Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 139 of 344
Found at i:46655890 original size:42 final size:41
Alignment explanation
Indices: 46655789--46655947 Score: 126
Period size: 42 Copynumber: 3.8 Consensus size: 41
46655779 TATATAATGC
* * *** *
46655789 TGTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCA
1 TGTCCCAAACATGGTCTTACACAAAATCAAA-AGCGATGCCA
* * *
46655831 CTGTCCCAGACAGGGTCTTACACAAAATCAGATA-CGATGCCGA
1 -TGTCCCAAACATGGTCTTACACAAAATCA-AAAGCGATGCC-A
46655874 TGTCCCAAACATGGTCTTACACTTAAAA-CAAAAGTCGATGCCAA
1 TGTCCCAAACATGGTCTTACAC--AAAATCAAAAG-CGATGCC-A
* *
46655918 TGTCCCAAACTTGGT-TTACATAAAATCAAA
1 TGTCCCAAACATGGTCTTACACAAAATCAAA
46655948 TAATGGAATC
Statistics
Matches: 97, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
41 4 0.04
42 33 0.34
43 33 0.34
44 27 0.28
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (41 bp):
TGTCCCAAACATGGTCTTACACAAAATCAAAAGCGATGCCA
Found at i:46655937 original size:85 final size:85
Alignment explanation
Indices: 46655789--46655945 Score: 194
Period size: 85 Copynumber: 1.8 Consensus size: 85
46655779 TATATAATGC
* * * * *
46655789 TGTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGACAGGGTCTTACAC
1 TGTCCCAAACATGGTCTTACATGTAAACAAACATCGATGCCAATGTCCCAAACAGGGTCTTACAC
46655854 AAAATCAGATACGATGCCGA
66 AAAATCAGATACGATGCCGA
**
46655874 TGTCCCAAACATGGTCTTACACT-TAAAACAAA-AGTCGATGCCAATGTCCCAAACTTGGT-TTA
1 TGTCCCAAACATGGTCTTACA-TGT-AAACAAACA-TCGATGCCAATGTCCCAAACAGGGTCTTA
*
46655936 CATAAAATCA
63 CACAAAATCA
46655946 AATAATGGAA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
85 33 0.54
86 28 0.46
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
TGTCCCAAACATGGTCTTACATGTAAACAAACATCGATGCCAATGTCCCAAACAGGGTCTTACAC
AAAATCAGATACGATGCCGA
Found at i:46658994 original size:27 final size:27
Alignment explanation
Indices: 46658964--46659067 Score: 131
Period size: 27 Copynumber: 3.8 Consensus size: 27
46658954 CTGCCAGAAT
* *
46658964 AGATATTGTGACAGAGTCACCAAATAC
1 AGATATTGTGGCAGAGCCACCAAATAC
*
46658991 AGATATTGTGGCAGAGCCGCCAGAA-AC
1 AGATATTGTGGCAGAGCCACCA-AATAC
*
46659018 AGATATTTGTGGCAGAGCCACCATAT-C
1 AGATA-TTGTGGCAGAGCCACCAAATAC
46659045 AGATATTGGTGGCAGAGCCACCA
1 AGATATT-GTGGCAGAGCCACCA
46659068 GAACGCTTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 2 0.03
27 48 0.71
28 18 0.26
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
AGATATTGTGGCAGAGCCACCAAATAC
Found at i:46659051 original size:54 final size:55
Alignment explanation
Indices: 46658956--46659070 Score: 155
Period size: 55 Copynumber: 2.1 Consensus size: 55
46658946 CAGCATGGCT
* *
46658956 GCCAG-AATAGATATTGTGACAGAGTCACCAAATACAGATATT-GTGGCAGAGCC
1 GCCAGAAACAGATATTGTGACAGAGCCACCAAATACAGATATTGGTGGCAGAGCC
* *
46659009 GCCAGAAACAGATATTTGTGGCAGAGCCACCATAT-CAGATATTGGTGGCAGAGCC
1 GCCAGAAACAGATA-TTGTGACAGAGCCACCAAATACAGATATTGGTGGCAGAGCC
*
46659064 ACCAGAA
1 GCCAGAA
46659071 CGCTTCCTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 5 0.09
54 15 0.28
55 34 0.63
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (55 bp):
GCCAGAAACAGATATTGTGACAGAGCCACCAAATACAGATATTGGTGGCAGAGCC
Found at i:46664725 original size:25 final size:25
Alignment explanation
Indices: 46664688--46664790 Score: 102
Period size: 25 Copynumber: 4.1 Consensus size: 25
46664678 TCATTAGTGT
* * *
46664688 TACCAATTTATAGCTCGTGAGAGCA
1 TACCGATTCATAGCTCGTAAGAGCA
* *
46664713 TACCGATTCATAGCTCATGAGAGCA
1 TACCGATTCATAGCTCGTAAGAGCA
* *
46664738 TACCGA-TCTTCAGCTC-AAATGAGCA
1 TACCGATTCAT-AGCTCGTAA-GAGCA
*
46664763 TACCGATTCATAGCTTGTAAGAGCA
1 TACCGATTCATAGCTCGTAAGAGCA
46664788 TAC
1 TAC
46664791 ATGTACATAA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
24 4 0.06
25 56 0.86
26 5 0.08
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (25 bp):
TACCGATTCATAGCTCGTAAGAGCA
Found at i:46675193 original size:27 final size:25
Alignment explanation
Indices: 46675145--46675203 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 25
46675135 GCGAGGCTGC
*
46675145 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACC-GA-A
* * *
46675172 CAGATATTGTGGCTAGGCCACCGAA
1 CAGATATTGTGACGAAGCCACCGAA
46675197 CAGATAT
1 CAGATAT
46675204 ATATATATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.29
26 2 0.07
27 18 0.64
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (25 bp):
CAGATATTGTGACGAAGCCACCGAA
Found at i:46675216 original size:32 final size:31
Alignment explanation
Indices: 46675166--46675225 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
46675156 ACGAAGTCAC
* *
46675166 CAGATACAGATATTGTGGCTAGGCCACCGAA
1 CAGATACAGATATTGTGGCGAAGCCACCGAA
* *
46675197 CAGATATATATATATGTGGCGAAGCCACC
1 CAGATACAGATAT-TGTGGCGAAGCCACC
46675226 AAATTACAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 11 0.46
32 13 0.54
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (31 bp):
CAGATACAGATATTGTGGCGAAGCCACCGAA
Found at i:46686847 original size:181 final size:181
Alignment explanation
Indices: 46686543--46686902 Score: 661
Period size: 181 Copynumber: 2.0 Consensus size: 181
46686533 GGCACAAGGC
46686543 CTAGCCACATGGCTGTGTGACCCCTGTATCAAAATTTTTGTAACGTTTTCCTAGACTTTGCAAAT
1 CTAGCCACATGGCTGTGTGACCCCTGTATCAAAATTTTTGTAACGTTTTCCTAGACTTTGCAAAT
*
46686608 AATTTTAATTTAGTCCCAAATTATTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGGGA
66 AATTTTAATTTAGTACCAAATTATTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGGGA
* *
46686673 TGGTGTGTGTATGTATGAATGATTTATGTTATGTTTATGATGTTGAATGTG
131 TGATGTGTGTATGTATGAATGATTTATATTATGTTTATGATGTTGAATGTG
46686724 CTAGCCACATGGCTGTGTGACCCCTGTATCAAAATTTTTGTAA-GTTTTTCCTAGACTTTGCAAA
1 CTAGCCACATGGCTGTGTGACCCCTGTATCAAAATTTTTGTAACG-TTTTCCTAGACTTTGCAAA
46686788 TAATTTTAATTTAGTACCAAA-TAGTTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGG
65 TAATTTTAATTTAGTACCAAATTA-TTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGG
46686852 GATGATGTGTGTATGTATGAATGATTTATATTATGTTTATGATGTTGAATG
129 GATGATGTGTGTATGTATGAATGATTTATATTATGTTTATGATGTTGAATG
46686903 AAATTAAGTT
Statistics
Matches: 174, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
180 3 0.02
181 171 0.98
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (181 bp):
CTAGCCACATGGCTGTGTGACCCCTGTATCAAAATTTTTGTAACGTTTTCCTAGACTTTGCAAAT
AATTTTAATTTAGTACCAAATTATTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGGGA
TGATGTGTGTATGTATGAATGATTTATATTATGTTTATGATGTTGAATGTG
Found at i:46690942 original size:2 final size:2
Alignment explanation
Indices: 46690935--46690962 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
46690925 CAAATTCATT
46690935 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
46690963 TGTATAGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:46691232 original size:39 final size:39
Alignment explanation
Indices: 46691189--46691317 Score: 195
Period size: 39 Copynumber: 3.3 Consensus size: 39
46691179 CTTTAACCCA
* ** * *
46691189 GATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTTCG
*
46691228 GATATATTTCCAGCATATAGCCTACGGACCTCATGTTCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTTCG
*
46691267 GATATATTTCCAACATATAGCCTGCGGACCTCATGTTCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTTCG
46691306 GATATATTTCCA
1 GATATATTTCCA
46691318 ATCTCATATA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (39 bp):
GATATATTTCCAGCATATAGCCTGCGGACCTCATGTTCG
Found at i:46694751 original size:23 final size:22
Alignment explanation
Indices: 46694713--46694767 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
46694703 AGTTAGAAAC
46694713 AAAG-AAATGGAAAAAA-AAAGAG
1 AAAGAAAAT-GAAAAAACAAA-AG
46694735 AAAGAAAATGAAGAAAACAAAAG
1 AAAGAAAATGAA-AAAACAAAAG
*
46694758 AAAAAAAATG
1 AAAGAAAATG
46694768 TGTCCATCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 7 0.24
23 19 0.66
24 3 0.10
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (22 bp):
AAAGAAAATGAAAAAACAAAAG
Found at i:46694756 original size:25 final size:23
Alignment explanation
Indices: 46694722--46694767 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
46694712 CAAAGAAATG
46694722 GAAAAAAAAAGAGAAAGAAAATGAA
1 GAAAAAAAAAGA-AAA-AAAATGAA
*
46694747 GAAAACAAAAGAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAATG
46694768 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (23 bp):
GAAAAAAAAAGAAAAAAAATGAA
Found at i:46695401 original size:37 final size:37
Alignment explanation
Indices: 46695360--46695447 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
46695350 AACATAGACA
46695360 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
46695397 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
46695434 TGTATGTTCGGCCA
1 TGTATGTTCGGCCA
46695448 TAGGTAGCCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (37 bp):
TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
Found at i:46696183 original size:79 final size:81
Alignment explanation
Indices: 46696046--46696228 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
46696036 TTGAATGATG
* *
46696046 TCCGGGCTAAGTCCCGAAGGCTTTGGGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
46696111 GTGCGAGTTACTA-AT
66 GTGCGAGTTACTATAA
* * * **
46696126 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGG-GCTAAGTGACCAAATCCGGACTAAGATC-CGAAGGCAT
46696188 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTATAA
* *
46696206 T-CGGGCTATGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
46696229 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 61 0.69
80 26 0.29
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:46696237 original size:40 final size:40
Alignment explanation
Indices: 46696046--46696230 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
46696036 TTGAATGATG
* * * * *
46696046 TCCGGGCTAAGTCCCGAAGGC-TTTGGGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
46696086 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46696126 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46696165 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
46696206 T-CGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46696231 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46696263 original size:79 final size:79
Alignment explanation
Indices: 46696100--46696253 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 79
46696090 GACTAAGATC
* * **
46696100 CGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAA
46696165 TCCGGGTTAAGTCT
66 TCCGGGTTAAGTCT
* *
46696179 CGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-CT
*
46696242 ATATCC-GGTTAA
63 AAATCCGGGTTAA
46696254 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
79 40 0.62
80 25 0.38
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAGTCT
Found at i:46702778 original size:23 final size:24
Alignment explanation
Indices: 46702740--46702786 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
46702730 TAATAAAGAA
*
46702740 ATGAAAAAAAAGAGAAAGAAAATG
1 ATGAAAAAAAAGAGAAAAAAAATG
*
46702764 ATGAAAACAAA-AGAAAAAAAATG
1 ATGAAAAAAAAGAGAAAAAAAATG
46702787 TGTCCATCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.72, C:0.02, G:0.17, T:0.09
Consensus pattern (24 bp):
ATGAAAAAAAAGAGAAAAAAAATG
Found at i:46703418 original size:37 final size:37
Alignment explanation
Indices: 46703377--46703464 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
46703367 AACATAGACA
46703377 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
46703414 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
46703451 TGTATGTTCGGCCA
1 TGTATGTTCGGCCA
46703465 TAGGTAGCCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (37 bp):
TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
Found at i:46704172 original size:39 final size:40
Alignment explanation
Indices: 46704064--46704248 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
46704054 TCGAATGATG
* * *
46704064 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
46704103 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46704144 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
46704183 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46704222 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46704249 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:46704270 original size:79 final size:79
Alignment explanation
Indices: 46704119--46704271 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 79
46704109 ACTAAGATCT
* **
46704119 GAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
46704184 CCGGGTTAAGTCCC
66 CCGGGTTAAGTCCC
* *
46704198 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
*
46704261 TATCC-GGTTAA
63 AATCCGGGTTAA
46704272 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAGTCCC
Found at i:46706618 original size:44 final size:45
Alignment explanation
Indices: 46706570--46706669 Score: 114
Period size: 44 Copynumber: 2.2 Consensus size: 45
46706560 TACTACCTCG
* * * * **
46706570 GGGAGATAAGAT-TCACCATCTTCAATTTGCTCTGCTACTGCTT-A
1 GGGAGATAAGATCT-ACAACCTTCAATCTGCTCCGCTACAACTTCA
*
46706614 GGGAGATAAGATCTACAACCTTCAGTCTGCTCCGCTACAACTTCA
1 GGGAGATAAGATCTACAACCTTCAATCTGCTCCGCTACAACTTCA
46706659 GGGAGATAAGA
1 GGGAGATAAGA
46706670 CTTGCTTTGA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
44 34 0.72
45 13 0.28
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (45 bp):
GGGAGATAAGATCTACAACCTTCAATCTGCTCCGCTACAACTTCA
Found at i:46706925 original size:176 final size:176
Alignment explanation
Indices: 46706674--46707197 Score: 629
Period size: 176 Copynumber: 3.0 Consensus size: 176
46706664 ATAAGACTTG
* * * * *
46706674 CTTTGATCTGCTCCACTGCAACTTCAGGGAGATAAGGTATTCAATCCTT-AGTCTCCTTCCCTGC
1 CTTTGATCTGCTCCACTGC-TC-TCAGGGAGATAAGATCTTCAAT-CTTCAGTCTGCTTCCATGC
* * *
46706738 TACCTCAAGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTAGCACAGAGAGATAAGGTTG
63 TACCTCAAGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTG
*
46706803 GTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCAT
128 GTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCAT
* * *
46706852 CTTTGATCTGCTCCACTGCTCTCAGGGAGATAAGTTCTTCGATCTTCAGTCTGCTTCCTTGCTAC
1 CTTTGATCTGCTCCACTGCTCTCAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCATGCTAC
* * * * * * * *
46706917 CACAAGAAGATAAGACTAGAATCTTTAACATGCTCTCTTGTTACCTCAAAAAGATAAGGCTGGTA
66 CTCAAGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
* * * * * *
46706982 GCTAAAATCTGCTTCCCTACCACATCGGGAAGATAACATTCACTAT
131 GCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCAT
* * * * * * * *
46707028 CTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAGTTTGCTTCCATACTA
1 CTTTGATCTGCTCCACTGCT-CTCAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCATGCTA
* * * *
46707093 CCTC-AGAAAGATAAGACTATAATTTTCAACCTACTCTCTTGCTTCCTCAGAGAGATAAGGCTGG
65 CCTCAAG-AAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGG
* *
46707157 TGGCTAAAACCTGCTCCCCTGCTACCTCGGGAAAATAAGAT
129 TGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGAT
46707198 CTAAATTCAC
Statistics
Matches: 290, Mismatches: 53, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
175 3 0.01
176 147 0.51
177 121 0.42
178 19 0.07
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (176 bp):
CTTTGATCTGCTCCACTGCTCTCAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCATGCTAC
CTCAAGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
GCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCAT
Found at i:46708443 original size:16 final size:16
Alignment explanation
Indices: 46708401--46708443 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
46708391 TTGGCCTCTC
*
46708401 TTTTTTATCTTTTTAT
1 TTTTTTATATTTTTAT
*
46708417 TTTCATT-TATTTTTAT
1 TTT-TTTATATTTTTAT
46708433 TTTTTTATATT
1 TTTTTTATATT
46708444 GGGTCTCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
15 2 0.09
16 18 0.82
17 2 0.09
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTATATTTTTAT
Found at i:46720497 original size:15 final size:16
Alignment explanation
Indices: 46720467--46720502 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
46720457 AATTAAAGGG
46720467 ATAATTGATAAATGAA
1 ATAATTGATAAATGAA
*
46720483 ATAATTGA-AATTGAA
1 ATAATTGATAAATGAA
46720498 ATAAT
1 ATAAT
46720503 GACCAAAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (16 bp):
ATAATTGATAAATGAA
Found at i:46722704 original size:24 final size:24
Alignment explanation
Indices: 46722676--46722796 Score: 100
Period size: 25 Copynumber: 4.9 Consensus size: 24
46722666 CAACTCGTAT
*
46722676 GAGCTTACCAATTACAGCTCATGA
1 GAGCTTACCGATTACAGCTCATGA
** * *
46722700 GAGCTTACCGATTGTAACTCGTGA
1 GAGCTTACCGATTACAGCTCATGA
*
46722724 GAGCTTACCGATTCTCAGCTCAT-A
1 GAGCTTACCGATT-ACAGCTCATGA
* * *
46722748 TGAGTTTACCAATTTACAGCTCGTGA
1 -GAGCTTACCGA-TTACAGCTCATGA
* *
46722774 GAGCATACCGATTCATAGCTCAT
1 GAGCTTACCGATT-ACAGCTCAT
46722797 ACGAGCATAC
Statistics
Matches: 74, Mismatches: 18, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
24 35 0.47
25 36 0.49
26 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (24 bp):
GAGCTTACCGATTACAGCTCATGA
Found at i:46724251 original size:16 final size:16
Alignment explanation
Indices: 46724230--46724260 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
46724220 TTTCAATATT
46724230 TTACAGTATGTTTATA
1 TTACAGTATGTTTATA
46724246 TTACAGTATGTTTAT
1 TTACAGTATGTTTAT
46724261 GCTAGGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (16 bp):
TTACAGTATGTTTATA
Found at i:46727695 original size:46 final size:46
Alignment explanation
Indices: 46727641--46727813 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
46727631 TGGTTGAGCA
*
46727641 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
46727687 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
46727734 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
46727780 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46727814 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:46727797 original size:93 final size:93
Alignment explanation
Indices: 46727638--46727808 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
46727628 GGATGGTTGA
* *
46727638 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
46727703 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
46727731 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
46727796 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46727809 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46729992 original size:27 final size:28
Alignment explanation
Indices: 46729883--46730005 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
46729873 GAGATTGGCG
* * * *
46729883 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
46729912 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46729940 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46729968 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46729995 CTGAGTGTGCG
1 CTAAGTGTGCG
46730006 GACTTAATAT
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.27
28 50 0.56
29 15 0.17
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:46731181 original size:54 final size:54
Alignment explanation
Indices: 46731122--46731231 Score: 220
Period size: 54 Copynumber: 2.0 Consensus size: 54
46731112 TCCGACTTTG
46731122 GAAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATTCCATATATGTACA
1 GAAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATTCCATATATGTACA
46731176 GAAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATTCCATATATGTACA
1 GAAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATTCCATATATGTACA
46731230 GA
1 GA
46731232 TTCCTCTCTG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.31
Consensus pattern (54 bp):
GAAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATTCCATATATGTACA
Found at i:46743613 original size:30 final size:30
Alignment explanation
Indices: 46743577--46743638 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
46743567 AATTGGAAGT
46743577 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
46743607 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
46743637 TT
1 TT
46743639 CGGCTACTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:46745867 original size:55 final size:54
Alignment explanation
Indices: 46745772--46745921 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
46745762 CTACTTTGTT
* ** * *
46745772 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
46745826 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
46745881 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
46745922 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:46745884 original size:27 final size:27
Alignment explanation
Indices: 46745744--46745921 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
46745734 TAAATTGTAC
46745744 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
46745771 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
46745797 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
46745825 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
46745853 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
46745880 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
46745907 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46745922 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:46745885 original size:82 final size:81
Alignment explanation
Indices: 46745745--46745900 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
46745735 AAATTGTACA
* * * *
46745745 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
46745810 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
46745826 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
46745889 TGTGCGAGTTGA
63 TGTGCGAATTGA
46745901 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:46753872 original size:55 final size:54
Alignment explanation
Indices: 46753777--46753926 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
46753767 CTACTTTGTT
* ** * *
46753777 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
46753831 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
46753886 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
46753927 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:46753889 original size:27 final size:27
Alignment explanation
Indices: 46753749--46753926 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
46753739 TAAATTGTAC
46753749 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
46753776 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
46753802 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
46753830 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
46753858 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
46753885 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
46753912 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46753927 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:46753890 original size:82 final size:81
Alignment explanation
Indices: 46753750--46753905 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
46753740 AAATTGTACA
* * * *
46753750 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
46753815 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
46753831 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
46753894 TGTGCGAGTTGA
63 TGTGCGAATTGA
46753906 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:46778115 original size:34 final size:34
Alignment explanation
Indices: 46778077--46778141 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 34
46778067 AGTAACAGTC
46778077 CAGTAACAAT-TAGGGCCTTAGCCCAATACAGTAT
1 CAGTAACAATGT-GGGCCTTAGCCCAATACAGTAT
** * *
46778111 CAGTAGTAGTGTGGGCCTTAGCCCATTACAG
1 CAGTAACAATGTGGGCCTTAGCCCAATACAG
46778142 CAATAGTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
34 25 0.96
35 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (34 bp):
CAGTAACAATGTGGGCCTTAGCCCAATACAGTAT
Found at i:46796585 original size:27 final size:27
Alignment explanation
Indices: 46796555--46796732 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
46796545 ATATTGAGCC
* *
46796555 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
46796582 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
46796609 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
46796637 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
46796664 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
46796691 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAATCA-ACT
46796718 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46796733 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46796694 original size:82 final size:81
Alignment explanation
Indices: 46796576--46796731 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
46796566 TGCTATATAA
* *
46796576 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
46796641 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
46796658 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46796722 CACTTAGTGC
65 CACTTAGTGC
46796732 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46797299 original size:13 final size:13
Alignment explanation
Indices: 46797281--46797305 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46797271 TACTAAATTT
46797281 TCATGGATTCAAG
1 TCATGGATTCAAG
46797294 TCATGGATTCAA
1 TCATGGATTCAA
46797306 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:46804480 original size:27 final size:27
Alignment explanation
Indices: 46804450--46804627 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
46804440 ATATTGAGCC
* *
46804450 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
46804477 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
46804504 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
46804532 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
46804559 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
46804586 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAATCA-ACT
46804613 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46804628 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46804589 original size:82 final size:81
Alignment explanation
Indices: 46804471--46804626 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
46804461 TGCTATATAA
* *
46804471 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
46804536 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
46804553 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46804617 CACTTAGTGC
65 CACTTAGTGC
46804627 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46805192 original size:13 final size:13
Alignment explanation
Indices: 46805174--46805198 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46805164 TACTAAATTT
46805174 TCATGGATTCAAG
1 TCATGGATTCAAG
46805187 TCATGGATTCAA
1 TCATGGATTCAA
46805199 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:46808564 original size:39 final size:40
Alignment explanation
Indices: 46808519--46808689 Score: 204
Period size: 39 Copynumber: 4.3 Consensus size: 40
46808509 GCTCCTCGTT
* * *
46808519 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
46808559 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
46808598 CGAATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
46808637 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
46808677 CAAATGCCTTCGG
1 CAAATGCCTTCGG
46808690 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 63 0.54
40 53 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:46808622 original size:79 final size:79
Alignment explanation
Indices: 46808519--46808689 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 79
46808509 GCTCCTCGTT
* * *
46808519 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTT-GTAACTCACACAAAGGCCTTCGGGACATAACCCGG
46808583 -ATTTAACAACTCGCA
65 AATTT-ACAACTCGCA
* * * * * *
46808598 CGAATGCCTTCGGGACTTAACCCGGATTTGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTGTAACTCACACAAAGGCCTTCGGGACATAACCCGGA
** *
46808663 ATTTGTATCTCGCA
66 ATTTACAACTCGCA
46808677 CAAATGCCTTCGG
1 CAAATGCCTTCGG
46808690 ATCTTAGTCC
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 9 0.12
79 64 0.83
80 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGATTTGTAACTCACACAAAGGCCTTCGGGACATAACCCGGA
ATTTACAACTCGCA
Found at i:46808751 original size:41 final size:41
Alignment explanation
Indices: 46808674--46808751 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
46808664 TTTGTATCTC
* * *
46808674 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
46808715 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
46808752 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:46815501 original size:20 final size:20
Alignment explanation
Indices: 46815476--46815514 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
46815466 ATAGTGAATT
46815476 TCCAAAGTTGGAACAGGGAA
1 TCCAAAGTTGGAACAGGGAA
46815496 TCCAAAGTTGGAACAGGGA
1 TCCAAAGTTGGAACAGGGA
46815515 TTTAACCGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15
Consensus pattern (20 bp):
TCCAAAGTTGGAACAGGGAA
Found at i:46815639 original size:40 final size:40
Alignment explanation
Indices: 46815539--46815710 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
46815529 GCTCCTCGTT
* * *
46815539 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
46815579 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
46815618 CGAATGCCTTCGGGACTTAACCCGGATTTTGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
46815658 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
46815698 CAAATGCCTTCGG
1 CAAATGCCTTCGG
46815711 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 78 0.67
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:46815772 original size:41 final size:41
Alignment explanation
Indices: 46815695--46815772 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
46815685 TTTGTATCTC
* * *
46815695 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
46815736 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
46815773 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:46840314 original size:27 final size:26
Alignment explanation
Indices: 46840270--46840360 Score: 87
Period size: 26 Copynumber: 3.5 Consensus size: 26
46840260 ATGGAGGAAG
* *
46840270 TACTG-TACTGGTGACTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
*
46840295 TCACTGTTACTGGTGGCTATGCCAGGAT
1 T-ACTGTTACTGGTGGCTATGCCA-CAT
* *
46840323 TACTGATA-TGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
*
46840349 TACTGTTTCTGG
1 TACTGTTACTGG
46840361 CAGCAATATT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
25 2 0.04
26 24 0.45
27 24 0.45
28 3 0.06
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:46841859 original size:40 final size:40
Alignment explanation
Indices: 46841793--46841926 Score: 178
Period size: 40 Copynumber: 3.4 Consensus size: 40
46841783 CGATATCTCG
* * * * * *
46841793 CACACTAAGTGCCGTACATAGTCGAAGTTATCTCAAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
* *
46841833 CACACTAAGTGTCATATATAGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
* *
46841873 CACACTAAGTGCCATATATAGCCGAAGCTATGTTGTATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
46841913 CACACTAAGTGCCA
1 CACACTAAGTGCCA
46841927 CAAATAATTG
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
Found at i:46847233 original size:9 final size:9
Alignment explanation
Indices: 46847212--46847241 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
46847202 TATCAATAGA
46847212 CATCAAGAAT
1 CATCAA-AAT
46847222 CATCAAAAT
1 CATCAAAAT
46847231 CATCAAAAT
1 CATCAAAAT
46847240 CA
1 CA
46847242 CTTTACAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 14 0.70
10 6 0.30
ACGTcount: A:0.53, C:0.23, G:0.03, T:0.20
Consensus pattern (9 bp):
CATCAAAAT
Found at i:46866781 original size:56 final size:56
Alignment explanation
Indices: 46866714--46866834 Score: 233
Period size: 56 Copynumber: 2.2 Consensus size: 56
46866704 TATTAGTTTA
46866714 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
46866770 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
46866826 TTGCCCATG
1 TTGCCCATG
46866835 ATCCCTTGCC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:46871275 original size:49 final size:49
Alignment explanation
Indices: 46871205--46871429 Score: 236
Period size: 49 Copynumber: 4.5 Consensus size: 49
46871195 TGAGGCCATG
* *
46871205 TGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
* * ** *
46871254 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CGCGATAACTTTTATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCG-GATAA--TTGGTCACA
* * * * ** *
46871305 TGTGTAGTACTAAGTGCAAGCTACTACTTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACA
* * *
46871355 CGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
* *
46871404 TGTGTAGTATTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
46871430 TGCGTACCAG
Statistics
Matches: 142, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
48 2 0.01
49 64 0.45
50 39 0.27
51 36 0.25
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
Found at i:46871394 original size:101 final size:100
Alignment explanation
Indices: 46871204--46871387 Score: 251
Period size: 100 Copynumber: 1.8 Consensus size: 100
46871194 GTGAGGCCAT
* * * *
46871204 GTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAAGCTACTACGTGCACCAGATAATTGGTCACACGTGTAGTACTAAGT
*
46871269 GCAGGCTACTATGCGTACGCGATAACTTTTATCAC
66 GCAGGCTACTACGCGTACGCGATAACTTTTATCAC
* * * ** *
46871304 GTGTGTAGTACTAAGTGCAAGCTACTACTTGTATCAGATGGTTAGGTCACGCGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAAGCTACTACGTGCACCAGATAATT-GGTCACACGTGTAGTACTAAG
*
46871369 TGCAGGCTACTACGTGTAC
65 TGCAGGCTACTACGCGTAC
46871388 TGGATAATTG
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
100 36 0.51
101 35 0.49
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAAGCTACTACGTGCACCAGATAATTGGTCACACGTGTAGTACTAAGT
GCAGGCTACTACGCGTACGCGATAACTTTTATCAC
Found at i:46877238 original size:40 final size:40
Alignment explanation
Indices: 46877183--46877411 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
46877173 GATGATAACG
*
46877183 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
* *
46877223 GGGCTAAGTCCCGAAGGTATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
* *
46877263 GGGCTAAGTCCGGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
46877303 GGGCTAAGTCCCGAAGGCATTTGTAG-GAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGT-GCGAGTGACTAAT-TCC
*
46877343 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATAT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TCC
*
46877382 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
46877412 AGCTATATCC
Statistics
Matches: 176, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
38 2 0.01
39 30 0.17
40 141 0.80
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
Found at i:46877316 original size:80 final size:80
Alignment explanation
Indices: 46877183--46877437 Score: 326
Period size: 80 Copynumber: 3.2 Consensus size: 80
46877173 GATGATAACG
* * *
46877183 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGTATTTGT-
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTA
*
46877247 GCTAGTGACTA-ATTCC
66 G-GAGTGACTATA-TCC
*
46877263 GGGCTAAGTCCGGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTA
*
46877328 GGAGTTACTATATCC
66 GGAGTGACTATATCC
**
46877343 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATAT-CGGGCTAAGTCCCGAAGGCATTTG-
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
46877405 AGCGAGT-AGCTATATCC
65 AG-GAGTGA-CTATATCC
* *
46877422 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
46877438 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
78 17 0.11
79 38 0.24
80 102 0.64
81 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTA
GGAGTGACTATATCC
Found at i:46885307 original size:40 final size:40
Alignment explanation
Indices: 46885252--46885481 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
46885242 GATGATAACG
*
46885252 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
46885292 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
46885332 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
* *
46885372 GGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCC
* *
46885412 GAGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TCC
*
46885452 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
46885482 AGCTATATCC
Statistics
Matches: 179, Mismatches: 9, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
39 4 0.02
40 173 0.97
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
Found at i:46885488 original size:40 final size:39
Alignment explanation
Indices: 46885252--46885507 Score: 331
Period size: 40 Copynumber: 6.4 Consensus size: 39
46885242 GATGATAACG
*
46885252 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTCC
*
46885292 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTCC
46885332 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTCC
*
46885372 GGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-TCC
* *
46885412 GAGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTAAT-TCC
*
46885452 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAT-TCC
* *
46885492 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
46885508 TACTTGGTTT
Statistics
Matches: 202, Mismatches: 10, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
39 19 0.09
40 181 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATTCC
Found at i:46890017 original size:48 final size:48
Alignment explanation
Indices: 46889927--46890329 Score: 262
Period size: 48 Copynumber: 8.5 Consensus size: 48
46889917 TGTGTGCTAT
* * *
46889927 TGTAAGA-CATGTCTGGAACAT-GCATCGGCCA-CATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CATTAATATGAGAGCCAG
* * *
46889973 TGTAAGACCATGTCTGGTACATGGCATCGGCATTAATACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGAGAGCCAG
* * * ** *
46890021 TGTAAGA-CATGTTTAGGACAT-GCATCGGCCTCGAGATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATG-AGAGCCAG
* *
46890067 TGTAAGA-CATGTCTGGGACAT-GCATCGGC--TACGATAT--GTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTA--ATATGAGAGCCAG
* * * *
46890111 TGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATA-GAGGTGTCAT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA-TTAATATGA-GAGCCAG
* * ** *
46890159 TGTAAGACCATGTTTGGGGCATGGCATCGGCAAGAATATGTGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATA--TGAGAGCCAG
* ** * * * ** * *
46890209 TGTAAGACCATGTATGGGGTATGGCGTTGGCCTCGATTTCGATAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATAT-GAGAGCCAG
** * *
46890258 TGTAAGACCATGTCTGGGACATGGCATCAAC-TTAAT-GGATGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGA-GAGCCAG
*
46890305 CGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
46890330 TTTAGCATTA
Statistics
Matches: 282, Mismatches: 54, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
44 11 0.04
45 14 0.05
46 67 0.24
47 56 0.20
48 68 0.24
49 32 0.11
50 32 0.11
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGAGAGCCAG
Found at i:46890069 original size:46 final size:45
Alignment explanation
Indices: 46889927--46890141 Score: 179
Period size: 46 Copynumber: 4.6 Consensus size: 45
46889917 TGTGTGCTAT
* * *
46889927 TGTAAGACATGTCTGGAACATGCATCGGCC-AC-ATTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTACGA-GAT--GTGCCAG
* * ** * *
46889973 TGTAAGACCATGTCTGGTACATGGCATCGGCATTAATACGA-GAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTACGA-GATGTGCCAG
* *
46890021 TGTAAGACATGTTTAGGACATGCATCGGCCT-CGAGATGTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGT--GCCAG
* *
46890067 TGTAAGACATGTCTGGGACATGCATCGG-CTACGATATGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGTGCCAG
46890111 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
46890142 ACGTATAGAG
Statistics
Matches: 139, Mismatches: 18, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
43 2 0.01
44 13 0.09
45 17 0.12
46 59 0.42
47 24 0.17
48 21 0.15
50 1 0.01
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGTGCCAG
Found at i:46891477 original size:20 final size:21
Alignment explanation
Indices: 46891439--46891477 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
46891429 TTATAATGAC
46891439 CACACGGGCGTGTTGCCCTTT
1 CACACGGGCGTGTTGCCCTTT
46891460 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
46891478 ATTTCAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTT
Found at i:46896997 original size:13 final size:13
Alignment explanation
Indices: 46896979--46897003 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46896969 TTTTGGACCC
46896979 CTTGTAACATGAA
1 CTTGTAACATGAA
46896992 CTTGTAACATGA
1 CTTGTAACATGA
46897004 GCTTTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
CTTGTAACATGAA
Found at i:46897917 original size:46 final size:49
Alignment explanation
Indices: 46897819--46898036 Score: 205
Period size: 46 Copynumber: 4.7 Consensus size: 49
46897809 AGATGTAAGC
*
46897819 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATAT-G-T--
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGTGATATCGATAG
*
46897863 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-TGATAT-G-TGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTGATATCGAT-AG
* * * *
46897910 -AGCGTAAGACTATGTCTGGGACATGGCATCGGC-CTTGATTTCGATAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTGATATCGATAG
* * *
46897957 TTAGTGTAAGACCATGTCTGGGACATGGCATC-G-AC-TTA-ATGGATGAG
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTGATATCGAT-AG
46898004 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCG
46898037 ACATTATACC
Statistics
Matches: 149, Mismatches: 12, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
44 16 0.11
45 17 0.11
46 48 0.32
47 37 0.25
48 3 0.02
49 28 0.19
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTGATATCGATAG
Found at i:46897975 original size:95 final size:96
Alignment explanation
Indices: 46897856--46898036 Score: 271
Period size: 95 Copynumber: 1.9 Consensus size: 96
46897846 TCGGCTACGA
46897856 GATATGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATAT-G-TGAG-AGCGTAAG
1 GATATGTTAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTGA-ATGGATGAGCAGCGTAAG
*
46897918 ACTATGTCTGGGACATGGCATCGGCCTTGATTTC
63 ACCATGTCTGGGACATGGCATCGGCCTTGATTTC
* *
46897952 GATA-GTTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTAATGGATGAGCCAGTGTAAGAC
1 GATATGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACTGAATGGATGAG-CAGCGTAAGAC
46898016 CATGTCTGGGACATGGCATCG
65 CATGTCTGGGACATGGCATCG
46898037 ACATTATACC
Statistics
Matches: 78, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
92 2 0.03
93 5 0.06
94 5 0.06
95 33 0.42
96 33 0.42
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (96 bp):
GATATGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACTGAATGGATGAGCAGCGTAAGACC
ATGTCTGGGACATGGCATCGGCCTTGATTTC
Found at i:46901024 original size:12 final size:13
Alignment explanation
Indices: 46901007--46901035 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
46900997 ATATACATAG
46901007 TTTTCTTTTTTT-
1 TTTTCTTTTTTTC
46901019 TTTTCTTTTTTTC
1 TTTTCTTTTTTTC
46901032 TTTT
1 TTTT
46901036 AAGAACAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTCTTTTTTTC
Found at i:46901911 original size:17 final size:17
Alignment explanation
Indices: 46901889--46901921 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46901879 AAGAAGAACA
46901889 AATGAATCTTAAAAACG
1 AATGAATCTTAAAAACG
46901906 AATGAATCTTAAAAAC
1 AATGAATCTTAAAAAC
46901922 TTAATAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
AATGAATCTTAAAAACG
Found at i:46904679 original size:28 final size:28
Alignment explanation
Indices: 46904647--46904774 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
46904637 ATAGTAAGTC
*
46904647 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
46904675 CGCACACTTAGTGCCTACATAATCAAACT
1 CGCACACTTAGTG-CTATATAATCAAACT
46904704 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
46904732 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
46904761 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46904775 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46904705 original size:29 final size:28
Alignment explanation
Indices: 46904647--46904774 Score: 159
Period size: 29 Copynumber: 4.5 Consensus size: 28
46904637 ATAGTAAGTC
* *
46904647 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
46904675 CGCACACTTAGTGCCTACATAATCAAACT
1 CGCACACTTAGTG-CTACATAATCAAACT
*
46904704 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
46904732 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCTA--CATAATCAAACT
46904761 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46904775 CAATCTCATG
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
28 42 0.48
29 45 0.51
30 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:46904765 original size:57 final size:57
Alignment explanation
Indices: 46904646--46904774 Score: 181
Period size: 57 Copynumber: 2.3 Consensus size: 57
46904636 TATAGTAAGT
*
46904646 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCCTACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCCTACATAATCAAAC
* * * *
46904703 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTG-CTATGCA-ATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCCTA--CATAATCAAAC
46904760 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
46904775 CAATCTCATG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
56 3 0.05
57 59 0.92
58 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCCTACATAATCAAAC
Found at i:46909452 original size:21 final size:21
Alignment explanation
Indices: 46909428--46909484 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 21
46909418 CTTCAGTCTT
46909428 GATGATGAATCCGGCTTCTGA
1 GATGATGAATCCGGCTTCTGA
*
46909449 GATG--G-ATCTGGCTTCTGA
1 GATGATGAATCCGGCTTCTGA
*
46909467 GATGGATCAAT-CGGCTTC
1 GAT-GATGAATCCGGCTTC
46909485 CTTGGGGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
18 15 0.52
19 2 0.07
21 10 0.34
22 2 0.07
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (21 bp):
GATGATGAATCCGGCTTCTGA
Found at i:46909461 original size:18 final size:18
Alignment explanation
Indices: 46909440--46909474 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
46909430 TGATGAATCC
46909440 GGCTTCTGAGATGGATCT
1 GGCTTCTGAGATGGATCT
46909458 GGCTTCTGAGATGGATC
1 GGCTTCTGAGATGGATC
46909475 AATCGGCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.31
Consensus pattern (18 bp):
GGCTTCTGAGATGGATCT
Found at i:46910859 original size:16 final size:16
Alignment explanation
Indices: 46910838--46910926 Score: 58
Period size: 16 Copynumber: 5.5 Consensus size: 16
46910828 AAGCCTAGGG
46910838 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
* ***
46910854 GCAAAAGT-TTA-GGG
1 GCAAAAGTGTAATTAT
*
46910868 GCAAAAGTGTAATTTT
1 GCAAAAGTGTAATTAT
* *
46910884 TCCAAAGT-TCATATTAAAT
1 GCAAAAGTGT-A-ATT--AT
46910903 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
46910919 GCAAAAGT
1 GCAAAAGT
46910927 TTAGGGGCAA
Statistics
Matches: 53, Mismatches: 13, Indels: 14
0.66 0.16 0.17
Matches are distributed among these distances:
14 8 0.15
15 5 0.09
16 25 0.47
17 3 0.06
18 3 0.06
19 8 0.15
20 1 0.02
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:46910914 original size:35 final size:35
Alignment explanation
Indices: 46910868--46910969 Score: 115
Period size: 35 Copynumber: 3.1 Consensus size: 35
46910858 AAGTTTAGGG
46910868 GCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
1 GCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
* * * ***
46910903 GCAAAAGTGTAATTATGCAAAAG----T-TTAGGG
1 GCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
46910933 GCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
1 GCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
46910968 GC
1 GC
46910970 TGTTTTGATG
Statistics
Matches: 50, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
30 23 0.46
31 1 0.02
34 1 0.02
35 25 0.50
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (35 bp):
GCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
Found at i:46910942 original size:65 final size:65
Alignment explanation
Indices: 46910838--46910969 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
46910828 AAGCCTAGGG
46910838 GCAAAAGTGTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
1 GCAAAAGTGTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
46910903 GCAAAAGTGTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
1 GCAAAAGTGTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
46910968 GC
1 GC
46910970 TGTTTTGATG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (65 bp):
GCAAAAGTGTAATTATGCAAAAGTTTAGGGGCAAAAGTGTAATTTTTCCAAAGTTCATATTAAAT
Found at i:46910957 original size:30 final size:30
Alignment explanation
Indices: 46910833--46910946 Score: 129
Period size: 30 Copynumber: 3.6 Consensus size: 30
46910823 TTCCCAAGCC
46910833 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* * *
46910863 TAGGGGCAAAAGTGTAATTTTTCCAAAGTTCATAT
1 TAGGGGCAAAAGTGTAATTATGCAAAAG----T-T
***
46910898 TAAATGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
46910928 TAGGGGCAAAAGTGTAATT
1 TAGGGGCAAAAGTGTAATT
46910947 TTTCCAAAGT
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
30 42 0.63
31 1 0.01
34 1 0.01
35 23 0.34
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:46913156 original size:17 final size:16
Alignment explanation
Indices: 46913126--46913163 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
46913116 GAAAGAAAGA
46913126 AAAAATTTCCAAAAAT
1 AAAAATTTCCAAAAAT
46913142 AAAAATTTCCAAAAAT
1 AAAAATTTCCAAAAAT
46913158 AAAAAT
1 AAAAAT
46913164 AAATAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAATTTCCAAAAAT
Found at i:46917730 original size:40 final size:40
Alignment explanation
Indices: 46917632--46917894 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
46917622 TCCTCGTTCA
* * * * *
46917632 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
46917671 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46917711 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46917751 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
46917791 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * * *
46917831 AAGGCCTTC-GGATCTTGATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
46917871 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46917895 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 38 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46932152 original size:16 final size:16
Alignment explanation
Indices: 46932131--46932167 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
46932121 AAGGGAAAAG
46932131 GGGGTTCTGGTTAACA
1 GGGGTTCTGGTTAACA
46932147 GGGGTTCTGGTTAACA
1 GGGGTTCTGGTTAACA
46932163 GGGGT
1 GGGGT
46932168 CTTAAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.16, C:0.11, G:0.43, T:0.30
Consensus pattern (16 bp):
GGGGTTCTGGTTAACA
Found at i:46935989 original size:40 final size:40
Alignment explanation
Indices: 46935886--46936028 Score: 171
Period size: 40 Copynumber: 3.5 Consensus size: 40
46935876 CTCGAATGAT
* * *
46935886 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCAACTAC
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACTAA
* *
46935927 ATTCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACTAA
* * *
46935967 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAA
* *
46936007 ATCCGGGTTAAGACCCGAAGGC
1 ATCCGGGCTAAGTCCCGAAGGC
46936029 CTTGTGTGAG
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.68
41 26 0.30
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAA
Found at i:46943631 original size:40 final size:40
Alignment explanation
Indices: 46943571--46943714 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
46943561 TTACTCAATG
46943571 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
46943611 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
46943651 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
46943691 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
46943715 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 1 0.01
40 82 0.89
41 9 0.10
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:46947388 original size:17 final size:17
Alignment explanation
Indices: 46947366--46947401 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
46947356 TTTTCAAAGA
46947366 TAGATTTGAGATCAGGT
1 TAGATTTGAGATCAGGT
*
46947383 TAGATTTGAGATCGGGT
1 TAGATTTGAGATCAGGT
46947400 TA
1 TA
46947402 TTATCAGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.36
Consensus pattern (17 bp):
TAGATTTGAGATCAGGT
Found at i:46951674 original size:40 final size:40
Alignment explanation
Indices: 46951580--46951724 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
46951570 TACTCGAATG
*
46951580 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
46951621 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
46951661 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
46951701 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
46951725 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:46954284 original size:51 final size:51
Alignment explanation
Indices: 46954224--46954379 Score: 285
Period size: 51 Copynumber: 3.1 Consensus size: 51
46954214 ATTGATGTGT
*
46954224 TATATGTTCTGTAAAAGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
1 TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
46954275 TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
1 TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
* *
46954326 TATGTGTTCTGTAAATTTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
1 TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
46954377 TAT
1 TAT
46954380 GTGGTGAATG
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 102 1.00
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.53
Consensus pattern (51 bp):
TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
Found at i:46976627 original size:33 final size:34
Alignment explanation
Indices: 46976567--46976633 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
46976557 CAGTTCAACC
* *
46976567 TCAGTTAGGGCCTTAGCCCAATACAGTAATAGTA
1 TCAGTGAGGGCCTTAGCCCAATACAGTAACAGTA
*
46976601 TCAGTGAGGG-CTTAGCCC-ATCTCAGTAACAGTA
1 TCAGTGAGGGCCTTAGCCCAAT-ACAGTAACAGTA
46976634 ATAGAAATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 2 0.07
33 18 0.62
34 9 0.31
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (34 bp):
TCAGTGAGGGCCTTAGCCCAATACAGTAACAGTA
Found at i:46976928 original size:26 final size:26
Alignment explanation
Indices: 46976897--46976957 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
46976887 AACATGCTCA
*
46976897 AACAGTCATACATCACATAGGGGTAT
1 AACAGTCATACACCACATAGGGGTAT
* ** *
46976923 ATCAGTCATTTACCTCATAGGGGTAT
1 AACAGTCATACACCACATAGGGGTAT
46976949 AACAGTCAT
1 AACAGTCAT
46976958 TTCATCAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (26 bp):
AACAGTCATACACCACATAGGGGTAT
Found at i:46978267 original size:14 final size:15
Alignment explanation
Indices: 46978240--46978274 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
46978230 AGAAAGATAA
46978240 AAAAAGACCAAAAAC
1 AAAAAGACCAAAAAC
*
46978255 AAAACGACC-AAAAC
1 AAAAAGACCAAAAAC
46978269 AAAAAG
1 AAAAAG
46978275 GTTGCAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.71, C:0.20, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAGACCAAAAAC
Found at i:46985237 original size:13 final size:13
Alignment explanation
Indices: 46985184--46985242 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
46985174 TTTGGCAATT
*
46985184 CTTTTGAAAAATG
1 CTTTTGAGAAATG
* *
46985197 ATTTTGAGAAGTG
1 CTTTTGAGAAATG
*
46985210 C-TGTG-GCAAAGTG
1 CTTTTGAG-AAA-TG
46985223 CTTTTGAGAAATG
1 CTTTTGAGAAATG
46985236 CTTTTGA
1 CTTTTGA
46985243 AAAGTTTGGC
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
11 1 0.03
12 5 0.14
13 22 0.63
14 6 0.17
15 1 0.03
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.37
Consensus pattern (13 bp):
CTTTTGAGAAATG
Found at i:46985246 original size:26 final size:26
Alignment explanation
Indices: 46985184--46985247 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
46985174 TTTGGCAATT
* *
46985184 CTTTTGAAAAATGATTTTGAGAAGTG
1 CTTTTGAAAAGTGATTTTGAGAAATG
* * * *
46985210 CTGTGGCAAAGTGCTTTTGAGAAATG
1 CTTTTGAAAAGTGATTTTGAGAAATG
46985236 CTTTTGAAAAGT
1 CTTTTGAAAAGT
46985248 TTGGCTTAAA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (26 bp):
CTTTTGAAAAGTGATTTTGAGAAATG
Found at i:46985470 original size:31 final size:29
Alignment explanation
Indices: 46985420--46985478 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
46985410 TAACTTGTTG
46985420 TAAATATTTTAATATATAAAATATAAATTT
1 TAAATATTTTAATATAT-AAATATAAATTT
*
46985450 TAAATATTTTTAAGTA-ATAAATATTAATT
1 TAAATA-TTTTAA-TATATAAATATAAATT
46985479 ACTTATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 16 0.62
31 8 0.31
32 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
TAAATATTTTAATATATAAATATAAATTT
Found at i:46988622 original size:15 final size:12
Alignment explanation
Indices: 46988585--46988613 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
46988575 AGTGCATATA
46988585 TGCTTGGTTTGG
1 TGCTTGGTTTGG
46988597 TGCTTGGTTTGG
1 TGCTTGGTTTGG
46988609 TGCTT
1 TGCTT
46988614 ATAGGTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.38, T:0.52
Consensus pattern (12 bp):
TGCTTGGTTTGG
Found at i:46992641 original size:34 final size:34
Alignment explanation
Indices: 46992603--46992702 Score: 137
Period size: 34 Copynumber: 2.9 Consensus size: 34
46992593 GTCTCAATGA
* * *
46992603 GGGCCTTAGACCATTTCAGTAACAGTAGTAGTCT
1 GGGCCTAAGCCCATTTTAGTAACAGTAGTAGTCT
* *
46992637 GGGCCTAAGCCCATTTTAGTAATAGTAGCAGTCT
1 GGGCCTAAGCCCATTTTAGTAACAGTAGTAGTCT
* *
46992671 GGGCCTGAGCCCATTTTAGTAACAGTATTAGT
1 GGGCCTAAGCCCATTTTAGTAACAGTAGTAGT
46992703 ATAGTATGCA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTTAGTAACAGTAGTAGTCT
Found at i:47004816 original size:46 final size:46
Alignment explanation
Indices: 47004653--47004825 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
47004643 AACCTGCCCC
* * * *
47004653 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
47004699 TAAATGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-ATTTGCATC-CA
* *
47004750 -CA---AACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
47004792 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
47004826 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 8 0.08
44 2 0.02
46 56 0.54
47 25 0.24
49 2 0.02
50 7 0.07
51 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:47004818 original size:93 final size:93
Alignment explanation
Indices: 47004659--47004828 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
47004649 CCCCTAAGTG
* * *
47004659 AACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 AACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
47004724 GAGTTCAGATGCCTAGTTACATCTCACA
66 GAGTTCAGATGCCTAGTTACATCTCACA
* * *
47004752 AACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
*
47004817 GAGTTCGGATGC
66 GAGTTCAGATGC
47004829 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (93 bp):
AACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATCTCACA
Found at i:47008182 original size:54 final size:53
Alignment explanation
Indices: 47008065--47008240 Score: 194
Period size: 54 Copynumber: 3.3 Consensus size: 53
47008055 GAATACTTTA
* * * *
47008065 GTTTACCAAATTACTGAAATATCCTC-AGTTGTAAAATTACCAAAGTACCCTC
1 GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
* * *
47008117 GGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTC
1 -GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATC-AAAGTACCCTC
* ** * *
47008171 AGTTTGCAAAATTATTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 -GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
47008225 GATTTACAAAATTACC
1 G-TTTACAAAATTACC
47008241 ATTTTACCCT
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
53 26 0.26
54 72 0.71
55 3 0.03
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (53 bp):
GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
Found at i:47008208 original size:27 final size:27
Alignment explanation
Indices: 47008072--47008238 Score: 117
Period size: 27 Copynumber: 6.2 Consensus size: 27
47008062 TTAGTTTACC
* * *
47008072 AAATTACTGAAATATCCTC-AGTTGTA
1 AAATTATTGAAATACCCTCGATTTGTA
** * *
47008098 AAATTA-CCAAAGTACCCTCGGTTTATA
1 AAATTATTGAAA-TACCCTCGATTTGTA
*** *
47008125 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTATTGAAATACCCTCGATTTGTA
* *
47008152 AAATTATCGAAATACCCTC-AGTTTGCA
1 AAATTATTGAAATACCCTCGA-TTTGTA
**
47008179 AAATTATTGAAATACCCTCGACATGTA
1 AAATTATTGAAATACCCTCGATTTGTA
* **
47008206 AAATTA-TCAAAGTACCCTCGATTTACA
1 AAATTATTGAAA-TACCCTCGATTTGTA
47008233 AAATTA
1 AAATTA
47008239 CCATTTTACC
Statistics
Matches: 113, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
25 3 0.03
26 17 0.15
27 87 0.77
28 6 0.05
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTATTGAAATACCCTCGATTTGTA
Found at i:47008248 original size:27 final size:27
Alignment explanation
Indices: 47008218--47008390 Score: 256
Period size: 27 Copynumber: 6.4 Consensus size: 27
47008208 ATTATCAAAG
*
47008218 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
47008245 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
47008272 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
47008299 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
47008326 TACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
47008353 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
47008380 TACCCTCGATT
1 TACCCTCGATT
47008391 GTGAAATTAC
Statistics
Matches: 131, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:47008276 original size:81 final size:81
Alignment explanation
Indices: 47008191--47008374 Score: 199
Period size: 81 Copynumber: 2.3 Consensus size: 81
47008181 ATTATTGAAA
** *
47008191 TACCCTCGACATGTAAAATTA-TCAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTCGAT
1 TACCCTCGACATACAAAATTACT-AAAGTACCCTCGATTTACAAAATTACCATTTTACCCTCGAA
* *
47008255 TTACAGAATTACTGTTT
65 TTACAAAATTACTATTT
** *** * * * *
47008272 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAGTTACTATTTTACCCTTGAAT
1 TACCCTCGACATACAAAATTACTAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTCGAAT
47008337 TACAAAATTACTATTT
66 TACAAAATTACTATTT
* **
47008353 TACCCTTGATTTACAAAATTAC
1 TACCCTCGACATACAAAATTAC
47008375 CGTTTTACCC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 86 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGACATACAAAATTACTAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTCGAAT
TACAAAATTACTATTT
Found at i:47008425 original size:27 final size:27
Alignment explanation
Indices: 47008395--47008803 Score: 479
Period size: 27 Copynumber: 15.2 Consensus size: 27
47008385 TCGATTGTGA
*
47008395 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** * ** *
47008422 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
** *
47008449 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
47008476 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACTGAAATACCCCT-GTAGGGTAG
* *
47008503 AATTACCG-AATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
47008529 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
47008556 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
47008583 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
47008610 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
47008637 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
47008664 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
47008691 AATTA-TCGCAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
47008718 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
47008745 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
47008772 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
47008798 AATTAC
1 AATTAC
47008804 CATTTTGCCC
Statistics
Matches: 329, Mismatches: 44, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
26 42 0.13
27 285 0.87
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:47008507 original size:81 final size:81
Alignment explanation
Indices: 47008395--47008803 Score: 529
Period size: 81 Copynumber: 5.1 Consensus size: 81
47008385 TCGATTGTGA
* * ** * *
47008395 AATTACTGAAATACCCCTATAGGGTAGAATTACCAAAACACCCCTAGT-TTGTAAAATTACCAAA
1 AATTACTGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCT-GTAGGGTAGAATTACCGAA
*
47008459 ATACCCTTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * ** *
47008476 AATTACTAAAATA-CCCTAGTAAGGTAGAATTAC-CGAATACCTCTGTAGGGTAGAATTACCGAA
1 AATTACTGAAATACCCCTA-TAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
47008539 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * *
47008556 AATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAA
1 AATTACTGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
47008621 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
47008637 AATTACTGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTATCGCAA
1 AATTACTGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
*
47008702 TACCCCTATAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
47008718 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGA
1 AATTACTGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
* * *
47008783 TA-CCTTGTGGGGTAA
66 TACCCCTGTAGGGTAG
47008798 AATTAC
1 AATTAC
47008804 CATTTTGCCC
Statistics
Matches: 292, Mismatches: 32, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
79 2 0.01
80 81 0.28
81 209 0.72
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACTGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:47009083 original size:27 final size:26
Alignment explanation
Indices: 47009045--47009096 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
47009035 CTCGCTGCAA
*
47009045 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
47009072 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
47009097 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:47009134 original size:67 final size:67
Alignment explanation
Indices: 47009026--47009179 Score: 299
Period size: 67 Copynumber: 2.3 Consensus size: 67
47009016 GAGGAAGCAT
47009026 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
47009091 TA
66 TA
*
47009093 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTTTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
47009158 TA
66 TA
47009160 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
47009180 TTCTGTGGTG
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 86 1.00
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:47009291 original size:6 final size:6
Alignment explanation
Indices: 47009282--47009434 Score: 143
Period size: 6 Copynumber: 24.8 Consensus size: 6
47009272 TTGCATTCAC
*
47009282 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
47009331 -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * *
47009381 ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
47009430 ATTCT
1 ATTCT
47009435 AGTTATGATA
Statistics
Matches: 121, Mismatches: 14, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
5 7 0.06
6 98 0.81
7 11 0.09
8 5 0.04
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:47009317 original size:31 final size:31
Alignment explanation
Indices: 47009282--47009398 Score: 153
Period size: 31 Copynumber: 3.6 Consensus size: 31
47009272 TTGCATTCAC
47009282 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
47009313 ATTCTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTA-C-----CTGATACTG
*
47009350 GTTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
47009381 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
47009399 ATTTTGATTC
Statistics
Matches: 75, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
31 45 0.60
32 1 0.01
36 1 0.01
37 28 0.37
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:47009345 original size:37 final size:35
Alignment explanation
Indices: 47009282--47009434 Score: 154
Period size: 37 Copynumber: 4.3 Consensus size: 35
47009272 TTGCATTCAC
*
47009282 ATTCTGATTCTGATTCTGTTA-C---CTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTATCTGATTCTG
47009313 ATTCTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCT-A-TCTGATTCTG
*
47009350 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCT-AT-CTGATTCTG
* * * *
47009387 ATTCTGGTTCTGATTTTGATT-CTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTG-TTAC-CT-ATCTGATTCTG
47009424 ATTCTGATTCT
1 ATTCTGATTCT
47009435 AGTTATGATA
Statistics
Matches: 103, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
31 21 0.20
32 1 0.01
36 1 0.01
37 76 0.74
38 4 0.04
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (35 bp):
ATTCTGATTCTGATTCTGTTACCTATCTGATTCTG
Found at i:47009357 original size:43 final size:42
Alignment explanation
Indices: 47009310--47009443 Score: 153
Period size: 43 Copynumber: 3.1 Consensus size: 42
47009300 TTACCTGATA
*
47009310 CTGATTCTGATTCTGATT-CTGTTACCTAATTCTGATTCTGGTT
1 CTGATTCTGATTCTG-TTACTGATA-CTAATTCTGATTCTGGTT
*
47009353 CTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGGTT
1 CTGATTCTGATTCTGTTA-CTGATACTAATTCTGATTCTGGTT
* * * * *
47009396 CTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTAGTT
1 CTGATTCTGATTCTGTTA-CTGATACTAATTCTGATTCTGGTT
*
47009439 ATGAT
1 CTGAT
47009444 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
42 2 0.02
43 75 0.91
44 5 0.06
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (42 bp):
CTGATTCTGATTCTGTTACTGATACTAATTCTGATTCTGGTT
Found at i:47015209 original size:93 final size:93
Alignment explanation
Indices: 47015098--47015268 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
47015088 GCCCCTAAGT
* * *
47015098 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
47015163 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
47015191 GAACTCAGACTCAACTCAATGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
47015256 CGAGTTCGGATGC
66 CGAGTTCGGATGC
47015269 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:47015265 original size:46 final size:46
Alignment explanation
Indices: 47015093--47015265 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
47015083 AACCTGCCCC
* * *
47015093 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
47015139 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * * *
47015187 TCA-CGAACTCAGACTCAACTCAATGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
47015232 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
47015266 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:47015722 original size:30 final size:30
Alignment explanation
Indices: 47015688--47015747 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
47015678 ATTTAATACG
47015688 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** * *
47015718 AACTTTTGCATAATTAGACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
47015748 GGCTCAGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:47018782 original size:31 final size:30
Alignment explanation
Indices: 47018740--47018803 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
47018730 CCTTTTCATA
*
47018740 TTTTATATTTCATAACACTGGGCCGAAGCC
1 TTTTATATTTCATAACACTAGGCCGAAGCC
**
47018770 TTTTCATATTTCATATTACTAGGCCGAAGCC
1 TTTT-ATATTTCATAACACTAGGCCGAAGCC
47018801 TTT
1 TTT
47018804 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (30 bp):
TTTTATATTTCATAACACTAGGCCGAAGCC
Found at i:47019039 original size:25 final size:24
Alignment explanation
Indices: 47018995--47019165 Score: 195
Period size: 25 Copynumber: 7.0 Consensus size: 24
47018985 TTGCTTTATC
*
47018995 ATATAACTGGAGGCCT-AGCCTCTTT
1 ATATAACTGG-GGCATAAGCC-CTTT
* *
47019020 -TAGTAACTTGGGCAAAAGCCCTTT
1 ATA-TAACTGGGGCATAAGCCCTTT
*
47019044 TTATAACTGGGGCATAAGCCCTTT
1 ATATAACTGGGGCATAAGCCCTTT
*
47019068 ATCGTAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
47019093 ATCATAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
*
47019118 ATCATAACTGGGGCATAAACCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
* *
47019143 A-ATAACTAGGACATAAGCCCTTT
1 ATATAACTGGGGCATAAGCCCTTT
47019166 TGCACTTCCT
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
23 19 0.15
24 29 0.22
25 82 0.63
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (24 bp):
ATATAACTGGGGCATAAGCCCTTT
Found at i:47019237 original size:9 final size:9
Alignment explanation
Indices: 47019223--47019279 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
47019213 ATCTCATGTG
47019223 CATATCATA
1 CATATCATA
*
47019232 CATATCATGTG
1 CATATCA--TA
47019243 CATATCATA
1 CATATCATA
* *
47019252 CATGTCATGTG
1 CATATCA--TA
47019263 CATATCATA
1 CATATCATA
47019272 CATATCAT
1 CATATCAT
47019280 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:47019239 original size:20 final size:20
Alignment explanation
Indices: 47019211--47019281 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
47019201 GCATTTATGA
*
47019211 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
47019231 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
47019251 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
47019271 ACATATCATGT
1 ACATATCATGT
47019282 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:47019246 original size:11 final size:11
Alignment explanation
Indices: 47019216--47019270 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
47019206 TATGAACATC
47019216 TCATGTGCATA
1 TCATGTGCATA
*
47019227 TCA--TACATA
1 TCATGTGCATA
47019236 TCATGTGCATA
1 TCATGTGCATA
* *
47019247 TCA--TACATG
1 TCATGTGCATA
47019256 TCATGTGCATA
1 TCATGTGCATA
47019267 TCAT
1 TCAT
47019271 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:47020623 original size:27 final size:27
Alignment explanation
Indices: 47020523--47020606 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
47020513 GGGCATATTC
* *
47020523 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
47020550 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
47020577 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
47020604 GTC
1 GTC
47020607 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:47020716 original size:27 final size:27
Alignment explanation
Indices: 47020668--47020719 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
47020658 GTAAATCTAC
*
47020668 AAACCAAAGGTATTTTAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
*
47020695 AAACCAATGGTATTTCCA-TAATTTT
1 AAACCAAAGGTATTT-CAGTAATTTT
47020720 TAGAAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:47020781 original size:27 final size:27
Alignment explanation
Indices: 47020751--47020913 Score: 154
Period size: 27 Copynumber: 6.0 Consensus size: 27
47020741 GTAACTTTGT
47020751 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
47020778 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * *
47020805 AAACCAGTGGTAGTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
47020832 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
*
47020859 AAAT-TGAGGGTATTTCT-GTAATTTTAC
1 AAATCAG-GGGTATTT-TGGTAATTTTAC
* * * * *
47020886 AAACCAAGGATATTTTAGCAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
47020913 A
1 A
47020914 GACTAGGGTA
Statistics
Matches: 111, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
26 4 0.04
27 105 0.95
28 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:47020858 original size:81 final size:81
Alignment explanation
Indices: 47020756--47020950 Score: 259
Period size: 81 Copynumber: 2.4 Consensus size: 81
47020746 TTTGTAAATC
*
47020756 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTAGTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG-GATAGTT
* *
47020820 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* * *
47020837 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGATATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGATAGTTT
*
47020902 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
* * ** *
47020918 A-GGGTATTCTAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
47020951 AAACAGTAAT
Statistics
Matches: 101, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 27 0.27
81 72 0.71
82 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGATAGTTT
AGCAATTTTACAAACT
Found at i:47020880 original size:54 final size:52
Alignment explanation
Indices: 47020758--47020936 Score: 155
Period size: 54 Copynumber: 3.3 Consensus size: 52
47020748 TGTAAATCAG
* * * * *
47020758 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTAGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAA-TA
* *
47020811 GTGGTAGTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-T-A
* * * * * *
47020866 GGGTATTTCT-GTAATTTTACAAACCAAGGATATTTTAGCAATTTTACAGACTA
1 GGGTATTT-TAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA-AATA
*
47020919 GGGTATTCTAGTAATTTT
1 GGGTATTTTAGTAATTTT
47020937 GTAAATCGAG
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
52 1 0.01
53 17 0.16
54 82 0.77
55 6 0.06
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (52 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATA
Done.