Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 134 of 344
Found at i:45190916 original size:39 final size:39
Alignment explanation
Indices: 45190862--45190940 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
45190852 TTTACCCATG
45190862 GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
1 GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
45190901 GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
1 GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
45190940 G
1 G
45190941 TCGAACTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTGTGTGTCAATTATATTACCATCACTGATGGCTATGT
Found at i:45192155 original size:40 final size:41
Alignment explanation
Indices: 45192125--45192309 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
45192115 GCTACTCGTT
*
45192125 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* * * *
45192165 CAATTGCCTTTGGGACTTAACTCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* *
45192205 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* * * *
45192244 CAAATGCCTTC-GGATCTTAGTCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAAC-TCGCA
45192285 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45192310 CATCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
Found at i:45192236 original size:79 final size:82
Alignment explanation
Indices: 45192125--45192309 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 82
45192115 GCTACTCGTT
* * * *
45192125 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTTGGGA-CTTAACT-
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCC-TTCGGATCTT-ACTC
* *
45192187 CGGATTTAGTAAC-TCGCA
64 CGGATATAGTAACTTAGCA
* *
45192205 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTACTCCG
* *
45192268 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
45192285 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45192310 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 7 0.08
79 49 0.54
80 34 0.38
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTACTCCG
GATATAGTAACTTAGCA
Found at i:45201450 original size:39 final size:40
Alignment explanation
Indices: 45201333--45201516 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
45201323 GCTACTCGTT
*
45201333 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
45201373 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
45201413 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *** *
45201452 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCGGTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
45201493 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
45201517 GCATCATTCA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.61
41 13 0.11
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:45206943 original size:21 final size:21
Alignment explanation
Indices: 45206918--45206969 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
45206908 GTAAGTTATT
45206918 GATATGATATGTTGCCAAATG
1 GATATGATATGTTGCCAAATG
45206939 GATATGATATGTTGCCAAATG
1 GATATGATATGTTGCCAAATG
45206960 GATATGATAT
1 GATATGATAT
45206970 TATGAAGTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.35
Consensus pattern (21 bp):
GATATGATATGTTGCCAAATG
Found at i:45207695 original size:47 final size:47
Alignment explanation
Indices: 45207628--45208112 Score: 724
Period size: 47 Copynumber: 10.4 Consensus size: 47
45207618 TAAGTGAATA
* *
45207628 AATGTGAA-AGTGTATATGTGTGATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
45207675 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
45207722 AAAGTGAACACGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
45207769 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
** * *
45207816 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
45207863 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
45207910 AAAGTGAACACGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
45207957 AAAGTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
45208004 AAAGTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
45208051 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
45208098 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
45208113 AAATGTGATA
Statistics
Matches: 402, Mismatches: 35, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 394 0.98
48 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:45208299 original size:37 final size:37
Alignment explanation
Indices: 45208243--45208322 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
45208233 CCGGGCTATA
* * *
45208243 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
45208280 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
45208317 AAGACT
1 AAGACT
45208323 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:45212177 original size:29 final size:28
Alignment explanation
Indices: 45212106--45212257 Score: 123
Period size: 29 Copynumber: 5.4 Consensus size: 28
45212096 ACCCCTCCAT
*
45212106 ACATGCATATGGCCCA-CTAGGCCCAATC
1 ACATTCATATGGCCCATC-AGGCCCAATC
* *
45212134 TCA-TCTATATGGCCCATCCGGCCCAATTC
1 ACATTC-ATATGGCCCATCAGGCCCAA-TC
*
45212163 ACATTCATATGGCCCATAAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAA-TC
* * * **
45212192 ACATTCGTATGGCGCATTAGGATCAATC
1 ACATTCATATGGCCCATCAGGCCCAATC
* *
45212220 TCATTTATATGGCCCATCCA-GCCCAAATC
1 ACATTCATATGGCCCAT-CAGGCCC-AATC
45212249 ACATT-ATAT
1 ACATTCATAT
45212258 CCATGCTTAC
Statistics
Matches: 99, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
27 1 0.01
28 40 0.40
29 56 0.57
30 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCATCAGGCCCAATC
Found at i:45219914 original size:28 final size:28
Alignment explanation
Indices: 45219857--45219916 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
45219847 ACATACATGC
*
45219857 ATATGGCCCACTAGGCCCAATCTCATTT
1 ATATGGCCCACTAGGCCCAATATCATTT
45219885 ATATGGCCCATCT-GGCCCAA-ATCATATT
1 ATATGGCCCA-CTAGGCCCAATATCAT-TT
45219913 ATAT
1 ATAT
45219917 CCATGCTCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 4 0.14
28 23 0.79
29 2 0.07
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATATCATTT
Found at i:45220152 original size:16 final size:16
Alignment explanation
Indices: 45220131--45220169 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
45220121 TTAAACTTTT
*
45220131 GGCTTTTTGACATTTC
1 GGCTTTTCGACATTTC
**
45220147 GGCTTTTCGGTATTTC
1 GGCTTTTCGACATTTC
45220163 GGCTTTT
1 GGCTTTT
45220170 GCCGATCTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.18, G:0.23, T:0.51
Consensus pattern (16 bp):
GGCTTTTCGACATTTC
Found at i:45228085 original size:27 final size:27
Alignment explanation
Indices: 45228046--45228098 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
45228036 ACATTAGGTG
* *
45228046 TTCTTGGAGATCTTCCCCTTCGAAACC
1 TTCTTGGAAATCTTCCCCTTCAAAACC
*
45228073 TTCTTGGAAATCTTTCCCTTCAAAAC
1 TTCTTGGAAATCTTCCCCTTCAAAAC
45228099 ATTTCCCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.30, G:0.11, T:0.36
Consensus pattern (27 bp):
TTCTTGGAAATCTTCCCCTTCAAAACC
Found at i:45243124 original size:15 final size:14
Alignment explanation
Indices: 45243091--45243128 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
45243081 CATTTTTTAT
*
45243091 AAAAG-AAAAAGAA
1 AAAAGAAAAAAAAA
45243104 AAAAGAAAAAAAAA
1 AAAAGAAAAAAAAA
45243118 AAGAAGAAAAA
1 AA-AAGAAAAA
45243129 GAGCTGGTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 5 0.23
14 9 0.41
15 8 0.36
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAA
Found at i:45243127 original size:13 final size:12
Alignment explanation
Indices: 45243091--45243128 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
45243081 CATTTTTTAT
45243091 AAAAGAAAAAGAA
1 AAAAGAAAAA-AA
45243104 AAAAGAAAAAAA
1 AAAAGAAAAAAA
45243116 AAAAGAAGAAAAA
1 AAAAGAA-AAAAA
45243129 GAGCTGGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:45249945 original size:6 final size:6
Alignment explanation
Indices: 45249934--45249958 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
45249924 GCAATGATGT
45249934 AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA A
45249959 TGGTTTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:45254380 original size:28 final size:28
Alignment explanation
Indices: 45254336--45254443 Score: 112
Period size: 28 Copynumber: 3.9 Consensus size: 28
45254326 ACATACCTGT
* * *
45254336 ATATAGCCCATTCGGCCCAATCTCTTTC
1 ATATGGCCCATTAGGCCCAATCACTTTC
*
45254364 ATATGGCCCAGTAGGCCCAATCACATTT-
1 ATATGGCCCATTAGGCCCAATCAC-TTTC
* * *
45254392 ATGTGGCTCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCC-AATCACTTTC
*
45254421 ATACGG-CCATTAGGCCCAATCAC
1 ATATGGCCCATTAGGCCCAATCAC
45254444 ATTTACAATT
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
27 6 0.09
28 47 0.71
29 13 0.20
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCACTTTC
Found at i:45257489 original size:141 final size:141
Alignment explanation
Indices: 45257300--45257578 Score: 522
Period size: 141 Copynumber: 2.0 Consensus size: 141
45257290 TTCATTTTGT
* *
45257300 TTATGGCCATAAGATATGTCTCATTTTGATGAAGGTTGTCAACTTACTAATTGTGCATGTCATAC
1 TTATGGCCATAAGATATGTCTCATTTTGATGAAGGTTGTAAACCTACTAATTGTGCATGTCATAC
* *
45257365 TTGAATGTTTCATGGCATGGTTAATGTGATATACCATGGATGGATATGTGTATTGTGGTTGAATC
66 TTGAATGTTTCATGACATGGTTAATATGATATACCATGGATGGATATGTGTATTGTGGTTGAATC
45257430 ACTTGGAGTGG
131 ACTTGGAGTGG
45257441 TTATGGCCATAAGATATGTCTCATTTTGATGAAGGTTGTAAACCTACTAATTGTGCATGTCATAC
1 TTATGGCCATAAGATATGTCTCATTTTGATGAAGGTTGTAAACCTACTAATTGTGCATGTCATAC
45257506 TTGAATGTTTCATGACATGGTTAATATGATATACCATGGATGGATATGTGTATTGTGGTTGAATC
66 TTGAATGTTTCATGACATGGTTAATATGATATACCATGGATGGATATGTGTATTGTGGTTGAATC
45257571 ACTTGGAG
131 ACTTGGAG
45257579 ATGGCTAGGA
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 134 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (141 bp):
TTATGGCCATAAGATATGTCTCATTTTGATGAAGGTTGTAAACCTACTAATTGTGCATGTCATAC
TTGAATGTTTCATGACATGGTTAATATGATATACCATGGATGGATATGTGTATTGTGGTTGAATC
ACTTGGAGTGG
Found at i:45257679 original size:30 final size:30
Alignment explanation
Indices: 45257645--45257711 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
45257635 TGACATGCAA
*
45257645 CATTGAAGTGTTTTTTGAAAACCATGTTTT
1 CATTGAAGTGTTTTTCGAAAACCATGTTTT
45257675 CATTGAAGTGTTTTTCGAAAACCATGTTTT
1 CATTGAAGTGTTTTTCGAAAACCATGTTTT
45257705 CATTGAA
1 CATTGAA
45257712 AACCCTTCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.43
Consensus pattern (30 bp):
CATTGAAGTGTTTTTCGAAAACCATGTTTT
Found at i:45257714 original size:18 final size:18
Alignment explanation
Indices: 45257659--45257715 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 18
45257649 GAAGTGTTTT
45257659 TTGAAAACCATGTTTTCA
1 TTGAAAACCATGTTTTCA
*
45257677 TTG--AA--GTGTTTT--
1 TTGAAAACCATGTTTTCA
*
45257689 TCGAAAACCATGTTTTCA
1 TTGAAAACCATGTTTTCA
45257707 TTGAAAACC
1 TTGAAAACC
45257716 CTTCTTAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 12
0.64 0.09 0.27
Matches are distributed among these distances:
12 2 0.07
14 8 0.28
16 8 0.28
18 11 0.38
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (18 bp):
TTGAAAACCATGTTTTCA
Found at i:45259173 original size:27 final size:27
Alignment explanation
Indices: 45259143--45259242 Score: 123
Period size: 27 Copynumber: 3.7 Consensus size: 27
45259133 TACCCTATAG
*
45259143 GGGTAGTTT-GGTAATTTTCCAAACCGA
1 GGGTA-TTTCGGTAATTTTACAAACCGA
* *
45259170 GGGTATTTCGGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAACCGA
*
45259197 GGGTATTTCGGTAATTTTACAAAATCGA
1 GGGTATTTCGGTAATTTTAC-AAACCGA
*
45259225 -GGTATTTCGATAATTTTA
1 GGGTATTTCGGTAATTTTA
45259243 AACAGTTTGG
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 3 0.05
27 57 0.86
28 6 0.09
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACCGA
Found at i:45270694 original size:27 final size:27
Alignment explanation
Indices: 45270659--45270864 Score: 161
Period size: 27 Copynumber: 7.6 Consensus size: 27
45270649 TTATTTTACC
45270659 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTAGCA
45270686 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTAGCA
* * * * *
45270713 AAATTACTAGAATACCCTTGGTTTA-TA
1 AAATTACCAAAATACCC-TCGATTAGCA
* * *
45270740 AAATCACCAAAATACCCT-TAGTTTGCA
1 AAATTACCAAAATACCCTCGA-TTAGCA
* * **
45270767 AAATTACCAATATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTAGCA
* * *
45270794 AAATTATCGAAATACCCTCGACTT-GTA
1 AAATTACCAAAATACCCTCGA-TTAGCA
* *
45270821 AAATTACCAAAGTACCCCCGATTTA-CA
1 AAATTACCAAAATACCCTCGA-TTAGCA
**
45270848 AAATTATTAAAATACCC
1 AAATTACCAAAATACCC
45270865 CTGTAGGGTA
Statistics
Matches: 141, Mismatches: 30, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
26 3 0.02
27 129 0.91
28 9 0.06
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTAGCA
Found at i:45270823 original size:81 final size:81
Alignment explanation
Indices: 45270659--45270864 Score: 195
Period size: 81 Copynumber: 2.5 Consensus size: 81
45270649 TTATTTTACC
* *
45270659 AAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCTCGATTAGCAAAATTACTAGA
1 AAATTACCAAAATACCCTAGATTAGCAAAATTACCAAAATACCCTCGATTAGCAAAATTACGAGA
* **
45270724 ATACCCTTGGTTTATA
66 ATACCCTCGACTTATA
* * * * **
45270740 AAATCACCAAAATACCCTTAG-TTTGCAAAATTACCAATATACCC-CTGATTTGTGAAATTATCG
1 AAATTACCAAAATACCC-TAGATTAGCAAAATTACCAAAATACCCTC-GATTAGCAAAATTA-CG
*
45270803 A-AATACCCTCGACTTGTA
63 AGAATACCCTCGACTTATA
* ** **
45270821 AAATTACCAAAGTACCCCCGATTTA-CAAAATTATTAAAATACCC
1 AAATTACCAAAATACCCTAGA-TTAGCAAAATTACCAAAATACCC
45270865 CTGTAGGGTA
Statistics
Matches: 100, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
80 2 0.02
81 92 0.92
82 6 0.06
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (81 bp):
AAATTACCAAAATACCCTAGATTAGCAAAATTACCAAAATACCCTCGATTAGCAAAATTACGAGA
ATACCCTCGACTTATA
Found at i:45270887 original size:27 final size:27
Alignment explanation
Indices: 45270857--45270963 Score: 133
Period size: 27 Copynumber: 4.0 Consensus size: 27
45270847 AAAATTATTA
* *
45270857 AAATACCCCTGTAGGGTAGAGTTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
45270884 AAATACGCTTGTAGGCTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
45270911 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
45270938 AGATACCCTTGTAGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
45270964 ATTTTGCCCC
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:45271344 original size:22 final size:22
Alignment explanation
Indices: 45271311--45271369 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
45271301 CACGTTATCG
45271311 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
45271333 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
45271355 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
45271370 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:45271556 original size:27 final size:27
Alignment explanation
Indices: 45271526--45271590 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
45271516 ATTCTGTTAA
* *
45271526 GTGGCTTTGCCA-TATTATCTGATTCTG
1 GTGGCTTTGCCACAAATATCTG-TTCTG
*
45271553 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTTTGCCACAAATATCTGTTCTG
*
45271580 GAGGCTTTGCC
1 GTGGCTTTGCC
45271591 TCAATTTACT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 25 0.78
28 7 0.22
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.37
Consensus pattern (27 bp):
GTGGCTTTGCCACAAATATCTGTTCTG
Found at i:45271771 original size:6 final size:6
Alignment explanation
Indices: 45271733--45271852 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
45271723 TTGCATTCAC
* * *
45271733 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
45271783 -TTACCTA ATACTG ATTCTG ATTCTG ATTCTG -TCATCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
45271833 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
45271853 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 67 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:45271779 original size:31 final size:31
Alignment explanation
Indices: 45271733--45271843 Score: 159
Period size: 31 Copynumber: 3.5 Consensus size: 31
45271723 TTGCATTCAC
* *
45271733 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTAATACTG
*
45271765 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
* * *
45271796 ATTCTGATTCTGATTCTGTCATCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
45271827 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
45271844 AGTTCTGATA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
31 67 0.91
32 7 0.09
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTAATACTG
Found at i:45289591 original size:40 final size:40
Alignment explanation
Indices: 45289493--45289755 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
45289483 TCCTCGTTCA
* * * * *
45289493 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
45289532 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
45289572 AATGCCTTCGGGGCTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
45289612 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
45289652 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
45289692 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
45289732 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
45289756 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:45289764 original size:41 final size:41
Alignment explanation
Indices: 45289687--45289764 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
45289677 TTAATATCTC
* * *
45289687 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
45289728 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
45289765 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:45295498 original size:26 final size:27
Alignment explanation
Indices: 45295467--45295520 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
45295457 TCACACACTT
*
45295467 AGTGCC-CACTGACCGATCTCGCACAC
1 AGTGCCTCAATGACCGATCTCGCACAC
*
45295493 AGTGCCTCAATTACCGATCTCGCACAC
1 AGTGCCTCAATGACCGATCTCGCACAC
45295520 A
1 A
45295521 TAGTGCTCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.26, C:0.39, G:0.17, T:0.19
Consensus pattern (27 bp):
AGTGCCTCAATGACCGATCTCGCACAC
Found at i:45295760 original size:43 final size:42
Alignment explanation
Indices: 45295724--45295976 Score: 335
Period size: 43 Copynumber: 5.9 Consensus size: 42
45295714 CACCGGAATT
* *
45295724 AAGCCTGTTAGGCACAAAGACCCGAATACACATCACCGGCATG
1 AAGCCTGCTAGGCACAAAG-CCCGAATACACATCACCGGCACG
* *
45295767 AAGCCTGCTAGGCACAATTGCCCGAATACACATCACTGGCACG
1 AAGCCTGCTAGGCACAA-AGCCCGAATACACATCACCGGCACG
*
45295810 AAGCCTACTAGGCACGAAAGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCAC-AAAGCCCGAATACACATCACCGGCACG
*
45295853 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCAC-AAAGCCCGAATACACATCACCGGCACG
* *
45295896 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACA
1 AAGCCTGCTAGGCAC-AAAGCCCGAATACACATCACCGGCACG
* * * * *
45295939 AAGCCTACTAGGCATGAAGGCTCAAATACACATCACCG
1 AAGCCTGCTAGGCA-CAAAGCCCGAATACACATCACCG
45295977 AGTTTCATGC
Statistics
Matches: 193, Mismatches: 14, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
43 190 0.98
44 3 0.02
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.12
Consensus pattern (42 bp):
AAGCCTGCTAGGCACAAAGCCCGAATACACATCACCGGCACG
Found at i:45295943 original size:129 final size:129
Alignment explanation
Indices: 45295724--45295976 Score: 391
Period size: 129 Copynumber: 2.0 Consensus size: 129
45295714 CACCGGAATT
* * *
45295724 AAGCCTGTTAGGCACAAAGACCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACAATTGCC
1 AAGCCTGCTAGGCACAAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAATGGCC
* * *
45295789 CGAATACACATCACTGGCACGAAGCCTACTAGGCACGAAAGCCCGAATACACATCACCGGCACG
66 CGAATACACATCACCGGCACAAAGCCTACTAGGCACGAAAGCCCAAATACACATCACCGGCACG
* *
45295853 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAA-GGC
1 AAGCCTGCTAGGCACAAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCAC-AATGGC
* * *
45295917 CCGAATACACATCACCGGCACAAAGCCTACTAGGCATGAAGGCTCAAATACACATCACCG
65 CCGAATACACATCACCGGCACAAAGCCTACTAGGCACGAAAGCCCAAATACACATCACCG
45295977 AGTTTCATGC
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
129 110 0.98
130 2 0.02
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.12
Consensus pattern (129 bp):
AAGCCTGCTAGGCACAAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAATGGCC
CGAATACACATCACCGGCACAAAGCCTACTAGGCACGAAAGCCCAAATACACATCACCGGCACG
Found at i:45316070 original size:4 final size:4
Alignment explanation
Indices: 45316061--45316089 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
45316051 AGTGTAGGTG
45316061 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
45316090 TAGTGAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:45316804 original size:8 final size:8
Alignment explanation
Indices: 45316770--45316820 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
45316760 GCAAAAGCCA
*
45316770 AAATGCCA
1 AAATGCCG
*
45316778 AAATGCTG
1 AAATGCCG
* *
45316786 AAAAGCTG
1 AAATGCCG
*
45316794 AAATACCG
1 AAATGCCG
45316802 AAATGCCG
1 AAATGCCG
45316810 AAATGCCG
1 AAATGCCG
45316818 AAA
1 AAA
45316821 AGTCGAAAGG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.14
Consensus pattern (8 bp):
AAATGCCG
Found at i:45316804 original size:16 final size:16
Alignment explanation
Indices: 45316785--45316828 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
45316775 CCAAAATGCT
*
45316785 GAAAAGCTGAAATACC
1 GAAAAGCCGAAATACC
* *
45316801 GAAATGCCGAAATGCC
1 GAAAAGCCGAAATACC
*
45316817 GAAAAGTCGAAA
1 GAAAAGCCGAAA
45316829 GGTTAGCTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (16 bp):
GAAAAGCCGAAATACC
Found at i:45317123 original size:28 final size:28
Alignment explanation
Indices: 45317045--45317126 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 28
45317035 CATGAATATG
* *
45317045 AATGTGACTTAGGCCTGATGGGCCATATA
1 AATGTGA-TTGGGCCTGATGGGCCATAAA
** * *
45317074 AATGAAAATTGAGCCTAATGGGCCATAAA
1 AATG-TGATTGGGCCTGATGGGCCATAAA
*
45317103 AATGTGATTGGGCCTGGTGGGCCA
1 AATGTGATTGGGCCTGATGGGCCA
45317127 CATACAAGTA
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
28 15 0.37
29 25 0.61
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.24
Consensus pattern (28 bp):
AATGTGATTGGGCCTGATGGGCCATAAA
Found at i:45318491 original size:37 final size:37
Alignment explanation
Indices: 45318449--45318519 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
45318439 GTAAAGAATT
* * *
45318449 ACACTTCTCGCCGTATAAATGATGTTGCCGAATTATG
1 ACACTTCCCACCGTATAAATGATGTCGCCGAATTATG
45318486 ACACTTCCCACCGTATAAATGATGTCGCCGAATT
1 ACACTTCCCACCGTATAAATGATGTCGCCGAATT
45318520 TTCAATGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (37 bp):
ACACTTCCCACCGTATAAATGATGTCGCCGAATTATG
Found at i:45323205 original size:48 final size:48
Alignment explanation
Indices: 45323097--45323339 Score: 283
Period size: 48 Copynumber: 5.1 Consensus size: 48
45323087 CTCAAGACTT
* * * * *
45323097 TCGCACCCTAGGTGCCAACATCATGGCCCAAAGCCAAATCAATAG-AGC
1 TCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAAT-GTAAC
* * *
45323145 TCGTACCCGAAGTGAC-AATATTATGGCCCCAAGCCAAATCAATGTAAC
1 TCGCACCCGAAGTG-CTAATATCATGGCCCAAAGCCAAATCAATGTAAC
* * ** *
45323193 TCGCACCTGAAGTGCTAATATCATGGACTTAAGCCAAATCAATATAAC
1 TCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAAC
* * *
45323241 TCGCACCCGAAGTGCTACTATCATGGCCCAAACCCAAATCAGTGTAAC
1 TCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAAC
** *
45323289 TTACACCCGAAGTACTAATATCATGGCCCAAAGCCAAATCAATGTAAC
1 TCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAAC
45323337 TCG
1 TCG
45323340 TAATGTCACG
Statistics
Matches: 162, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
47 2 0.01
48 159 0.98
49 1 0.01
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (48 bp):
TCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAAC
Found at i:45324570 original size:27 final size:27
Alignment explanation
Indices: 45324535--45324793 Score: 272
Period size: 27 Copynumber: 9.6 Consensus size: 27
45324525 TTAGCATACC
* *
45324535 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
45324562 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
45324589 AAATTAGCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
45324616 AAATTAGCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
45324643 AAATTACCAAAATACTCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
45324670 AAATTAACAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
45324697 AAATTACCGAAATACCCTCGATTTGCA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
45324724 AAATTACTAAAATACCTTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
45324751 AAATTACTGAAATACCC-CAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
45324777 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
45324794 CTGTAGGGTA
Statistics
Matches: 200, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
26 24 0.12
27 175 0.88
28 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:45324670 original size:81 final size:78
Alignment explanation
Indices: 45324535--45324793 Score: 313
Period size: 81 Copynumber: 3.2 Consensus size: 78
45324525 TTAGCATACC
*
45324535 AAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCATTGGTTTGTAAAATTAGCAAA
1 AAATTACCAAAATACCCTCGATTTGCAAAATTACCAAAATACC-TTGGTTTGTAAAATTA-CAAA
*
45324600 ATACCCTTGGTTTGTA
64 ATACCC-TGATTTGTA
* * *
45324616 AAATTAGCAAAATACCC-CTGGTTTGTAAAATTACCAAAATACTCTTGGTTTGTAAAATTAACAA
1 AAATTACCAAAATACCCTC-GATTTGCAAAATTACCAAAATAC-CTTGGTTTGTAAAATT-ACAA
*
45324680 AATACCCCTGATTTGTG
63 AATA-CCCTGATTTGTA
* * * *
45324697 AAATTACCGAAATACCCTCGATTTGCAAAATTACTAAAATACCTTCGATTTGTAAAATTACTGAA
1 AAATTACCAAAATACCCTCGATTTGCAAAATTACCAAAATACCTT-GGTTTGTAAAATTAC-AAA
**
45324762 ATACCCCAATTTGTA
64 ATACCCTGATTTGTA
*
45324777 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
45324794 CTGTAGGGTA
Statistics
Matches: 153, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
80 30 0.20
81 117 0.76
82 6 0.04
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (78 bp):
AAATTACCAAAATACCCTCGATTTGCAAAATTACCAAAATACCTTGGTTTGTAAAATTACAAAAT
ACCCTGATTTGTA
Found at i:45324820 original size:27 final size:27
Alignment explanation
Indices: 45324781--45325211 Score: 390
Period size: 27 Copynumber: 16.0 Consensus size: 27
45324771 TTTGTAAAAT
*
45324781 TACTAAAATACCCCTGTAGGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAA
* ** *
45324808 TACCGAAATACCCCTGTAATGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAA
* * *
45324835 TACTGAAATA-CCCTATAAGGTAAAAA
1 TACTGAAATACCCCTGTAGGGTAGAAA
**
45324861 TACCAAAATACCCCTGTAGGGTA-AAA
1 TACTGAAATACCCCTGTAGGGTAGAAA
* * *
45324887 TTACTGAAATACCCCTATAAGGTAAAAA
1 -TACTGAAATACCCCTGTAGGGTAGAAA
*
45324915 TA-TCGAAATACCCCTGTAGGGTAGAAT
1 TACT-GAAATACCCCTGTAGGGTAGAAA
* * *
45324942 TACTAAAATACCCCTGTAAGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAA
* *
45324969 TA-TCGAAATACCCCTGTATGGTAGAAT
1 TACT-GAAATACCCCTGTAGGGTAGAAA
* * *
45324996 TACTGAAATACCCCTATAAGGTAAAAA
1 TACTGAAATACCCCTGTAGGGTAGAAA
**
45325023 TACTGAAATACCCCTGTAACGTAG-AA
1 TACTGAAATACCCCTGTAGGGTAGAAA
* * *
45325049 TAACTGAAATACCCCTATATGGTAGAAT
1 T-ACTGAAATACCCCTGTAGGGTAGAAA
* * * *
45325077 TACCGAAATACTCTTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAA
* *
45325104 TACTGAAATCCCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAA
* *
45325131 TA-TCGAAATACCCTTGTAGGGTAAAAA
1 TACT-GAAATACCCCTGTAGGGTAGAAA
* * *
45325158 TACTGAAAAACCCCTGTAGGATAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAA
* * * *
45325185 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACTGAAATACCCCTGTAGGGTAGAAA
45325211 T
1 T
45325212 TACCATTTTG
Statistics
Matches: 331, Mismatches: 62, Indels: 23
0.80 0.15 0.06
Matches are distributed among these distances:
26 32 0.10
27 291 0.88
28 8 0.02
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
TACTGAAATACCCCTGTAGGGTAGAAA
Found at i:45324845 original size:54 final size:54
Alignment explanation
Indices: 45324778--45325214 Score: 500
Period size: 54 Copynumber: 8.1 Consensus size: 54
45324768 CAATTTGTAA
* * * **
45324778 AATTACTAAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAATGTAG
1 AATTACTGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * *
45324832 AATTACTGAAATA-CCCTATAAGGTAAAAATACCAAAATACCCCTGTAGGGTAA
1 AATTACTGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* *
45324885 AATTACTGAAATACCCCTATAAGGTAAAAATATCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * * *
45324939 AATTACTAAAATACCCCTGTAAGGTAGAATTATCGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * **
45324993 AATTACTGAAATACCCCTATAAGGTAAAAATACTGAAATACCCCTGTAACGTAG
1 AATTACTGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * * *
45325047 AATAACTGAAATACCCCTATATGGTAGAATTACCGAAATACTCTTGTAGGGTAG
1 AATTACTGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * * * * *
45325101 AATTACTGAAATCCCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * * * * * *
45325155 AAATACTGAAAAACCCCTGT-AGGATAGAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTATAAGG-TAGAAATACCGAAATACCCCTGTAGGGTAG
45325209 AATTAC
1 AATTAC
45325215 CATTTTGCCC
Statistics
Matches: 333, Mismatches: 48, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
53 48 0.14
54 285 0.86
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:45324977 original size:81 final size:81
Alignment explanation
Indices: 45324752--45325187 Score: 450
Period size: 81 Copynumber: 5.4 Consensus size: 81
45324742 CGATTTGTAA
** ** * * *
45324752 AATTACTGAAATACCCCAAT-TTGTAAAATTACTAAAATACCCCTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
*
45324816 TACCCCTGTAATGTAG
66 TACCCCTGTAAGGTAG
* * * * * *
45324832 AATTACTGAAATA-CCCTATAAGGTAAAAATACCAAAATACCCCTGTAGGGTAAAATTA-CTGAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATC-GAA
* *
45324895 ATACCCCTATAAGGTAA
65 ATACCCCTGTAAGGTAG
* *
45324912 AAATA-TCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTATCGAA
1 AATTACT-GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAA
*
45324976 ATACCCCTGTATGGTAG
65 ATACCCCTGTAAGGTAG
* * * * * ** *
45324993 AATTACTGAAATACCCCTATAAGGTAAAAATACTGAAATACCCCTGTAACGTAGAA-TAACTGAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATC-GAA
* *
45325057 ATACCCCTATATGGTAG
65 ATACCCCTGTAAGGTAG
* * * * *
45325074 AATTACCGAAATACTCTTGTAGGGTAGAATTACTGAAATCCCCCTGTAGGGTAGAATTATCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
* * *
45325139 TACCCTTGTAGGGTAA
66 TACCCCTGTAAGGTAG
* * *
45325155 AAATACTGAAAAACCCCTGTAGGATAGAATTAC
1 AATTACTGAAATACCCCTGTAGGGTAGAATTAC
45325188 CGAGATACCC
Statistics
Matches: 297, Mismatches: 51, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
79 7 0.02
80 75 0.25
81 210 0.71
82 5 0.02
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (81 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
TACCCCTGTAAGGTAG
Found at i:45325363 original size:21 final size:20
Alignment explanation
Indices: 45325329--45325375 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
45325319 ATTGTTATAC
* *
45325329 ATGAGAGGACATGATATGTT
1 ATGATAGGACATGATATGCT
45325349 ATGATAGGCACATGATATGCT
1 ATGATAGG-ACATGATATGCT
45325370 ATGATA
1 ATGATA
45325376 TACTCATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.30
Consensus pattern (20 bp):
ATGATAGGACATGATATGCT
Found at i:45325461 original size:25 final size:25
Alignment explanation
Indices: 45325425--45325494 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
45325415 AGGAAGTGCT
*
45325425 AAAAGGGCTTTGCCCTAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
45325450 AAAAGGGTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
45325475 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
45325495 ATTAAAAGCG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:45325507 original size:24 final size:24
Alignment explanation
Indices: 45325425--45325507 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
45325415 AGGAAGTGCT
* *
45325425 AAAAGGGCTTTGCCCTAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTA-TA
*
45325450 AAAAGGGTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAT-A
*
45325475 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATA
45325498 AAAAGCGGCT
1 AAAAG-GGCT
45325508 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 38 0.75
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATA
Found at i:45327243 original size:13 final size:13
Alignment explanation
Indices: 45327225--45327249 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45327215 TAATGGTATA
45327225 TTGAATCCATGAC
1 TTGAATCCATGAC
45327238 TTGAATCCATGA
1 TTGAATCCATGA
45327250 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:45327832 original size:27 final size:27
Alignment explanation
Indices: 45327797--45327975 Score: 184
Period size: 27 Copynumber: 6.6 Consensus size: 27
45327787 TTAAATTGTA
45327797 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
45327824 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
45327851 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
45327878 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
45327906 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* *
45327933 TAGCACTAAGTGTGCGAGT-TGATTATA
1 TAGCACTAAGTGTGCGA-TATGACTATG
*
45327960 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
45327976 GGCTCAATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:45327913 original size:82 final size:81
Alignment explanation
Indices: 45327799--45327954 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
45327789 AAATTGTATA
* *
45327799 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
45327863 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
45327880 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
45327945 TGCGAGTTGA
65 TGCGAATTGA
45327955 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:45327966 original size:82 final size:81
Alignment explanation
Indices: 45327795--45327975 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
45327785 GATTAAATTG
* *
45327795 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45327860 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
45327876 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45327940 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
45327958 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
45327976 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:45348458 original size:27 final size:26
Alignment explanation
Indices: 45348410--45348469 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
45348400 GCGACGCTGC
*
45348410 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
45348437 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
45348463 CAGATAT
1 CAGATAT
45348470 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45348560 original size:27 final size:26
Alignment explanation
Indices: 45348512--45348563 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45348502 GCGAGGCTGC
*
45348512 CAGATATTGTGGCGAAGTCACCAGAA
1 CAGATATTGTGGCGAAGCCACCAGAA
* *
45348538 CAGATATATGTGGTGAGGCCACCAGA
1 CAGATAT-TGTGGCGAAGCCACCAGA
45348564 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.33, C:0.19, G:0.29, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCGAAGCCACCAGAA
Found at i:45349289 original size:54 final size:54
Alignment explanation
Indices: 45349217--45349389 Score: 213
Period size: 54 Copynumber: 3.2 Consensus size: 54
45349207 GGGGAAAAAT
* * * *
45349217 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACACGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
* * * * *
45349271 GGTATTTCTACCCTACAAGGGTATTTTGGTATTTCTATCC-TATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTTACAGGGGTATTTC
* * *
45349325 GGTAATTCTACACTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
*
45349379 GATAATTCTAC
1 GGTAATTCTAC
45349390 AACTTATCCA
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.02
54 95 0.96
55 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
Found at i:45349386 original size:27 final size:26
Alignment explanation
Indices: 45349217--45349389 Score: 175
Period size: 27 Copynumber: 6.4 Consensus size: 26
45349207 GGGGAAAAAT
* * * *
45349217 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTA-CCTACAGGGGTATTTC
*
45349244 GGTAATTCTACCTTACACGGGTATTTC
1 GGTAATTCTACC-TACAGGGGTATTTC
* * *
45349271 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTA-CCTACAGGGGTATTTC
* * *
45349298 GGTATTTCTATCCTATAGGGGTATTTT
1 GGTAATTCTA-CCTACAGGGGTATTTC
45349325 GGTAATTCTACACTACAGGGGTATTTC
1 GGTAATTCTAC-CTACAGGGGTATTTC
*
45349352 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACC-TACAGGGGTATTTC
*
45349379 GATAATTCTAC
1 GGTAATTCTAC
45349390 AACTTATCCA
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.03
27 120 0.95
28 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (26 bp):
GGTAATTCTACCTACAGGGGTATTTC
Found at i:45349388 original size:81 final size:81
Alignment explanation
Indices: 45349235--45349388 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 81
45349225 TACCCCACAA
* * * *
45349235 GGGTATCTCGGTAATTCTACCTTACACGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGG
1 GGGTATCTCGGTAATTCTACCTTACACGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
*
45349300 TATTTCTATCCTATAG
66 TAATTCTATCCTATAG
* * * * *
45349316 GGGTATTTTGGTAATTCTACAC-TACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCG
1 GGGTATCTCGGTAATTCTAC-CTTACACGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCG
45349380 ATAATTCTA
65 ATAATTCTA
45349389 CAACTTATCC
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATCTCGGTAATTCTACCTTACACGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
TAATTCTATCCTATAG
Found at i:45350898 original size:27 final size:27
Alignment explanation
Indices: 45350817--45351035 Score: 245
Period size: 27 Copynumber: 8.3 Consensus size: 27
45350807 TTAGTTTACG
* *
45350817 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
45350843 AAATTAC-CAAAGTAGCCCT-GGTTTATA
1 AAATTACTGAAA-TA-CCCTCGATTTGTA
45350870 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
45350897 AAATTACCGAAATACCGTCGA-TTATA
1 AAATTACTGAAATACCCTCGATTTGTA
45350923 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
45350950 AAATTACCG-AATACGCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
45350976 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
45351003 AAATTACTGAAATACCCTCGACTTGT-
1 AAATTACTGAAATACCCTCGATTTGTA
45351029 AAATTAC
1 AAATTAC
45351036 CAAAGTACTC
Statistics
Matches: 161, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
25 4 0.02
26 63 0.39
27 90 0.56
28 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:45350922 original size:53 final size:53
Alignment explanation
Indices: 45350817--45351023 Score: 267
Period size: 53 Copynumber: 3.9 Consensus size: 53
45350807 TTAGTTTACG
* * * *
45350817 AAATTACTGAAATACCC-CCAGTTGTAAAATTACC-AAAGTAGCCCTGGTTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAA-TA-CCCTCGATTATA
*
45350870 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCGTCGATTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTATA
* * **
45350923 AAATTACTGAAATACCCTCGATTTGTAAAATTACCG-AATACGCTCAGTTTGCA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTATA
* *
45350976 AAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA
45351024 CTTGTAAATT
Statistics
Matches: 136, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
52 7 0.05
53 101 0.74
54 25 0.18
55 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (53 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTATA
Found at i:45351033 original size:53 final size:52
Alignment explanation
Indices: 45350817--45351061 Score: 228
Period size: 53 Copynumber: 4.6 Consensus size: 52
45350807 TTAGTTTACG
* * * * * *
45350817 AAATTACTGAAATACCC-CCAGTTGTAAAATTACC-AAAGTAGCCCTGGTTTAT
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TA-CCCTCGATTGT
* * *
45350869 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCGTCGATTAT
1 -AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* * * *
45350922 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCG-AATACGCTCAGTTTGCA
1 -AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTG-T
*
45350976 AAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTGT
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGT
* * * *
45351029 AAATTACCAAAGTACTCC-CGATTTATAGAATTA
1 AAATTACTAAAATAC-CCTCGATTTGTAAAATTA
45351062 TCGTTTTACC
Statistics
Matches: 166, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
52 7 0.04
53 126 0.76
54 30 0.18
55 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (52 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
Found at i:45351061 original size:106 final size:106
Alignment explanation
Indices: 45350869--45351061 Score: 275
Period size: 106 Copynumber: 1.8 Consensus size: 106
45350859 CCTGGTTTAT
* * *
45350869 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCGTCGATTATAAAATTACTGAA
1 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTATAAAATTACTCAA
*
45350934 ATACCCTCGATTTGTAAAATTACCGAATACGCTCAGTTTGC
66 ATACCCTCGATTTATAAAATTACCGAATACGCTCAGTTTGC
* *
45350975 AAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTGT-AAATTAC-CA
1 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTATAAAATTACTCA
*
45351038 AAGTACTCC-CGATTTATAGAATTA
65 AA-TAC-CCTCGATTTATAAAATTA
45351062 TCGTTTTACC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
105 3 0.04
106 69 0.90
107 5 0.06
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (106 bp):
AAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTATAAAATTACTCAA
ATACCCTCGATTTATAAAATTACCGAATACGCTCAGTTTGC
Found at i:45351098 original size:27 final size:27
Alignment explanation
Indices: 45350817--45351099 Score: 217
Period size: 27 Copynumber: 10.6 Consensus size: 27
45350807 TTAGTTTACG
* * *
45350817 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
* *
45350843 AAATTAC-CAAAGTAGCCCT-GGTTTATA
1 AAATTACTGAAA-TA-CCCTCGATTTATA
*
45350870 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
* *
45350897 AAATTACCGAAATACCGTCGA-TTATA
1 AAATTACTGAAATACCCTCGATTTATA
*
45350923 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
* * **
45350950 AAATTACCG-AATACGCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTATA
* *
45350976 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
* *
45351003 AAATTACTGAAATACCCTCGACTTGT-
1 AAATTACTGAAATACCCTCGATTTATA
*
45351029 AAATTAC-CAAAGTACTCC-CGATTTATA
1 AAATTACTGAAA-TAC-CCTCGATTTATA
* *** *
45351056 GAATTA-TCGTTTTACCCTCGATTTACA
1 AAATTACT-GAAATACCCTCGATTTATA
* *
45351083 AAATTATTAAAATACCC
1 AAATTACTGAAATACCC
45351100 CTGTAGGGTA
Statistics
Matches: 204, Mismatches: 37, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
25 7 0.03
26 74 0.36
27 118 0.58
28 5 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTATA
Found at i:45351114 original size:27 final size:27
Alignment explanation
Indices: 45351092--45351441 Score: 445
Period size: 27 Copynumber: 12.9 Consensus size: 27
45351082 AAAATTATTA
45351092 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* **
45351119 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACTG
*
45351146 AAATACCCCTATAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
*
45351173 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
45351200 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
45351227 AAATACCCCATATAAGGTAGAATTACCG
1 AAATACCCC-TGTAGGGTAGAATTACTG
* * * *
45351255 AAACATCCTTGTAGGGTAGAAATA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
*
45351282 AAATGCCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
45351309 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
45351336 AAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
45351363 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
45351390 AAATACCCTTATAGGGTAGAATTAC-C
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
45351416 AAGATACCCTTGTGGGGTAAAATTAC
1 AA-ATACCCCTGTAGGGTAGAATTAC
45351442 CATTTTGCCC
Statistics
Matches: 281, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 257 0.91
28 22 0.08
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:45352061 original size:27 final size:26
Alignment explanation
Indices: 45352031--45352136 Score: 104
Period size: 27 Copynumber: 4.0 Consensus size: 26
45352021 ATTCTATTAA
* *
45352031 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTATGCCACAATATCT-TTTCTG
*
45352058 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTTTTCTG
* *
45352085 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCT-TTTCTG
* * * *
45352112 GTGACTCTGTCACAATATCTGTTCT
1 GTGGCTATGCCACAATATCTTTTCT
45352137 AGTAGCCATG
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.15
27 51 0.76
28 6 0.09
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTTTTCTG
Found at i:45352096 original size:54 final size:53
Alignment explanation
Indices: 45352031--45352136 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
45352021 ATTCTATTAA
* * * *
45352031 GTGGCTTTGCCACATTATCTATTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCAC-AATATCTGTTCTG
* * *
45352085 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTCT
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTGTTCT
45352137 AGTAGCCATG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 12 0.27
54 33 0.73
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.38
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:45352264 original size:6 final size:6
Alignment explanation
Indices: 45352255--45352321 Score: 73
Period size: 6 Copynumber: 10.8 Consensus size: 6
45352245 TTGCATTCAC
* * *
45352255 ATTCTG ATTCTG ATTCTG TTATCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
45352305 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
45352322 CATTTTGGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
5 1 0.02
6 41 0.80
7 8 0.16
8 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:45352286 original size:25 final size:25
Alignment explanation
Indices: 45352258--45352321 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
45352248 CATTCACATT
* *
45352258 CTGATTCTGATTCTGTTATCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
45352283 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
45352308 CTGATTCTGATTCT
1 CTGATTCTGATTCT
45352322 CATTTTGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:45353094 original size:21 final size:20
Alignment explanation
Indices: 45353066--45353104 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
45353056 CAAAACTTGT
45353066 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
45353086 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
45353105 CAAAATAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:45356696 original size:21 final size:21
Alignment explanation
Indices: 45356672--45356714 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
45356662 TTTCAATCTG
*
45356672 TCTTTTATTATCTT-CACCATT
1 TCTTCTATT-TCTTGCACCATT
45356693 TCTTCTATTTCTTGCACCATT
1 TCTTCTATTTCTTGCACCATT
45356714 T
1 T
45356715 TTAGCCCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.16, C:0.26, G:0.02, T:0.56
Consensus pattern (21 bp):
TCTTCTATTTCTTGCACCATT
Found at i:45361008 original size:27 final size:27
Alignment explanation
Indices: 45360947--45361012 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
45360937 TGGATCAGAA
* *
45360947 TGCTCACACGAGTTGTGAAAATGGGCT
1 TGCTCACACGAGTTGTAAAAATGGCCT
* *
45360974 TGCACACATGAGTTGTAAAAATAGGCCT
1 TGCTCACACGAGTTGTAAAAAT-GGCCT
45361002 T-CTCACACGAG
1 TGCTCACACGAG
45361013 ATGTGGGTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (27 bp):
TGCTCACACGAGTTGTAAAAATGGCCT
Found at i:45369705 original size:77 final size:77
Alignment explanation
Indices: 45369590--45369732 Score: 187
Period size: 77 Copynumber: 1.9 Consensus size: 77
45369580 GTACTTATAC
* ** * ** * *
45369590 CATGGCCCGAAGCCAAATCAGGATAGCTTATATTTGAAGTACTGATATCATGGCCCAAATCCAAA
1 CATGGCCCGAAGCCAAATCAGGATAACGCACACCTGAAGTACTAATATCATGGCCCAAAGCCAAA
45369655 TAAACCGATATT
66 TAAACCGATATT
* * *
45369667 CATGGCCCGAAGCCAAATCAGTATAACGCACACCTGAAGTGCTAATATCATGGCCCGAAGCCAAA
1 CATGGCCCGAAGCCAAATCAGGATAACGCACACCTGAAGTACTAATATCATGGCCCAAAGCCAAA
45369732 T
66 T
45369733 TAATGTTCCC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
77 55 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (77 bp):
CATGGCCCGAAGCCAAATCAGGATAACGCACACCTGAAGTACTAATATCATGGCCCAAAGCCAAA
TAAACCGATATT
Found at i:45370342 original size:45 final size:45
Alignment explanation
Indices: 45370292--45370382 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
45370282 TCACTTTACA
45370292 AAATATGTAAATCTAGCAACAAGATTTCATATTTCATCATCAAAC
1 AAATATGTAAATCTAGCAACAAGATTTCATATTTCATCATCAAAC
45370337 AAATATGTAAATCTAGCAACAAGATTTCATATTTCATCATCAAAC
1 AAATATGTAAATCTAGCAACAAGATTTCATATTTCATCATCAAAC
45370382 A
1 A
45370383 TCAAAGTACA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.31
Consensus pattern (45 bp):
AAATATGTAAATCTAGCAACAAGATTTCATATTTCATCATCAAAC
Found at i:45386722 original size:87 final size:87
Alignment explanation
Indices: 45386575--45386748 Score: 321
Period size: 87 Copynumber: 2.0 Consensus size: 87
45386565 CTTTAGCTCA
45386575 TTTAACACATTTGATTACTTTTACCGTTGTTCACATAAAAATTGCTAGGCATAAAGCCTAGTATA
1 TTTAACACATTTGATTACTTTTACCGTTGTTCACATAAAAATTGCTAGGCATAAAGCCTAGTATA
*
45386640 ATACACCCGCATAGAGCCTGCT
66 ATACACCCGCACAGAGCCTGCT
* *
45386662 TTTAACACATTTGATTACTTTTACCGTTGTTCACATAAAATTTGCTAGGCATAAATCCTAGTATA
1 TTTAACACATTTGATTACTTTTACCGTTGTTCACATAAAAATTGCTAGGCATAAAGCCTAGTATA
45386727 ATACACCCGCACAGAGCCTGCT
66 ATACACCCGCACAGAGCCTGCT
45386749 AGGCAATAAG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (87 bp):
TTTAACACATTTGATTACTTTTACCGTTGTTCACATAAAAATTGCTAGGCATAAAGCCTAGTATA
ATACACCCGCACAGAGCCTGCT
Found at i:45386794 original size:43 final size:40
Alignment explanation
Indices: 45386725--45386882 Score: 199
Period size: 41 Copynumber: 3.8 Consensus size: 40
45386715 AATCCTAGTA
* *
45386725 TAATACACCCGCACAGAGCCTGCTAGGCAATAAGCCTGATA
1 TAATACA-CCGCACAAAGCCTGCTAGGCAATAAGCCTGATT
* *
45386766 TAATACACCGACATATAAAGCCTGCTAGGCAATAAACCTGATT
1 TAATACACCG-C--ACAAAGCCTGCTAGGCAATAAGCCTGATT
*
45386809 TAATACACCGGCACAAAGCTTGCTAGGCAATAAGCCTGATT
1 TAATACACC-GCACAAAGCCTGCTAGGCAATAAGCCTGATT
* *
45386850 TAATTCACCGGGACAAAGCCTGCTAGGCAATAA
1 TAATACACC-GCACAAAGCCTGCTAGGCAATAA
45386883 AGCCCGAATA
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
40 3 0.03
41 64 0.62
43 35 0.34
44 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (40 bp):
TAATACACCGCACAAAGCCTGCTAGGCAATAAGCCTGATT
Found at i:45386833 original size:84 final size:83
Alignment explanation
Indices: 45386704--45386883 Score: 231
Period size: 84 Copynumber: 2.2 Consensus size: 83
45386694 ACATAAAATT
*
45386704 TGCTAGGC-ATAAATCCTAGTATAATACACCCGCACAGAGCCTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAATAAATCCTAGTATAATACACCCGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
* *
45386768 ATACACCGACATATAAAGCC
66 ATACACCG--AGACAAAGCC
* * * *
45386788 TGCTAGGCAATAAA-CCT-GATTTAATACACCGGCACAAAGCTTGCTAGGCAATAAGCCTGATTT
1 TGCTAGGCAATAAATCCTAG-TATAATACACCCGCACAAAGCCTGCTAGGCAATAAGCCTGATAT
* *
45386851 AATTCACCGGGACAAAGCC
65 AATACACCGAGACAAAGCC
45386870 TGCTAGGCAATAAA
1 TGCTAGGCAATAAA
45386884 GCCCGAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
82 21 0.25
83 1 0.01
84 58 0.68
85 5 0.06
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.21
Consensus pattern (83 bp):
TGCTAGGCAATAAATCCTAGTATAATACACCCGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
ATACACCGAGACAAAGCC
Found at i:45389321 original size:19 final size:20
Alignment explanation
Indices: 45389299--45389338 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
45389289 TTTAATTTCT
*
45389299 TTTTTTATTCCTATT-TTTA
1 TTTTTTATTCATATTATTTA
45389318 TTTTTTATTCATATTATTTA
1 TTTTTTATTCATATTATTTA
45389338 T
1 T
45389339 GATATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTTTATTCATATTATTTA
Found at i:45396904 original size:19 final size:20
Alignment explanation
Indices: 45396882--45396919 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
45396872 TAATTTCTTC
*
45396882 TTTTATTCCTATT-TTTATT
1 TTTTATTCATATTATTTATT
45396901 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
45396920 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTATTCATATTATTTATT
Found at i:45402981 original size:41 final size:41
Alignment explanation
Indices: 45402919--45403094 Score: 212
Period size: 41 Copynumber: 4.2 Consensus size: 41
45402909 TAAAATTTGT
*
45402919 TAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCCTGC
1 TAGGCAAT-AAGCCTGAG-ATAATACACCGGCACAAAGCCTGC
* * *
45402960 TAGGCAATAAGCCTGAGATAATACACCAGCATATAAAGCCTAC
1 TAGGCAATAAGCCTGAGATAATACACCGGC--ACAAAGCCTGC
* **
45403003 TAGGCAAAAAGCCTGATTTAATACACCGGCACAAAGCCTGC
1 TAGGCAATAAGCCTGAGATAATACACCGGCACAAAGCCTGC
** *
45403044 TAGGCAATAAGCCTGATTTAATACACCGGCACAGAGCCTGC
1 TAGGCAATAAGCCTGAGATAATACACCGGCACAAAGCCTGC
45403085 TAGGCAATAA
1 TAGGCAATAA
45403095 AGCCCAAATA
Statistics
Matches: 119, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
41 81 0.68
42 4 0.03
43 34 0.29
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (41 bp):
TAGGCAATAAGCCTGAGATAATACACCGGCACAAAGCCTGC
Found at i:45404821 original size:26 final size:27
Alignment explanation
Indices: 45404750--45404859 Score: 129
Period size: 26 Copynumber: 4.1 Consensus size: 27
45404740 AGCATGGCTG
* *
45404750 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
45404776 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
45404804 TCAGA-A-AGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
45404830 CCAGAT-CAGATATTGTGGCATAGCCA
1 CCAGATACAGATAATGTGGCAGAGCCA
45404856 CCAG
1 CCAG
45404860 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
26 42 0.58
27 17 0.23
28 14 0.19
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:45404833 original size:54 final size:52
Alignment explanation
Indices: 45404751--45404855 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 52
45404741 GCATGGCTGC
*
45404751 CAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCAT
1 CAGAACAGATAATGTGACAGAGCCACCAGAT-CAGAT-ATCGTGGCAGAGCCAT
* * *
45404805 CAGAA-AGATATATGTGGCAGAGCCACCAGATCAGATATTGTGGCATAGCCA
1 CAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATATCGTGGCAGAGCCA
45404856 CCAGGACGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
52 13 0.28
53 10 0.22
54 23 0.50
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (52 bp):
CAGAACAGATAATGTGACAGAGCCACCAGATCAGATATCGTGGCAGAGCCAT
Found at i:45404997 original size:26 final size:27
Alignment explanation
Indices: 45404961--45405041 Score: 101
Period size: 28 Copynumber: 3.0 Consensus size: 27
45404951 CAAAAGTACC
**
45404961 CCTAGGGGTATAATGGTAATTTTAC-A
1 CCTAGGGGTATAACAGTAATTTTACTA
*
45404987 CCTAGGGGTATAACAGTAATTTTTCCTA
1 CCTAGGGGTATAACAGTAA-TTTTACTA
* *
45405015 CATAGGGGTATAACAGTAATTTAACTA
1 CCTAGGGGTATAACAGTAATTTTACTA
45405042 TTCTTAAGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 17 0.36
27 11 0.23
28 19 0.40
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTACTA
Found at i:45411651 original size:15 final size:15
Alignment explanation
Indices: 45411623--45411653 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
45411613 CAATCTTTAT
45411623 AAAATTTTGTTTTTG
1 AAAATTTTGTTTTTG
45411638 AAAATCTTTGTTTTTG
1 AAAAT-TTTGTTTTTG
45411654 TAAACCCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (15 bp):
AAAATTTTGTTTTTG
Found at i:45412700 original size:27 final size:26
Alignment explanation
Indices: 45412622--45412734 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 26
45412612 TAGCATGGCT
* * *
45412622 ACCAGAATAGATTATGTGACAGAGTC
1 ACCAGAATAGATAATGTGGCAGAGCC
* * *
45412648 ACCAGATACAGATAATCATGGTAGAGCC
1 ACCAGA-ATAGATAAT-GTGGCAGAGCC
45412676 ACCAGAATAGATATATGTGGCAGAGCC
1 ACCAGAATAGATA-ATGTGGCAGAGCC
*
45412703 ACCA-AATTAGATAATTGTGGCATAGCC
1 ACCAGAA-TAGATAA-TGTGGCAGAGCC
45412730 ACCAG
1 ACCAG
45412735 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
26 9 0.13
27 47 0.66
28 15 0.21
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.20
Consensus pattern (26 bp):
ACCAGAATAGATAATGTGGCAGAGCC
Found at i:45412730 original size:54 final size:54
Alignment explanation
Indices: 45412622--45412734 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
45412612 TAGCATGGCT
* * *
45412622 ACCAGAATAGATTATGTGACAGAGTCACCAGATACAGATAATCATGGTAGAGCC
1 ACCAGAATAGATTATGTGACAGAGCCACCAAATACAGATAATCATGGCAGAGCC
* * ** *
45412676 ACCAGAATAGATATATGTGGCAGAGCCACCAAAT-TAGATAATTGTGGCATAGCC
1 ACCAGAATAGAT-TATGTGACAGAGCCACCAAATACAGATAATCATGGCAGAGCC
45412730 ACCAG
1 ACCAG
45412735 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.20
Consensus pattern (54 bp):
ACCAGAATAGATTATGTGACAGAGCCACCAAATACAGATAATCATGGCAGAGCC
Found at i:45421575 original size:6 final size:6
Alignment explanation
Indices: 45421564--45421729 Score: 108
Period size: 6 Copynumber: 26.8 Consensus size: 6
45421554 TATCATAACT
* * *
45421564 AGAATC AGAATC AGAATC AG-GTGAC AGAATC AAAATC AGAACC AGAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
* * *
45421613 AGAATT AGGAAAT- AGAATC AGAATC AGTATC AGGTAA-C AAAATC AGAATC
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * * * *
45421663 AGAACC AAAATC AGAATT AGGTAAT- AGAATC AGAATT AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC
45421713 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
45421730 ATGAATGCAA
Statistics
Matches: 125, Mismatches: 20, Indels: 30
0.71 0.11 0.17
Matches are distributed among these distances:
5 11 0.09
6 92 0.74
7 13 0.10
8 9 0.07
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:45421593 original size:19 final size:18
Alignment explanation
Indices: 45421569--45421639 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 18
45421559 TAACTAGAAT
*
45421569 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGG-AA
*
45421588 CAGAATCAAAATCA-GAA
1 CAGAATCAGAATCAGGAA
*
45421605 CCAGAATCAGAATTAGGAAA
1 -CAGAATCAGAATCAGG-AA
*
45421625 TAGAATCAGAATCAG
1 CAGAATCAGAATCAG
45421640 TATCAGGTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.02
18 13 0.30
19 27 0.63
20 2 0.05
ACGTcount: A:0.49, C:0.15, G:0.20, T:0.15
Consensus pattern (18 bp):
CAGAATCAGAATCAGGAA
Found at i:45421602 original size:31 final size:31
Alignment explanation
Indices: 45421564--45421729 Score: 137
Period size: 31 Copynumber: 5.4 Consensus size: 31
45421554 TATCATAACT
*
45421564 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
45421595 AAAATCAGAACCAGAATCA-G-AATTAGGAAAT-
1 AGAATCAGAATCAGAATCAGGTAA-CA-G-AATC
* *
45421626 AGAATCAGAATCAGTATCAGGTAACAAAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
45421657 AGAATCAGAACCAAAATCA-G-AATTAGGTAAT-
1 AGAATCAGAATCAGAATCAGGTAA-CA-G-AATC
* *
45421688 AGAATCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
45421719 AGAATCAGAAT
1 AGAATCAGAAT
45421730 ATGAATGCAA
Statistics
Matches: 104, Mismatches: 19, Indels: 24
0.71 0.13 0.16
Matches are distributed among these distances:
29 3 0.03
30 10 0.10
31 77 0.74
32 10 0.10
33 4 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:45421630 original size:37 final size:37
Alignment explanation
Indices: 45421564--45421678 Score: 99
Period size: 37 Copynumber: 3.1 Consensus size: 37
45421554 TATCATAACT
* **
45421564 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATC
1 AGAACCAGAATCAGAATCAGGAAACAGAATCAAAATC
* * *
45421601 AGAACCAGAATCAGAATTAGGAAATAGAATCAGAATC
1 AGAACCAGAATCAGAATCAGGAAACAGAATCAAAATC
* * * * *
45421638 AGTATCAGGTAA-CAAAATCA-GAATCAGAACCAAAATC
1 AGAACCA-G-AATCAGAATCAGGAAACAGAATCAAAATC
45421675 AGAA
1 AGAA
45421679 TTAGGTAATA
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
37 52 0.85
38 7 0.11
39 2 0.03
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.16
Consensus pattern (37 bp):
AGAACCAGAATCAGAATCAGGAAACAGAATCAAAATC
Found at i:45421633 original size:62 final size:62
Alignment explanation
Indices: 45421563--45421728 Score: 269
Period size: 62 Copynumber: 2.7 Consensus size: 62
45421553 TTATCATAAC
* * * *
45421563 TAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAGAACCAGAATCAGAATTAGGAAA
1 TAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAGAATTAGGAAA
* *
45421625 TAGAATCAGAATCAGTATCAGGTAACAAAATCAGAATCAGAACCAAAATCAGAATTAGGTAA
1 TAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAGAATTAGGAAA
*
45421687 TAGAATCAGAATTAGTATCAGGTAACAGAATCAGAATCAGAA
1 TAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
45421729 TATGAATGCA
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 96 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (62 bp):
TAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAGAATTAGGAAA
Found at i:45421634 original size:25 final size:25
Alignment explanation
Indices: 45421588--45421666 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
45421578 AATCAGGTGA
*
45421588 CAGAATCA--AAATCAGAACCAGAAT
1 CAGAATCAGGAAAT-AGAATCAGAAT
*
45421612 CAGAATTAGGAAATAGAATCAGAAT
1 CAGAATCAGGAAATAGAATCAGAAT
* * * *
45421637 CAGTATCAGGTAACAAAATCAGAAT
1 CAGAATCAGGAAATAGAATCAGAAT
45421662 CAGAA
1 CAGAA
45421667 CCAAAATCAG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
24 7 0.16
25 34 0.76
26 4 0.09
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.16
Consensus pattern (25 bp):
CAGAATCAGGAAATAGAATCAGAAT
Found at i:45421895 original size:27 final size:26
Alignment explanation
Indices: 45421847--45421912 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
45421837 AGCATGGCTG
* *
45421847 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCATGACAGAGCCA
* *
45421873 CCAGATACAGATATTATGGCAGAGCCA
1 CCAGA-ACAGATATCATGACAGAGCCA
*
45421900 CCAAAATCAGATA
1 CCAGAA-CAGATA
45421913 ATGTGGCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 6 0.18
27 27 0.82
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCATGACAGAGCCA
Found at i:45422101 original size:27 final size:27
Alignment explanation
Indices: 45422050--45422101 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
45422040 AGTCGTCAAC
*
45422050 AAATATGTTAGGCACATAGCTATAGGT
1 AAATATGTTAGGCACATAGCCATAGGT
*
45422077 AAATATGTTTGGCACGA-AGCCATAG
1 AAATATGTTAGGCAC-ATAGCCATAG
45422102 TCAAGATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (27 bp):
AAATATGTTAGGCACATAGCCATAGGT
Found at i:45422133 original size:22 final size:22
Alignment explanation
Indices: 45422085--45422143 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45422075 GTAAATATGT
*
45422085 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
45422107 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
45422129 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
45422144 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:45422311 original size:27 final size:26
Alignment explanation
Indices: 45422231--45422313 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
45422221 TCGATCGGTC
* * *
45422231 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
45422257 ATACAGATATTGTGGCAGAGCCATCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
45422284 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
45422311 AAC
1 AAC
45422314 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:45422542 original size:27 final size:27
Alignment explanation
Indices: 45422512--45422707 Score: 214
Period size: 27 Copynumber: 7.3 Consensus size: 27
45422502 GGGGCAAAAT
* * *
45422512 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
45422539 GGTAATTCTACCCTATAAGGGTTTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
45422566 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
45422593 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
45422620 GGTAATTCTATCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
45422647 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
45422674 GGAAATTCTACCCTAC-AGGGCTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
45422701 AGTAATT
1 GGTAATT
45422708 TCTCAATCAA
Statistics
Matches: 140, Mismatches: 28, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
26 3 0.02
27 137 0.98
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:45422578 original size:54 final size:54
Alignment explanation
Indices: 45422512--45422707 Score: 243
Period size: 54 Copynumber: 3.6 Consensus size: 54
45422502 GGGGCAAAAT
* * * * *
45422512 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAAGGGTTTTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTTTTTC
* * *
45422566 GGTATTTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTT-
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGT-TTTTC
* * * *
45422620 GGTAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTTTTTC
*
45422674 GGAAATTCTACCCTAC-AGGGCTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGG-TATTTCAGTAATT
45422708 TCTCAATCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
53 7 0.06
54 109 0.91
55 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTTTTTC
Found at i:45422624 original size:81 final size:82
Alignment explanation
Indices: 45422514--45422707 Score: 241
Period size: 81 Copynumber: 2.4 Consensus size: 82
45422504 GGCAAAATGG
* * * * * *
45422514 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAAGGGT-TTTTCGGTATTTCTACC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTT-AGTAATTCTACC
45422578 CTACAAGGGTATTTC-AA
65 CTACAAGGGTATTTCGAA
* *
45422595 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCC
* * *
45422660 TATAGGGGTATTTCGGA
66 TACAAGGGTATTTCGAA
* *
45422677 -AATTCTACCCTACAGGGCTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
45422708 TCTCAATCAA
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
81 92 0.95
82 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (82 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCC
TACAAGGGTATTTCGAA
Found at i:45422742 original size:27 final size:27
Alignment explanation
Indices: 45422712--45422959 Score: 279
Period size: 27 Copynumber: 9.2 Consensus size: 27
45422702 GTAATTTCTC
* *
45422712 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45422739 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45422766 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
45422793 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45422820 AAGCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
45422847 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45422874 AA-CTAAGGGTAAAACGGTAATT-T-TAA
1 AATC-GAGGGTAAAACGGTAATTCTGT-A
*
45422900 CAATCGAGGGTAAAACAGTAATTCTGTA
1 -AATCGAGGGTAAAACGGTAATTCTGTA
* *
45422928 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45422955 AATCG
1 AATCG
45422960 GGAGTATTTT
Statistics
Matches: 182, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.01
26 4 0.02
27 172 0.95
28 4 0.02
29 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:45422814 original size:81 final size:80
Alignment explanation
Indices: 45422712--45422958 Score: 347
Period size: 81 Copynumber: 3.0 Consensus size: 80
45422702 GTAATTTCTC
* *
45422712 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTTTA-AAATCGAGGGTAAAACGATAATTCTGTAAATC-GAGGGT
**
45422776 AAACCAGTAATTCTGTA
64 AAAATAGTAATTCTGTA
* *
45422793 AATCAAGGGTAAAACGGTAATTTTACAAAGCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTA-AAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
45422858 AAATAGTAATTCTGTA
65 AAATAGTAATTCTGTA
*
45422874 AA-CTAAGGGTAAAACGGTAATTTTAACAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGG
1 AATC-AAGGGTAAAACGGTAATTTTAA-AATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGG
*
45422937 TAAAATGGTAATTCTGTA
63 TAAAATAGTAATTCTGTA
45422955 AATC
1 AATC
45422959 GGGAGTATTT
Statistics
Matches: 150, Mismatches: 11, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
80 2 0.01
81 146 0.97
82 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (80 bp):
AATCAAGGGTAAAACGGTAATTTTAAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAA
AATAGTAATTCTGTA
Found at i:45422988 original size:81 final size:79
Alignment explanation
Indices: 45422712--45422990 Score: 312
Period size: 81 Copynumber: 3.4 Consensus size: 79
45422702 GTAATTTCTC
* * *
45422712 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATC-AGGGTAAAACGGTAATTCTACAAGTCGAGGGTAAAACG-TAATTCTGTAAATC-GAGGGT
**
45422776 AAACCAGTAATTCTGTA
63 AAAATAGTAATTCTGTA
*
45422793 AATCAAGGGTAAAACGGTAATTTTACAAAG-CGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
1 AATC-AGGGTAAAACGGTAATTCTAC-AAGTCGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGT
45422857 AAAATAGTAATTCTGTA
63 AAAATAGTAATTCTGTA
* * *
45422874 AACTAAGGGTAAAACGGTAATTTTAACAA-TCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGT
1 AA-TCAGGGTAAAACGGTAATTCT-ACAAGTCGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGT
*
45422938 AAAATGGTAATTCTGTA
63 AAAATAGTAATTCTGTA
* ****
45422955 AATCGGGAGTATTTTGGTAATTCTACAAGTCGAGGG
1 AATCAGG-GTAAAACGGTAATTCTACAAGTCGAGGG
45422991 CATTTCAGTA
Statistics
Matches: 173, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
80 7 0.04
81 159 0.92
82 7 0.04
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.27
Consensus pattern (79 bp):
AATCAGGGTAAAACGGTAATTCTACAAGTCGAGGGTAAAACGTAATTCTGTAAATCGAGGGTAAA
ATAGTAATTCTGTA
Found at i:45424978 original size:6 final size:6
Alignment explanation
Indices: 45424967--45425138 Score: 129
Period size: 6 Copynumber: 27.8 Consensus size: 6
45424957 TATCATAACT
* * *
45424967 AGAATC AGAATC AGAATC AG-GTGAC AGAATC AAAATC AGAACC AGAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
* * *
45425016 AGAATT AGGTAAT- AGAATC AGAATC AGTATC AGGTAA-C AAAATC AGAATC
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * * *
45425066 AGAACC AGAATC AGAATT AGGTAAT- AGAATC AGAATC AGTATC AGTATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
45425115 AGGTAA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
45425139 ATGAATGCAA
Statistics
Matches: 135, Mismatches: 16, Indels: 30
0.75 0.09 0.17
Matches are distributed among these distances:
5 11 0.08
6 102 0.76
7 13 0.10
8 9 0.07
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:45425005 original size:31 final size:31
Alignment explanation
Indices: 45424967--45425138 Score: 152
Period size: 31 Copynumber: 5.4 Consensus size: 31
45424957 TATCATAACT
*
45424967 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
45424998 AAAATCAGAACCAGAATCA-G-AATTAGGTAAT-
1 AGAATCAGAATCAGAATCAGGTAA-CA-G-AATC
*
45425029 AGAATCAGAATCAGTATCAGGTAACAAAATCAGAATC
1 AGAATCAGAATCAGAATCAGGT-----AA-CAGAATC
* * *
45425066 AGAACCAGAATCAGAATTAGGTAATAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* *
45425097 AGAATCAGTATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
45425128 AGAATCAGAAT
1 AGAATCAGAAT
45425139 ATGAATGCAA
Statistics
Matches: 112, Mismatches: 18, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
29 1 0.01
30 2 0.02
31 76 0.68
32 6 0.05
36 3 0.03
37 20 0.18
38 4 0.04
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:45425014 original size:37 final size:37
Alignment explanation
Indices: 45424967--45425042 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
45424957 TATCATAACT
* *
45424967 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATC
1 AGAACCAGAATCAGAATCAGGTAACAGAATCAAAATC
* * *
45425004 AGAACCAGAATCAGAATTAGGTAATAGAATCAGAATC
1 AGAACCAGAATCAGAATCAGGTAACAGAATCAAAATC
45425041 AG
1 AG
45425043 TATCAGGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.17
Consensus pattern (37 bp):
AGAACCAGAATCAGAATCAGGTAACAGAATCAAAATC
Found at i:45425036 original size:62 final size:62
Alignment explanation
Indices: 45424966--45425110 Score: 254
Period size: 62 Copynumber: 2.3 Consensus size: 62
45424956 TTATCATAAC
* * *
45424966 TAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
1 TAGAATCAGAATCAGTATCAGGTAACAAAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
*
45425028 TAGAATCAGAATCAGTATCAGGTAACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 TAGAATCAGAATCAGTATCAGGTAACAAAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
45425090 TAGAATCAGAATCAGTATCAG
1 TAGAATCAGAATCAGTATCAG
45425111 TATCAGGTAA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 79 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (62 bp):
TAGAATCAGAATCAGTATCAGGTAACAAAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
Found at i:45425037 original size:25 final size:25
Alignment explanation
Indices: 45425003--45425138 Score: 103
Period size: 25 Copynumber: 5.7 Consensus size: 25
45424993 GAATCAAAAT
* *
45425003 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
45425028 TAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
45425053 CAAAATCAGAATCAGAA-C------
1 CAGAATCAGAATCAGAATCAGGTAA
*
45425071 CAGAATCAGAATTAGGTAAT-A-G-AA
1 CAGAATCAGAATCA-G-AATCAGGTAA
* *
45425095 TCAGAATCAGTATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
45425121 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
45425139 ATGAATGCAA
Statistics
Matches: 86, Mismatches: 14, Indels: 22
0.70 0.11 0.18
Matches are distributed among these distances:
18 12 0.14
19 1 0.01
20 2 0.02
23 2 0.02
24 3 0.03
25 64 0.74
26 2 0.02
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:45425075 original size:37 final size:36
Alignment explanation
Indices: 45425029--45425138 Score: 131
Period size: 37 Copynumber: 3.1 Consensus size: 36
45425019 ATTAGGTAAT
45425029 AGAATCAGAATCAGTATCAGGTAACAAAATCAGAATC
1 AGAATCAGAATCAGTATCAGGTAAC-AAATCAGAATC
* * *
45425066 AGAACCAGAATCAGAATTAGGT----AAT-AGAATC
1 AGAATCAGAATCAGTATCAGGTAACAAATCAGAATC
*
45425097 AGAATCAGTATCAGTATCAGGTAACAGAATCAGAATC
1 AGAATCAGAATCAGTATCAGGTAACA-AATCAGAATC
45425134 AGAAT
1 AGAAT
45425139 ATGAATGCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
31 24 0.40
32 3 0.05
36 3 0.05
37 30 0.50
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (36 bp):
AGAATCAGAATCAGTATCAGGTAACAAATCAGAATC
Found at i:45425125 original size:62 final size:61
Alignment explanation
Indices: 45424966--45425138 Score: 251
Period size: 62 Copynumber: 2.8 Consensus size: 61
45424956 TTATCATAAC
* *
45424966 TAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
1 TAGAATCAGAATCAGTATCAGGT-ACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
*
45425028 TAGAATCAGAATCAGTATCAGGTAACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 TAGAATCAGAATCAGTATCAGGT-ACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
*
45425090 TAGAATCAGAATCAGTATCA-GTATCAGGTAA-CAGAATCAGAATCAGAAT
1 TAGAATCAGAATCAGTATCAGGTA-CA-G-AATCAGAATCAGAACCAGAAT
45425139 ATGAATGCAA
Statistics
Matches: 102, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
60 1 0.01
61 4 0.04
62 95 0.93
63 2 0.02
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.20
Consensus pattern (61 bp):
TAGAATCAGAATCAGTATCAGGTACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
Found at i:45425293 original size:27 final size:26
Alignment explanation
Indices: 45425256--45425320 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
45425246 AGCATGGCTG
*
45425256 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
45425282 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
45425309 CC-GAATCAGATA
1 CCAGAA-CAGATA
45425321 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.03
26 13 0.38
27 20 0.59
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:45425509 original size:27 final size:27
Alignment explanation
Indices: 45425458--45425509 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
45425448 AGTCGTCAAC
*
45425458 AAATATGTTAGGCACATAGCTATAGGT
1 AAATATGTTAGGCACATAGCCATAGGT
*
45425485 AAATATGTTTGGCACGA-AGCCATAG
1 AAATATGTTAGGCAC-ATAGCCATAG
45425510 TCAAGATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (27 bp):
AAATATGTTAGGCACATAGCCATAGGT
Found at i:45425541 original size:22 final size:22
Alignment explanation
Indices: 45425493--45425551 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45425483 GTAAATATGT
*
45425493 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
45425515 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
45425537 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
45425552 TAATAACAGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:45426064 original size:81 final size:82
Alignment explanation
Indices: 45425922--45426108 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 82
45425912 GGCAAAATGG
* * * * * *
45425922 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTAGATAATTCTACCC
45425987 TACAAGGGTATTTC-GA
66 TACAAGGGTATTTCAGA
* * * *
45426003 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTAG-TAATTCTACC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTA-TTTAGATAATTCTACC
* *
45426067 CTATAGGGGTATTTCAGA
65 CTACAAGGGTATTTCAGA
45426085 -AATTTTACCCTACAGGGGTATTTC
1 TAATTTTACCCTACAGGGGTATTTC
45426109 AATAATTTCA
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
81 84 0.93
82 6 0.07
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (82 bp):
TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTAGATAATTCTACCC
TACAAGGGTATTTCAGA
Found at i:45426116 original size:27 final size:27
Alignment explanation
Indices: 45425922--45426115 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
45425912 GGCAAAATGG
* * * * *
45425922 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
45425949 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
45425976 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
45426003 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * *
45426030 TAATTCTATCCTATAAGGGTATTT-TA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
45426056 GTAATTCTACCCTATAGGGGTATTTCAGA
1 -TAATTCTACCCTACAGGGGTATTTC-GA
* *
45426085 -AATTTTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
45426111 TAATT
1 TAATT
45426116 TCACAATCAA
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
29 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:45426150 original size:27 final size:27
Alignment explanation
Indices: 45426120--45426367 Score: 272
Period size: 27 Copynumber: 9.2 Consensus size: 27
45426110 ATAATTTCAC
* *
45426120 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45426147 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45426174 AA-CTGAGGGT-AAACTAGTAATTCTATA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
45426201 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
45426228 AATCGAGGGTAAAATGGTAATTCGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
45426255 AATCGAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45426282 AA-CTGAGGGTAAAACGGTAATT-T-TAA
1 AATC-GAGGGTAAAACGGTAATTCTGT-A
*
45426308 CAATCGAGGGTAAAATGGTAATTCTGTA
1 -AATCGAGGGTAAAACGGTAATTCTGTA
45426336 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45426363 AATCG
1 AATCG
45426368 GGAGTATTTT
Statistics
Matches: 184, Mismatches: 27, Indels: 20
0.80 0.12 0.09
Matches are distributed among these distances:
25 1 0.01
26 8 0.04
27 166 0.90
28 8 0.04
29 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:45426231 original size:81 final size:80
Alignment explanation
Indices: 45426120--45426366 Score: 329
Period size: 81 Copynumber: 3.0 Consensus size: 80
45426110 ATAATTTCAC
* * * *
45426120 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTTTA-AAATCGAGGGTAAAATGGTAATTCTGTAAATC-GAGGGT
*
45426184 -AAACTAGTAATTCTATA
64 AAAAC-AGTAATTCTGTA
*
45426201 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATGGTAATTCGGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTA-AAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTA
* *
45426266 AAACAATAATTTTGTA
65 AAACAGTAATTCTGTA
*
45426282 AA-CTGAGGGTAAAACGGTAATTTTAACAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGT
1 AATC-AAGGGTAAAACGGTAATTTTAA-AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGT
*
45426346 AAAACGGTAATTCTGTA
64 AAAACAGTAATTCTGTA
45426363 AATC
1 AATC
45426367 GGGAGTATTT
Statistics
Matches: 147, Mismatches: 14, Indels: 9
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.01
81 139 0.95
82 6 0.04
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (80 bp):
AATCAAGGGTAAAACGGTAATTTTAAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAA
AACAGTAATTCTGTA
Found at i:45426382 original size:81 final size:80
Alignment explanation
Indices: 45426120--45426398 Score: 307
Period size: 81 Copynumber: 3.4 Consensus size: 80
45426110 ATAATTTCAC
* * * *
45426120 AATCAAGGGTAAAACGGTAATTCTATA-AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGG
1 AATCAGGGGTAAAACGGTAATT-T-TACAATCGAGGGTAAAATGGTAATTCTGTAAATC-GAGGG
*
45426183 T-AAACTAGTAATTCTATA
63 TAAAAC-AGTAATTCTGTA
* *
45426201 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATGGTAATTCGGTAAATCGAGGGTA
1 AATCAGGGGTAAAACGGTAATTTTAC-AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTA
* *
45426266 AAACAATAATTTTGTA
65 AAACAGTAATTCTGTA
*
45426282 AA-CTGAGGGTAAAACGGTAATTTTAACAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGT
1 AATCAG-GGGTAAAACGGTAATTTT-ACAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGT
*
45426346 AAAACGGTAATTCTGTA
64 AAAACAGTAATTCTGTA
****
45426363 AATC-GGGAGTATTTTGGTAATTTTACAAGTCGAGGG
1 AATCAGGG-GTAAAACGGTAATTTTACAA-TCGAGGG
45426399 CATTTCAGTA
Statistics
Matches: 172, Mismatches: 17, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
79 2 0.01
80 8 0.05
81 154 0.90
82 8 0.05
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (80 bp):
AATCAGGGGTAAAACGGTAATTTTACAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAA
AACAGTAATTCTGTA
Found at i:45428390 original size:6 final size:6
Alignment explanation
Indices: 45428379--45428494 Score: 112
Period size: 6 Copynumber: 18.8 Consensus size: 6
45428369 TATCATAACT
* *
45428379 AGAATC AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
45428428 AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC ACGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC
45428478 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
45428495 GTGAATGCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 18
0.76 0.08 0.15
Matches are distributed among these distances:
5 5 0.05
6 74 0.81
7 8 0.09
8 4 0.04
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:45428421 original size:37 final size:37
Alignment explanation
Indices: 45428374--45428485 Score: 145
Period size: 37 Copynumber: 3.0 Consensus size: 37
45428364 AACATTATCA
45428374 TAACTAGAATCAGAATCAGAATCAGAATCAGAATCAGG
1 TAAC-AGAATCAGAATCAGAATCAGAATCAGAATCAGG
* * * *
45428412 TGACAGAATCAAAATCAGAACCAGAATCAGAATTAGG
1 TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
*
45428449 TAACAGAATCAGAATCAGTATCACGTAA-CAGAATCAG
1 TAACAGAATCAGAATCAGAATCA-G-AATCAGAATCAG
45428486 AATCAGAATG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
37 49 0.78
38 12 0.19
39 2 0.03
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (37 bp):
TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
Found at i:45428422 original size:31 final size:31
Alignment explanation
Indices: 45428384--45428494 Score: 120
Period size: 31 Copynumber: 3.6 Consensus size: 31
45428374 TAACTAGAAT
*
45428384 CAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
45428415 CAGAATCAAAATCAGAACCAGAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* * *
45428444 TTAGGTAA-CAGAATCAGAATCAGTATCACGTAA
1 -CA-G-AATCAGAATCAGAATCAGAATCAGGTAA
45428477 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
45428495 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
29 1 0.02
30 4 0.06
31 55 0.83
32 4 0.06
33 2 0.03
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:45428455 original size:25 final size:25
Alignment explanation
Indices: 45428427--45428494 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
45428417 GAATCAAAAT
* * *
45428427 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCACGTAA
*
45428452 CAGAATCAGAATCAGTATCACGTAA
1 CAGAATCAGAATCAGAATCACGTAA
45428477 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
45428495 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCACGTAA
Found at i:45428649 original size:27 final size:26
Alignment explanation
Indices: 45428612--45428677 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
45428602 AGCATGGCTG
* *
45428612 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCATGACAGAGCCA
* *
45428638 CCAGATACAGATATTATGGCAGAGCCA
1 CCAGA-ACAGATATCATGACAGAGCCA
45428665 CCAGAATCAGATA
1 CCAGAA-CAGATA
45428678 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCATGACAGAGCCA
Found at i:45428684 original size:27 final size:27
Alignment explanation
Indices: 45428612--45428685 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
45428602 AGCATGGCTG
* *
45428612 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
* *
45428638 CCAG-ATACAGATATTATGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
45428665 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
45428686 AACCCACCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.11
27 30 0.79
28 3 0.08
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:45428692 original size:27 final size:27
Alignment explanation
Indices: 45428636--45428693 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
45428626 GTGACAGAGT
* * *
45428636 CACCAGATACAGATATTATGGCAGAGC
1 CACCAGATACAGATAATATGGCAAACC
*
45428663 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATATGGCAAACC
45428690 CACC
1 CACC
45428694 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATATGGCAAACC
Found at i:45429075 original size:27 final size:26
Alignment explanation
Indices: 45428996--45429078 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
45428986 TCGATTGGTC
* * *
45428996 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
45429022 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
45429049 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
45429076 AAC
1 AAC
45429079 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Done.