Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 133 of 344
Found at i:44905046 original size:118 final size:115
Alignment explanation
Indices: 44904813--44905047 Score: 285
Period size: 118 Copynumber: 2.0 Consensus size: 115
44904803 GGATATAACC
* * *
44904813 ACTCGCACAAGGCCATCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTA
1 ACTCGCACAAGGCCATCGGGACTCAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTCA
* * * *
44904878 GCCCGGAATAGTAACTCGCACAATGCCTTCGGGACTTAGCTCGAAATTAGTA
66 GCCCGGAATAATAACTAGCACAATGCCTTCGGGACTTACCCCG--ATTAGTA
* * *
44904930 ACTCGCACAAATGCCTTCGGGACTCAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCAC-AAGGCCATCGGGACTCAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGACT
* *
44904994 CAGCCCGGAATTAATCACTAGCACAAATGTCTTCGGGACTTAACCCCG-TTAGTA
64 CAGCCCGGAA-TAATAACTAGCAC-AATGCCTTCGGGACTT-ACCCCGATTAGTA
44905048 TCCGAATATT
Statistics
Matches: 101, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
117 9 0.09
118 63 0.62
119 10 0.10
120 15 0.15
121 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (115 bp):
ACTCGCACAAGGCCATCGGGACTCAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTCA
GCCCGGAATAATAACTAGCACAATGCCTTCGGGACTTACCCCGATTAGTA
Found at i:44906475 original size:26 final size:27
Alignment explanation
Indices: 44906423--44906476 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
44906413 TGAGAACCTT
* * * *
44906423 TTTTTCTTTTCTTTTTTTTCTTCATCA
1 TTTTCCTTTTCATTATTTTATTCATCA
44906450 TTTTCCTTTTCATTATTTTATT-ATCA
1 TTTTCCTTTTCATTATTTTATTCATCA
44906476 T
1 T
44906477 GCTCCTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTTCCTTTTCATTATTTTATTCATCA
Found at i:44914581 original size:40 final size:40
Alignment explanation
Indices: 44914526--44914661 Score: 213
Period size: 40 Copynumber: 3.4 Consensus size: 40
44914516 GATGATAACT
44914526 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
44914566 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
44914606 GGGCTAAGTCCCAAAGGCAGTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
*
44914646 -GGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
44914662 TACTTGGTTT
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 16 0.18
40 74 0.82
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:44918351 original size:28 final size:28
Alignment explanation
Indices: 44918288--44918413 Score: 218
Period size: 28 Copynumber: 4.5 Consensus size: 28
44918278 ATATTAAGTC
* *
44918288 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
44918315 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
44918343 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
44918371 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
44918399 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
44918414 GTACAATTTA
Statistics
Matches: 96, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 22 0.23
28 74 0.77
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:44926693 original size:28 final size:28
Alignment explanation
Indices: 44926630--44926780 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
44926620 ATATTAAGTC
*
44926630 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
44926657 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
44926685 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
44926713 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
44926741 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
44926770 CGCACACTTAG
1 CGCACACTTAG
44926781 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:44929582 original size:27 final size:27
Alignment explanation
Indices: 44929551--44929755 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
44929541 TAAATTGTAC
44929551 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44929578 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44929604 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44929632 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
44929660 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
44929687 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44929714 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
44929741 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44929756 GACTCGATAT
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
27 135 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:44929746 original size:109 final size:109
Alignment explanation
Indices: 44929551--44929755 Score: 286
Period size: 109 Copynumber: 1.9 Consensus size: 109
44929541 TAAATTGTAC
*
44929551 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
* *
44929616 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
66 TGCGAATTGACCATACAGCACTAAGTGTGCGAGTTTGACTATGT
* ** *
44929660 AGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACTAAGT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
* ** * *
44929724 GTGCGAGTTGATTATATAGCACTGAGTGTGCG
65 GTGCGAATTGACCATACAGCACTAAGTGTGCG
44929756 GACTCGATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 1 0.01
109 82 0.99
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (109 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
TGCGAATTGACCATACAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:44938059 original size:40 final size:40
Alignment explanation
Indices: 44938000--44938177 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
44937990 CGGATGATAA
*
44938000 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
44938040 CTGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
44938080 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
44938120 CCGAGCTAAGTCTCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
44938160 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
44938178 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 15 0.12
40 108 0.88
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:44948271 original size:43 final size:43
Alignment explanation
Indices: 44948224--44948318 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
44948214 TCATAGATAG
*
44948224 GGTCTTACACGAAATCAT-AATACGATCCCAATGTCCCAAACAT
1 GGTCTTACACGAAATC-TCAATACAATCCCAATGTCCCAAACAT
* * * * *
44948267 GGTCTTATATGCAATCTCAATACAATGCTAATGTCCCAAACAT
1 GGTCTTACACGAAATCTCAATACAATCCCAATGTCCCAAACAT
*
44948310 GATCTTACA
1 GGTCTTACA
44948319 TGTAATCACA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 1 0.02
43 42 0.98
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGAAATCTCAATACAATCCCAATGTCCCAAACAT
Found at i:44960715 original size:56 final size:56
Alignment explanation
Indices: 44960629--44960748 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
44960619 ACAAGGGATG
44960629 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
44960685 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
44960741 ATGGGCAA
1 ATGGGCAA
44960749 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:44962109 original size:40 final size:40
Alignment explanation
Indices: 44961878--44962102 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
44961868 TCGAATGATG
* * * * *
44961878 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** * *
44961918 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
44961958 TTCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44961997 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
44962037 TCCGGGTTAAGTCCCGAATGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
44962078 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
44962103 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 32 0.20
40 115 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:44962109 original size:80 final size:78
Alignment explanation
Indices: 44961931--44962125 Score: 223
Period size: 80 Copynumber: 2.5 Consensus size: 78
44961921 GGACTAAGAT
* * * *
44961931 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCTCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
* *
44961996 ATCCGGGTTAAGTT
65 ATCCGGGCTAAGTC
* *
44962010 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAATGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTA
*
44962075 TAA-CCGGGCTATGTC
64 -AATCCGGGCTAAGTC
** *
44962090 CCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAA
44962126 ATTCTGAAGG
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
79 42 0.42
80 56 0.56
81 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
TCCGGGCTAAGTC
Found at i:44967308 original size:119 final size:120
Alignment explanation
Indices: 44967126--44967348 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
44967116 TCCTCGTTCA
*
44967126 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
44967191 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
44967246 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
44967308 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
44967349 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:44967348 original size:40 final size:40
Alignment explanation
Indices: 44967124--44967348 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
44967114 GCTCCTCGTT
* *
44967124 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
44967164 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
44967204 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
44967244 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
44967283 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
44967324 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
44967349 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:44989620 original size:16 final size:15
Alignment explanation
Indices: 44989596--44989626 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
44989586 AACTGTTTTA
44989596 TTACAAATTTCACTC
1 TTACAAATTTCACTC
44989611 TTACATAATTTCACTC
1 TTACA-AATTTCACTC
44989627 ACTCCATTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:44989884 original size:49 final size:49
Alignment explanation
Indices: 44989831--44990006 Score: 190
Period size: 51 Copynumber: 3.5 Consensus size: 49
44989821 CTGGTACGCA
44989831 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACG
* * ** * * * *
44989880 TAGTAGCCTGCACTTAGTACTACACACGTGATTGAAACTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA--CCAACAATCCGGTACACG
* * * ** *
44989931 TAATAGCCTGTACTTAGTACTACACATGCGACCTAACCATTTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCGGTACACG
*
44989981 TAGTATCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
44990007 CGTGACCTAA
Statistics
Matches: 101, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
49 29 0.29
50 33 0.33
51 39 0.39
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACG
Found at i:44989948 original size:51 final size:51
Alignment explanation
Indices: 44989810--44989961 Score: 182
Period size: 49 Copynumber: 3.0 Consensus size: 51
44989800 TATTACCACA
* *
44989810 ATTGAAACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCG
1 ATTGAAACTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCG
** * * * *
44989861 A--CCAACAATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ATTGAAACTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCG
* * * *
44989910 ATTGAAACTATCGGGTACGCATAATAGCCTGTACTTAGTACTACACATGCG
1 ATTGAAACTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCG
44989961 A
1 A
44989962 CCTAACCATT
Statistics
Matches: 81, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
49 41 0.51
51 40 0.49
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (51 bp):
ATTGAAACTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCG
Found at i:44990045 original size:52 final size:51
Alignment explanation
Indices: 44989822--44990058 Score: 212
Period size: 50 Copynumber: 4.7 Consensus size: 51
44989812 TGAAACTATC
* * * * *
44989822 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC--AACAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACCATT
* * * * *
44989871 CGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAACTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AAACCATT
* * * * * *
44989922 GGGTACGCATAATAGCCTGTACTTAGTACTACACATGCGACCT-AACCATT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACCATT
** *
44989972 TGGTACATGTAGTATCCTGCACTTAGTACTACACACGTGACCTAAAACCATT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AAACCATT
*** * *
44990024 TTAAACACATAGTAGCTTGCACATAGTACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
44990059 TGTGTTCTCA
Statistics
Matches: 148, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
49 35 0.24
50 39 0.26
51 39 0.26
52 35 0.24
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (51 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACCATT
Found at i:44993057 original size:15 final size:15
Alignment explanation
Indices: 44993023--44993082 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
44993013 TATAGATAAC
* * *
44993023 AAGAAAACCAGGATT
1 AAGAAATCCAAGATA
*
44993038 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
* *
44993053 GAGAAATCCAAAATA
1 AAGAAATCCAAGATA
44993068 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
44993083 CAATATCATA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:44993058 original size:30 final size:30
Alignment explanation
Indices: 44993024--44993082 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
44993014 ATAGATAACA
** * *
44993024 AGAAAACCAGGATTAAGAAGTCCAAGATAG
1 AGAAAACCAAAATAAAGAAATCCAAGATAG
*
44993054 AGAAATCCAAAATAAAGAAATCCAAGATA
1 AGAAAACCAAAATAAAGAAATCCAAGATA
44993083 CAATATCATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.14
Consensus pattern (30 bp):
AGAAAACCAAAATAAAGAAATCCAAGATAG
Found at i:44997061 original size:56 final size:56
Alignment explanation
Indices: 44996970--44997112 Score: 250
Period size: 56 Copynumber: 2.6 Consensus size: 56
44996960 GATGACATGA
* * *
44996970 TACATGCTAGGTCTGAGAGCTTGTGTAGCCCCATTGAGAGACATGTAATTATGTGG
1 TACACGCTAGGTCTGGGAGCTTATGTAGCCCCATTGAGAGACATGTAATTATGTGG
*
44997026 TACACGCTAGGTCCGGGAGCTTATGTAGCCCCATTGAGAGACATGTAATTATGTGG
1 TACACGCTAGGTCTGGGAGCTTATGTAGCCCCATTGAGAGACATGTAATTATGTGG
44997082 TACACGCTAGGTCTGGGAGCTTATGTAGCCC
1 TACACGCTAGGTCTGGGAGCTTATGTAGCCC
44997113 TGTTAAGAGG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 82 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (56 bp):
TACACGCTAGGTCTGGGAGCTTATGTAGCCCCATTGAGAGACATGTAATTATGTGG
Found at i:44997161 original size:56 final size:54
Alignment explanation
Indices: 44997018--44997182 Score: 177
Period size: 56 Copynumber: 3.0 Consensus size: 54
44997008 AGACATGTAA
* ** * * **
44997018 TTATGTGGTACACGCTAGGTCCGGGAGCTTATGTAGCCCCATTGAGAGACATGTAA
1 TTATGTGATACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTAAGAGGC--GTGG
* *
44997074 TTATGTGGTACACGCTAGGTCTGGGAGCTTATGTAGCCCTGTTAAGAGGCGTGG
1 TTATGTGATACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTAAGAGGCGTGG
* * * *
44997128 TTATGTGATACATGCTAGGTCCGGGTGTTCTTATGTAGCCTTGTTGAGAGGCGTG
1 TTATGTGATACACGCTAGGTCCGGGAG--CTTATGTAGCCCTGTTAAGAGGCGTG
44997183 CTATGTTATG
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
54 25 0.27
56 69 0.73
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (54 bp):
TTATGTGATACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTAAGAGGCGTGG
Found at i:45000547 original size:50 final size:50
Alignment explanation
Indices: 45000434--45000679 Score: 246
Period size: 50 Copynumber: 5.0 Consensus size: 50
45000424 AACCGAAGCT
* * * * *
45000434 ATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
*
45000483 ATC-GGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
45000532 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
** * * * * * * *
45000582 -TACCCGTACGCATAGAAGCTTGCACTTAGTACTATACATGCGACCTAACC
1 AT-CTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * * *
45000632 ATCTGGTACATGTAGTATCCTGCATTTTGTACTACACACGTGATCTAA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
45000680 AACCATTTTA
Statistics
Matches: 155, Mismatches: 38, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
48 36 0.23
49 10 0.06
50 108 0.70
51 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:45000634 original size:100 final size:99
Alignment explanation
Indices: 45000434--45000676 Score: 299
Period size: 100 Copynumber: 2.5 Consensus size: 99
45000424 AACCGAAGCT
* * * * * * * * *
45000434 ATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGCGA-CCAACAATCGGTACACGTAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAACAACCCGTACACATAGA
*
45000498 AGCCTGCACTTAGTACTATACACGTGACCTAACC
66 AGCCTGCACTTAGTACTATACACGCGACCTAACC
* * *
45000532 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTACCCGTACGCATAG
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AAACAACCCGTACACATAG
* *
45000597 AAGCTTGCACTTAGTACTATACATGCGACCTAACC
65 AAGCCTGCACTTAGTACTATACACGCGACCTAACC
* * * *
45000632 ATCTGGTACATGTAGTATCCTGCATTTTGTACTACACACGTGATC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC
45000677 TAAAACCATT
Statistics
Matches: 123, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
98 38 0.31
99 1 0.01
100 84 0.68
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAACAACCCGTACACATAGA
AGCCTGCACTTAGTACTATACACGCGACCTAACC
Found at i:45001521 original size:33 final size:33
Alignment explanation
Indices: 45001451--45001542 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 33
45001441 CATGGCTAGC
* * * *
45001451 CTATGGCATTCTGATGAGAA-ATCATAGTTGGG
1 CTATGGCATCCTGATGATAAGACCATAGCTGGG
* *
45001483 CTATGGTATCCTGATTATAAGACCATAGCTGGG
1 CTATGGCATCCTGATGATAAGACCATAGCTGGG
* * *
45001516 GTATGGCATTCTGCTGATAAGACCATA
1 CTATGGCATCCTGATGATAAGACCATA
45001543 ACCCGGTTAT
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
32 16 0.33
33 32 0.67
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (33 bp):
CTATGGCATCCTGATGATAAGACCATAGCTGGG
Found at i:45005723 original size:33 final size:33
Alignment explanation
Indices: 45005676--45005740 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
45005666 AGTTTTCACA
45005676 TTTAAAGAGATTGAATACAAGCATTT-TGTTATT
1 TTTAAAGAGATTGAATAC-AGCATTTATGTTATT
*
45005709 TTTAAAGAGCTTGAATACAGCATTTATGTTAT
1 TTTAAAGAGATTGAATACAGCATTTATGTTAT
45005741 GGTTTAGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 7 0.23
33 23 0.77
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (33 bp):
TTTAAAGAGATTGAATACAGCATTTATGTTATT
Found at i:45007289 original size:26 final size:24
Alignment explanation
Indices: 45007251--45007335 Score: 73
Period size: 26 Copynumber: 3.4 Consensus size: 24
45007241 TGGCTATCCA
*
45007251 GAGC-TCCTGATTAAAGGCTCTTCGT
1 GAGCTTCCTAATTAAA-GCTCTT-GT
*
45007276 GAGCTTCCTAATTAAAAGTTCTTTGT
1 GAGCTTCCTAATT-AAAGCTC-TTGT
* * * *
45007302 GAACTTTCTAATTATAGCTCTTAT
1 GAGCTTCCTAATTAAAGCTCTTGT
45007326 GAGCTTCCTA
1 GAGCTTCCTA
45007336 TTATATAGCC
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
24 11 0.23
25 9 0.19
26 23 0.48
27 5 0.10
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (24 bp):
GAGCTTCCTAATTAAAGCTCTTGT
Found at i:45011928 original size:39 final size:39
Alignment explanation
Indices: 45011870--45012101 Score: 385
Period size: 39 Copynumber: 6.0 Consensus size: 39
45011860 ATTATATTAT
* * * *
45011870 CAGCACAAAGCATG-GGGACTTTAACCCGGATACATCTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
45011908 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
45011947 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
45011986 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
45012025 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
45012064 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
45012102 TCAGTGTCTT
Statistics
Matches: 182, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
38 12 0.07
39 170 0.93
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:45015762 original size:27 final size:26
Alignment explanation
Indices: 45015718--45015769 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45015708 CTTGCTGTAA
*
45015718 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
45015745 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
45015770 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:45028680 original size:25 final size:24
Alignment explanation
Indices: 45028642--45028711 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
45028632 AGGAAGTGCT
* *
45028642 AAAAGGGCTCTGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
45028666 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
45028691 AGAAAGGGCTTTGCACCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
45028712 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:45028724 original size:24 final size:24
Alignment explanation
Indices: 45028642--45028724 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
45028632 AGGAAGTGCT
* *
45028642 AAAAGGGCTCTGC-CCTAGTTTACC
1 AAAAGGGCTTTGCACC-AGTTTATC
*
45028666 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCACCAGTTTATC
*
45028691 AGAAAGGGCTTTGCACCAG-TTATT
1 A-AAAGGGCTTTGCACCAGTTTATC
45028715 AAAAGAGGCT
1 AAAAG-GGCT
45028725 AGGCCTCTAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 35 0.69
26 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCACCAGTTTATC
Found at i:45028918 original size:42 final size:42
Alignment explanation
Indices: 45028859--45028950 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
45028849 TAGTCTCCCC
*
45028859 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
45028901 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
45028943 AAATGGGC
1 AAATGGGC
45028951 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:45029048 original size:30 final size:30
Alignment explanation
Indices: 45028974--45029086 Score: 165
Period size: 31 Copynumber: 3.7 Consensus size: 30
45028964 TGTTTACAGT
45028974 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
*
45029005 AATGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
* *
45029036 AAAGGC-TCGGCCCAATATATGATTTATGG
1 AAAGGCTTCGGCCCAGTATATGATTTATGA
*
45029065 AAAGGCTTTGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
45029087 TCAAGACTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
29 18 0.24
30 22 0.29
31 35 0.47
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGATTTATGA
Found at i:45031251 original size:93 final size:93
Alignment explanation
Indices: 45031092--45031264 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
45031082 GTAACTCGCC
* * * *
45031092 CGAACTCAGACTCAACTCAACGAGCTGGGGCGTTCGCATCCATAAGTGAACTCGGACTTAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
45031157 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
45031185 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
45031250 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
45031265 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:45031255 original size:46 final size:46
Alignment explanation
Indices: 45031093--45031260 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
45031083 TAACTCGCCC
* * * *
45031093 GAACTCAGACTCAACTCAACGAGCTGGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGT
* * * * *
45031139 GAACTCGGACTTAACTCAACGAGCTCGGATGCCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CATCCATAAGT
*
45031186 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGT
*
45031232 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
45031261 TGCCCAAATA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 58 0.58
47 30 0.30
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGT
Found at i:45031279 original size:46 final size:45
Alignment explanation
Indices: 45031136--45031279 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
45031126 CGCATCCATA
* * * *
45031136 AGTGAACTCGGACTTAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
45031184 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
45031229 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
45031275 AGTGA
1 AGTGA
45031280 CATGTCACTT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.49
47 29 0.38
48 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:45033106 original size:28 final size:28
Alignment explanation
Indices: 45033070--45033144 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
45033060 TCAAATATGG
* *
45033070 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
* *
45033098 CACTTAGTGTGCGAGATGTTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
45033126 CACTTAGTGTGTGAAATAT
1 CACTTAGTGTGCGAAATAT
45033145 CGAATGATTC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:45035436 original size:25 final size:25
Alignment explanation
Indices: 45035402--45035449 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
45035392 GGATAGGATT
45035402 TTGTTAAATGAAATAATAAAAATAA
1 TTGTTAAATGAAATAATAAAAATAA
45035427 TTGTTAAATGAAATAATAAAAAT
1 TTGTTAAATGAAATAATAAAAAT
45035450 TAAGCTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (25 bp):
TTGTTAAATGAAATAATAAAAATAA
Found at i:45035711 original size:27 final size:27
Alignment explanation
Indices: 45035656--45035716 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
45035646 TGTTGACGGT
* *
45035656 GATGCAGCAGAAGGGATAGTCGACGAC
1 GATGCAGCAGAAGGGACAGTCGACAAC
*
45035683 GATGCAGCAGAGGGGACAG-CTGACAAC
1 GATGCAGCAGAAGGGACAGTC-GACAAC
45035710 GATGCAG
1 GATGCAG
45035717 TAGATGGTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.33, C:0.20, G:0.38, T:0.10
Consensus pattern (27 bp):
GATGCAGCAGAAGGGACAGTCGACAAC
Found at i:45035974 original size:41 final size:41
Alignment explanation
Indices: 45035842--45035983 Score: 173
Period size: 40 Copynumber: 3.5 Consensus size: 41
45035832 AAAATGATAC
* * * * *
45035842 TTTGTGGCATTTTTCTCA-CAGCGACACTAATGCTTGACAT
1 TTTGTGGCATTTTTCTCATAAACGCCGCTAATGCTTGACCT
* * * *
45035882 TTGGTAGCGTTTTTCTCAT-AGCGCCGCTAATGCTTG-CCT
1 TTTGTGGCATTTTTCTCATAAACGCCGCTAATGCTTGACCT
45035921 TTTGTGGCATTTTTCTCATAAACGCCGCTAATGCTTGACCT
1 TTTGTGGCATTTTTCTCATAAACGCCGCTAATGCTTGACCT
*
45035962 TTTGCGGCATTTTTCTCATAAA
1 TTTGTGGCATTTTTCTCATAAA
45035984 AGCTGCTACT
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
39 18 0.20
40 46 0.52
41 24 0.27
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.39
Consensus pattern (41 bp):
TTTGTGGCATTTTTCTCATAAACGCCGCTAATGCTTGACCT
Found at i:45036008 original size:41 final size:41
Alignment explanation
Indices: 45035891--45036017 Score: 132
Period size: 41 Copynumber: 3.1 Consensus size: 41
45035881 TTTGGTAGCG
** * * *
45035891 TTTTTCTCAT-AGCGCCGCTAATGCTTG-CCTTTTGTGGCA
1 TTTTTCTCATAAAAGCCGCTAATACTTGACCTATTGCGGCA
* * *
45035930 TTTTTCTCATAAACGCCGCTAATGCTTGACCTTTTGCGGCA
1 TTTTTCTCATAAAAGCCGCTAATACTTGACCTATTGCGGCA
* * * *
45035971 TTTTTCTCATAAAAGCTGCTACTACTTTACCTATTGCGGCG
1 TTTTTCTCATAAAAGCCGCTAATACTTGACCTATTGCGGCA
45036012 TTTTTC
1 TTTTTC
45036018 CGTTAGTGCC
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 10 0.13
40 16 0.21
41 51 0.66
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (41 bp):
TTTTTCTCATAAAAGCCGCTAATACTTGACCTATTGCGGCA
Found at i:45040609 original size:22 final size:22
Alignment explanation
Indices: 45040578--45040621 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
45040568 AATTACTAAC
*
45040578 ATAATGAATTTTAAATAATTTT
1 ATAATAAATTTTAAATAATTTT
* *
45040600 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAAATAATTTT
45040622 TATCATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
ATAATAAATTTTAAATAATTTT
Found at i:45041444 original size:18 final size:19
Alignment explanation
Indices: 45041423--45041458 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45041413 ATTTATGTTG
45041423 ATATGATTT-ATTTAATTA
1 ATATGATTTAATTTAATTA
*
45041441 ATATGGTTTAATTTAATT
1 ATATGATTTAATTTAATT
45041459 TGCGTTAGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
ATATGATTTAATTTAATTA
Found at i:45051602 original size:27 final size:26
Alignment explanation
Indices: 45051554--45051612 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
45051544 GCGAGGCTAC
*
45051554 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
45051581 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
45051607 CAGATA
1 CAGATA
45051613 CATACATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45057030 original size:40 final size:40
Alignment explanation
Indices: 45056953--45057130 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
45056943 AACCCAAGTA
* * *
45056953 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATG
45056992 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
45057032 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
45057072 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
45057112 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45057131 TTATCATCCG
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 15 0.12
40 113 0.88
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:45062279 original size:33 final size:32
Alignment explanation
Indices: 45062228--45062291 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
45062218 ATGAAGTCAC
* *
45062228 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
45062260 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
45062292 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:45065864 original size:26 final size:26
Alignment explanation
Indices: 45065835--45065949 Score: 95
Period size: 26 Copynumber: 4.3 Consensus size: 26
45065825 TAAAATTACC
* *
45065835 AAATTACTAAAATACCCCCAATTGTA
1 AAATTACCAAAATACCCCCGATTGTA
* * *
45065861 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCCC-GATTGTA
* **
45065888 AAATTACCGAAATACCGTCGATTGTA
1 AAATTACCAAAATACCCCCGATTGTA
* * * *
45065914 AAAGTACTAAAATGCCCTCGATTTGTA
1 AAATTACCAAAATACCCCCGA-TTGTA
*
45065941 GAATTACCA
1 AAATTACCA
45065950 TTTTACCCTC
Statistics
Matches: 68, Mismatches: 19, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
26 38 0.56
27 30 0.44
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCCCGATTGTA
Found at i:45065958 original size:27 final size:27
Alignment explanation
Indices: 45065928--45066097 Score: 198
Period size: 27 Copynumber: 6.3 Consensus size: 27
45065918 TACTAAAATG
* *
45065928 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
45065955 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
45065982 TCCTCGACTTAAAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
45066009 CCCTCGATTTATAGAATTATCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
45066036 CCTTCGATTTA-AAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * *
45066062 CCCTCAATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
45066089 CCCTCGATT
1 CCCTCGATT
45066098 GTGAAATTAC
Statistics
Matches: 120, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
26 22 0.18
27 98 0.82
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:45066080 original size:53 final size:52
Alignment explanation
Indices: 45065942--45066097 Score: 213
Period size: 53 Copynumber: 2.9 Consensus size: 52
45065932 CGATTTGTAG
* *
45065942 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCATCCTCGACTTAAAA
1 AATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA-CCTCGA-TTAAAA
* *
45065996 AATTACCATTTTACCCTCGATTTATAGAATTATCATTTTACCTTCGATTTAAA
1 AATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTACC-TCGATTAAAA
* * *
45066049 AATTACCATTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA-CCTCGATT
45066098 GTGAAATTAC
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
53 49 0.53
54 43 0.47
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.40
Consensus pattern (52 bp):
AATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTACCTCGATTAAAA
Found at i:45066105 original size:53 final size:52
Alignment explanation
Indices: 45065928--45066107 Score: 207
Period size: 53 Copynumber: 3.3 Consensus size: 52
45065918 TACTAAAATG
* * *
45065928 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGA-TT-TAAAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA
* * *
45065982 TCCTCGACTTAAAAAATTACCATTTTACCCTCGATTTATAGAATTATCATTTTA
1 CCCTCGA-TT-TAAAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA
* * * *
45066036 CCTTCGATTTAAAAATTACCATTTTACCCTCAATTTACAAAATTATCGTTTTA
1 CCCTCGATTT-AAAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA
*
45066089 CCCTCGATTGTGAAATTAC
1 CCCTCGATT-TAAAATTAC
45066108 TGAAATACCC
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 55 0.51
54 52 0.49
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (52 bp):
CCCTCGATTTAAAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA
Found at i:45066119 original size:27 final size:26
Alignment explanation
Indices: 45066089--45066198 Score: 80
Period size: 27 Copynumber: 4.1 Consensus size: 26
45066079 TATCGTTTTA
**
45066089 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
*
45066116 CCCT-ATCG-GATAGAATTACCAAAATAC
1 CCCTGATTGTG--A-AATTACCAAAATAC
* *
45066143 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* **
45066170 CCCTAATTTGTGAAATTACTGAAATAC
1 CCCTGA-TTGTGAAATTACCAAAATAC
45066197 CC
1 CC
45066199 TTGTAGGGTA
Statistics
Matches: 65, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
24 1 0.02
25 3 0.05
26 1 0.02
27 57 0.88
28 1 0.02
29 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:45066213 original size:27 final size:27
Alignment explanation
Indices: 45066102--45066446 Score: 405
Period size: 27 Copynumber: 12.8 Consensus size: 27
45066092 TCGATTGTGA
* * * *
45066102 AATTACTGAAATACCCCTATCGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
45066129 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* * **
45066156 AATTACCAAAATACCCCT-AATTTGT-G
1 AATTACCGAAATACCCCTGTA-GGGTAG
* *
45066182 AAATTACTGAAATACCCTTGTAGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAG
45066210 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45066237 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45066264 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45066291 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45066318 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45066345 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45066372 AATTACC-AGAATACACCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
45066399 AATTACCGAAATACCCC-ATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
45066425 AATTATC-ACAATACCCCTGTAG
1 AATTACCGA-AATACCCCTGTAG
45066447 TGTGACAGCC
Statistics
Matches: 282, Mismatches: 26, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
25 1 0.00
26 22 0.08
27 255 0.90
28 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:45067770 original size:69 final size:70
Alignment explanation
Indices: 45067638--45067770 Score: 196
Period size: 69 Copynumber: 1.9 Consensus size: 70
45067628 TAGTTTATTA
* * * * * * *
45067638 CTAATTAATTTGTTGCTGTAATGCTGTAAATTATTGGCTGTCCACATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
45067703 CTTAG
66 CTTAG
45067708 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
45067771 GTTATGTGCT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
69 34 0.61
70 22 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:45069310 original size:47 final size:47
Alignment explanation
Indices: 45069233--45069794 Score: 827
Period size: 47 Copynumber: 12.0 Consensus size: 47
45069223 TTAAGATTTT
** *
45069233 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * **
45069280 ATTTGATAAATGTGAGCATGCATATGTGTGATAAGGTTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
45069327 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45069374 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
45069421 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
45069468 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
45069515 ATGTGATGAATGTGAGCATGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
45069562 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
45069609 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45069656 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45069703 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
45069750 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
45069795 TAGTGTAAAA
Statistics
Matches: 458, Mismatches: 57, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 458 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:45069429 original size:25 final size:25
Alignment explanation
Indices: 45069354--45069429 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
45069344 ATGTATATAT
45069354 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
45069379 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
45069401 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
45069426 GTGA
1 GTGA
45069430 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:45069758 original size:25 final size:25
Alignment explanation
Indices: 45069684--45069758 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 25
45069674 TGCATATATA
*
45069684 TGATAAGGCCGAATGGCCAATGTGA
1 TGATAAGGCCGAATGGCCAATGTGG
* * *
45069709 TGA-ATGTG-AGCAT-G-CATATGT-G
1 TGATAAG-GCCGAATGGCCA-ATGTGG
45069731 TGATAAGGCCGAATGGCCAATGTGG
1 TGATAAGGCCGAATGGCCAATGTGG
45069756 TGA
1 TGA
45069759 ATATGAACAT
Statistics
Matches: 36, Mismatches: 7, Indels: 14
0.63 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.24
Consensus pattern (25 bp):
TGATAAGGCCGAATGGCCAATGTGG
Found at i:45070007 original size:37 final size:37
Alignment explanation
Indices: 45069957--45070108 Score: 223
Period size: 37 Copynumber: 4.1 Consensus size: 37
45069947 GGAAATATAT
* * *
45069957 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
45069994 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* **
45070031 CCCGGGTAAGACCCGATGACTACGTGTATAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
45070068 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
45070105 TCCG
1 TCCG
45070109 AGCTAAAGGT
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:45071435 original size:40 final size:40
Alignment explanation
Indices: 45071380--45071731 Score: 480
Period size: 40 Copynumber: 8.8 Consensus size: 40
45071370 AGTTAGATAC
45071380 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
* *
45071420 CCGGGCTAAGTCCTGAAGAGCATTCGAGTTGGTGTTATAT
1 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
* * *
45071460 CCGGGCTAAGT-CTCAAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCT-GAAGAGCATTCGTGCTGGTGTTATAT
* *
45071500 CCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
* * *
45071540 CCGGGCTAAGTCCCGAAGAGCATTCGAGTTGGTGTTATAT
1 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
45071580 CCGGGCTAAGT-CTCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCT-GAAGAGCATTCGTGCTGGTGTTATAT
* * *
45071620 CCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTTATAT
1 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
* * * *
45071660 CCGGGCTAGGTCCCGAAGAGCATTCGAGCTAGTG-T-TAT
1 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
*
45071698 CCGGGCTAAGT-CTCGAAGAGCATTCATGCTGGTG
1 CCGGGCTAAGTCCT-GAAGAGCATTCGTGCTGGTG
45071732 ATGTGTATTC
Statistics
Matches: 280, Mismatches: 27, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
37 1 0.00
38 30 0.11
39 4 0.01
40 243 0.87
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
Found at i:45071745 original size:120 final size:121
Alignment explanation
Indices: 45071380--45071733 Score: 581
Period size: 120 Copynumber: 3.0 Consensus size: 121
45071370 AGTTAGATAC
* *
45071380 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGAGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTC
* *
45071445 GAGTTGGTGTTATATCCGGGCTAAGTCTCAAAGAGCATTCGTGCTAGTGA-TATAT
66 GAGTTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGATTATAT
*
45071500 CCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTC
45071565 GAGTTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTG-TTATAT
66 GAGTTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGATTATAT
* * *
45071620 CCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTC
* * *
45071685 GAGCTAGTG-T-TATCCGGGCTAAGTCTCGAAGAGCATTCATGCTGGTGAT
66 GAGTTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGAT
45071734 GTGTATTCGG
Statistics
Matches: 220, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
118 36 0.16
119 2 0.01
120 182 0.83
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTC
GAGTTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGATTATAT
Found at i:45074157 original size:69 final size:70
Alignment explanation
Indices: 45074025--45074157 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
45074015 TAGTTTATTA
* * * * *
45074025 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
45074090 CTTAG
66 CTTAG
45074095 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
45074158 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:45075696 original size:47 final size:47
Alignment explanation
Indices: 45075619--45076180 Score: 818
Period size: 47 Copynumber: 12.0 Consensus size: 47
45075609 TTAGGATTTT
** *
45075619 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * **
45075666 ATTTGATAAATGTGAGCATGCATATGTGTGATAAGGTTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
45075713 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45075760 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
45075807 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
45075854 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45075901 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
45075948 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
45075995 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
45076042 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
45076089 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
45076136 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
45076181 TAGTGTGAAA
Statistics
Matches: 456, Mismatches: 59, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 456 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:45076393 original size:37 final size:37
Alignment explanation
Indices: 45076343--45076493 Score: 230
Period size: 37 Copynumber: 4.1 Consensus size: 37
45076333 GGAAATATAT
* * *
45076343 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
45076380 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
45076417 CCCGGGTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
45076454 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
45076491 TCC
1 TCC
45076494 AAGCTAAAGG
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:45077395 original size:26 final size:27
Alignment explanation
Indices: 45077301--45077397 Score: 117
Period size: 27 Copynumber: 3.6 Consensus size: 27
45077291 GGGTGTTACA
*
45077301 TGTAGGGTAGAATT-CCTAAAATACCCC
1 TGTAGGGTAGAATTACC-GAAATACCCC
45077328 TGTAGGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* * *
45077355 TGTAGGGTGGAATTACCGAGATA-CCT
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
45077381 TGTGGGGTAAAATTACC
1 TGTAGGGTAGAATTACC
45077398 ATTTTGCCCC
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 16 0.26
27 44 0.71
28 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (27 bp):
TGTAGGGTAGAATTACCGAAATACCCC
Found at i:45077876 original size:22 final size:22
Alignment explanation
Indices: 45077824--45077888 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
45077814 TTAAAGCCTT
* *
45077824 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
45077846 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
45077868 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
45077889 ATGTATTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:45078077 original size:27 final size:27
Alignment explanation
Indices: 45078047--45078148 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
45078037 ATTCTGTTAA
* * *
45078047 GTGGCTTTGCCACATTACCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
45078074 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
45078101 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
45078128 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
45078149 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.79
28 6 0.09
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:45078105 original size:54 final size:53
Alignment explanation
Indices: 45078047--45078148 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
45078037 ATTCTGTTAA
* * * *
45078047 GTGGCTTTGCCACATTACCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATACCTGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* * *
45078101 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATACCTGTATCTGGTGACTATGCCACAATATCTG
45078149 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (53 bp):
GTGGCTCTGCCACAATACCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:45078318 original size:19 final size:19
Alignment explanation
Indices: 45078296--45078352 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
45078286 TTCTGATTTT
45078296 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
45078315 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
45078327 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
45078346 TGATTCT
1 TGATTCT
45078353 AATTCTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 14
0.64 0.04 0.31
Matches are distributed among these distances:
12 8 0.28
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 15 0.52
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:45078323 original size:6 final size:6
Alignment explanation
Indices: 45078285--45078395 Score: 75
Period size: 6 Copynumber: 17.8 Consensus size: 6
45078275 TTGCATTCAC
* * *
45078285 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
45078335 -TTACCTG ATACTG ATTCTA ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
45078385 ATTCTG ATTCT
1 ATTCTG ATTCT
45078396 AGTTCTAATA
Statistics
Matches: 81, Mismatches: 14, Indels: 20
0.70 0.12 0.17
Matches are distributed among these distances:
5 5 0.06
6 60 0.74
7 13 0.16
8 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:45078331 original size:31 final size:31
Alignment explanation
Indices: 45078285--45078395 Score: 159
Period size: 31 Copynumber: 3.5 Consensus size: 31
45078275 TTGCATTCAC
*
45078285 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
45078317 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
45078348 ATTCTAATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
45078379 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
45078396 AGTTCTAATA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
31 66 0.90
32 7 0.10
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:45089437 original size:46 final size:46
Alignment explanation
Indices: 45089381--45089556 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
45089371 TATTTGGGCA
*
45089381 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *** * * * *
45089427 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACGAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ACG
*
45089474 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
45089520 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45089557 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:45089536 original size:93 final size:93
Alignment explanation
Indices: 45089377--45089548 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
45089367 AGGATATTTG
* * *
45089377 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
45089442 TTGAGTCCGAGTTCGAGAGATGTAACGA
66 TTGAGTCCGAGTTCGAGAGATGTAACGA
* *
45089470 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
45089535 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
45089549 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACGA
Found at i:45092900 original size:27 final size:27
Alignment explanation
Indices: 45092844--45092955 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
45092834 AGGAAGCGTC
* *
45092844 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
45092871 CTGGTGGCTCTGCCACATATT-TTTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
45092898 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
45092926 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
45092952 CTGG
1 CTGG
45092956 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.64
28 18 0.25
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:45092952 original size:54 final size:54
Alignment explanation
Indices: 45092844--45092955 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
45092834 AGGAAGCGTC
* * * *
45092844 CTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTGCCACATATTTTTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
45092898 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
45092952 CTGG
1 CTGG
45092956 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:45098040 original size:27 final size:27
Alignment explanation
Indices: 45097999--45098052 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
45097989 TGTCATGTGA
*
45097999 AATTGAATGGAAAATTACTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
45098026 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
45098053 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:45098378 original size:49 final size:49
Alignment explanation
Indices: 45098306--45098480 Score: 235
Period size: 49 Copynumber: 3.5 Consensus size: 49
45098296 TGAGGTCACG
*
45098306 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * * * * * *
45098355 TGTGTAGTACTTAGTGCAGGCTACTATGCGTATTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGGATAA-TT-GGTCGCA
*
45098406 TGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
45098455 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
45098481 TGCGTACCAG
Statistics
Matches: 105, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 62 0.59
50 6 0.06
51 37 0.35
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:45098474 original size:100 final size:100
Alignment explanation
Indices: 45098301--45098486 Score: 345
Period size: 100 Copynumber: 1.9 Consensus size: 100
45098291 TATTGTGAGG
*
45098301 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
45098366 TAGTGCAGGCTACTATGCGTATTCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTATTCGATAACTTCGA
*
45098401 TCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
45098466 AAGTGCAGGCTACTATGCGTA
66 AAGTGCAGGCTACTATGCGTA
45098487 CCAGATGGCC
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTATTCGATAACTTCGA
Found at i:45100338 original size:42 final size:43
Alignment explanation
Indices: 45100258--45100352 Score: 138
Period size: 42 Copynumber: 2.2 Consensus size: 43
45100248 TCCTAGATGT
* * *
45100258 GGTCTTACATGTAATCAAACATCGATGCCATTGTCCCAGACAG
1 GGTCTTACACGAAATCAAACATCGATGCCAATGTCCCAGACAG
* *
45100301 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAACATCGATGCCAATGTCCCAGACAG
45100343 GGTCTTACAC
1 GGTCTTACAC
45100353 ATGTAAAGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 29 0.62
43 18 0.38
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAACATCGATGCCAATGTCCCAGACAG
Found at i:45100383 original size:46 final size:42
Alignment explanation
Indices: 45100278--45100399 Score: 131
Period size: 46 Copynumber: 2.8 Consensus size: 42
45100268 GTAATCAAAC
* * *
45100278 ATCGATGCCATTGTCCCAGACAGGGTCTTACAC-GAAATCAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACAGAAAGCAA
45100319 ATACGATGCCAATGTCCCAGACATGGTCTTACACATGTAAAGCATA
1 AT-CGATGCCAATGTCCCAGACATGGTCTTACACA-G-AAAGCA-A
* *
45100365 AGTCGATGCCAACGTCCCAGACGTGGAT-TTACACA
1 A-TCGATGCCAATGTCCCAGACATGG-TCTTACACA
45100400 ATAACATATA
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
41 2 0.03
42 29 0.42
44 1 0.01
45 5 0.07
46 30 0.43
47 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (42 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACAGAAAGCAA
Found at i:45103202 original size:27 final size:27
Alignment explanation
Indices: 45103172--45103349 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45103162 ATATTGAGTC
* * * *
45103172 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
45103199 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45103226 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
45103254 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
45103281 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
45103308 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45103335 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45103350 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:45103311 original size:82 final size:81
Alignment explanation
Indices: 45103193--45103348 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45103183 TGCTATATAA
* *
45103193 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
45103258 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45103275 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
45103339 CACTTAGTGC
65 CACTTAGTGC
45103349 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45103846 original size:12 final size:12
Alignment explanation
Indices: 45103829--45103854 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
45103819 ATGGCATACT
45103829 TATGTATATATA
1 TATGTATATATA
45103841 TATGTATATATA
1 TATGTATATATA
45103853 TA
1 TA
45103855 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:45105854 original size:40 final size:40
Alignment explanation
Indices: 45105795--45106012 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
45105785 AAACCAAGTA
* * *
45105795 CCTTCGGGATTTAG-TCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
45105834 CCTGCGGGACTTAGCCCGGATATAGTAACTCGCACAAATC
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45105874 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45105914 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
45105954 CCTTCGGGATTTAGCCCGGA-ATCAGTCATTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
45105994 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45106013 TTGCCATCCG
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45114168 original size:40 final size:38
Alignment explanation
Indices: 45114004--45114165 Score: 207
Period size: 40 Copynumber: 4.4 Consensus size: 38
45113994 AACCCAAGTA
* *
45114004 CCTTCGGGATTTAGCCGGATATAG-CACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTCA-TAGCACAAATG
*
45114042 CC-T-GGGACTTAGCC-GATATAGT-ATCGCAC-AATG
1 CCTTCGGGACTTAGCCGGATATAGTCATAGCACAAATG
45114075 -CTTC-GGACTT-GCCGGATATAGTCATAGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTCATAGCACAAATG
45114110 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTCA-TAGCACAAATG
45114150 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
45114166 CGGTTCATCG
Statistics
Matches: 111, Mismatches: 2, Indels: 21
0.83 0.01 0.16
Matches are distributed among these distances:
32 4 0.04
33 19 0.17
34 12 0.11
35 12 0.11
36 14 0.13
37 7 0.06
38 3 0.03
39 15 0.14
40 25 0.23
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (38 bp):
CCTTCGGGACTTAGCCGGATATAGTCATAGCACAAATG
Found at i:45122057 original size:34 final size:34
Alignment explanation
Indices: 45121980--45122075 Score: 86
Period size: 34 Copynumber: 2.8 Consensus size: 34
45121970 CTGATATTGT
* * * * * **
45121980 ACTGAAATGGGCTAAAGCCCACATTGATATTGTT
1 ACTGAATTGGGCTTAGGCCCACACTGTTATTGCA
*
45122014 ACTGTATTGGG-TTGAGGCCCACACTGTTATTGCA
1 ACTGAATTGGGCTT-AGGCCCACACTGTTATTGCA
* *
45122048 ACTGAATTGGGCTTAGGCCGAGACTGTT
1 ACTGAATTGGGCTTAGGCCCACACTGTT
45122076 CAATACTATA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
33 1 0.02
34 46 0.94
35 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (34 bp):
ACTGAATTGGGCTTAGGCCCACACTGTTATTGCA
Found at i:45126956 original size:69 final size:69
Alignment explanation
Indices: 45126845--45126980 Score: 263
Period size: 69 Copynumber: 2.0 Consensus size: 69
45126835 AGTTGGGAGG
45126845 ATTACTTGTCATTGGCAGAATTTGCGTACAATAATAGCTACCAGTCCAGCATACAGATGGCACCT
1 ATTACTTGTCATTGGCAGAATTTGCGTACAATAATAGCTACCAGTCCAGCATACAGATGGCACCT
45126910 TAAA
66 TAAA
*
45126914 ATTACTTGTCGTTGGCAGAATTTGCGTACAATAATAGCTACCAGTCCAGCATACAGATGGCACCT
1 ATTACTTGTCATTGGCAGAATTTGCGTACAATAATAGCTACCAGTCCAGCATACAGATGGCACCT
45126979 TA
66 TA
45126981 CGAGGCATTG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (69 bp):
ATTACTTGTCATTGGCAGAATTTGCGTACAATAATAGCTACCAGTCCAGCATACAGATGGCACCT
TAAA
Found at i:45129844 original size:40 final size:40
Alignment explanation
Indices: 45129738--45129881 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
45129728 TACCACTCGA
* * * * **
45129738 AGCCTGCGGGACTTT-TGCCAGGACATATTTCCAGCACGT
1 AGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCATAT
* * *
45129777 AGCCTGC-GGACCTTAAGTCCGGGTATAATTCCAGCATAT
1 AGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCATAT
*
45129816 AGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATAT
1 AGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCATAT
*
45129856 AGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCCTGCGGGACTTTAAGCCCGGATA
45129882 CACATCAAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
38 6 0.07
39 30 0.33
40 54 0.60
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCATAT
Found at i:45132250 original size:1 final size:1
Alignment explanation
Indices: 45132244--45132277 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
45132234 AATCAACCCC
45132244 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
45132278 TTTTACTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:45149065 original size:29 final size:30
Alignment explanation
Indices: 45148994--45149102 Score: 75
Period size: 29 Copynumber: 3.8 Consensus size: 30
45148984 ACCCCTACAT
* * *
45148994 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATAGCCCATTTAGGCCCAATTC
** * * *
45149022 TTATTCAAATGGCCCATTTA-GCCCAGTTC
1 ACATTCATATAGCCCATTTAGGCCCAATTC
* * *
45149051 ATATTCCTATAGCCCA-CTAGGCCCAATTC
1 ACATTCATATAGCCCATTTAGGCCCAATTC
*
45149080 ACATTCATATGGCCCA-TTAGGCC
1 ACATTCATATAGCCCATTTAGGCC
45149103 TAAATCATAT
Statistics
Matches: 62, Mismatches: 16, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
28 19 0.31
29 43 0.69
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (30 bp):
ACATTCATATAGCCCATTTAGGCCCAATTC
Found at i:45149111 original size:58 final size:57
Alignment explanation
Indices: 45149005--45149113 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 57
45148995 CATGCATATG
** **
45149005 GCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTAGCCCAGTTCATATTCCTATA
1 GCCCACTAGGCCCAATCACATTCAAATGGCCCATTTAGCCCAAATCATATTCCTATA
* *
45149062 GCCCACTAGGCCCAATTCACATTCATATGGCCCA-TTAGGCCTAAATCATATT
1 GCCCACTAGGCCCAA-TCACATTCAAATGGCCCATTTA-GCCCAAATCATATT
45149114 ATATTCATGC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
57 18 0.41
58 26 0.59
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCACATTCAAATGGCCCATTTAGCCCAAATCATATTCCTATA
Found at i:45149219 original size:19 final size:19
Alignment explanation
Indices: 45149186--45149232 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
45149176 TAGGCCCAAC
*
45149186 AGCCCA-TCAGGCCCATTT
1 AGCCCATTCTGGCCCATTT
45149204 AGCCCATTCTGGCCCATTT
1 AGCCCATTCTGGCCCATTT
* *
45149223 GGCCAATTCT
1 AGCCCATTCT
45149233 CAACCCAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (19 bp):
AGCCCATTCTGGCCCATTT
Found at i:45152160 original size:18 final size:18
Alignment explanation
Indices: 45152134--45152169 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45152124 TAAATCGTAA
*
45152134 TTTCACTACAGTTTTCAG
1 TTTCACTACAATTTTCAG
*
45152152 TTTCTCTACAATTTTCAG
1 TTTCACTACAATTTTCAG
45152170 AATACACTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.47
Consensus pattern (18 bp):
TTTCACTACAATTTTCAG
Found at i:45156131 original size:72 final size:72
Alignment explanation
Indices: 45155951--45156157 Score: 211
Period size: 71 Copynumber: 2.9 Consensus size: 72
45155941 AGTAAATTCG
* * *
45155951 TTTATTTAATTATGTGTTTTTAAAAAGTTTAATTTAGTTCAATTTATTAAATTTTGATATTAAGC
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAATTTTGATATTAAGC
* * *
45156016 GAAACCG
66 AAAAACA
* * ** * ** *
45156023 TTTATTTAGTTAT-ACATTTTCAAAAGCTTAATTTAGTTTGATTTATTGAAATTTT-ATCTTAAG
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATT-AAATTTTGATATTAAG
*
45156086 TAAAAACA
65 CAAAAACA
* * * * *
45156094 TTTGTTCAATTATGAGTTTTTAAAAAGGTTAATTTAGTTCAACTTATTGAGTTTTGATATTAAG
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAATTTTGATATTAAG
45156158 TGGAACCATT
Statistics
Matches: 106, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
71 53 0.50
72 53 0.50
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.48
Consensus pattern (72 bp):
TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTAAATTTTGATATTAAGC
AAAAACA
Found at i:45156168 original size:72 final size:72
Alignment explanation
Indices: 45155951--45156172 Score: 232
Period size: 72 Copynumber: 3.1 Consensus size: 72
45155941 AGTAAATTCG
* * * * *
45155951 TTTATTTAATTATGTGTTTTTAAAAAGTTTAATTTAGTTCAATTTATTAAATTTTGATATTAAGC
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGT
*
45156016 GAAACCG
66 GAAACCA
* * ** * ** *
45156023 TTTATTTAGTTAT-ACATTTTCAAAAGCTTAATTTAGTTTGATTTATTGAAATTTT-ATCTTAAG
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTG-AATTTTGATATTAAG
* *
45156086 TAAAAACA
65 TGAAACCA
* * * *
45156094 TTTGTTCAATTATGAGTTTTTAAAAAGGTTAATTTAGTTCAACTTATTGAGTTTTGATATTAAGT
1 TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGT
*
45156159 GGAACCA
66 GAAACCA
45156166 TTTATTC
1 TTTATTC
45156173 TGTTATACAA
Statistics
Matches: 117, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
71 53 0.45
72 64 0.55
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.48
Consensus pattern (72 bp):
TTTATTCAATTATGAGTTTTTAAAAAGCTTAATTTAGTTCAATTTATTGAATTTTGATATTAAGT
GAAACCA
Found at i:45157077 original size:14 final size:14
Alignment explanation
Indices: 45157062--45157095 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
45157052 AAGAGTATAA
45157062 TTAAAGGGTTAAAAT
1 TTAAA-GGTTAAAAT
45157077 TTAAA-GTTAAAAT
1 TTAAAGGTTAAAAT
45157090 TTAAAG
1 TTAAAG
45157096 ATGATAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 13 0.72
15 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (14 bp):
TTAAAGGTTAAAAT
Found at i:45157085 original size:13 final size:13
Alignment explanation
Indices: 45157069--45157095 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45157059 TAATTAAAGG
45157069 GTTAAAATTTAAA
1 GTTAAAATTTAAA
45157082 GTTAAAATTTAAA
1 GTTAAAATTTAAA
45157095 G
1 G
45157096 ATGATAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:45157162 original size:9 final size:9
Alignment explanation
Indices: 45157146--45157275 Score: 97
Period size: 9 Copynumber: 14.7 Consensus size: 9
45157136 AAAACTTTGG
45157146 ACATAACTT
1 ACATAACTT
*
45157155 AAATAACTT
1 ACATAACTT
45157164 ACATAACTT
1 ACATAACTT
45157173 ACATAA--T
1 ACATAACTT
*
45157180 ACATAA-AT
1 ACATAACTT
* * *
45157188 ATATATCAT
1 ACATAACTT
*
45157197 ATCATAAATT
1 A-CATAACTT
45157207 ACATAACTT
1 ACATAACTT
45157216 ACATAACTT
1 ACATAACTT
*
45157225 ACATTACTT
1 ACATAACTT
*
45157234 ACATAA-AT
1 ACATAACTT
* * *
45157242 ATATATCAT
1 ACATAACTT
45157251 ATCATAACTT
1 A-CATAACTT
*
45157261 ACAGAACTT
1 ACATAACTT
*
45157270 AAATAA
1 ACATAA
45157276 ACTTTGGATC
Statistics
Matches: 96, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
7 7 0.07
8 10 0.10
9 68 0.71
10 11 0.11
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.34
Consensus pattern (9 bp):
ACATAACTT
Found at i:45157263 original size:54 final size:52
Alignment explanation
Indices: 45157147--45157275 Score: 195
Period size: 54 Copynumber: 2.4 Consensus size: 52
45157137 AAACTTTGGA
*
45157147 CATAACTTAAATAACTTACATAACTTACATAATACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCATAT
* *
45157199 CATAAATTACATAACTTACATAACTTACATTACTTACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAACTTACA-TA-ATACATAAATATATATCATAT
* *
45157253 CATAACTTACAGAACTTAAATAA
1 CATAACTTACATAACTTACATAA
45157276 ACTTTGGATC
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
52 27 0.39
53 2 0.03
54 40 0.58
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.34
Consensus pattern (52 bp):
CATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCATAT
Found at i:45162319 original size:81 final size:81
Alignment explanation
Indices: 45162233--45162432 Score: 283
Period size: 81 Copynumber: 2.5 Consensus size: 81
45162223 ATTACTGAAA
* * * **
45162233 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATTGTTTCACCCTCAATT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATT
*
45162298 TACAAAATTACCGTTT
66 TACAAAATTACCATTT
* *
45162314 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATT
45162379 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* * * * *
45162395 TACCCCCACTTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATT
45162433 GTGAAATTAC
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATT
TACAAAATTACCATTT
Found at i:45162395 original size:27 final size:27
Alignment explanation
Indices: 45162233--45162432 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
45162223 ATTACTGAAA
** *
45162233 TACCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
45162260 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
45162287 CACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
45162314 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
45162341 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
45162368 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
45162395 TACCC-CCACTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
45162422 TACCCTCGATT
1 TACCCTCGATT
45162433 GTGAAATTAC
Statistics
Matches: 149, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 145 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:45162466 original size:27 final size:27
Alignment explanation
Indices: 45162431--45162613 Score: 196
Period size: 27 Copynumber: 6.8 Consensus size: 27
45162421 TTACCCTCGA
*
45162431 TTGTGAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACTAAAATACCCCTAGT
45162458 TTGTAAAATTA-TCAAAATA-CCCTAGT
1 TTGTAAAATTACT-AAAATACCCCTAGT
*
45162484 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACTAAAATACCCCTAGT
* *
45162511 TTGTAAAATTACTAAAATACCACTGGT
1 TTGTAAAATTACTAAAATACCCCTAGT
* ** *
45162538 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACTAAAATACCCCT-AGT
*
45162565 TTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACTAAAATACCCCTAG-T
**
45162592 TTACAAAATTA-TAGAAATACCC
1 TTGTAAAATTACTA-AAATACCC
45162614 TTGACTTTCT
Statistics
Matches: 132, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 29 0.22
27 99 0.75
28 4 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACTAAAATACCCCTAGT
Found at i:45162466 original size:53 final size:53
Alignment explanation
Indices: 45162422--45162586 Score: 206
Period size: 53 Copynumber: 3.1 Consensus size: 53
45162412 ATTACCGTTT
* * * *
45162422 TACCCTCGATTGTGAAATTACTAAAATACCCCTAGTTTGTAAAATTATCAAAA
1 TACCCTAGATTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* *
45162475 TACCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 TACCCTAGATTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* * * * *
45162528 TACCACTGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTAGATTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAA
45162582 TACCC
1 TACCC
45162587 CTGATTTACA
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
53 56 0.57
54 43 0.43
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (53 bp):
TACCCTAGATTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
Found at i:45162664 original size:27 final size:27
Alignment explanation
Indices: 45162579--45162676 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
45162569 AAAATTACCA
* *
45162579 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGGTTTACAAAATTATAG
*
45162606 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTG-GTTTAC--AAAATTATAG
*
45162635 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGGTTTACAAAATTA-TAG
45162662 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
45162677 GTAGATTTAC
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
27 33 0.54
28 7 0.11
29 21 0.34
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTATAG
Found at i:45164473 original size:68 final size:64
Alignment explanation
Indices: 45164354--45164615 Score: 230
Period size: 68 Copynumber: 4.0 Consensus size: 64
45164344 GATTGGATGA
** * * *
45164354 TACA-GATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGT-GTACAAGAGAG
1 TACAGGATA-TATGTAGCTAGGTCACATGGGTGGTACTATGTGCACACCATGTAG-ACAAGAGAG
45164417 C
64 C
* *
45164418 TACAAGGCATTATGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAG
1 TAC-AGG-A-TAT-ATGTAGCTAGGTCACATGGGTGGTACTATGTGCACACCATGTAGACAAGAG
45164483 AGC
62 AGC
* * * * *
45164486 TACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGCACACCATGTAGACAAGAGA
1 TACAGGATATATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGCACACCATGTAGACAAGAGA
45164551 GC
63 GC
* * **
45164553 TAC-GAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGA
1 TACAG-GATATATGTAGCTAGGTCACATGGGTGGTACT-ATGTGCACACCATGTAG-ACAAGAGA
45164614 GC
63 GC
45164616 CAAACTATAT
Statistics
Matches: 163, Mismatches: 23, Indels: 25
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 27 0.17
65 4 0.02
66 24 0.15
67 37 0.23
68 50 0.31
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
TACAGGATATATGTAGCTAGGTCACATGGGTGGTACTATGTGCACACCATGTAGACAAGAGAGC
Found at i:45167424 original size:42 final size:42
Alignment explanation
Indices: 45167365--45167499 Score: 261
Period size: 42 Copynumber: 3.2 Consensus size: 42
45167355 TAGTCTCCCC
45167365 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
45167407 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
45167449 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
45167491 AAATGGGCT
1 AAATGGGCT
45167500 AAGGGCCATA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 92 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:45167556 original size:31 final size:31
Alignment explanation
Indices: 45167521--45167635 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
45167511 CATTTACAGT
45167521 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
45167552 AAAGGCTTCGGCCTAGTGATATGATTTATAA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
45167583 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
45167614 AAAGGGTTCGGCCCTGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
45167636 TCAAGATGAA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.06
31 72 0.94
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:45170375 original size:24 final size:24
Alignment explanation
Indices: 45170329--45170393 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
45170319 ATGAGAGGTT
* *** *
45170329 GGAGTGATTTATGGAGTGTATCAT
1 GGAGAGATTTATGGAGAAAATCAA
45170353 GGAGAGATATTA-GGAGAAAATCAA
1 GGAGAGAT-TTATGGAGAAAATCAA
*
45170377 GGAGTGATTTATGGAGA
1 GGAGAGATTTATGGAGA
45170394 GATTTAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 3 0.09
24 27 0.82
25 3 0.09
ACGTcount: A:0.35, C:0.03, G:0.34, T:0.28
Consensus pattern (24 bp):
GGAGAGATTTATGGAGAAAATCAA
Found at i:45170381 original size:36 final size:37
Alignment explanation
Indices: 45170341--45170410 Score: 92
Period size: 36 Copynumber: 1.9 Consensus size: 37
45170331 AGTGATTTAT
45170341 GGAGTG-TATCATGGAGAGATATT-AGGA-GAAAATCAA
1 GGAGTGAT-TCATGGAGAGAT-TTAAGGAGGAAAATCAA
*
45170377 GGAGTGATTTATGGAGAGATTTAAGGAGGAAAAT
1 GGAGTGATTCATGGAGAGATTTAAGGAGGAAAAT
45170411 ATAGGATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
35 2 0.07
36 21 0.70
37 7 0.23
ACGTcount: A:0.40, C:0.03, G:0.33, T:0.24
Consensus pattern (37 bp):
GGAGTGATTCATGGAGAGATTTAAGGAGGAAAATCAA
Found at i:45176594 original size:60 final size:59
Alignment explanation
Indices: 45176514--45176654 Score: 171
Period size: 60 Copynumber: 2.4 Consensus size: 59
45176504 TTTAGTGTTA
*
45176514 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCT-TAC-AGTAAC-AGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAG-CCCTATACAAGT--CGAGA-TAT
* *
45176575 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATACAAGTCGAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
* *
45176634 ATTGGGCCTTGCCCATATCAA
1 ACTGGGCCTAGCCCATATCAA
45176655 CACAGTTGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
59 26 0.37
60 34 0.48
61 11 0.15
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
Found at i:45179732 original size:27 final size:26
Alignment explanation
Indices: 45179699--45179767 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 26
45179689 GCCAAACTAT
*
45179699 TTAAATTACCGAAATACCCCTAATTTG
1 TTAAATTACCGAAATACCCC-AACTTG
* *
45179726 TTAAATTACCAAAATACCCCCACTTG
1 TTAAATTACCGAAATACCCCAACTTG
*
45179752 TAAAATTACCGAAATA
1 TTAAATTACCGAAATA
45179768 ACCTTGTAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 18 0.49
27 19 0.51
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (26 bp):
TTAAATTACCGAAATACCCCAACTTG
Found at i:45179759 original size:26 final size:27
Alignment explanation
Indices: 45179701--45179767 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 27
45179691 CAAACTATTT
* *
45179701 AAATTACCGAAATACCCCTAATTTGTT
1 AAATTACCGAAATACCCCTAACTTGTA
* *
45179728 AAATTACCAAAATACCCC-CACTTGTA
1 AAATTACCGAAATACCCCTAACTTGTA
45179754 AAATTACCGAAATA
1 AAATTACCGAAATA
45179768 ACCTTGTAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 18 0.51
27 17 0.49
ACGTcount: A:0.43, C:0.24, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTAACTTGTA
Found at i:45179799 original size:27 final size:27
Alignment explanation
Indices: 45179750--45179811 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
45179740 TACCCCCACT
* *
45179750 TGTAAAATTACCGAAATAACCTTGTAG
1 TGTAAAATTACCGAAAGAACCTTATAG
* *
45179777 TGTAAAATTACCGAACGACCCTTATAG
1 TGTAAAATTACCGAAAGAACCTTATAG
*
45179804 GGTAAAAT
1 TGTAAAAT
45179812 GACTATTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
TGTAAAATTACCGAAAGAACCTTATAG
Found at i:45181748 original size:27 final size:26
Alignment explanation
Indices: 45181706--45181778 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 26
45181696 GGCCAAACTG
* *
45181706 TTTAAATTATCGAAATACCCCTAATT
1 TTTAAATTACCGAAATACCCCCAATT
* *
45181732 TGTTAAATTACCAAAATACCCCCACTT
1 T-TTAAATTACCGAAATACCCCCAATT
*
45181759 TTAAAATTACCGAAATACCC
1 TTTAAATTACCGAAATACCC
45181779 TTGTAGTGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.40, C:0.25, G:0.04, T:0.32
Consensus pattern (26 bp):
TTTAAATTACCGAAATACCCCCAATT
Found at i:45181795 original size:27 final size:27
Alignment explanation
Indices: 45181760--45181819 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 27
45181750 CCCCCACTTT
*
45181760 TAAAATTACCGAAA-TACCCTTGTAGTG-
1 TAAAATTACC-AAACTACCCCTGTAG-GA
45181787 TAAAATTACCAAACTACCCCTGTAGGA
1 TAAAATTACCAAACTACCCCTGTAGGA
45181814 TAAAAT
1 TAAAAT
45181820 GACTGTTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.27
Consensus pattern (27 bp):
TAAAATTACCAAACTACCCCTGTAGGA
Found at i:45182310 original size:27 final size:27
Alignment explanation
Indices: 45182260--45182321 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
45182250 CTATGTGCCT
* *
45182260 ATCATATTTATCGATGACTCTGTGTCG
1 ATCATATTTACCCATGACTCTGTGTCG
* * *
45182287 ATCATATTTACCCATGTCTGTGTGTTG
1 ATCATATTTACCCATGACTCTGTGTCG
*
45182314 ATTATATT
1 ATCATATT
45182322 ACCATCGCTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (27 bp):
ATCATATTTACCCATGACTCTGTGTCG
Found at i:45185565 original size:27 final size:27
Alignment explanation
Indices: 45185535--45185607 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
45185525 AAAATTGTTT
* *
45185535 AAATTACCAAAATACCCTTAATTTGTG
1 AAATTACCAAAATACCCTTAACTTGTA
**
45185562 AAATTA-CAGAAATAGCCC-GCACTTGTA
1 AAATTACCA-AAATA-CCCTTAACTTGTA
*
45185589 AAATTACCGAAATACCCTT
1 AAATTACCAAAATACCCTT
45185608 GTAGTGTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
26 5 0.14
27 27 0.75
28 4 0.11
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTAACTTGTA
Found at i:45185615 original size:27 final size:27
Alignment explanation
Indices: 45185585--45185638 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
45185575 AGCCCGCACT
*
45185585 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCCTGTAG
*
45185612 TGTAAAATTACCGAACTACCCCTGTAG
1 TGTAAAATTACCGAAATACCCCTGTAG
45185639 GGCAAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCCTGTAG
Found at i:45185645 original size:27 final size:27
Alignment explanation
Indices: 45185588--45185646 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
45185578 CCGCACTTGT
* * *
45185588 AAAATTACCGAAATACCCTTGTAGTGT
1 AAAATTACCGAAATACCCCTGTAGGGC
*
45185615 AAAATTACCGAACTACCCCTGTAGGGC
1 AAAATTACCGAAATACCCCTGTAGGGC
45185642 AAAAT
1 AAAAT
45185647 GATTATTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGC
Found at i:45187029 original size:46 final size:46
Alignment explanation
Indices: 45186961--45187184 Score: 290
Period size: 46 Copynumber: 4.8 Consensus size: 46
45186951 TGTAACCCGC
* * *
45186961 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* * * * *
45187007 CCATAAGTGAACTCGAAATCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* * *
45187053 ACATTTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
45187100 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
45187146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
45187185 CCCAAATATC
Statistics
Matches: 153, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
45 2 0.01
46 115 0.75
47 34 0.22
48 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:45187076 original size:93 final size:93
Alignment explanation
Indices: 45186969--45187138 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
45186959 GCCCATAAGC
**
45186969 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGAAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGAAATCAACTCAA
45187034 CGAGTTCGGATGCCTAGTTACATTTCAT
66 CGAGTTCGGATGCCTAGTTACATTTCAT
* * *
45187062 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGAAATCAACTCAA
*
45187127 CGAGTTTGGATG
66 CGAGTTCGGATG
45187139 TTCGCATCCA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGAAATCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAT
Found at i:45190354 original size:27 final size:27
Alignment explanation
Indices: 45190320--45190378 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
45190310 CCCGTACTTG
*
45190320 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
45190347 AAAATTACCGAACTACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
45190374 AAAAT
1 AAAAT
45190379 GATTGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Done.