Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 137 of 344
Found at i:46097673 original size:43 final size:42
Alignment explanation
Indices: 46097625--46097775 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 42
46097615 TGTAACTACA
* *
46097625 TGTAAGACCATGTCTGGGACATTGGCATTGTCTTGTGATTATG
1 TGTAAGACCATGTCTGGGACATTGACATCGT-TTGTGATTATG
*
46097668 TGTAAGACCATGTCTGGGACATTGACATCGTATTATGATT-TCG
1 TGTAAGACCATGTCTGGGACATTGACATCGT-TTGTGATTAT-G
* * * * * **
46097711 TGTAAGACCTTGTCTGGGACAGTGACATCGATATGTGGTAACA
1 TGTAAGACCATGTCTGGGACATTGACATCG-TTTGTGATTATG
*
46097754 TGTAAGACCATATCTGGGACAT
1 TGTAAGACCATGTCTGGGACAT
46097776 GGCATTGTAA
Statistics
Matches: 90, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 88 0.98
44 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGACATCGTTTGTGATTATG
Found at i:46099639 original size:28 final size:28
Alignment explanation
Indices: 46099607--46099673 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
46099597 AATGAGATTG
*
46099607 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
46099635 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
46099663 GCACTAAGTGT
1 GCACTAAGTGT
46099674 ACGGACTTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 34 0.94
29 2 0.06
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:46104502 original size:28 final size:28
Alignment explanation
Indices: 46104470--46104624 Score: 141
Period size: 28 Copynumber: 5.5 Consensus size: 28
46104460 TGACATCTAT
*
46104470 AGAGATAGTTCACTGGGACAGTAAACAC
1 AGAGATAGTTCACTGGGACAATAAACAC
** * * * *
46104498 AGAGATAGCCCGCGGGGATAATAAACAT
1 AGAGATAGTTCACTGGGACAATAAACAC
* * *
46104526 AGAGATAG-TCTACTGGGACAGTAAATAT
1 AGAGATAGTTC-ACTGGGACAATAAACAC
* *
46104554 AGAGATAGTCCGCTGGGACAATAAACAC
1 AGAGATAGTTCACTGGGACAATAAACAC
* *
46104582 AAAGATAGTTCACTGGGACAATACAAAAC
1 AGAGATAGTTCACTGGGACAATA-AACAC
* *
46104611 ATAGATAATTCACT
1 AGAGATAGTTCACT
46104625 AGAATAATAA
Statistics
Matches: 100, Mismatches: 24, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
27 1 0.01
28 82 0.82
29 17 0.17
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (28 bp):
AGAGATAGTTCACTGGGACAATAAACAC
Found at i:46104541 original size:56 final size:56
Alignment explanation
Indices: 46104468--46104601 Score: 189
Period size: 56 Copynumber: 2.4 Consensus size: 56
46104458 CATGACATCT
*
46104468 ATAGAGATAGTTCACTGGGACAGTAAACACAGAGATAGCCCGCGGGGATAATAAAC
1 ATAGAGATAGTTCACTGGGACAGTAAACACAGAGATAGCCCGCGGGGACAATAAAC
* * * *
46104524 ATAGAGATAG-TCTACTGGGACAGTAAATATAGAGATAGTCCGCTGGGACAATAAAC
1 ATAGAGATAGTTC-ACTGGGACAGTAAACACAGAGATAGCCCGCGGGGACAATAAAC
* *
46104580 ACAAAGATAGTTCACTGGGACA
1 ATAGAGATAGTTCACTGGGACA
46104602 ATACAAAACA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
55 2 0.03
56 65 0.94
57 2 0.03
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.19
Consensus pattern (56 bp):
ATAGAGATAGTTCACTGGGACAGTAAACACAGAGATAGCCCGCGGGGACAATAAAC
Found at i:46104624 original size:29 final size:28
Alignment explanation
Indices: 46104566--46104642 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 28
46104556 AGATAGTCCG
* *
46104566 CTGGGACAATAAACACAAAGATAGTTCA
1 CTGGGACAATAAAAACAAAGATAATTCA
*
46104594 CTGGGACAATACAAAACATAGATAATTCA
1 CTGGGACAATA-AAAACAAAGATAATTCA
* * *
46104623 CTAGAATAATAAAACACAAA
1 CTGGGACAATAAAA-ACAAA
46104643 ATATATAAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
28 14 0.35
29 26 0.65
ACGTcount: A:0.52, C:0.17, G:0.13, T:0.18
Consensus pattern (28 bp):
CTGGGACAATAAAAACAAAGATAATTCA
Found at i:46109563 original size:27 final size:27
Alignment explanation
Indices: 46109533--46109710 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
46109523 ATATTGAGTC
* *
46109533 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
46109560 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
46109587 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
46109615 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
46109642 TGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
46109669 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
46109696 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46109711 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46112977 original size:80 final size:79
Alignment explanation
Indices: 46112893--46113064 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
46112883 GGACTAAGAT
*
46112893 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
46112957 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
46112973 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
46113038 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
46113052 CCGAAGGCATTTG
1 CCGAAGGCATTTG
46113065 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:46113044 original size:39 final size:39
Alignment explanation
Indices: 46112840--46113062 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
46112830 TTGAATGCTG
* * * * *
46112840 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
46112880 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
46112919 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
46112960 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
46113000 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
46113039 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
46113063 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:46113082 original size:79 final size:80
Alignment explanation
Indices: 46112920--46113087 Score: 180
Period size: 79 Copynumber: 2.1 Consensus size: 80
46112910 AGATACAAAT
* * *
46112920 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
46112985 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * * *
46113000 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
46113064 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
46113079 TCC-GGTTAA
1 TCCGGGTTAA
46113088 ATCTCGAAGG
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
78 6 0.08
79 48 0.67
80 18 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:46127456 original size:20 final size:20
Alignment explanation
Indices: 46127433--46127479 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
46127423 AAACTCAAAC
46127433 GAGCTGAATTGAGCTCAAGT
1 GAGCTGAATTGAGCTCAAGT
*
46127453 GAGCTAAATTGAGCTCAAGT
1 GAGCTGAATTGAGCTCAAGT
46127473 GAGCTGA
1 GAGCTGA
46127480 TGGGAGCTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (20 bp):
GAGCTGAATTGAGCTCAAGT
Found at i:46129808 original size:19 final size:20
Alignment explanation
Indices: 46129784--46129824 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
46129774 TTGTTCACTT
46129784 TCTTTTCTTTGTTT-TTCTC
1 TCTTTTCTTTGTTTCTTCTC
46129803 TCTTTTCTTTGTTTCTTCTC
1 TCTTTTCTTTGTTTCTTCTC
46129823 TC
1 TC
46129825 GATTTCATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (20 bp):
TCTTTTCTTTGTTTCTTCTC
Found at i:46132290 original size:21 final size:20
Alignment explanation
Indices: 46132264--46132306 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
46132254 GAATAAGCTG
46132264 AAACGAGCTAAATTCGAACTC
1 AAACGAGCTAAATT-GAACTC
* *
46132285 AAACGAGCTGAATTGAGCTC
1 AAACGAGCTAAATTGAACTC
46132305 AA
1 AA
46132307 GTGAGCTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.19
Consensus pattern (20 bp):
AAACGAGCTAAATTGAACTC
Found at i:46132657 original size:42 final size:43
Alignment explanation
Indices: 46132596--46132713 Score: 125
Period size: 42 Copynumber: 2.8 Consensus size: 43
46132586 CGATTGAGAT
* *
46132596 TTACATATAAGACCATGTCTGGGACATCGGCATCG-TATCTG-A
1 TTACATGTAAGACCCTGTCTGGGACATCGGCATCGATAT-TGAA
* * * **
46132638 TTTCGTGTAAGACCCTGTCTAGGACAGAGGCATCGATATTGAA
1 TTACATGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAA
*
46132681 TTACATGTAAGAGCAC-GTCTGGGACATCGGCAT
1 TTACATGTAAGA-CCCTGTCTGGGACATCGGCAT
46132714 TGTACTTGTT
Statistics
Matches: 60, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
42 30 0.50
43 28 0.47
44 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAA
Found at i:46132713 original size:43 final size:41
Alignment explanation
Indices: 46132596--46132713 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 41
46132586 CGATTGAGAT
* *
46132596 TTACATATAAGACCATGTCTGGGACATCGGCATCGTATCTGA
1 TTACATGTAAGA-CACGTCTGGGACATCGGCATCGTATCTGA
* * * * **
46132638 TTTCGTGTAAGACCCTGTCTAGGACAGAGGCATCGATAT-TGAA
1 TTACATGTAAGACAC-GTCTGGGACATCGGCATCG-TATCTG-A
46132681 TTACATGTAAGAGCACGTCTGGGACATCGGCAT
1 TTACATGTAAGA-CACGTCTGGGACATCGGCAT
46132714 TGTACTTGTT
Statistics
Matches: 58, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.02
42 27 0.47
43 28 0.48
44 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (41 bp):
TTACATGTAAGACACGTCTGGGACATCGGCATCGTATCTGA
Found at i:46133743 original size:41 final size:41
Alignment explanation
Indices: 46133691--46133784 Score: 134
Period size: 41 Copynumber: 2.3 Consensus size: 41
46133681 TTAAATGTTT
* * *
46133691 GACCGTGGATCCACCGATTGAGGATCGCATGGTTGCTTGAC
1 GACCGTGGATCCACCAATTAAGGATCGCATGGTTACTTGAC
* *
46133732 GACCGTGGATCCACCAATTAAGGATCGCATGGTTACTTTAT
1 GACCGTGGATCCACCAATTAAGGATCGCATGGTTACTTGAC
*
46133773 TACCGTGGATCC
1 GACCGTGGATCC
46133785 GCCGGTGGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (41 bp):
GACCGTGGATCCACCAATTAAGGATCGCATGGTTACTTGAC
Found at i:46134544 original size:41 final size:41
Alignment explanation
Indices: 46134499--46134618 Score: 177
Period size: 41 Copynumber: 2.9 Consensus size: 41
46134489 GGCCACCGGC
** * *
46134499 GGATCCACGGTAATAAAGTAACCATGCGATCCTTAATTGGT
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATTGGT
* * *
46134540 GGATCCACTGTCGTCAAGCAACCATGCGATCCTCAATCGGT
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATTGGT
46134581 GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATT
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATT
46134619 TCTTCCTCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATTGGT
Found at i:46134904 original size:27 final size:27
Alignment explanation
Indices: 46134874--46134926 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
46134864 GGTAAATCTA
46134874 CAAACCAAAGGTATTTCGATAATTTTG
1 CAAACCAAAGGTATTTCGATAATTTTG
* *
46134901 CAAACCAATGGTATTTCTATAATTTT
1 CAAACCAAAGGTATTTCGATAATTTT
46134927 TTGAAAGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (27 bp):
CAAACCAAAGGTATTTCGATAATTTTG
Found at i:46134968 original size:27 final size:27
Alignment explanation
Indices: 46134883--46135117 Score: 193
Period size: 27 Copynumber: 8.6 Consensus size: 27
46134873 ACAAACCAAA
* ** ** *
46134883 GGTATTTCGATAATTTTGCAAACCAAT
1 GGTATTTCGGTAATTTTATAAATTAAG
** *
46134910 GGTATTTCTATAATTTTTTGAAAGTTAAG
1 GGTATTTCGGTAATTTTAT-AAA-TTAAG
** * *
46134939 GGTATTTTTGTAATTTTGTAAATTAGG
1 GGTATTTCGGTAATTTTATAAATTAAG
** ** *
46134966 GGTATTTCTTTAATTTTCCAAATTAGG
1 GGTATTTCGGTAATTTTATAAATTAAG
*
46134993 GGTATTTTGGTAATTTTATAAATTAAG
1 GGTATTTCGGTAATTTTATAAATTAAG
*
46135020 GGTATTTCGGTAATTTT-TCAAGTTAAG
1 GGTATTTCGGTAATTTTAT-AAATTAAG
* ** *
46135047 GGTATTTCAGTAATTTTATATGTCAAG
1 GGTATTTCGGTAATTTTATAAATTAAG
* *
46135074 GGTATTTCGGTAATTTTACAAATTAGG
1 GGTATTTCGGTAATTTTATAAATTAAG
*
46135101 GGTATTTTGGTAATTTT
1 GGTATTTCGGTAATTTT
46135118 GCTATATGCA
Statistics
Matches: 172, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 146 0.85
28 7 0.04
29 18 0.10
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTATAAATTAAG
Found at i:46135015 original size:54 final size:54
Alignment explanation
Indices: 46134910--46135117 Score: 236
Period size: 54 Copynumber: 3.8 Consensus size: 54
46134900 GCAAACCAAT
** * * * *
46134910 GGTATTTCTATAATTTTTTGAAAGTTAAGGGTATTTTTGTAATTTTGTAAATTAGG
1 GGTATTTCGGTAA-TTTTTCAAA-TTAAGGGTATTTTGGTAATTTTATAAATTAAG
** * *
46134966 GGTATTTCTTTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTATAAATTAAG
1 GGTATTTCGGTAATTTTTCAAATTAAGGGTATTTTGGTAATTTTATAAATTAAG
* ** ** *
46135020 GGTATTTCGGTAATTTTTCAAGTTAAGGGTATTTCAGTAATTTTATATGTCAAG
1 GGTATTTCGGTAATTTTTCAAATTAAGGGTATTTTGGTAATTTTATAAATTAAG
* *
46135074 GGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTT
1 GGTATTTCGGTAATTTTTCAAATTAAGGGTATTTTGGTAATTTT
46135118 GCTATATGCA
Statistics
Matches: 130, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
54 111 0.85
55 7 0.05
56 12 0.09
ACGTcount: A:0.28, C:0.05, G:0.20, T:0.48
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTTCAAATTAAGGGTATTTTGGTAATTTTATAAATTAAG
Found at i:46135054 original size:81 final size:81
Alignment explanation
Indices: 46134910--46135118 Score: 226
Period size: 81 Copynumber: 2.6 Consensus size: 81
46134900 GCAAACCAAT
** * * * *
46134910 GGTATTTCTATAATTTTTTGAAAGTTAAGGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTCT
1 GGTATTTCGGTAATTTTAT-AAA-TTAAGGGTATTTTGGTAATTTTGTAAATTAAGGGTATTTCA
* *
46134975 TTAATTTTCCAAAT-T-AGG
64 GTAATTTT--AAATGTCAAG
* * *
46134993 GGTATTTTGGTAATTTTATAAATTAAGGGTATTTCGGTAATTTT-TCAAGTTAAGGGTATTTCAG
1 GGTATTTCGGTAATTTTATAAATTAAGGGTATTTTGGTAATTTTGT-AAATTAAGGGTATTTCAG
*
46135057 TAATTTTATATGTCAAG
65 TAATTTTAAATGTCAAG
* *
46135074 GGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTG
1 GGTATTTCGGTAATTTTATAAATTAAGGGTATTTTGGTAATTTTG
46135119 CTATATGCAT
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
79 3 0.03
80 2 0.02
81 83 0.78
82 3 0.03
83 15 0.14
ACGTcount: A:0.28, C:0.05, G:0.20, T:0.47
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTATAAATTAAGGGTATTTTGGTAATTTTGTAAATTAAGGGTATTTCAGT
AATTTTAAATGTCAAG
Found at i:46135133 original size:81 final size:81
Alignment explanation
Indices: 46134883--46135162 Score: 188
Period size: 81 Copynumber: 3.4 Consensus size: 81
46134873 ACAAACCAAA
** * ** ** *
46134883 GGTATTTC-GATAATTTTGCAAACCAATGGTATTTCTATAATTTTTTGAAAGTTAAGGGTATTTT
1 GGTATTTCAG-TAATTTTATAAACCAAGGGTATTTCGGTAA-TTTTACAAA-TTAAGGGTATTTC
* * * * *
46134947 TGTAATTTTGTAAATTAGG
63 GGTAATTTTGCAAGTGAAG
** ** ** * * *
46134966 GGTATTTCTTTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTATAAATTAAGGGTATTTCGGT
1 GGTATTTCAGTAATTTTATAAACCAAGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTCGGT
* *
46135031 AATTTTTCAAGTTAAG
66 AATTTTGCAAGTGAAG
*** * *
46135047 GGTATTTCAGTAATTTTATATGTCAAGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGT
1 GGTATTTCAGTAATTTTATAAACCAAGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTCGGT
*
46135112 AATTTTGCTATA-TGCA-
66 AATTTTGC-A-AGTGAAG
* ** *
46135128 TGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC
1 GGTATTTCAGTAATTTTATAAACCAAGGGTATTTC
46135163 AATAATTCTA
Statistics
Matches: 155, Mismatches: 39, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
81 114 0.74
82 10 0.06
83 31 0.20
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTATAAACCAAGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTCGGT
AATTTTGCAAGTGAAG
Found at i:46135159 original size:27 final size:27
Alignment explanation
Indices: 46134925--46135161 Score: 185
Period size: 27 Copynumber: 8.8 Consensus size: 27
46134915 TTCTATAATT
*
46134925 TTTTG-AAAGTTAAGGGTATTTTTGTAA
1 TTTTGTAAA-TTAAGGGTATTTTGGTAA
* *
46134952 TTTTGTAAATTAGGGGTATTTCT-TTAA
1 TTTTGTAAATTAAGGGTATTT-TGGTAA
** *
46134979 TTTTCCAAATTAGGGGTATTTTGGTAA
1 TTTTGTAAATTAAGGGTATTTTGGTAA
* *
46135006 TTTTATAAATTAAGGGTATTTCGGTAA
1 TTTTGTAAATTAAGGGTATTTTGGTAA
* **
46135033 TTTT-TCAAGTTAAGGGTATTTCAGTAA
1 TTTTGT-AAATTAAGGGTATTTTGGTAA
* ** * *
46135060 TTTTATATGTCAAGGGTATTTCGGTAA
1 TTTTGTAAATTAAGGGTATTTTGGTAA
** *
46135087 TTTTACAAATTAGGGGTATTTTGGTAA
1 TTTTGTAAATTAAGGGTATTTTGGTAA
* ** *
46135114 TTTTGCTATATGCA-TGTATTTTGGTAA
1 TTTTG-TAAATTAAGGGTATTTTGGTAA
**
46135141 TTTTGTAAACCAAGGGTATTT
1 TTTTGTAAATTAAGGGTATTT
46135162 CAATAATTCT
Statistics
Matches: 171, Mismatches: 32, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.04
27 157 0.92
28 8 0.05
ACGTcount: A:0.28, C:0.05, G:0.20, T:0.46
Consensus pattern (27 bp):
TTTTGTAAATTAAGGGTATTTTGGTAA
Found at i:46141076 original size:56 final size:55
Alignment explanation
Indices: 46140959--46141078 Score: 204
Period size: 55 Copynumber: 2.2 Consensus size: 55
46140949 CATATATTGT
* *
46140959 ATATATCAAAATTACATATCGATGCCAACGTATTAAAGTGGTCTTACTCGCACAC
1 ATATATCGAAATCACATATCGATGCCAACGTATTAAAGTGGTCTTACTCGCACAC
*
46141014 ATATATCGAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACTC
1 ATATATCGAAATCACATATCGATGCCAACGTATTAAA-GTGGTCTTACTCGCACAC
46141070 ATATATCGA
1 ATATATCGA
46141079 TGCCATGGTC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
55 35 0.57
56 26 0.43
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (55 bp):
ATATATCGAAATCACATATCGATGCCAACGTATTAAAGTGGTCTTACTCGCACAC
Found at i:46145238 original size:25 final size:25
Alignment explanation
Indices: 46145210--46145372 Score: 227
Period size: 25 Copynumber: 6.5 Consensus size: 25
46145200 AAAGCTTGAT
*
46145210 AATTTGCTCTTAATAATTCTGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
46145235 AATTTGTTCTTAATAATTCCAGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
46145260 AATTTGCTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
46145285 AATTTGCTCTTAATATTTCCGGTAA
1 AATTTGCTCTTAATAATTCCGGTTA
*
46145310 AATTTGCTCTTAATAATTTCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* **
46145335 AATTTTGCTCTTAATATTTCTAGTTA
1 AA-TTTGCTCTTAATAATTCCGGTTA
*
46145361 AATTTGCCCTTA
1 AATTTGCTCTTA
46145373 TTATTTTTGA
Statistics
Matches: 122, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
25 101 0.83
26 21 0.17
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.47
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGGTTA
Found at i:46146276 original size:45 final size:45
Alignment explanation
Indices: 46146204--46146380 Score: 259
Period size: 45 Copynumber: 4.0 Consensus size: 45
46146194 TATCGTACAG
46146204 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
46146249 TATTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
46146294 TGCTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* *
46146339 TACTATTCGGG-CTTTCGAGCCTAGCAGGCGA-AATGTCGGTGA
1 TACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
46146381 ATGAATTCTG
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
44 14 0.12
45 104 0.88
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:46151484 original size:38 final size:38
Alignment explanation
Indices: 46151412--46151581 Score: 216
Period size: 38 Copynumber: 4.4 Consensus size: 38
46151402 GAATCCAGTC
* * * *
46151412 ACCAGCACAAAACCTACGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCGAATATAAT
*
46151452 ACCAACACTAAGCCTGCGGGATTTAACCCGAATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGAATATAAT
* *
46151490 ACTAGCA-TGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACT-AAGCCTGCGGGATTTAACCCGAATATAAT
* *
46151528 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGAATATAAT
*
46151566 ACCAGCACAAAGCCTG
1 ACCAGCACTAAGCCTG
46151582 TGGATCTTTA
Statistics
Matches: 117, Mismatches: 11, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
37 1 0.01
38 94 0.80
39 5 0.04
40 17 0.15
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCGAATATAAT
Found at i:46156347 original size:79 final size:78
Alignment explanation
Indices: 46156245--46156467 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
46156235 GCTCCTCGTT
* *
46156245 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
46156310 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
46156325 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
46156388 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * * *
46156403 CAAATGCCTTCGGATCTTAGTCTGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
46156466 GA
63 GA
46156468 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 47 0.38
79 56 0.45
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:46156362 original size:39 final size:40
Alignment explanation
Indices: 46156245--46156467 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
46156235 GCTCCTCGTT
* *
46156245 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
46156285 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
46156325 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
46156364 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
46156403 CAAATGCCTTC-GGATCTTAGTCTGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
46156444 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46156468 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:46164745 original size:18 final size:19
Alignment explanation
Indices: 46164724--46164761 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
46164714 AAATTGAAAC
*
46164724 AAAAT-TGAAAATTTTGGA
1 AAAATATGAAAATTTAGGA
46164742 AAAATATGAAAATTTAGGA
1 AAAATATGAAAATTTAGGA
46164761 A
1 A
46164762 GCAAGGGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (19 bp):
AAAATATGAAAATTTAGGA
Found at i:46165904 original size:41 final size:41
Alignment explanation
Indices: 46165847--46166019 Score: 265
Period size: 41 Copynumber: 4.2 Consensus size: 41
46165837 AAATACATCA
* *
46165847 TTTTCATTTGTTATCCTTTTTGGATAAAATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTTGGATAACATCCTTTTCAACC
*
46165888 TTTTCATTTGATATCCTTTTCGGATAACATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTTGGATAACATCCTTTTCAACC
* * *
46165929 TTTTTTATTTTATATCATTTTTGGATAACATCCTTTTCAACC
1 -TTTTCATTTGATATCCTTTTTGGATAACATCCTTTTCAACC
* *
46165971 TTTTCATTTTATATCCATTTTGGATAACATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTTGGATAACATCCTTTTCAACC
46166012 TTTTCATT
1 TTTTCATT
46166020 GATTCAAAAA
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
41 84 0.69
42 37 0.31
ACGTcount: A:0.23, C:0.20, G:0.06, T:0.51
Consensus pattern (41 bp):
TTTTCATTTGATATCCTTTTTGGATAACATCCTTTTCAACC
Found at i:46165972 original size:83 final size:83
Alignment explanation
Indices: 46165858--46166015 Score: 273
Period size: 83 Copynumber: 1.9 Consensus size: 83
46165848 TTTCATTTGT
*
46165858 TATCCTTTTTGGATAAAATCCTTTTCAACCTTTTCATTTGATATCC-TTTTCGGATAACATCCTT
1 TATCATTTTTGGATAAAATCCTTTTCAACCTTTTCATTTGATATCCATTTT-GGATAACATCCTT
46165922 TTCAACCTTTTTTATTTTA
65 TTCAACCTTTTTTATTTTA
* *
46165941 TATCATTTTTGGATAACATCCTTTTCAACCTTTTCATTTTATATCCATTTTGGATAACATCCTTT
1 TATCATTTTTGGATAAAATCCTTTTCAACCTTTTCATTTGATATCCATTTTGGATAACATCCTTT
46166006 TCAACCTTTT
66 TCAACCTTTT
46166016 CATTGATTCA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
83 67 0.94
84 4 0.06
ACGTcount: A:0.23, C:0.21, G:0.06, T:0.50
Consensus pattern (83 bp):
TATCATTTTTGGATAAAATCCTTTTCAACCTTTTCATTTGATATCCATTTTGGATAACATCCTTT
TCAACCTTTTTTATTTTA
Found at i:46167725 original size:27 final size:27
Alignment explanation
Indices: 46167388--46167718 Score: 437
Period size: 27 Copynumber: 12.3 Consensus size: 27
46167378 TTAGTTTACC
*
46167388 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
46167415 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
46167442 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
46167469 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
46167496 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
46167523 AAATTACCAAAATACCCTTGGTTTAAA
1 AAATTACCAAAATACCCCTGGTTTGTA
46167550 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
46167577 AAATTACTAAAATATCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
46167604 AAATTACCAAAATAACCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
46167631 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
46167658 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
46167685 GAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
46167712 AAATTAC
1 AAATTAC
46167719 TGAAATATCC
Statistics
Matches: 260, Mismatches: 44, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 260 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:46167725 original size:54 final size:54
Alignment explanation
Indices: 46167388--46167701 Score: 493
Period size: 54 Copynumber: 5.8 Consensus size: 54
46167378 TTAGTTTACC
* *
46167388 AAATTACCAAAATACCTCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
46167442 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
46167496 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
46167550 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATATCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
46167604 AAATTACCAAAATAACCCTAGTTTGTAAAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
46167658 AAATTATCAAAATACCCTTAGTTTGTAGAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
46167702 CTGATTTGTG
Statistics
Matches: 239, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:46167742 original size:81 final size:80
Alignment explanation
Indices: 46167388--46167789 Score: 410
Period size: 81 Copynumber: 5.0 Consensus size: 80
46167378 TTAGTTTACC
* **
46167388 AAATTACCAAAATACCTCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCTC-GGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
*
46167453 ATACCCCTGGTTTGTA
65 ATACCCCTGATTTGTA
* * * *
46167469 AAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATA-CCTCGGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
* * **
46167534 ATACCCTTGGTTTAAA
65 ATACCCCTGATTTGTA
* * * * *
46167550 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATATCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCTC-GGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
*
46167615 ATAACCCT-AGTTTGTA
65 ATACCCCTGA-TTTGTA
* * * * *
46167631 AAATTACCAAAATACCATTGGTTTGTAAAATTATCAAAATACCCTTAGTTTGTAGAATTACCAAA
1 AAATTACCAAAATACC-TCGGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
*
46167696 ATACCCCTGATTTGTG
65 ATACCCCTGATTTGTA
** *** * *** * **
46167712 AAATTACTGAAATATCCTCGACCTACAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAA
1 AAATTACCAAAATA-CCTCGGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
*
46167777 GTACCCCTGATTT
65 ATACCCCTGATTT
46167790 ACAGAATTAC
Statistics
Matches: 265, Mismatches: 50, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.01
81 257 0.97
82 6 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
AAATTACCAAAATACCTCGGTTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
TACCCCTGATTTGTA
Found at i:46167768 original size:27 final size:27
Alignment explanation
Indices: 46167680--46167772 Score: 80
Period size: 27 Copynumber: 3.4 Consensus size: 27
46167670 TACCCTTAGT
* ** *
46167680 TTGTAGAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACTGAAATACCCTC-GAC
* *
46167707 TTGTGAAATTACTGAAATATCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
* ** *
46167734 CTACAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
46167761 TTGTAAAATTAC
1 TTGTAAAATTAC
46167773 CAAAGTACCC
Statistics
Matches: 49, Mismatches: 16, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:46167797 original size:27 final size:27
Alignment explanation
Indices: 46167751--46167827 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
46167741 ATTATTGAAA
* **
46167751 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCAAAG
* ***
46167778 TACCC-CTGATTTACAGAATTACCATTT
1 TACCCTC-GATTTACAAAATTACCAAAG
46167805 TACCCTCGATTTACAAAATTACC
1 TACCCTCGATTTACAAAATTACC
46167828 GAGACACCCT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAG
Found at i:46167942 original size:81 final size:81
Alignment explanation
Indices: 46167821--46168339 Score: 587
Period size: 81 Copynumber: 6.4 Consensus size: 81
46167811 CGATTTACAA
* * * * * *
46167821 AATTACCGAGACA-CCCTGTAAGGTAGAATTAGCGAAATACCCCTGTATGGTAGAATTATTAAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAA
46167885 TACCCCTGTAAGGTAG
66 TACCCCTGTAAGGTAG
** * ** *
46167901 AATTACAAAAATATCCCTGTAGGGTAGAATTACCGAAATACCATTGTAGGGTAAAATTATTGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAA
46167966 TACCCCTGTAAGGTAG
66 TACCCCTGTAAGGTAG
* * * * * * *
46167982 AATTACCGAAATACCCCTGTATGTTAGAATTATCGAAAAACCCCTGTAGGGTATAATTACTAAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAA
*
46168047 TACCCCTATAAGGTAG
66 TACCCCTGTAAGGTAG
* * * * * * *
46168063 AATTACCGAAATACCCTTATAGGGTATAATTACTGAAATACCCCTATAAGGTAGAATTATCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAA
* *
46168128 TACCCTTGTAGGGTAG
66 TACCCCTGTAAGGTAG
* * * ** *
46168144 AATTACTGAAATACCCCTGTAAGGTAAAATTACTAAAATACCACC-GTAGGGTAGAATTATCGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACC-CCTGTAGGGTAGAATTATTGAA
*
46168208 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAAGGTAG
* * * * *
46168225 AATTACCGAAATACCCCT-TCAGGGTAGAATTACCGAAATACCCTTGTAGGTTAGAAATACTGAT
1 AATTACCGAAATACCCCTGT-AGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAA
*
46168289 TTACCCCTGTAAGGTAG
65 ATACCCCTGTAAGGTAG
* *
46168306 AATTACCGAGATACCCTCT-TAGGGTAAAATTACC
1 AATTACCGAAATACCC-CTGTAGGGTAGAATTACC
46168340 ATTTTGCCCC
Statistics
Matches: 369, Mismatches: 65, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
80 11 0.03
81 353 0.96
82 5 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAA
TACCCCTGTAAGGTAG
Found at i:46168339 original size:27 final size:27
Alignment explanation
Indices: 46167821--46168339 Score: 533
Period size: 27 Copynumber: 19.3 Consensus size: 27
46167811 CGATTTACAA
* * *
46167821 AATTACCGAGACA-CCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
46167847 AATTAGCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** *
46167874 AATTATTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
46167901 AATTACAAAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
46167928 AATTACCGAAATACCATTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
46167955 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
46167982 AATTACCGAAATACCCCTGTATGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
46168009 AATTATCGAAAAACCCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
46168036 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
46168063 AATTACCGAAATACCCTTATAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
46168090 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
46168117 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
46168144 AATTACTGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
**
46168171 AATTACTAAAATACCACC-GTAGGGTAG
1 AATTACCGAAATACC-CCTGTAGGGTAG
*
46168198 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
46168225 AATTACCGAAATACCCCT-TCAGGGTAG
1 AATTACCGAAATACCCCTGT-AGGGTAG
* *
46168252 AATTACCGAAATACCCTTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
46168279 AAATACTGATTTACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
46168306 AATTACCGAGATACCCTCT-TAGGGTAA
1 AATTACCGAAATACCC-CTGTAGGGTAG
46168333 AATTACC
1 AATTACC
46168340 ATTTTGCCCC
Statistics
Matches: 406, Mismatches: 81, Indels: 11
0.82 0.16 0.02
Matches are distributed among these distances:
26 13 0.03
27 388 0.96
28 5 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:46168701 original size:22 final size:22
Alignment explanation
Indices: 46168676--46168725 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
46168666 GATGGCTCTA
46168676 TGCCAACCTAAATATGGCTTCG
1 TGCCAACCTAAATATGGCTTCG
* * * *
46168698 TGCCATCTTGACTATGGCTTCG
1 TGCCAACCTAAATATGGCTTCG
46168720 TGCCAA
1 TGCCAA
46168726 ACGTATTTAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (22 bp):
TGCCAACCTAAATATGGCTTCG
Found at i:46168912 original size:27 final size:26
Alignment explanation
Indices: 46168882--46168963 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 26
46168872 ATTCTGTTAA
* *
46168882 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
46168909 GTGGCTATGCCACAAATATCTGTATCTG
1 GTGGCTATGCCAC-AATATCTGT-TCTG
* * *
46168937 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
46168963 G
1 G
46168964 CAGCAATGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 5 0.10
27 22 0.46
28 21 0.44
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:46169113 original size:31 final size:31
Alignment explanation
Indices: 46169078--46169156 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
46169068 TCGCATTCAC
* *
46169078 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* *
46169109 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
46169140 ACTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
46169157 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:46169117 original size:6 final size:6
Alignment explanation
Indices: 46169078--46169165 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
46169068 TCGCATTCAC
* * *
46169078 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
46169127 -TCACCTG ATTCTG ACTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
46169166 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:46171138 original size:27 final size:27
Alignment explanation
Indices: 46171108--46171437 Score: 437
Period size: 27 Copynumber: 12.3 Consensus size: 27
46171098 TTAGTTTACC
46171108 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
46171135 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
46171162 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
46171189 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
46171216 AAATCACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
46171243 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
46171270 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
46171297 AAATTACTAAAAT-CCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
46171323 AAATTACCAAAATGCCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
46171350 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
46171377 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
46171404 GAATTACCAAACTACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
46171431 AAATTAC
1 AAATTAC
46171438 TGAAATATCC
Statistics
Matches: 259, Mismatches: 43, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.09
27 236 0.91
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:46171444 original size:54 final size:54
Alignment explanation
Indices: 46171108--46171437 Score: 509
Period size: 54 Copynumber: 6.1 Consensus size: 54
46171098 TTAGTTTACC
46171108 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
46171162 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
46171216 AAATCACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
46171270 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAAT-CCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
46171323 AAATTACCAAAATGCCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * * *
46171377 AAATTATCAAAATACCCCTAGTTTGTAGAATTACCAAACTACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
46171431 AAATTAC
1 AAATTAC
46171438 TGAAATATCC
Statistics
Matches: 253, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
53 49 0.19
54 204 0.81
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:46171487 original size:27 final size:27
Alignment explanation
Indices: 46171345--46171491 Score: 84
Period size: 27 Copynumber: 5.4 Consensus size: 27
46171335 TGCCCCTAGT
** * **
46171345 TTGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACTGAAATACCCTCGAC
* * *
46171372 TTGTAAAATTA-TCAAAATACCC-CTAGT
1 TTGTAAAATTACT-GAAATACCCTCGA-C
* * * *
46171399 TTGTAGAATTAC-CAAACTACCCTTGAT
1 TTGTAAAATTACTGAAA-TACCCTCGAC
* *
46171426 TTGTGAAATTACTGAAATATCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
* ** *
46171453 CTACAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
46171480 TTGTAAAATTAC
1 TTGTAAAATTAC
46171492 CAAAGTACCC
Statistics
Matches: 90, Mismatches: 24, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
26 3 0.03
27 83 0.92
28 4 0.04
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:46171516 original size:27 final size:27
Alignment explanation
Indices: 46171486--46171538 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
46171476 CGACTTGTAA
46171486 AATTACCAAAGTACCCCTGATTTACAG
1 AATTACCAAAGTACCCCTGATTTACAG
*** *
46171513 AATTACCATTTTACCCTTGATTTACA
1 AATTACCAAAGTACCCCTGATTTACA
46171539 AAAATACCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.34
Consensus pattern (27 bp):
AATTACCAAAGTACCCCTGATTTACAG
Found at i:46172005 original size:27 final size:27
Alignment explanation
Indices: 46171543--46172005 Score: 496
Period size: 27 Copynumber: 17.1 Consensus size: 27
46171533 TTTACAAAAA
* * *
46171543 TACCGAAACACCACTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
46171570 TAGCAAAATACCTCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** * *
46171597 TATTGAAATACCCCTCTAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** *
46171624 TACAAAAATATCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
46171651 TATCGAAATACCACTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** *
46171678 TATTGAAATACCCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
46171705 TACTGAAATACCCCTGTATGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
46171732 TATCGAAATACCCCTGTAGGGTATAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** * *
46171759 TACTAAAATACCCCTGTAAGGTAGAAC
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
46171786 TACCGAAATACCCCTATAGGGTATAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** * *
46171813 TACTAAAATACCCCTATAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
46171840 TATCGAAATACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
46171867 TACTGAAATACCCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
46171894 TACCGAAATACCACTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
46171921 TACCGAAATACCCTTGTAGGTTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
* ** *
46171948 TACTGATTTACCCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
46171975 TACCGAGATACCCTCT-TAGGGTAAAAT
1 TACCGAAATACCC-CTGTAGGGTAGAAT
46172002 TACC
1 TACC
46172006 ATTTTGCCCC
Statistics
Matches: 359, Mismatches: 76, Indels: 2
0.82 0.17 0.00
Matches are distributed among these distances:
27 357 0.99
28 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAT
Found at i:46172386 original size:22 final size:22
Alignment explanation
Indices: 46172353--46172411 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
46172343 CCCATTATCG
46172353 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
46172375 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
46172397 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
46172412 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:46172637 original size:28 final size:26
Alignment explanation
Indices: 46172576--46172650 Score: 78
Period size: 28 Copynumber: 2.8 Consensus size: 26
46172566 TAAGTGGCTT
* * *
46172576 TGCCACATTATTTGATTCTGGTGGCTA
1 TGCCACAATATCTG-TTCTGGTGACTA
*
46172603 TGCCACAAATATCTGTATCTGGTGACTC
1 TGCCAC-AATATCTGT-TCTGGTGACTA
*
46172631 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
46172651 CAGCAATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.12
27 16 0.39
28 20 0.49
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.37
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTA
Found at i:46172800 original size:31 final size:31
Alignment explanation
Indices: 46172765--46172844 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
46172755 TTGCATTCAC
* * *
46172765 ATTCTGATTTTGATTCTGTGACCTAATACTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
* *
46172796 ATTCTGATTCTGATTCTATCACCTGATTCTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
46172827 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTA
46172845 GTTCTGATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTAATACTG
Found at i:46172804 original size:6 final size:6
Alignment explanation
Indices: 46172793--46172852 Score: 70
Period size: 6 Copynumber: 9.8 Consensus size: 6
46172783 TGACCTAATA
*
46172793 CTGATT CTGATT CTGATT CT-ATCAC CTGATT CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
46172842 CT-AGTT CTGAT
1 CTGA-TT CTGAT
46172853 AATGTTTCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
5 3 0.06
6 39 0.83
7 3 0.06
8 2 0.04
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:46192546 original size:28 final size:28
Alignment explanation
Indices: 46192481--46192631 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
46192471 GAGATTGGCG
* * * *
46192481 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
46192510 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46192538 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46192566 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46192594 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46192621 CTGAGTGTGCG
1 CTAAGTGTGCG
46192632 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:46200760 original size:28 final size:28
Alignment explanation
Indices: 46200695--46200845 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
46200685 GAGATTGGCG
* * * *
46200695 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
46200724 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46200752 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46200780 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46200808 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46200835 CTGAGTGTGCG
1 CTAAGTGTGCG
46200846 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:46206177 original size:1 final size:1
Alignment explanation
Indices: 46206166--46206498 Score: 477
Period size: 1 Copynumber: 333.0 Consensus size: 1
46206156 ATGGTTCATT
* * *
46206166 AAAATAAAAAAAAAAAAAAAGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
46206231 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
46206296 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * ***** * *** ***
46206361 AAAAAAAAAAAAAAAATAAAAAAAAAAAACAAAAAAAAAAAGATGTGGAATAAAAATTCAAATGC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
46206426 AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
46206491 AAAAAAAA
1 AAAAAAAA
46206499 TATCTTGGAT
Statistics
Matches: 300, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
1 300 1.00
ACGTcount: A:0.94, C:0.01, G:0.02, T:0.03
Consensus pattern (1 bp):
A
Found at i:46206668 original size:1 final size:1
Alignment explanation
Indices: 46206664--46206712 Score: 71
Period size: 1 Copynumber: 49.0 Consensus size: 1
46206654 CTTTATTTGC
* * *
46206664 AAAAAAAAAAAAAAGAAAAAACAAAAAAAAAAAAAAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
46206713 TATGTCGTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.94, C:0.02, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:46223792 original size:12 final size:12
Alignment explanation
Indices: 46223775--46223811 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
46223765 ACTCGATCTC
46223775 ATATTTTGTACA
1 ATATTTTGTACA
*
46223787 ATATTTTGTACG
1 ATATTTTGTACA
*
46223799 GTATTTTGTACA
1 ATATTTTGTACA
46223811 A
1 A
46223812 AATGATCTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (12 bp):
ATATTTTGTACA
Found at i:46228725 original size:14 final size:14
Alignment explanation
Indices: 46228706--46228734 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
46228696 AATAATGCCT
46228706 CCAAATTTTCAAAG
1 CCAAATTTTCAAAG
46228720 CCAAATTTTCAAAG
1 CCAAATTTTCAAAG
46228734 C
1 C
46228735 ATTTAGCCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (14 bp):
CCAAATTTTCAAAG
Found at i:46232426 original size:56 final size:56
Alignment explanation
Indices: 46232366--46232496 Score: 172
Period size: 56 Copynumber: 2.3 Consensus size: 56
46232356 CAGATAGGGT
* * *
46232366 CTTACTCGTACATATATATCGGAATCACATATCGATGCAAACGTATAAAACGTGGC
1 CTTACTCGTACACATATATCGAAATCACATATCGATGCAAACGTATAAAACGTGAC
* * * * * *
46232422 CTTACTCGTACACATATATCGAAATCACGTATTGATGCCAACGTTTAAAATGTGAT
1 CTTACTCGTACACATATATCGAAATCACATATCGATGCAAACGTATAAAACGTGAC
*
46232478 CTTACTCGCACACATATAT
1 CTTACTCGTACACATATAT
46232497 TGATGCCATG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 65 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
CTTACTCGTACACATATATCGAAATCACATATCGATGCAAACGTATAAAACGTGAC
Found at i:46234583 original size:28 final size:28
Alignment explanation
Indices: 46234551--46234616 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
46234541 TGGGAAGTAG
* *
46234551 TTGGGCCTAATGGG-TCATATGAATGTGA
1 TTGGGCCTAATGGGCT-ATATGAACGAGA
*
46234579 TTGGGCCTGATGGGCTATATGAACGAGA
1 TTGGGCCTAATGGGCTATATGAACGAGA
46234607 TTGGGCCTAA
1 TTGGGCCTAA
46234617 AAGGGCCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 32 0.97
29 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (28 bp):
TTGGGCCTAATGGGCTATATGAACGAGA
Found at i:46234961 original size:27 final size:27
Alignment explanation
Indices: 46234931--46235457 Score: 438
Period size: 27 Copynumber: 19.6 Consensus size: 27
46234921 TAATAGAGAG
* * * *
46234931 AAATTATCGAAACACCCCCGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46234958 AAATTATCGAAATACCATCGATTTGCA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46234985 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
46235012 ATATTACCAAAATATCCTCGA-TTCTA
1 AAATTACCGAAATACCCTCGATTTGTA
**
46235038 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46235065 AAATTACCG-AACACCCTCAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* ** *
46235091 AAATTACCAAAATACCCTTAATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
*
46235118 AAATTACCGAAATACCC-CTAATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
** * *
46235145 AAATTACTAAAATTCCCTCGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** ** *
46235172 AAATTATTGAAATACCCTTAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
46235199 AAATTACCGAAATACCATCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
46235225 AAATTATTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46235252 AAATTACCAAAACACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46235279 GAATTACCGAAACACCATCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
46235306 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46235333 AAATTACCAAAATACCTTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
46235360 AAATTACCGAAACATCCC-CGATTTGTA
1 AAATTACCGAAATA-CCCTCGATTTGTA
* * * * *
46235387 AAATCATCGAAATACCTTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
46235414 AAATTACCAAAATACCCTCG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
46235441 AAATGACCGACATACCC
1 AAATTACCGAAATACCC
46235458 CAATAACTGT
Statistics
Matches: 400, Mismatches: 92, Indels: 16
0.79 0.18 0.03
Matches are distributed among these distances:
26 66 0.17
27 331 0.83
28 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:46235201 original size:81 final size:80
Alignment explanation
Indices: 46234952--46235390 Score: 404
Period size: 80 Copynumber: 5.5 Consensus size: 80
46234942 ACACCCCCGG
* * * * * * *
46234952 TTTGTAAAATTATCGAAATACCATCGATTTGCAAAATTACTGAAATACCCTCAAATTGTAATATT
1 TTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
* **
46235017 ACCAAAATATCCTCGA
66 A-CAAAATACCCTTAA
* ** * * ** * * *
46235033 -TTCTAAAATTATTGAAATACCCTCGATTTGTAAAATTAC-CGAACACCCTCAATTTTTAAAATT
1 TTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
46235096 ACCAAAATACCCTTAA
66 A-CAAAATACCCTTAA
* * * * * *
46235112 TTTATAAAATTACCGAAATACC-CCTAATTTGTAAAATTACTAAAATTCCCTCGGTTTGTAAAAT
1 TTTGTAAAATTACCGAAACACCATC-GATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAAT
**
46235176 TATTGAAATACCCTTAA
65 TA-CAAAATACCCTTAA
* * * * *
46235193 TTTTTAAAATTACCGAAATACCATCGA-TTGTAAAATTATTGAAATACCCTCAATTTGTAAAATT
1 TTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
* *
46235257 ACCAAA-ACACCTTCGA
66 ACAAAATAC-CCTT-AA
* *
46235273 TTTGTAGAATTACCGAAACACCATCGATTTGTAAAATTACTAAAATACCCTTGATTTGTAAAATT
1 TTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
* *
46235338 ACCAAAATACCTTTGA
66 A-CAAAATACCCTTAA
*
46235354 TTTGTAAAATTACCGAAACATCC-CCGATTTGTAAAAT
1 TTTGTAAAATTACCGAAACA-CCATCGATTTGTAAAAT
46235391 CATCGAAATA
Statistics
Matches: 298, Mismatches: 50, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.01
79 39 0.13
80 125 0.42
81 120 0.40
82 10 0.03
83 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (80 bp):
TTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
ACAAAATACCCTTAA
Found at i:46235238 original size:134 final size:136
Alignment explanation
Indices: 46234952--46235433 Score: 462
Period size: 134 Copynumber: 3.6 Consensus size: 136
46234942 ACACCCCCGG
* * * * * *
46234952 TTTGTAAAATTATCGAAATACCATCGATTTGCAAAATTACTGAAATA-CCCTCAAATTGTAATAT
1 TTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCTCAATTTGTAAAAT
* * * *
46235016 TACCAAAATAT-CCTC-GATTCTAAAATTATTGAAATACCCTCGATTTGTAAAATTACCG-AACA
66 TACCAAAAT-TCCCTCGGTTTGTAAAATTATTGAAATACCCTTGATTTGTAAAATTACCGAAATA
* *
46235078 CCCTCAA
130 CCATCGA
* * * * *
46235085 TTTTTAAAATTACCAAAATACCCTTAATTTATAAAATTACCGAAATACCCCT-AATTTGTAAAAT
1 TTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCTCAATTTGTAAAAT
* * *
46235149 TACTAAAATTCCCTCGGTTTGTAAAATTATTGAAATACCCTTAATTTTTAAAATTACCGAAATAC
66 TACCAAAATTCCCTCGGTTTGTAAAATTATTGAAATACCCTTGATTTGTAAAATTACCGAAATAC
46235214 CATCGA
131 CATCGA
* * * *
46235220 -TTGTAAAATTATTGAAATACCCTCAATTTGTAAAATTACC-AAA-ACACCTTCGATTTGTAGAA
1 TTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCGAAATAC-CCCTCAATTTGTAAAA
* ** * * * * *
46235282 TTACCGAAACACCATCGATTTGTAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATA
65 TTACCAAAATTCCCTCGGTTTGTAAAATTATTGAAATACCCTTGATTTGTAAAATTACCGAAATA
* *
46235347 CCTTTGA
130 CCATCGA
* * * * * ** ** *
46235354 TTTGTAAAATTACCGAAACATCCC-CGATTTGTAAAATCATCGAAATACCTTTGTA-GTGTAAAA
1 TTTGTAAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCGAAATACCCCTCAATTTGTAAAA
*
46235417 TTACCAAAATACCCTCG
65 TTACCAAAATTCCCTCG
46235434 TAGTGTAAAA
Statistics
Matches: 283, Mismatches: 56, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
132 3 0.01
133 66 0.23
134 144 0.51
135 58 0.20
136 10 0.04
137 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (136 bp):
TTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCTCAATTTGTAAAAT
TACCAAAATTCCCTCGGTTTGTAAAATTATTGAAATACCCTTGATTTGTAAAATTACCGAAATAC
CATCGA
Found at i:46241469 original size:46 final size:45
Alignment explanation
Indices: 46241414--46241585 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 45
46241404 TGGGCATCCA
* *
46241414 AACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCAG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*** * *
46241460 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
* *
46241507 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*
46241553 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46241586 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCG
Found at i:46244480 original size:28 final size:28
Alignment explanation
Indices: 46244447--46244503 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
46244437 TAGTTGGGTT
* * *
46244447 TGATGGGCTATATGAATGTGATTGGGCC
1 TGATGGGCTATACGAACGAGATTGGGCC
46244475 TGATGGGCTATACGAACGAGATTGGGCC
1 TGATGGGCTATACGAACGAGATTGGGCC
46244503 T
1 T
46244504 AAAAGGGCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.14, G:0.35, T:0.28
Consensus pattern (28 bp):
TGATGGGCTATACGAACGAGATTGGGCC
Found at i:46244876 original size:27 final size:27
Alignment explanation
Indices: 46244820--46245317 Score: 407
Period size: 27 Copynumber: 18.6 Consensus size: 27
46244810 TAATAAAGAG
* * * * *
46244820 AAATTATCGAAACACCCCCGGTTTCTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
46244847 AAATTATCGAAATACCGTCAATTTGCA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
46244874 AAATTATTGAAATACCATCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46244901 ATATTACCGAAATATCCTCGA-TTCTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
46244927 AAATTATTGAAATACCCTTGATTCGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46244954 AAATTACCG-AACACCCTCAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* **
46244980 AAATTACCAAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
46245007 AAATTACCGAAATACCC-CTGATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
** *
46245034 AAATTACTAAAATACCCTCGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** ** *
46245061 AAATTATTGAAATACCCTTAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
46245088 AAATTACCGAAATACCATCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
46245114 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
46245141 AAATTACCAAAATACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46245168 GAATTACCGAAACACCATCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * **
46245195 AAATTACTAAAATACCATTTATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
46245222 AAATTACCGAAATACCTTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
46245249 AAATTACCGAAACATA-CC-CAATTTGTA
1 AAATTACCG-AA-ATACCCTCGATTTGTA
* * * * *
46245276 AAATCATCGAAATACCTTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
*
46245303 AAATTACCAAAATAC
1 AAATTACCGAAATAC
46245318 TCTCATAGTG
Statistics
Matches: 375, Mismatches: 86, Indels: 20
0.78 0.18 0.04
Matches are distributed among these distances:
25 3 0.01
26 66 0.18
27 299 0.80
28 4 0.01
29 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:46245273 original size:81 final size:80
Alignment explanation
Indices: 46244845--46245279 Score: 405
Period size: 80 Copynumber: 5.4 Consensus size: 80
46244835 CCCCGGTTTC
* * * * * * * * *
46244845 TAAAATTATCGAAATACCGTCAATTTGCAAAATTATTGAAATACCATCAATTTGTAATATTACCG
1 TAAAATTACCGAAATACC-ACGATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCA
* ** *
46244910 AAATATCCTCGA-TTC
65 AAATACCCTTAATTTG
** * ** * *
46244925 TAAAATTATTGAAATACC-CTTGATTCGTAAAATTAC-CGAACACCCTCAATTTTTAAAATTACC
1 TAAAATTACCGAAATACCAC--GATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACC
46244988 AAAATACCCTTAATTTG
64 AAAATACCCTTAATTTG
* ** ***
46245005 TAAAATTACCGAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGGTTTGTAAAATTATTG
1 TAAAATTACCGAAATACCAC-GATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCA
*
46245070 AAATACCCTTAATTTT
65 AAATACCCTTAATTTG
*
46245086 TAAAATTACCGAAATACCATCGA-TTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCA
1 TAAAATTACCGAAATACCA-CGATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCA
*
46245150 AAATA-CCTTCGATTTG
65 AAATACCCTT-AATTTG
* * * ** *
46245166 TAGAATTACCGAAACACCATCGATTTGTAAAATTACTAAAATACCATTTATTTGTAAAATTACCG
1 TAAAATTACCGAAATACCA-CGATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCA
* *
46245231 AAATACCTTTGATTTG
65 AAATACCCTTAATTTG
*
46245247 TAAAATTACCGAAACATACC-CAATTTGTAAAAT
1 TAAAATTACCG-AA-ATACCACGATTTGTAAAAT
46245280 CATCGAAATA
Statistics
Matches: 295, Mismatches: 49, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.00
79 34 0.12
80 126 0.43
81 124 0.42
82 6 0.02
83 4 0.01
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.33
Consensus pattern (80 bp):
TAAAATTACCGAAATACCACGATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAA
AATACCCTTAATTTG
Found at i:46247087 original size:14 final size:15
Alignment explanation
Indices: 46247059--46247088 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46247049 TACCCAGAAT
46247059 TTGGGCCTATGAGTA
1 TTGGGCCTATGAGTA
46247074 TTGGGCCT-TGAGTA
1 TTGGGCCTATGAGTA
46247088 T
1 T
46247089 GGGTTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (15 bp):
TTGGGCCTATGAGTA
Found at i:46249316 original size:27 final size:27
Alignment explanation
Indices: 46249198--46249322 Score: 130
Period size: 27 Copynumber: 4.7 Consensus size: 27
46249188 TCAGTTTACC
* *
46249198 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCGAAATACCCTCAGTTTGTA
* *
46249224 AAATTACC-AAAGTACCCTCGGTTTATA
1 AAATTACCGAAA-TACCCTCAGTTTGTA
* *
46249251 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACCGAAATACCCTCAG-TTTGTA
*
46249278 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCTCAGTTTGTA
**
46249305 AAATTATTGAAATACCCT
1 AAATTACCGAAATACCCT
46249323 TAACATGTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
25 3 0.04
26 15 0.18
27 61 0.73
28 4 0.05
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCAGTTTGTA
Found at i:46249318 original size:54 final size:53
Alignment explanation
Indices: 46249188--46249366 Score: 162
Period size: 54 Copynumber: 3.3 Consensus size: 53
46249178 TTAGAATACT
*
46249188 TCAGTTTACCAAATTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTACCC
1 TCAGTTTACAAAATTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTACCC
* * ** * * *
46249241 TCGGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAA-TACCC
1 TCAGTTTACAAAATTACTGAAATA-CCCCCAGTTGTAAAATTACC-AAAGTACCC
* * ** ** *
46249295 TCAGTTTGCAAAATTATTGAAATACCCTTAACATGTAAAATTATCAAAGTACCC
1 TCAGTTTACAAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCC
** *
46249349 TCAAATTATAAAATTACT
1 TCAGTTTACAAAATTACT
46249367 ATTTTACCAT
Statistics
Matches: 97, Mismatches: 25, Indels: 7
0.75 0.19 0.05
Matches are distributed among these distances:
53 24 0.25
54 70 0.72
55 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (53 bp):
TCAGTTTACAAAATTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTACCC
Found at i:46249374 original size:27 final size:27
Alignment explanation
Indices: 46249358--46249539 Score: 247
Period size: 27 Copynumber: 6.7 Consensus size: 27
46249348 CTCAAATTAT
* * *
46249358 AAAATTACTATTTTACCATCGATTTAC
1 AAAATTACCATTTTACCCTTGATTTAC
* * *
46249385 AGAATTACTATTTTACCCTTGTTTTAC
1 AAAATTACCATTTTACCCTTGATTTAC
* * *
46249412 AAAATTACCGTTTTACCCTTGATTGAT
1 AAAATTACCATTTTACCCTTGATTTAC
* *
46249439 AGAATTACCATTTTACCCTTAATTTAC
1 AAAATTACCATTTTACCCTTGATTTAC
*
46249466 AAAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACCATTTTACCCTTGATTTAC
46249493 AAAATTACCATTTTACCCTTGATTTAC
1 AAAATTACCATTTTACCCTTGATTTAC
*
46249520 AGAATTACCATTTTACCCTT
1 AAAATTACCATTTTACCCTT
46249540 AAGGTGTTAA
Statistics
Matches: 135, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 135 1.00
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (27 bp):
AAAATTACCATTTTACCCTTGATTTAC
Found at i:46249416 original size:81 final size:81
Alignment explanation
Indices: 46249331--46249502 Score: 184
Period size: 81 Copynumber: 2.1 Consensus size: 81
46249321 CTTAACATGT
* * * * *
46249331 AAAATTATCAAAGTACCCTCAAATT-ATAAAATTACTATTTTACCATCGATTTACAGAATTACTA
1 AAAATTACCAAAGTACCCT-AAATTGATAAAATTACCATTTTACCATCAATTTACAAAATTACCA
*
46249395 TTTTACCCTTGTTTTAC
65 TTTTACCCTTGATTTAC
**** ** * * * *
46249412 AAAATTACCGTTTTACCCTTGATTGATAGAATTACCATTTTACCCTTAATTTACAAAATTACCGT
1 AAAATTACCAAAGTACCCTAAATTGATAAAATTACCATTTTACCATCAATTTACAAAATTACCAT
46249477 TTTACCCTTGATTTAC
66 TTTACCCTTGATTTAC
46249493 AAAATTACCA
1 AAAATTACCA
46249503 TTTTACCCTT
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
80 3 0.04
81 70 0.96
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (81 bp):
AAAATTACCAAAGTACCCTAAATTGATAAAATTACCATTTTACCATCAATTTACAAAATTACCAT
TTTACCCTTGATTTAC
Found at i:46249818 original size:27 final size:26
Alignment explanation
Indices: 46249774--46249825 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46249764 CTCATTGCAT
*
46249774 TCTGGTGGCCTCGCCACATATATCTGC
1 TCTGGTGACCTCGCCACA-ATATCTGC
* *
46249801 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
46249826 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGC
Found at i:46249893 original size:26 final size:27
Alignment explanation
Indices: 46249864--46249923 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
46249854 CCACATATAT
*
46249864 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
46249890 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
46249917 ATATCTG
1 ATATCTG
46249924 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:46250087 original size:6 final size:6
Alignment explanation
Indices: 46250042--46250144 Score: 77
Period size: 6 Copynumber: 16.8 Consensus size: 6
46250032 TTGCATTCAC
* * * *
46250042 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATACTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
46250091 ATTCT- -TTCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATT---CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
46250140 ATTCT
1 ATTCT
46250145 AGTTCTAATA
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
4 2 0.03
5 2 0.03
6 67 0.85
7 5 0.06
8 1 0.01
9 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:46250095 original size:37 final size:37
Alignment explanation
Indices: 46250042--46250132 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 37
46250032 TTGCATTCAC
* *
46250042 ATTCTGATTTTGATTCTGTT-ACCTGATACTGATACTG
1 ATTCTGATTCTGATTCT-TTCACCTAATACTGATACTG
* * *
46250079 ATTCTGATTCTAATTCTTTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTTTCACCTAATACTGATACTG
46250116 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
46250133 CATTTTGATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
36 2 0.04
37 45 0.96
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTTTCACCTAATACTGATACTG
Found at i:46250887 original size:26 final size:27
Alignment explanation
Indices: 46250815--46251267 Score: 369
Period size: 27 Copynumber: 16.9 Consensus size: 27
46250805 AATACTATCA
* * *
46250815 ATTTGCAAAATTACTAAAATACCCTTG
1 ATTTGTAAAATTACCAAAATACCCTCG
* * *
46250842 ATTTGTAATATTACCGAAATATCCTCG
1 ATTTGTAAAATTACCAAAATACCCTCG
*
46250869 A-TTCTAAAATTACCAAAATACCCTCG
1 ATTTGTAAAATTACCAAAATACCCTCG
* * * *
46250895 ATTTGTAAAATTATCGAAACACCCTCA
1 ATTTGTAAAATTACCAAAATACCCTCG
* * *
46250922 ATTTGTAAAGTTACTAAAATACCCT-T
1 ATTTGTAAAATTACCAAAATACCCTCG
* * *
46250948 ACTTTGTAAAATTACCGAAATACCCCCA
1 A-TTTGTAAAATTACCAAAATACCCTCG
* ** *
46250976 ATCTACAAAATTACTAAAATACCCTCG
1 ATTTGTAAAATTACCAAAATACCCTCG
*** **
46251003 ATTTGTAAAATTATTGAAATACCCTTA
1 ATTTGTAAAATTACCAAAATACCCTCG
* * *
46251030 ATTTGTAAAATTATCGAAATACCCTCT
1 ATTTGTAAAATTACCAAAATACCCTCG
*** *
46251057 A-TTGTAAAATTATTGAAATACCCTTG
1 ATTTGTAAAATTACCAAAATACCCTCG
* * * *
46251083 ATTTGTAAAATTTCTAAAACACCCTCT
1 ATTTGTAAAATTACCAAAATACCCTCG
* *
46251110 ATTTGTAAAATTACCAAAACACCCTTG
1 ATTTGTAAAATTACCAAAATACCCTCG
* * *
46251137 ATTTGTAAAATTATCGAAACACCCTCG
1 ATTTGTAAAATTACCAAAATACCCTCG
** *
46251164 ATTTGTAAAATTAGTAAAATACCCTTG
1 ATTTGTAAAATTACCAAAATACCCTCG
46251191 ATTTGTAAAATTACCGAAACAT-CCCT-G
1 ATTTGTAAAATTACC-AAA-ATACCCTCG
* * * *
46251218 ATTTGTAAAATTATCGAAATACCTTTG
1 ATTTGTAAAATTACCAAAATACCCTCG
* *
46251245 -TAGTGTAAAATTACTAAAATACC
1 AT-TTGTAAAATTACCAAAATACC
46251268 TTTGTAGTGT
Statistics
Matches: 344, Mismatches: 73, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
25 2 0.01
26 52 0.15
27 280 0.81
28 8 0.02
29 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACCAAAATACCCTCG
Found at i:46250954 original size:54 final size:54
Alignment explanation
Indices: 46250800--46251267 Score: 423
Period size: 54 Copynumber: 8.7 Consensus size: 54
46250790 GGGTGTTACA
** * * *
46250800 ATCGAAATACTATCAATTTGCAAAATTACTAAAATACCCTTGATTTGTAATATT
1 ATCGAAATACCCTCAATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
* * * * *
46250854 ACCGAAATATCCTCGA-TTCTAAAATTACCAAAATACCCTCGATTTGTAAAATT
1 ATCGAAATACCCTCAATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
* * *
46250907 ATCGAAACACCCTCAATTTGTAAAGTTACTAAAATACCCT-TACTTTGTAAAATT
1 ATCGAAATACCCTCAATTTGTAAAATTACTAAAATACCCTCGA-TTTGTAAAATT
* * * **
46250961 ACCGAAATACCCCCAATCTACAAAATTACTAAAATACCCTCGATTTGTAAAATT
1 ATCGAAATACCCTCAATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
* * * *
46251015 ATTGAAATACCCTTAATTTGTAAAATTA-TCGAAATACCCTCTA-TTGTAAAATT
1 ATCGAAATACCCTCAATTTGTAAAATTACT-AAAATACCCTCGATTTGTAAAATT
* ** * * *
46251068 ATTGAAATACCCTTGATTTGTAAAATTTCTAAAACACCCTCTATTTGTAAAATT
1 ATCGAAATACCCTCAATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
* * * ** * *
46251122 ACCAAAACACCCTTGATTTGTAAAATTA-TCGAAACACCCTCGATTTGTAAAATT
1 ATCGAAATACCCTCAATTTGTAAAATTACT-AAAATACCCTCGATTTGTAAAATT
* ** *
46251176 AGT-AAAATACCCTTGATTTGTAAAATTACCGAAACAT-CCCT-GATTTGTAAAATT
1 A-TCGAAATACCCTCAATTTGTAAAATTA-CTAAA-ATACCCTCGATTTGTAAAATT
*** *
46251230 ATCGAAATA-CCTTTGTAGTGTAAAATTACTAAAATACC
1 ATCGAAATACCCTCAAT-TTGTAAAATTACTAAAATACC
46251268 TTTGTAGTGT
Statistics
Matches: 344, Mismatches: 56, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.01
53 106 0.31
54 228 0.66
55 7 0.02
56 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (54 bp):
ATCGAAATACCCTCAATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
Found at i:46250987 original size:81 final size:80
Alignment explanation
Indices: 46250873--46251267 Score: 447
Period size: 81 Copynumber: 4.9 Consensus size: 80
46250863 TCCTCGATTC
* * *
46250873 TAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAGTTACTA
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTACTA
46250938 AAATACCCTTACTTTG
66 AAATACCCTTA-TTTG
* * * ** * * *
46250954 TAAAATTACCGAAATACCCCCAATCTACAAAATTA-CTAAAATACCCTCGATTTGTAAAATTATT
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-GAAACACCCTCGATTTGTAAAATTACT
*
46251018 GAAATACCCTTAATTTG
65 AAAATACCCTT-ATTTG
* * * * * *
46251035 TAAAATTATCGAAATACCCTCTA-TTGTAAAATTATTGAAATACCCTTGATTTGTAAAATTTCTA
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTACTA
*
46251099 AAACACCCTCTATTTG
66 AAATACCCT-TATTTG
* * * *
46251115 TAAAATTACCAAAACACCCTTGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTAGTA
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTACTA
46251180 AAATACCCTTGATTTG
66 AAATACCCTT-ATTTG
* * * * *
46251196 TAAAATTACCGAAACATCCCT-GATTTGTAAAATTATCGAAATACCTTTG-TAGTGTAAAATTAC
1 TAAAATTACCGAAATA-CCCTCGATTTGTAAAATTATCGAAACACCCTCGAT-TTGTAAAATTAC
46251259 TAAAATACC
64 TAAAATACC
46251268 TTTGTAGTGT
Statistics
Matches: 264, Mismatches: 42, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
80 65 0.25
81 194 0.73
82 5 0.02
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (80 bp):
TAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTACTA
AAATACCCTTATTTG
Found at i:46251306 original size:27 final size:27
Alignment explanation
Indices: 46251249--46251313 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
46251239 CCTTTGTAGT
* ** * *
46251249 GTAAAATTACTAAAATACCTTTGTAGT
1 GTAAAATGACTAAAATACCCCTATAGG
*
46251276 GTAAAATGACTAACATACCCCTATAGG
1 GTAAAATGACTAAAATACCCCTATAGG
46251303 GTAAAATGACT
1 GTAAAATGACT
46251314 GTTTTGCCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (27 bp):
GTAAAATGACTAAAATACCCCTATAGG
Found at i:46251786 original size:11 final size:11
Alignment explanation
Indices: 46251770--46251802 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
46251760 ATTGCATGTA
46251770 TGATATTATTG
1 TGATATTATTG
46251781 TGATATTATTG
1 TGATATTATTG
46251792 TGATATTATTG
1 TGATATTATTG
46251803 CGATGTGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (11 bp):
TGATATTATTG
Found at i:46260800 original size:86 final size:85
Alignment explanation
Indices: 46260646--46260804 Score: 194
Period size: 86 Copynumber: 1.9 Consensus size: 85
46260636 TATAGCTTGT
* * * * * * * *
46260646 ACAATGTCATATCTCAGATATGGTCTTACATGTTATCACATATCAATGCCACTGTCCGAAACAGG
1 ACAATGTCATATCCCAGACATGGTCTTACACGTAATCAAATATCAACGCCAATGTCCCAAACAGG
46260711 GTCTTACACAAAATTGATTA
66 GTCTTACACAAAATTGATTA
* *
46260731 ACAATGTCAATGTCCCAGACATGGTCTTACACGTAATCATAATAT-AACGCCAATGTCCCAGACA
1 ACAATGTC-ATATCCCAGACATGGTCTTACACGTAATCA-AATATCAACGCCAATGTCCCAAACA
*
46260795 TGGTCTTACA
64 GGGTCTTACA
46260805 AGTAATCACA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
85 8 0.13
86 49 0.80
87 4 0.07
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (85 bp):
ACAATGTCATATCCCAGACATGGTCTTACACGTAATCAAATATCAACGCCAATGTCCCAAACAGG
GTCTTACACAAAATTGATTA
Found at i:46261646 original size:30 final size:30
Alignment explanation
Indices: 46261610--46261670 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
46261600 CTTCTTTTTC
46261610 TTTCTCAATTTTAGTTGATAGCAAGAAAGA
1 TTTCTCAATTTTAGTTGATAGCAAGAAAGA
46261640 TTTCTCAATTTTAGTTGATAGCAAGAAAGA
1 TTTCTCAATTTTAGTTGATAGCAAGAAAGA
46261670 T
1 T
46261671 GAACACAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (30 bp):
TTTCTCAATTTTAGTTGATAGCAAGAAAGA
Found at i:46265035 original size:18 final size:18
Alignment explanation
Indices: 46265012--46265060 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
46265002 CTTGGCCCAT
46265012 TGCAGTAACAATAGA-CAG
1 TGCAGTAACAATA-ATCAG
* *
46265030 TGCAGTAATAGTAATCAG
1 TGCAGTAACAATAATCAG
46265048 TGCAGTAACAATA
1 TGCAGTAACAATA
46265061 TACAAGTCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAATAATCAG
Found at i:46265113 original size:23 final size:24
Alignment explanation
Indices: 46265073--46265117 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
46265063 CAAGTCCTAC
*
46265073 CCATCTAGCCTCTACACTCCATCT
1 CCATCTAACCTCTACACTCCATCT
46265097 CCATCTAACC-CTACACTCCAT
1 CCATCTAACCTCTACACTCCAT
46265118 GTGGGGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.24, C:0.47, G:0.02, T:0.27
Consensus pattern (24 bp):
CCATCTAACCTCTACACTCCATCT
Found at i:46265572 original size:81 final size:81
Alignment explanation
Indices: 46265367--46265582 Score: 326
Period size: 81 Copynumber: 2.7 Consensus size: 81
46265357 ATATACACAC
*
46265367 ATCACATAAGGGCAAAATAGTCATCTTACCATATAAGGGCAAAACAATCATTTTACCACATAAGG
1 ATCACATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAATCATTTTACCACATAAGG
*
46265432 GCAAAATAGTCATTTT
66 GCAAAACAGTCATTTT
* * *
46265448 ACCACATAAGGGCAAAATAGTCATTTTACCACAAAAGGGCAAAAC-ATCCATTTTACCACATAAG
1 ATCACATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAAT-CATTTTACCACATAAG
46265512 GGCAAAACAGTCATTTT
65 GGCAAAACAGTCATTTT
* * * * *
46265529 ATCACATAAGGGAAAAATAGTCATTTTACCATATAATGACAAAATAATAATTTT
1 ATCACATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAATCATTTT
46265583 GATCAATCAG
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 2 0.02
81 116 0.97
82 2 0.02
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (81 bp):
ATCACATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAATCATTTTACCACATAAGG
GCAAAACAGTCATTTT
Found at i:46265582 original size:27 final size:27
Alignment explanation
Indices: 46265369--46265574 Score: 288
Period size: 27 Copynumber: 7.6 Consensus size: 27
46265359 ATACACACAT
*
46265369 CACATAAGGGCAAAATAGTCATCTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
46265396 CATATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
46265423 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
46265450 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
46265477 CACAAAAGGGCAAAACA-TCCATTTTAC
1 CACATAAGGGCAAAATAGT-CATTTTAC
* *
46265504 CACATAAGGGCAAAACAGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
*
46265531 CACATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
46265558 CATATAATGACAAAATA
1 CACATAAGGGCAAAATA
46265575 ATAATTTTGA
Statistics
Matches: 159, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 157 0.99
28 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:46267638 original size:46 final size:46
Alignment explanation
Indices: 46267504--46267624 Score: 233
Period size: 46 Copynumber: 2.6 Consensus size: 46
46267494 TATATACACG
46267504 TCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATCCA
1 TCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATCCA
46267550 TCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATCCA
1 TCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATCCA
*
46267596 TCTCATACACATTTCGCATTAGCCATTCG
1 TCTCATACACGTTTCGCATTAGCCATTCG
46267625 GCTTCGCCAC
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
TCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATCCA
Found at i:46267683 original size:47 final size:47
Alignment explanation
Indices: 46267652--46267991 Score: 581
Period size: 47 Copynumber: 7.2 Consensus size: 47
46267642 CACTTCCACG
** *
46267652 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGCTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
** *
46267699 TTCATCACATTATCCATTCGTCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
46267746 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
46267793 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
46267840 TTCATCACATTGGCCATTTGGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
46267887 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
46267934 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
46267981 TTCATTACATT
1 TTCATCACATT
46267992 AAATCCTAAA
Statistics
Matches: 276, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:46267718 original size:94 final size:94
Alignment explanation
Indices: 46267612--46267992 Score: 577
Period size: 94 Copynumber: 4.1 Consensus size: 94
46267602 ACACATTTCG
** * * * **
46267612 CATTAGCCATTCGG-CTTCGCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTACC
1 CATTAGCCATTCGGCCTT-ATCACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCC
* *
46267675 TTATCACATATATGCATGCTCACATTCATCA
64 TTATCACACATATGCATGTTCACATTCATCA
* *
46267706 CATTATCCATTCGTCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
46267771 ATCACACATATGCATGTTCACATTCATCA
66 ATCACACATATGCATGTTCACATTCATCA
* *
46267800 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTTGGCCTT
1 CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
46267865 ATCACACATATGCATGTTCATATTCATCA
66 ATCACACATATGCATGTTCACATTCATCA
*
46267894 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
46267959 ATCACATATATGCATGTTCACATTCATTA
66 ATCACACATATGCATGTTCACATTCATCA
46267988 CATTA
1 CATTA
46267993 AATCCTAAAT
Statistics
Matches: 264, Mismatches: 21, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
93 1 0.00
94 260 0.98
95 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (94 bp):
CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATGCATGTTCACATTCATCA
Found at i:46267823 original size:22 final size:22
Alignment explanation
Indices: 46267749--46267824 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
46267739 GTTCACATTC
46267749 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
46267771 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
46267795 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
46267818 ATCACAT
1 ATCACAT
46267825 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:46267917 original size:22 final size:22
Alignment explanation
Indices: 46267890--46267965 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
46267880 GTTCATATTC
46267890 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
46267912 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
46267936 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
46267959 ATCACAT
1 ATCACAT
46267966 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:46279681 original size:56 final size:56
Alignment explanation
Indices: 46279621--46279751 Score: 174
Period size: 56 Copynumber: 2.3 Consensus size: 56
46279611 CAGATAGGGT
*
46279621 CTTACTCGTACATATATATC-AGAATCACATATCGATGCCAACGTATAAAACGTGGC
1 CTTACTCGTACACATATATCGA-AATCACATATCGATGCCAACGTATAAAACGTGGC
* * * * * *
46279677 CTTACTCGTGCACATATATCGAAATCACGTATTGATGCCAACGTTTAAAATGTGGT
1 CTTACTCGTACACATATATCGAAATCACATATCGATGCCAACGTATAAAACGTGGC
*
46279733 CTTACTCGCACACATATAT
1 CTTACTCGTACACATATAT
46279752 TGATGCCATG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
56 64 0.98
57 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (56 bp):
CTTACTCGTACACATATATCGAAATCACATATCGATGCCAACGTATAAAACGTGGC
Found at i:46281023 original size:28 final size:28
Alignment explanation
Indices: 46280991--46281071 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 28
46280981 TGGGAAGTAG
*
46280991 TTGGGCCTAATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAATGAGA
* * *
46281019 TTGGGCCTGATGGGCTATATGAACGAGA
1 TTGGGCCTAATGGGCCATATGAATGAGA
* *
46281047 TTGGGCCTAAAAGGGCCAAATGAAT
1 TTGGGCCT-AATGGGCCATATGAAT
46281072 AAGTGTGGAT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 32 0.74
29 11 0.26
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGAGA
Found at i:46281875 original size:27 final size:27
Alignment explanation
Indices: 46281371--46281896 Score: 404
Period size: 27 Copynumber: 19.6 Consensus size: 27
46281361 TAATAAAGAG
* * * *
46281371 AAATTATCGAAACACCCCCGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46281398 AAATTATCGAAATACCATCGATTTGCA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
46281425 AAATTATTGAAATA-CCTCAAATTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* ** *
46281451 ATATTACCGAAATATTCTCGA-TTCTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
46281477 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * * *
46281504 AAATTTTCG-AACACCCTCAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* **
46281530 AAATTACCAAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
46281557 AAATTACTGAAATACCC-CTAATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
**
46281584 AAATTACTAAAATACCCTC-AGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
** ** *
46281611 AAATTATTGAAATACCCTTAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
46281638 AAATTACCGAAATACCATCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
46281664 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46281691 AAATTACCAAAACACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
46281718 GAATTATCGAAACACCATCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
46281745 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
46281772 AAATTACTGAAATACCTTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
46281799 AAATTACCGAAACATCCC-CGATTTGTA
1 AAATTACCGAAATA-CCCTCGATTTGTA
* * * * *
46281826 AAATCATCGAAATACCTTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
46281853 AAATTACCAAAATACCCTCG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
46281880 AAATGACCGACATACCC
1 AAATTACCGAAATACCC
46281897 CAATAACTGT
Statistics
Matches: 400, Mismatches: 88, Indels: 22
0.78 0.17 0.04
Matches are distributed among these distances:
26 84 0.21
27 312 0.78
28 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:46282378 original size:242 final size:242
Alignment explanation
Indices: 46281953--46282445 Score: 950
Period size: 242 Copynumber: 2.0 Consensus size: 242
46281943 AATTTGACTA
46281953 ATTTGATTATGAAAGTATGACTGCGTTTTAATTGACTTGACTGTGGTTGTATGACTGACATGCTC
1 ATTTGATTATGAAAGTATGACTGCGTTTTAATTGACTTGACTGTGGTTGTATGACTGACATGCTC
46282018 TTAATATCTTTTTTAAAAGACTGTTATTGAGTACGGCCATTCTGCATACACGTGTGATGATTGAG
66 TTAATATCTTTTTTAAAAGACTGTTATTGAGTACGGCCATTCTGCATACACGTGTGATGATTGAG
*
46282083 CATGACATACACGACATATTGCATGGCCTGGGAATTATGGAATGGAGGAAGTATATGTGGATCGC
131 CATGACATACACGACATATTGCATGGCCTGGGAATTATGGAATGGAGGAAGTATATGTGAATCGC
46282148 ATAGTTTCTTGACGACCGTGGATCCATCGACGGCTGTTAAGCCTAAT
196 ATAGTTTCTTGACGACCGTGGATCCATCGACGGCTGTTAAGCCTAAT
*
46282195 ATTTGATTATGAAAGTATGACTGCGTTTTAATTGACTTGACTGTGGTTGTATGACTGATATGCTC
1 ATTTGATTATGAAAGTATGACTGCGTTTTAATTGACTTGACTGTGGTTGTATGACTGACATGCTC
*
46282260 TTAATATCTTTTTTAAAATACTGTTATTGAGTACGGCCATTCTGCATACACGTGTGATGATTGAG
66 TTAATATCTTTTTTAAAAGACTGTTATTGAGTACGGCCATTCTGCATACACGTGTGATGATTGAG
*
46282325 CATGACATACACGACATATTGCATGGGCTGGGAATTATGGAATGGAGGAAGTATATGTGAATCGC
131 CATGACATACACGACATATTGCATGGCCTGGGAATTATGGAATGGAGGAAGTATATGTGAATCGC
46282390 ATAGTTTCTTGACGACCGTGGATCCATCGACGGCTGTTAAGCCTAAT
196 ATAGTTTCTTGACGACCGTGGATCCATCGACGGCTGTTAAGCCTAAT
46282437 ATTTGATTA
1 ATTTGATTA
46282446 GCAGCTTGTT
Statistics
Matches: 247, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
242 247 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (242 bp):
ATTTGATTATGAAAGTATGACTGCGTTTTAATTGACTTGACTGTGGTTGTATGACTGACATGCTC
TTAATATCTTTTTTAAAAGACTGTTATTGAGTACGGCCATTCTGCATACACGTGTGATGATTGAG
CATGACATACACGACATATTGCATGGCCTGGGAATTATGGAATGGAGGAAGTATATGTGAATCGC
ATAGTTTCTTGACGACCGTGGATCCATCGACGGCTGTTAAGCCTAAT
Found at i:46284169 original size:40 final size:40
Alignment explanation
Indices: 46284100--46284324 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
46284090 AAACCAAGTA
* * * *
46284100 CCTTAGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
46284139 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
46284179 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
46284219 CCTTCGGGACTTAGCCC-AAGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAG-TA--ACTCGCACAAATG
*
46284262 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
46284302 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
46284325 CATCCGAATA
Statistics
Matches: 158, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 12 0.08
40 110 0.70
42 1 0.01
43 34 0.22
44 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:46284278 original size:83 final size:80
Alignment explanation
Indices: 46284125--46284324 Score: 258
Period size: 83 Copynumber: 2.5 Consensus size: 80
46284115 CGGATATCGC
* * * * * *
46284125 AACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATGCCTTCGGGTCT
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGAAACTCGCACAAATGCCTTCGGGACT
46284190 TAGCCCGGAAATAGT
66 TAGCCCGGAAATAGT
*
46284205 CACTAGCACAAATGCCTTCGGGACTTAGCCCA-AGTATAGCAACTACTCGCACAAATGCCTTCGG
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCAGA-TATAG-AA--ACTCGCACAAATGCCTTCGG
*
46284269 GACTTAGCCCGGATATAGT
62 GACTTAGCCCGGAAATAGT
* * *
46284288 AACTTGCACAAATGCCTTCAGGACTTAGCCCGGATAT
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCAGATAT
46284325 CATCCGAATA
Statistics
Matches: 103, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
79 1 0.01
80 33 0.32
81 1 0.01
83 67 0.65
84 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (80 bp):
AACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGAAACTCGCACAAATGCCTTCGGGACT
TAGCCCGGAAATAGT
Found at i:46287698 original size:14 final size:15
Alignment explanation
Indices: 46287670--46287699 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46287660 TACCCTGAAT
46287670 TTGGGCCTATGAGTA
1 TTGGGCCTATGAGTA
46287685 TTGGGCCT-TGAGTA
1 TTGGGCCTATGAGTA
46287699 T
1 T
46287700 GGGTCTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (15 bp):
TTGGGCCTATGAGTA
Found at i:46289811 original size:26 final size:27
Alignment explanation
Indices: 46289782--46289905 Score: 103
Period size: 27 Copynumber: 4.6 Consensus size: 27
46289772 TTAGTTTACC
46289782 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACTGAAATACCCCCAGTTTGTA
* * *
46289808 AAATTAC-CAAAGTACCCTCAGTTTATA
1 AAATTACTGAAA-TACCCCCAGTTTGTA
** * **
46289835 AAATTACCCAAATATCTTC-GATTTGTA
1 AAATTACTGAAATACCCCCAG-TTTGTA
* *
46289862 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACT-GAAATACCCCCAGTTTGTA
46289889 AAATTACTGAAATACCC
1 AAATTACTGAAATACCC
46289906 TCGACATGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
25 3 0.04
26 16 0.20
27 55 0.69
28 6 0.08
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCCCAGTTTGTA
Found at i:46289842 original size:27 final size:26
Alignment explanation
Indices: 46289803--46289936 Score: 110
Period size: 27 Copynumber: 5.0 Consensus size: 26
46289793 ATACCCCCAG
46289803 TTGTAAAATTACCAAAGTACCCTC-AGT
1 TTGTAAAATTACCAAA-TACCCTCGA-T
* * *
46289830 TTATAAAATTACCCAAATATCTTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
*
46289857 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTA-CCAAATACCCTCGA-T
* * *
46289884 TTGCAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
46289911 ATGTAAAATTATCAAAGTACCCTCGA
1 TTGTAAAATTACCAAA-TACCCTCGA
46289937 ATTACAAAAT
Statistics
Matches: 87, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
26 5 0.06
27 75 0.86
28 7 0.08
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:46289945 original size:27 final size:26
Alignment explanation
Indices: 46289861--46289948 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 26
46289851 TTCGATTTGT
**
46289861 AAAATTATCGAAATACCCTC-AGTTTGC
1 AAAATTATC-AAATACCCTCGACATT-C
*
46289888 AAAATTACTGAAATACCCTCGACATGT-
1 AAAATTA-TCAAATACCCTCGACAT-TC
46289915 AAAATTATCAAAGTACCCTCGA-ATTAC
1 AAAATTATCAAA-TACCCTCGACATT-C
46289942 AAAATTA
1 AAAATTA
46289949 CTGTTTTACC
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
25 1 0.02
26 6 0.12
27 40 0.78
28 3 0.06
29 1 0.02
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.27
Consensus pattern (26 bp):
AAAATTATCAAATACCCTCGACATTC
Found at i:46289950 original size:54 final size:54
Alignment explanation
Indices: 46289774--46289951 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 54
46289764 AGAATACTTT
* * * *
46289774 AGTTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTC
* ** * * *
46289827 AGTTTATAAAATTACCCAAATATCTTCGATTTGTAAAATTATCGAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTATC-AAAGTACCCTC
* *
46289881 AGTTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTC
*
46289935 -GAATTACAAAATTACTG
1 AG-TTTACAAAATTACTG
46289952 TTTTACCCTC
Statistics
Matches: 102, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
53 23 0.23
54 76 0.75
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTC
Found at i:46289958 original size:27 final size:27
Alignment explanation
Indices: 46289928--46290122 Score: 255
Period size: 27 Copynumber: 7.2 Consensus size: 27
46289918 ATTATCAAAG
* *
46289928 TACCCTCGAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * **
46289955 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
46289982 TACCATTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
46290009 TACCCTCAATTGACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
46290036 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
46290063 TACCCTCGATTTAGAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
46290090 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
46290117 TACCCT
1 TACCCT
46290123 TAGGGTGTTA
Statistics
Matches: 146, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:46291786 original size:93 final size:93
Alignment explanation
Indices: 46291674--46291843 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
46291664 CCCATAAGCT
* *
46291674 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
46291739 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
46291767 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
46291832 GAGTTCGGATGC
66 GAGTTCGGATGC
46291844 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:46291840 original size:46 final size:46
Alignment explanation
Indices: 46291665--46291840 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
46291655 TGTAACCCGC
* * *
46291665 CCATAAGCT-AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAG-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
46291711 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
46291761 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
46291804 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
46291841 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46299048 original size:93 final size:93
Alignment explanation
Indices: 46298936--46299105 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
46298926 CCCATAAGCT
* *
46298936 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
46299001 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
46299029 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
46299094 GAGTTCGGATGC
66 GAGTTCGGATGC
46299106 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:46299102 original size:46 final size:46
Alignment explanation
Indices: 46298927--46299102 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
46298917 TGTAACCCGC
* * *
46298927 CCATAAGCT-AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAG-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
46298973 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
46299023 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
46299066 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
46299103 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46300456 original size:26 final size:27
Alignment explanation
Indices: 46300427--46300486 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
46300417 CCACATCTAT
*
46300427 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
46300453 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
46300480 ATATCTG
1 ATATCTG
46300487 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:46300668 original size:25 final size:25
Alignment explanation
Indices: 46300640--46300702 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
46300630 ATACTGATTA
*
46300640 TGATTCTAATTCTGTCACCTAATTC
1 TGATTCTGATTCTGTCACCTAATTC
*
46300665 TGATTCTGATTCTGTCACCTGATTC
1 TGATTCTGATTCTGTCACCTAATTC
46300690 TGATTCTGATTCT
1 TGATTCTGATTCT
46300703 CATTTTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (25 bp):
TGATTCTGATTCTGTCACCTAATTC
Found at i:46300670 original size:6 final size:6
Alignment explanation
Indices: 46300661--46300723 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
46300651 CTGTCACCTA
* * *
46300661 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
46300710 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
46300724 AATGTTTCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 2 0.04
6 39 0.85
7 4 0.09
8 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:46300696 original size:31 final size:30
Alignment explanation
Indices: 46300605--46300702 Score: 98
Period size: 31 Copynumber: 3.4 Consensus size: 30
46300595 TTGCATTCAC
* * *
46300605 ATTCTTATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGAT-CTG
* *
46300636 ATTATGATTCTAATTCTGTCACCT-A----
1 ATTCTGATTCTGATTCTGTCACCTGATCTG
46300661 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGA-TCTG
46300692 ATTCTGATTCT
1 ATTCTGATTCT
46300703 CATTTTGATT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
25 22 0.41
26 1 0.02
30 1 0.02
31 30 0.56
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTGATCTG
Found at i:46301524 original size:81 final size:80
Alignment explanation
Indices: 46301342--46301835 Score: 514
Period size: 81 Copynumber: 6.1 Consensus size: 80
46301332 TGTTACAATC
** * * * * * *
46301342 GAAATACTATCAATTTGCAAAATTACTGAAATACCCTTGATTTGTAATATTAC-AGAAATATCAT
1 GAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACTA-AAATA-CCT
* *
46301406 TGA-TTCTAAAATTACT
64 TTATTTGTAAAATTACT
* *
46301422 GAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCAATTTGTAAAGTTACTAAAATACCTTT
1 GAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACTAAAATACCTTT
46301487 ACTTTGTAAAATTACT
66 A-TTTGTAAAATTACT
* * ** * * *
46301503 GAAATACCCCCAATTTATAAAATTACTAAAATACCCTCGATTTGTAAAATTATTGAAATACCCTT
1 GAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACTAAAATA-CCTT
* *
46301568 AATTTGTAAAATTACC
65 TATTTGTAAAATTACT
*** * * * *
46301584 GAAATACCCTCAA-TTGTAAAATTATAAAAATACCCTTGATTTGTAAAATTACTAAAACACCCTC
1 GAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACTAAAATA-CCTT
*
46301648 TATTTGTAAAATTACC
65 TATTTGTAAAATTACT
* * * *
46301664 AAAACACCCTCGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTACTAAAATACCCTT
1 GAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACTAAAATA-CCTT
*
46301729 GATTTGTAAAATTA-T
65 TATTTGTAAAATTACT
* *
46301744 CGAAATACCCTCGATTTGTAAAATTACCGAAACATCCCT-GATTTGTAAAATTA-TCGAAATACC
1 -GAAATACCCTCAATTTGTAAAATTACCGAAACA-CCCTCGATTTGTAAAATTACT-AAAATACC
* *
46301807 TTTGTAGTGTAAAATTACT
63 TTTAT-TTGTAAAATTACT
46301826 GAAATACCCT
1 GAAATACCCT
46301836 TGTAGTGTAA
Statistics
Matches: 353, Mismatches: 51, Indels: 19
0.83 0.12 0.04
Matches are distributed among these distances:
79 4 0.01
80 123 0.35
81 216 0.61
82 10 0.03
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.33
Consensus pattern (80 bp):
GAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACTAAAATACCTTT
ATTTGTAAAATTACT
Found at i:46301848 original size:27 final size:27
Alignment explanation
Indices: 46301354--46301837 Score: 457
Period size: 27 Copynumber: 18.0 Consensus size: 27
46301344 AATACTATCA
*
46301354 ATTTGCAAAATTACTGAAATACCCTTG
1 ATTTGTAAAATTACTGAAATACCCTTG
* * * *
46301381 ATTTGTAATATTACAGAAATATCATTG
1 ATTTGTAAAATTACTGAAATACCCTTG
* **
46301408 A-TTCTAAAATTACTGAAATACCCTCA
1 ATTTGTAAAATTACTGAAATACCCTTG
* * **
46301434 ATTTGTAAAATTACCGAAACACCCTCA
1 ATTTGTAAAATTACTGAAATACCCTTG
* * *
46301461 ATTTGTAAAGTTACTAAAATA-CCTTT
1 ATTTGTAAAATTACTGAAATACCCTTG
***
46301487 ACTTTGTAAAATTACTGAAATACCCCCA
1 A-TTTGTAAAATTACTGAAATACCCTTG
* * *
46301515 ATTTATAAAATTACTAAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCCTTG
* *
46301542 ATTTGTAAAATTATTGAAATACCCTTA
1 ATTTGTAAAATTACTGAAATACCCTTG
* *
46301569 ATTTGTAAAATTACCGAAATACCC-TC
1 ATTTGTAAAATTACTGAAATACCCTTG
* *
46301595 AATTGTAAAATTA-TAAAAATACCCTTG
1 ATTTGTAAAATTACT-GAAATACCCTTG
* *
46301622 ATTTGTAAAATTACTAAAACACCCTCT-
1 ATTTGTAAAATTACTGAAATACCCT-TG
** * *
46301649 ATTTGTAAAATTACCAAAACACCCTCG
1 ATTTGTAAAATTACTGAAATACCCTTG
* *
46301676 ATTTGTAAAATTA-TCGAAACACCCTCG
1 ATTTGTAAAATTACT-GAAATACCCTTG
*
46301703 ATTTGTAAAATTACTAAAATACCCTTG
1 ATTTGTAAAATTACTGAAATACCCTTG
*
46301730 ATTTGTAAAATTA-TCGAAATACCCTCG
1 ATTTGTAAAATTACT-GAAATACCCTTG
* *
46301757 ATTTGTAAAATTACCGAAACATCCC-TG
1 ATTTGTAAAATTACTGAAATA-CCCTTG
*
46301784 ATTTGTAAAATTA-TCGAAATACCTTTG
1 ATTTGTAAAATTACT-GAAATACCCTTG
*
46301811 -TAGTGTAAAATTACTGAAATACCCTTG
1 AT-TTGTAAAATTACTGAAATACCCTTG
46301838 TAGTGTAAAA
Statistics
Matches: 379, Mismatches: 61, Indels: 34
0.80 0.13 0.07
Matches are distributed among these distances:
26 48 0.13
27 321 0.85
28 10 0.03
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCCTTG
Found at i:46301862 original size:27 final size:27
Alignment explanation
Indices: 46301799--46301879 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
46301789 TAAAATTATC
* *
46301799 GAAATACCTTTGTAGTGTAAAATTACT
1 GAAATACCCTTGTAGTGTAAAATGACT
46301826 GAAATACCCTTGTAGTGTAAAATGAC-
1 GAAATACCCTTGTAGTGTAAAATGACT
* * * *
46301852 GACATACCCCTATAGGGTAAAATGACT
1 GAAATACCCTTGTAGTGTAAAATGACT
46301879 G
1 G
46301880 TTTTGCCCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 22 0.47
27 25 0.53
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (27 bp):
GAAATACCCTTGTAGTGTAAAATGACT
Found at i:46301871 original size:26 final size:27
Alignment explanation
Indices: 46301815--46301879 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
46301805 CCTTTGTAGT
* * * *
46301815 GTAAAATTACTGAAATACCCTTGTAGT
1 GTAAAATGACTGAAATACCCCTATAGG
*
46301842 GTAAAATGAC-GACATACCCCTATAGG
1 GTAAAATGACTGAAATACCCCTATAGG
46301868 GTAAAATGACTG
1 GTAAAATGACTG
46301880 TTTTGCCCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAAAATGACTGAAATACCCCTATAGG
Found at i:46302351 original size:11 final size:11
Alignment explanation
Indices: 46302335--46302360 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
46302325 ATTGCATGTA
46302335 TGATATTATTG
1 TGATATTATTG
46302346 TGATATTATTG
1 TGATATTATTG
46302357 TGAT
1 TGAT
46302361 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:46307774 original size:45 final size:42
Alignment explanation
Indices: 46307676--46307774 Score: 103
Period size: 41 Copynumber: 2.3 Consensus size: 42
46307666 ATGCTATCTC
* *
46307676 ATATCGATGCCACTGTCACAGACAGGGTCTTACACGAATCAA
1 ATATCGATGCCAATGTCACAGACAGGGTCTTACACGAACCAA
* * *
46307718 ATA-CGATGCCAATGTC-CTAGGCATGGTCTTACAGGTAACCACA
1 ATATCGATGCCAATGTCAC-AGACAGGGTCTTACACG-AACCA-A
46307761 TATATCGATGCCAA
1 -ATATCGATGCCAA
46307775 CATCCTAGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
40 1 0.02
41 26 0.55
42 7 0.15
43 1 0.02
44 3 0.06
45 9 0.19
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
ATATCGATGCCAATGTCACAGACAGGGTCTTACACGAACCAA
Found at i:46318353 original size:18 final size:18
Alignment explanation
Indices: 46318330--46318378 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
46318320 CTTGGCCCAT
*
46318330 TGCAGTAACAATAGGCAG
1 TGCAGTAACAATAAGCAG
* * *
46318348 TGCAGTAATAGTAATCAG
1 TGCAGTAACAATAAGCAG
46318366 TGCAGTAACAATA
1 TGCAGTAACAATA
46318379 TACAAGTCCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAATAAGCAG
Found at i:46318431 original size:23 final size:24
Alignment explanation
Indices: 46318391--46318435 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
46318381 CAAGTCCTAC
*
46318391 CCATCTAGCCTCTACACTCCATCT
1 CCATCTAACCTCTACACTCCATCT
46318415 CCATCTAACC-CTACACTCCAT
1 CCATCTAACCTCTACACTCCAT
46318436 GTGGGGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.24, C:0.47, G:0.02, T:0.27
Consensus pattern (24 bp):
CCATCTAACCTCTACACTCCATCT
Found at i:46318899 original size:27 final size:27
Alignment explanation
Indices: 46318688--46318891 Score: 270
Period size: 27 Copynumber: 7.6 Consensus size: 27
46318678 ATACACACAT
*
46318688 CACATAAGGGCAAAATAGTCATCTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
46318715 CA-TTAAGGGCAAAACAGT-ATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
46318740 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
46318767 CACATAGGGGAAAAAGAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
46318794 CACAAAAGGGAAAAACA-TCCATTTTAC
1 CACATAAGGGCAAAATAGT-CATTTTAC
*
46318821 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
46318848 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
46318875 CACATAATGACAAAATA
1 CACATAAGGGCAAAATA
46318892 ATAATTTTGA
Statistics
Matches: 157, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
25 8 0.05
26 29 0.18
27 119 0.76
28 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Done.