTGACTGCCGTATATATGGATTATCCCATCTCAAAAGAGTACACATGTT
1 ACAATGCTCATTTGTTCTGACTGCC--ATATATACATTATCCCATCTCAAAAGAGTACACATGAT
*
4607457 GACAACATCCAAAACATCACCCTCGAACAATTGTACT
64 GACAACATCCAAAACATCAACCTCGAACAATTGTACT
4607494 CTAAACATCA
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
120 23 0.25
122 69 0.75
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (120 bp):
ACAATGCTCATTTGTTCTGACTGCCATATATACATTATCCCATCTCAAAAGAGTACACATGATGA
CAACATCCAAAACATCAACCTCGAACAATTGTACTAAAGTAAAACAATTCTCATG
Found at i:4612535 original size:24 final size:24
Alignment explanation
Indices: 4612486--4612536 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
4612476 GTAGAAATTT
* *
4612486 TAATTTTAGATCTTTTCCATAGAA
1 TAATTTTAGATCTTTTCAAAAGAA
*
4612510 TAATTTTAGAT-TTTTTAAAAGTAA
1 TAATTTTAGATCTTTTCAAAAG-AA
4612534 TAA
1 TAA
4612537 ACTGTCGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (24 bp):
TAATTTTAGATCTTTTCAAAAGAA
Found at i:4612826 original size:19 final size:20
Alignment explanation
Indices: 4612785--4612828 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
4612775 TGTTTTTTGA
* * *
4612785 ATTTTCCTATTTTTTTCTTT
1 ATTTTCCTATTCTCTTCTCT
4612805 ATTTTCC-ATTCTCTTCTCT
1 ATTTTCCTATTCTCTTCTCT
4612824 ATTTT
1 ATTTT
4612829 TTTAAACGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTTCCTATTCTCTTCTCT
Found at i:4613980 original size:21 final size:22
Alignment explanation
Indices: 4613940--4613981 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
4613930 CAAAATATAT
*
4613940 ATATTTATTTAATATATAAATG
1 ATATTTATTAAATATATAAATG
*
4613962 ATATTT-TTAAATATTTAAAT
1 ATATTTATTAAATATATAAAT
4613982 AATTTAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATATTTATTAAATATATAAATG
Found at i:4614035 original size:17 final size:18
Alignment explanation
Indices: 4613991--4614042 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 18
4613981 TAATTTAATG
4613991 AAAATA-TTTTTTA-TCT
1 AAAATATTTTTTTATTCT
4614007 AAAAATATTTTTTTTATTCT
1 -AAAATA-TTTTTTTATTCT
4614027 -AAATATTTTTATTATT
1 AAAATATTTTT-TTATT
4614043 AAGTGGATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 11 0.35
18 10 0.32
19 7 0.23
20 3 0.10
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (18 bp):
AAAATATTTTTTTATTCT
Found at i:4614482 original size:26 final size:26
Alignment explanation
Indices: 4614428--4614483 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
4614418 GTGTATGTTT
* * *
4614428 AATATTATCGAAAATTATTATTTTTA
1 AATATTATCGAAAATTATAATATTAA
*
4614454 AATATTATCTAAAATTATAATATTAA
1 AATATTATCGAAAATTATAATATTAA
4614480 AATA
1 AATA
4614484 AATTTATGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (26 bp):
AATATTATCGAAAATTATAATATTAA
Found at i:4615179 original size:30 final size:30
Alignment explanation
Indices: 4615145--4615206 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
4615135 ACTTATTTTA
*
4615145 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAAATTTGTTATTATTTTAAAGACAT
* *
4615175 TTGTTAAATTTGTTTTTATTTTAGAGACAT
1 TTGTTAAATTTGTTATTATTTTAAAGACAT
4615205 TT
1 TT
4615207 TTGCTTGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.58
Consensus pattern (30 bp):
TTGTTAAATTTGTTATTATTTTAAAGACAT
Found at i:4616914 original size:19 final size:19
Alignment explanation
Indices: 4616890--4616928 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
4616880 AAACTATAAA
4616890 ATTATTAA-ATTATAAAAAT
1 ATTATTAATA-TATAAAAAT
*
4616909 ATTATTGATATATAAAAAT
1 ATTATTAATATATAAAAAT
4616928 A
1 A
4616929 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTATTAATATATAAAAAT
Found at i:4617080 original size:21 final size:21
Alignment explanation
Indices: 4617038--4617088 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
4617028 AAATTTACTT
* **
4617038 AAAATTATTAAAATGATAAAA
1 AAAATTATAAAAACCATAAAA
*
4617059 AAAATTATAAAAACCATTAAA
1 AAAATTATAAAAACCATAAAA
*
4617080 ACAATTATA
1 AAAATTATA
4617089 GAAATTTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (21 bp):
AAAATTATAAAAACCATAAAA
Found at i:4619550 original size:18 final size:19
Alignment explanation
Indices: 4619508--4619544 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
4619498 TATCATACTG
4619508 ATAATTTTTATAATAATTA
1 ATAATTTTTATAATAATTA
*
4619527 ATAATTTTTTTAA-AATTA
1 ATAATTTTTATAATAATTA
4619545 TAAATTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATAATTTTTATAATAATTA
Found at i:4620418 original size:44 final size:44
Alignment explanation
Indices: 4620355--4620444 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
4620345 TCTCAGTGGG
4620355 AGAATTTATTAGTGAGAGTTCTAATTTTCAAAGGTACAAGAGTA
1 AGAATTTATTAGTGAGAGTTCTAATTTTCAAAGGTACAAGAGTA
4620399 AGAATTTATTAGTGAGAGTTCTAATTTTCAAAGGTACAAGAGTA
1 AGAATTTATTAGTGAGAGTTCTAATTTTCAAAGGTACAAGAGTA
4620443 AG
1 AG
4620445 GAAATTGTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (44 bp):
AGAATTTATTAGTGAGAGTTCTAATTTTCAAAGGTACAAGAGTA
Found at i:4621872 original size:28 final size:28
Alignment explanation
Indices: 4621843--4621898 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
4621833 GTTTGGTAAA
*
4621843 TTAATACAAAATAGTACTTAAAT-ATTAAT
1 TTAATA-AAAATA-AACTTAAATAATTAAT
*
4621872 TTAGTAAAAATAAACTTAAATAATTAA
1 TTAATAAAAATAAACTTAAATAATTAA
4621899 ATATCTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 11 0.46
29 5 0.21
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (28 bp):
TTAATAAAAATAAACTTAAATAATTAAT
Found at i:4628464 original size:12 final size:12
Alignment explanation
Indices: 4628432--4628465 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
4628422 TGGGTGATTG
*
4628432 ATTAAAAAATTA
1 ATTATAAAATTA
4628444 ATTACTAAAATTA
1 ATTA-TAAAATTA
4628457 ATTATAAAA
1 ATTATAAAA
4628466 AAATAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
ATTATAAAATTA
Found at i:4629305 original size:16 final size:17
Alignment explanation
Indices: 4629270--4629312 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
4629260 GTAAGAAATT
* *
4629270 ATTAATAACATTATTTAC
1 ATTAATAATA-TATTAAC
4629288 ATT-ATAATATATTAAC
1 ATTAATAATATATTAAC
4629304 ATTAATAAT
1 ATTAATAAT
4629313 GAATTATTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 9 0.41
17 10 0.45
18 3 0.14
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTAATAATATATTAAC
Found at i:4629655 original size:3 final size:3
Alignment explanation
Indices: 4629649--4629682 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
4629639 AATAATATTT
* *
4629649 TAA TAA TAA TAA TAA TAG TAA TAA TAA TGA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
4629683 TGAATTTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:4629978 original size:21 final size:22
Alignment explanation
Indices: 4629947--4629993 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
4629937 GTCATTCAAA
*
4629947 TTAATTTTTTAA-ATTTGTATTT
1 TTAATTTTTTAATATTT-TATAT
4629969 TTAA-TTTTTAATATTTTATAT
1 TTAATTTTTTAATATTTTATAT
4629990 TTAA
1 TTAA
4629994 AAGTTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TTAATTTTTTAATATTTTATAT
Found at i:4630039 original size:20 final size:18
Alignment explanation
Indices: 4630005--4630041 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
4629995 AGTTATAATA
4630005 ATAAAATATAAAATAAAC
1 ATAAAATATAAAATAAAC
4630023 ATAAAATTATGAAAATAAA
1 ATAAAA-TAT-AAAATAAA
4630042 AAAATCCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 3 0.18
20 8 0.47
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (18 bp):
ATAAAATATAAAATAAAC
Found at i:4630065 original size:5 final size:5
Alignment explanation
Indices: 4630055--4630142 Score: 61
Period size: 5 Copynumber: 16.2 Consensus size: 5
4630045 ATCCATTTTT
* *
4630055 ATAAA ATAAA ATAAA ATTAGAA A-AATT AGAAA ATATAA ATATAA ATATAA
1 ATAAA ATAAA ATAAA A-TA-AA ATAA-A ATAAA ATA-AA ATA-AA ATA-AA
* *
4630105 ATATA ATAAA TATAAA ATAAA ATAAA AGTAAA GTAAA A
1 ATAAA ATAAA -ATAAA ATAAA ATAAA A-TAAA ATAAA A
4630143 AGGGGCTGCT
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
4 1 0.01
5 35 0.51
6 30 0.43
7 3 0.04
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (5 bp):
ATAAA
Found at i:4630096 original size:6 final size:6
Alignment explanation
Indices: 4630085--4630130 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
4630075 AAAAATTAGA
4630085 AAATAT AAATAT AAATAT AAATAT --A-AT AAATAT AAA-AT AAA-AT
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
4630128 AAA
1 AAA
4630131 AGTAAAGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
3 2 0.05
4 1 0.03
5 11 0.30
6 23 0.62
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (6 bp):
AAATAT
Found at i:4630115 original size:15 final size:16
Alignment explanation
Indices: 4630055--4630130 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 16
4630045 ATCCATTTTT
4630055 ATAAAATAAA-ATAAA
1 ATAAAATAAATATAAA
* *
4630070 ATTAGAAA-AATTAGAAA
1 A-TA-AAATAAATATAAA
4630087 ATATAAATATAA-ATATAA
1 ATA-AAATA-AATATA-AA
*
4630105 ATATAATAAATATAAA
1 ATAAAATAAATATAAA
4630121 ATAAAATAAA
1 ATAAAATAAA
4630131 AGTAAAGTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 13
0.70 0.10 0.19
Matches are distributed among these distances:
15 1 0.02
16 22 0.47
17 18 0.38
18 6 0.13
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
ATAAAATAAATATAAA
Found at i:4630115 original size:21 final size:19
Alignment explanation
Indices: 4630084--4630129 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 19
4630074 GAAAAATTAG
4630084 AAAAT-ATAAATATAAATAT
1 AAAATAATAAATATAAA-AT
4630103 AAATATAATAAATATAAAAT
1 AAA-ATAATAAATATAAAAT
4630123 AAAATAA
1 AAAATAA
4630130 AAGTAAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.28
20 7 0.28
21 11 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAATAATAAATATAAAAT
Found at i:4630128 original size:27 final size:29
Alignment explanation
Indices: 4630055--4630128 Score: 77
Period size: 28 Copynumber: 2.7 Consensus size: 29
4630045 ATCCATTTTT
4630055 ATAAA-ATAAAATAAAATTAGAAAAATTAG
1 ATAAATATAAAATAAAA-TAGAAAAATTAG
* *
4630084 A-AAATAT-AAATATAAATATAAATA-TA-
1 ATAAATATAAAATA-AAATAGAAAAATTAG
4630110 ATAAATATAAAATAAAATA
1 ATAAATATAAAATAAAATA
4630129 AAAGTAAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
26 1 0.03
27 13 0.33
28 19 0.49
29 6 0.15
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (29 bp):
ATAAATATAAAATAAAATAGAAAAATTAG
Found at i:4630141 original size:11 final size:10
Alignment explanation
Indices: 4630055--4630142 Score: 61
Period size: 11 Copynumber: 8.1 Consensus size: 10
4630045 ATCCATTTTT
4630055 ATAAAATAAA
1 ATAAAATAAA
4630065 ATAAAATTAGAA
1 ATAAAA-TA-AA
* *
4630077 A-AATTAGAAA
1 ATAA-AATAAA
4630087 ATATAAATATAA
1 ATA-AAATA-AA
*
4630099 ATATAAATATA
1 ATA-AAATAAA
4630110 ATAAATATAAA
1 ATAAA-ATAAA
4630121 ATAAAATAAA
1 ATAAAATAAA
*
4630131 AGTAAAGTAAA
1 A-TAAAATAAA
4630142 A
1 A
4630143 AGGGGCTGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
10 17 0.27
11 30 0.48
12 16 0.25
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (10 bp):
ATAAAATAAA
Found at i:4644939 original size:22 final size:22
Alignment explanation
Indices: 4644913--4644964 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
4644903 GTTAGCGAAC
4644913 AAAAATA-TATAAATATAAATAA
1 AAAAATATTATAAATAT-AATAA
*
4644935 AAAAATATTTATAGATATAATAA
1 AAAAATA-TTATAAATATAATAA
4644958 AATAAAT
1 AA-AAAT
4644965 TGAATAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 7 0.27
23 7 0.27
24 12 0.46
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAAATATTATAAATATAATAA
Found at i:4652063 original size:16 final size:16
Alignment explanation
Indices: 4652039--4652071 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4652029 TGGCGCCTCT
*
4652039 TGGGTACTCTAAGAAA
1 TGGGAACTCTAAGAAA
4652055 TGGGAACTCTAAGAAA
1 TGGGAACTCTAAGAAA
4652071 T
1 T
4652072 CATTCAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (16 bp):
TGGGAACTCTAAGAAA
Found at i:4655935 original size:132 final size:132
Alignment explanation
Indices: 4655748--4656500 Score: 1373
Period size: 132 Copynumber: 5.7 Consensus size: 132
4655738 TAAGACTGTA
* * * * ** * **
4655748 ATCTTCGATCTGCTTCTCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTTCAAC
1 ATCTTCGATCTACTTCAC-GCC-AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCC
* *
4655813 ACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACC
64 ACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACC
4655878 TGCT
129 TGCT
4655882 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
4655947 CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
66 CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
4656012 CT
131 CT
4656014 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
4656079 CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
66 CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
4656144 CT
131 CT
4656146 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
4656211 CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
66 CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
4656276 CT
131 CT
4656278 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
*
4656343 CAATATGGGAAAACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
66 CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
4656408 CT
131 CT
4656410 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
4656475 CAATAT-GGAAGACAAGATCTGCATCT
66 CAATATGGGAAGACAAGATCTGCATCT
4656501 GACTTCAATC
Statistics
Matches: 606, Mismatches: 13, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
131 19 0.03
132 568 0.94
133 3 0.00
134 16 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (132 bp):
ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
CT
Found at i:4667620 original size:107 final size:107
Alignment explanation
Indices: 4667351--4667738 Score: 552
Period size: 107 Copynumber: 3.7 Consensus size: 107
4667341 ATGCTATGTC
* * * * * * * * *
4667351 ACGAGAAATTGAGA-CCAGCACATTAGGGCACGTTCTCTCAAATTTCCGAACAC-AAATATTGCC
1 ACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTTTCCAAACGCGAAATATTACC
* * **
4667414 TCACTTCGAAAGTTT-AAAAGGATATTTGGCTATTTGGTCAA
66 TTATTTTAAAAGTTTAAAAAGGATATTTGGCTATTTGGTCAA
* * *
4667455 ACAAGAAGTCGAAACCCA-CACGTTAGGGTACG-TTTCTTCGATTTTCCAAACGCGAAATATTAC
1 ACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTC-TCGATTTTCCAAACGCGAAATATTAC
4667518 CTTATTTTAAAAGTTTAAAAAGGATATTTGGCTATTTGGTCAA
65 CTTATTTTAAAAGTTTAAAAAGGATATTTGGCTATTTGGTCAA
4667561 ACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTTTCCAAACGCGAAATATTACC
1 ACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTTTCCAAACGCGAAATATTACC
* *
4667626 TTATTTTAAAAGTTTAAAAAAGATATTTGGCTATTTGGTCGA
66 TTATTTTAAAAGTTTAAAAAGGATATTTGGCTATTTGGTCAA
* *
4667668 ACGAGAAATCGAAACCCAGCACGTTAGGGTACGTTTTCTCGATTTTCCAAACGCGAAATATTGCC
1 ACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTTTCCAAACGCGAAATATTACC
4667733 TTATTT
66 TTATTT
4667739 AGAAAAACCT
Statistics
Matches: 255, Mismatches: 23, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
103 3 0.01
104 34 0.13
105 23 0.09
106 42 0.16
107 149 0.58
108 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (107 bp):
ACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTTTCCAAACGCGAAATATTACC
TTATTTTAAAAGTTTAAAAAGGATATTTGGCTATTTGGTCAA
Found at i:4681657 original size:22 final size:22
Alignment explanation
Indices: 4681631--4681680 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
4681621 TTATTATTTT
4681631 TTATTTTCACCAAA-AAA-TATTA
1 TTATTTT-ACCAAATAAATTA-TA
*
4681653 TTATTTTATCAAATAAATTATA
1 TTATTTTACCAAATAAATTATA
4681675 TTATTT
1 TTATTT
4681681 AAAAAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 5 0.20
22 18 0.72
23 2 0.08
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (22 bp):
TTATTTTACCAAATAAATTATA
Found at i:4681773 original size:18 final size:19
Alignment explanation
Indices: 4681752--4681791 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
4681742 AAACTAAACC
4681752 TTTAT-TTATATCAAATTT
1 TTTATATTATATCAAATTT
*
4681770 TTTATAATTATATCAAGTTT
1 TTTAT-ATTATATCAAATTT
4681790 TT
1 TT
4681792 ATAGATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
20 14 0.74
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTATATTATATCAAATTT
Found at i:4681801 original size:19 final size:20
Alignment explanation
Indices: 4681757--4681794 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
4681747 AAACCTTTAT
*
4681757 TTATATCAAATTTTTTATAA
1 TTATATCAAAGTTTTTATAA
4681777 TTATATC-AAGTTTTTATA
1 TTATATCAAAGTTTTTATA
4681795 GATATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (20 bp):
TTATATCAAAGTTTTTATAA
Found at i:4681908 original size:3 final size:3
Alignment explanation
Indices: 4681900--4681925 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4681890 TTAACTTCTG
4681900 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
4681926 GATTTAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4682175 original size:28 final size:28
Alignment explanation
Indices: 4682117--4682185 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
4682107 TGCATCCTAG
* * **
4682117 TCATTTAATTATTAATAATTTTAATTTTA
1 TCATTTAATTA-TAAAAATTATAAAATTA
4682146 TCATTTAATTATAAAAATTATAAAATTA
1 TCATTTAATTATAAAAATTATAAAATTA
*
4682174 TCACTTAATTAT
1 TCATTTAATTAT
4682186 TTGATTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 24 0.69
29 11 0.31
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (28 bp):
TCATTTAATTATAAAAATTATAAAATTA
Found at i:4684682 original size:35 final size:35
Alignment explanation
Indices: 4684643--4684713 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
4684633 ACTGGTTCAG
4684643 TTATGAGTAATAAAAAATGGAGTAAATTCAAATGC
1 TTATGAGTAATAAAAAATGGAGTAAATTCAAATGC
4684678 TTATGAGTAATAAAAAATGGAGTAAATTCAAATGC
1 TTATGAGTAATAAAAAATGGAGTAAATTCAAATGC
4684713 T
1 T
4684714 CATCATCATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.30
Consensus pattern (35 bp):
TTATGAGTAATAAAAAATGGAGTAAATTCAAATGC
Found at i:4697156 original size:28 final size:31
Alignment explanation
Indices: 4697092--4697156 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 31
4697082 GTTGGAATTG
*
4697092 GAAATAAGTATAAACATATTGGGTCATTTAT
1 GAAAAAAGTATAAACATATTGGGTCATTTAT
*
4697123 GCAAAAAGTA-AAA-ATATT-GGTCATTTAT
1 GAAAAAAGTATAAACATATTGGGTCATTTAT
*
4697151 TAAAAA
1 GAAAAA
4697157 CAGAAAAGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 14 0.47
29 5 0.17
30 3 0.10
31 8 0.27
ACGTcount: A:0.48, C:0.06, G:0.14, T:0.32
Consensus pattern (31 bp):
GAAAAAAGTATAAACATATTGGGTCATTTAT
Found at i:4698116 original size:17 final size:17
Alignment explanation
Indices: 4698079--4698133 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
4698069 CATTGTTTAT
4698079 TATTAATT-TTATATAAGA
1 TATTAATTATTATA-AA-A
4698097 TATTAATTATTATAAAA
1 TATTAATTATTATAAAA
* *
4698114 TATTATCTTATTAAAAAA
1 TATTA-ATTATTATAAAA
4698132 TA
1 TA
4698134 AATTTTAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.18
18 22 0.67
19 5 0.15
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TATTAATTATTATAAAA
Found at i:4700022 original size:3 final size:3
Alignment explanation
Indices: 4700014--4700038 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4700004 TTGTTTTCAA
4700014 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
4700039 CTTTGCTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:4705293 original size:36 final size:36
Alignment explanation
Indices: 4705246--4705318 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
4705236 TGCTGACTTA
4705246 AAATTTTCTTTTTTTTTTTGTTATGAATATATAATC
1 AAATTTTCTTTTTTTTTTTGTTATGAATATATAATC
4705282 AAATTTTCTTTTTTTTTTTGTTATGAATATATAATC
1 AAATTTTCTTTTTTTTTTTGTTATGAATATATAATC
4705318 A
1 A
4705319 TAAATATTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.60
Consensus pattern (36 bp):
AAATTTTCTTTTTTTTTTTGTTATGAATATATAATC
Found at i:4710758 original size:25 final size:25
Alignment explanation
Indices: 4710721--4710769 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
4710711 TTTCCATAAA
* *
4710721 AAATTTTTAAAAATATAAAAATTAT
1 AAATATTTAAAAAAATAAAAATTAT
*
4710746 AAATATTTCAAAAAATAAAAATTA
1 AAATATTTAAAAAAATAAAAATTA
4710770 AGAAATTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
AAATATTTAAAAAAATAAAAATTAT
Found at i:4710882 original size:9 final size:9
Alignment explanation
Indices: 4710728--4710889 Score: 77
Period size: 9 Copynumber: 17.7 Consensus size: 9
4710718 AAAAAATTTT
4710728 TAAAAA-TA
1 TAAAAATTA
4710736 TAAAAATTA
1 TAAAAATTA
*
4710745 TAAATATT-
1 TAAAAATTA
4710753 TCAAAAA--A
1 T-AAAAATTA
4710761 TAAAAATTA
1 TAAAAATTA
*
4710770 -AGAAATTA
1 TAAAAATTA
*
4710778 -AGAAATATA
1 TAAAAAT-TA
*
4710787 TATAATATTAA
1 TA-AAAATT-A
*
4710798 TAAAACATATT
1 TAAAA-AT-TA
*
4710809 TAAAATTTTA
1 TAAAA-ATTA
**
4710819 TAAAACGTA
1 TAAAAATTA
**
4710828 TAAAAATCG
1 TAAAAATTA
*
4710837 TAAAAATAA
1 TAAAAATTA
4710846 TATAAAA-TA
1 TA-AAAATTA
*
4710855 TTAAAATTGA
1 TAAAAATT-A
4710865 TAAATAATTA
1 TAAA-AATTA
4710875 TAAAAATTA
1 TAAAAATTA
4710884 TAAAAA
1 TAAAAA
4710890 AAATTGTAAG
Statistics
Matches: 118, Mismatches: 21, Indels: 29
0.70 0.12 0.17
Matches are distributed among these distances:
7 5 0.04
8 25 0.21
9 46 0.39
10 23 0.19
11 18 0.15
12 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:4711443 original size:10 final size:10
Alignment explanation
Indices: 4711430--4711492 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 10
4711420 CAATATTTAT
4711430 ATTTTTAATA
1 ATTTTTAATA
*
4711440 A-TTTTATATT
1 ATTTTTA-ATA
4711450 ATTTTTAATA
1 ATTTTTAATA
4711460 A--TTT-ATA
1 ATTTTTAATA
*
4711467 ATTTTT-ATG
1 ATTTTTAATA
4711476 ATTTGTTAATA
1 ATTT-TTAATA
4711487 ATTTTT
1 ATTTTT
4711493 TATGAGAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
7 4 0.09
8 3 0.07
9 14 0.33
10 11 0.26
11 11 0.26
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:4711445 original size:17 final size:17
Alignment explanation
Indices: 4711408--4711473 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 17
4711398 TAATTATATT
*
4711408 TTTTATA-TTTT-ACAA
1 TTTTATATTTTTAATAA
4711423 TATTTATATTTTTAATAA
1 T-TTTATATTTTTAATAA
4711441 TTTTATATTATTTTTAATAA
1 -TTT-TA-TATTTTTAATAA
4711461 -TTTATAATTTTTA
1 TTTTAT-ATTTTTA
4711474 TGATTTGTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
15 1 0.02
16 7 0.16
17 13 0.30
18 7 0.16
19 3 0.07
20 12 0.28
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATATTTTTAATAA
Found at i:4711471 original size:27 final size:27
Alignment explanation
Indices: 4711437--4711490 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
4711427 TATATTTTTA
*
4711437 ATAATTTTATATTATTT-TTAATAATTT
1 ATAATTTT-TATGATTTGTTAATAATTT
4711464 ATAATTTTTATGATTTGTTAATAATTT
1 ATAATTTTTATGATTTGTTAATAATTT
4711491 TTTATGAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (27 bp):
ATAATTTTTATGATTTGTTAATAATTT
Found at i:4719986 original size:24 final size:24
Alignment explanation
Indices: 4719953--4720000 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
4719943 TTAAAATAAT
* *
4719953 TTTTTATTTCTATTTATCAAATGTA
1 TTTTTATTTCAATTTA-AAAATGTA
4719978 TTTTT-TTTCAATTTAAAAATGTA
1 TTTTTATTTCAATTTAAAAATGTA
4720001 AAAATGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 9 0.43
25 5 0.24
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
TTTTTATTTCAATTTAAAAATGTA
Found at i:4722487 original size:21 final size:21
Alignment explanation
Indices: 4722461--4722532 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 21
4722451 TATTTTAAGC
4722461 TTCTGTTTAACCCTTACGGGT
1 TTCTGTTTAACCCTTACGGGT
** *** *
4722482 TTCTG-TTAAGTTCTTATAAGC
1 TTCTGTTTAA-CCCTTACGGGT
* *
4722503 TTCCGTTCAACCCTTACGGGT
1 TTCTGTTTAACCCTTACGGGT
4722524 TTCTGTTTA
1 TTCTGTTTA
4722533 GCCTTCGGAT
Statistics
Matches: 33, Mismatches: 16, Indels: 4
0.62 0.30 0.08
Matches are distributed among these distances:
20 4 0.12
21 26 0.79
22 3 0.09
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (21 bp):
TTCTGTTTAACCCTTACGGGT
Found at i:4728170 original size:17 final size:15
Alignment explanation
Indices: 4728138--4728180 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
4728128 AGTTTTTTTA
4728138 TTATATATTTTAACT
1 TTATATATTTTAACT
4728153 TTATATATATTTATACT
1 TTATATAT-TTTA-ACT
4728170 TT-TATACTTTT
1 TTATATA-TTTT
4728181 CTATAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.32
16 11 0.44
17 6 0.24
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
TTATATATTTTAACT
Found at i:4728211 original size:10 final size:9
Alignment explanation
Indices: 4728169--4728254 Score: 50
Period size: 10 Copynumber: 8.9 Consensus size: 9
4728159 ATATTTATAC
*
4728169 TTTTATACT
1 TTTTATAAT
4728178 TTTCTATAAAT
1 TTT-TAT-AAT
*
4728189 TTTGTCTAAT
1 TTT-TATAAT
4728199 TTTTATAACT
1 TTTTATAA-T
4728209 TTTTGATAA-
1 TTTT-ATAAT
4728218 TTTT-TAAT
1 TTTTATAAT
* *
4728226 TCTTTAAAAA
1 T-TTTATAAT
4728236 TTTTATATAT
1 TTTTATA-AT
4728246 TTTTCATAA
1 TTTT-ATAA
4728255 AAATAATATT
Statistics
Matches: 60, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
7 3 0.05
8 1 0.02
9 19 0.32
10 23 0.38
11 14 0.23
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.59
Consensus pattern (9 bp):
TTTTATAAT
Found at i:4729377 original size:18 final size:20
Alignment explanation
Indices: 4729354--4729392 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
4729344 GAATAAAGTG
4729354 AGGTTT-TGAT-TTAATAGT
1 AGGTTTATGATGTTAATAGT
4729372 AGGTTTAATGATGTTAATAGT
1 AGGTTT-ATGATGTTAATAGT
4729393 TTAGAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
20 4 0.22
21 8 0.44
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
AGGTTTATGATGTTAATAGT
Found at i:4731838 original size:24 final size:24
Alignment explanation
Indices: 4731781--4731827 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
4731771 CCATCCTCAC
4731781 CAACATGGGCGTAGCCAAGGGGGG
1 CAACATGGGCGTAGCCAAGGGGGG
4731805 CAACATGGGCGTAGCCAAGGGGG
1 CAACATGGGCGTAGCCAAGGGGG
4731828 CTGGCATGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.45, T:0.09
Consensus pattern (24 bp):
CAACATGGGCGTAGCCAAGGGGGG
Found at i:4732947 original size:25 final size:26
Alignment explanation
Indices: 4732887--4732935 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4732877 ATTTGTCTTA
*
4732887 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
4732911 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
4732936 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Done.