Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 140 of 344
Found at i:47020934 original size:26 final size:26
Alignment explanation
Indices: 47020758--47020936 Score: 130
Period size: 27 Copynumber: 6.7 Consensus size: 26
47020748 TGTAAATCAG
* * *
47020758 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTCTAGTAATTTTACAAACT-A
* * *
47020785 GGGTATT-TCGGTAATTTCACAAACCA
1 GGGTATTCT-AGTAATTTTACAAACTA
*
47020811 GTGGTAGTT-TGGTAATTTTACAAACTA
1 G-GGTA-TTCTAGTAATTTTACAAACTA
* * *
47020838 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTCTAGTAATTTTACAAACT-A
*
47020866 GGGTATTTCT-GTAATTTTACAAACCAA
1 GGGTA-TTCTAGTAATTTTACAAA-CTA
* * * *
47020893 GGATATTTTAGCAATTTTACAGACTA
1 GGGTATTCTAGTAATTTTACAAACTA
47020919 GGGTATTCTAGTAATTTT
1 GGGTATTCTAGTAATTTT
47020937 GTAAATCGAG
Statistics
Matches: 126, Mismatches: 17, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
26 25 0.20
27 93 0.74
28 8 0.06
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
GGGTATTCTAGTAATTTTACAAACTA
Found at i:47020958 original size:27 final size:27
Alignment explanation
Indices: 47020929--47021112 Score: 235
Period size: 27 Copynumber: 6.8 Consensus size: 27
47020919 GGGTATTCTA
* *
47020929 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47020956 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47020983 GTACTTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
47021010 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47021037 GTAATTATGTAAATCG-GGGTTAAAATG
1 GTAATTCTGTAAATCGAGGG-TAAAACG
* * *
47021064 GTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
47021091 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
47021113 CTTTGGTAAT
Statistics
Matches: 140, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.02
27 134 0.96
28 3 0.02
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:47020974 original size:80 final size:81
Alignment explanation
Indices: 47020756--47020974 Score: 183
Period size: 81 Copynumber: 2.7 Consensus size: 81
47020746 TTTGTAAATC
* * * *** * * *
47020756 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATT-TCACAAACC-AGTGGTAGT
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT-ACAAACCAAG-GATATT
* *
47020819 TTGGTAATTTTACAAACT
64 TTAGCAATTTTACAAACT
* * * *** * *
47020837 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGATATTTT
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGATATTTT
*
47020902 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
** * *
47020918 A-GGGTATTCTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGG
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGG
47020975 GTAAAACGGT
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
80 44 0.37
81 71 0.60
82 3 0.03
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.37
Consensus pattern (81 bp):
AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGATATTTT
AGCAATTTTACAAACT
Found at i:47021139 original size:27 final size:27
Alignment explanation
Indices: 47021118--47021207 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
47021108 GGGTACTTTG
*
47021118 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
47021145 GTAATTTTACAAATCGATGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
47021172 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
47021199 GTAATTTTA
1 GTAATTTTA
47021208 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:47021221 original size:27 final size:27
Alignment explanation
Indices: 47021118--47021222 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
47021108 GGGTACTTTG
* *
47021118 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
47021145 GTAATTTTACAAATCGATG-GTATTTCA
1 GTAATTTTACAAA-CTAAGAGTATTTCA
* * *
47021172 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
47021199 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
47021223 CTAAACAGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
26 3 0.05
27 56 0.85
28 7 0.11
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:47024367 original size:55 final size:55
Alignment explanation
Indices: 47024306--47024482 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
47024296 ATATTAAGTC
* * *
47024306 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
47024361 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
47024416 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
47024472 CGCACACTTAG
1 CGCACACTTAG
47024483 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:47024370 original size:28 final size:27
Alignment explanation
Indices: 47024306--47024457 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
47024296 ATATTAAGTC
* *
47024306 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
47024333 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
47024361 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
47024388 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
47024416 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
47024443 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47024458 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:47031950 original size:55 final size:55
Alignment explanation
Indices: 47031889--47032040 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
47031879 ATATTAAGTC
* * *
47031889 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
47031944 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * *
47031999 CGCACACTTAGTGCTGCATATTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
47032041 GCACAATTTA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:47032043 original size:27 final size:27
Alignment explanation
Indices: 47031889--47032040 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
47031879 ATATTAAGTC
* *
47031889 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
47031916 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
47031944 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
47031971 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* * *
47031999 CGCACACTTAGTGCTGCATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
47032026 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47032041 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 66 0.56
28 51 0.44
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:47032058 original size:27 final size:27
Alignment explanation
Indices: 47031918--47032059 Score: 78
Period size: 27 Copynumber: 5.2 Consensus size: 27
47031908 AATCAACTCG
*
47031918 CACACTTAGTGCTACATAA-TC-ATACTC
1 CACACTTAGTGCTGCA-AATTCAATAC-C
* * * *
47031945 GCACACTTAGTGCTACATAGTCAACT-CG
1 -CACACTTAGTGCTGCAAATTCAA-TACC
* * *
47031973 CACACTTAGTGCTACATAGTCAA-ACTC
1 CACACTTAGTGCTGCAAATTCAATAC-C
* * *
47032000 GCACACTTAGTGCTGCATATTCAATTCG
1 -CACACTTAGTGCTGCAAATTCAATACC
*
47032028 CACACTTAGTGCTGCACAATTTAA-ACC
1 CACACTTAGTGCTGCA-AATTCAATACC
47032055 CACAC
1 CACAC
47032060 AGTTAGCGCC
Statistics
Matches: 95, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 46 0.48
28 44 0.46
29 3 0.03
30 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTGCAAATTCAATACC
Found at i:47034902 original size:31 final size:31
Alignment explanation
Indices: 47034864--47034927 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
47034854 CCTTTTCATA
*
47034864 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
47034895 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
47034926 TT
1 TT
47034928 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:47035163 original size:25 final size:23
Alignment explanation
Indices: 47035120--47035265 Score: 177
Period size: 25 Copynumber: 6.0 Consensus size: 23
47035110 TGCTTTATCA
*
47035120 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
47035144 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
47035169 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
47035192 ATCGTAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
47035219 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
47035242 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
47035265 T
1 T
47035266 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 7, Indels: 15
0.83 0.05 0.12
Matches are distributed among these distances:
23 26 0.24
24 24 0.22
25 56 0.52
26 1 0.01
27 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:47035199 original size:49 final size:48
Alignment explanation
Indices: 47035120--47035265 Score: 190
Period size: 49 Copynumber: 3.0 Consensus size: 48
47035110 TGCTTTATCA
* *
47035120 TATAACTGGAGGCCT-AGCCTCTTT-TAGTAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTAT-GTAACTGGGGCATAAGCCCTTTT
*
47035169 TATAACTGGGGCATAAGCCCTTTATCGTAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTTTAT-GTAACTGGGGCATAAGCCCTT-TT
*
47035219 TATAACTGGGGCATAAGCCCTTTA-ATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTATGTAACTGGGGCATAAGCCCTTTT
47035266 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 28 0.32
49 34 0.39
50 25 0.28
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTATGTAACTGGGGCATAAGCCCTTTT
Found at i:47035339 original size:20 final size:20
Alignment explanation
Indices: 47035311--47035381 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
47035301 GCATTTATGA
*
47035311 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
47035331 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
47035351 ACATGTCTTGTGCATATCAT
1 ACATATCATGTGCATATCAT
47035371 ACATATCATGT
1 ACATATCATGT
47035382 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:47036645 original size:25 final size:28
Alignment explanation
Indices: 47036608--47036695 Score: 98
Period size: 27 Copynumber: 3.3 Consensus size: 28
47036598 TCATACGGAA
*
47036608 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGCATATTACGGTCACTTTAC
47036633 CATACAGGG-ATATTACGGTCACTTTAC
1 CATACAGGGCATATTACGGTCACTTTAC
*
47036660 CCTACAAGGGC-T-TTACGGTCACTTTAC
1 CATAC-AGGGCATATTACGGTCACTTTAC
*
47036687 CCTACAGGG
1 CATACAGGG
47036696 GCTTTACGGT
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
25 9 0.16
26 9 0.16
27 33 0.59
28 5 0.09
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (28 bp):
CATACAGGGCATATTACGGTCACTTTAC
Found at i:47036723 original size:27 final size:27
Alignment explanation
Indices: 47036623--47036706 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
47036613 GGGCATATTC
* * *
47036623 GTCATTTTACCATACA-GGGATATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
47036650 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
47036677 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
47036704 GTC
1 GTC
47036707 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 48 0.92
28 4 0.08
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:47036816 original size:27 final size:27
Alignment explanation
Indices: 47036768--47036819 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
47036758 GTAAATCTAC
*
47036768 AAACCAAAGGTATTTTAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
*
47036795 AAACCAATGGTATTTCCA-TAATTTT
1 AAACCAAAGGTATTT-CAGTAATTTT
47036820 TAGAAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:47036881 original size:27 final size:27
Alignment explanation
Indices: 47036851--47037013 Score: 163
Period size: 27 Copynumber: 6.0 Consensus size: 27
47036841 GAAACTTTGT
47036851 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* ** *
47036878 AAAT-TGAGGGTATTTCAGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
47036905 AAACCAGTGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
47036932 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
*
47036959 AAAT-TGAGGGTATTTCT-GTAATTTTAC
1 AAATCAG-GGGTATTT-TGGTAATTTTAC
* * * *
47036986 AAACCAAGGGTATTTTAGCAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
47037013 A
1 A
47037014 GACTATGGTA
Statistics
Matches: 112, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
26 4 0.04
27 106 0.95
28 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:47036918 original size:54 final size:54
Alignment explanation
Indices: 47036859--47037050 Score: 176
Period size: 54 Copynumber: 3.6 Consensus size: 54
47036849 GTAAATCAGG
** * *
47036859 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACCGAGGGTATTTTAGTAATTTTACAAACCAGT
* * **
47036913 GGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGAG-
1 GGTATTTTGGTAATTTTACAAACCGA-GGGTATTTTAGTAATTTTACAAA-CCAGT
* * * *
47036967 GGTATTTCT-GTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACTA-T
1 GGTATTT-TGGTAATTTTACAAACCGAGGGTATTTTAGTAATTTTACAAACCAGT
* * ** *
47037020 GGTATTCTAGTAATTTTGTAAATCGAGGGTA
1 GGTATTTTGGTAATTTTACAAACCGAGGGTA
47037051 AAACAGTAAT
Statistics
Matches: 114, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
52 1 0.01
53 26 0.23
54 82 0.72
55 5 0.04
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACCGAGGGTATTTTAGTAATTTTACAAACCAGT
Found at i:47036950 original size:81 final size:81
Alignment explanation
Indices: 47036856--47037050 Score: 268
Period size: 81 Copynumber: 2.4 Consensus size: 81
47036846 TTTGTAAATC
47036856 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACC-AGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAAG-GGTATTT
* *
47036920 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* *
47036937 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTT
*
47037002 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
* * * ** *
47037018 A-TGGTATTCTAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
47037051 AAACAGTAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 26 0.25
81 74 0.73
82 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:47037058 original size:27 final size:27
Alignment explanation
Indices: 47037029--47037212 Score: 208
Period size: 27 Copynumber: 6.8 Consensus size: 27
47037019 TGGTATTCTA
* *
47037029 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47037056 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
47037083 ATACTTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47037110 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47037137 GTAATTATGTAAATCG-GGGTTAAAATG
1 GTAATTCTGTAAATCGAGGG-TAAAACG
* * *
47037164 GTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
47037191 GTAATTTTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
47037213 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
26 3 0.02
27 132 0.96
28 3 0.02
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:47037074 original size:80 final size:81
Alignment explanation
Indices: 47036856--47037077 Score: 207
Period size: 81 Copynumber: 2.8 Consensus size: 81
47036846 TTTGTAAATC
* * * ***
47036856 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATT-TCACAAACC-AGTGGTATT
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT-ACAAACCAAG-GGTATT
* *
47036919 TTGGTAATTTTACAAACT
64 TTAGCAATTTTACAAACT
* * * *** * *
47036937 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTT
*
47037002 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
* ** * *
47037018 A-TGGTATTCTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTA
47037078 AAACGATACT
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 46 0.38
81 73 0.60
82 3 0.02
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (81 bp):
AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:47037148 original size:54 final size:54
Alignment explanation
Indices: 47037029--47037212 Score: 235
Period size: 54 Copynumber: 3.4 Consensus size: 54
47037019 TGGTATTCTA
* * *
47037029 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATG
* * * *
47037083 ATACTTCTGTAAGTCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATG
* * * **
47037137 GTAATTATGTAAATCG-GGGTTAAAATGGTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTTTGTAAATCGAGGG-TAAAACGGTAATTCTGTAAATCAAGGGTAAAATG
*
47037191 GTAATTTTGTAAATCGGGGGTA
1 GTAATTTTGTAAATCGAGGGTA
47037213 CTTTGGTAAT
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 3 0.03
54 106 0.95
55 3 0.03
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATG
Found at i:47037239 original size:27 final size:27
Alignment explanation
Indices: 47037218--47037307 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
47037208 GGGTACTTTG
*
47037218 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
47037245 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
47037272 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
47037299 GTAATTTTA
1 GTAATTTTA
47037308 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:47037249 original size:54 final size:54
Alignment explanation
Indices: 47037191--47037312 Score: 131
Period size: 54 Copynumber: 2.2 Consensus size: 54
47037181 GGGTAAAATG
* * *
47037191 GTAATTTTGTAAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTGTAAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGCGTATTTCA
** * * *
47037245 GTAATTTTACAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTGTAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGCGTATTTCA
47037299 GTAATTTTAGTAAA
1 GTAATTTT-GTAAA
47037313 CTAAAGTATT
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 7 0.13
54 45 0.82
55 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGCGTATTTCA
Found at i:47037321 original size:27 final size:27
Alignment explanation
Indices: 47037218--47037322 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
47037208 GGGTACTTTG
* *
47037218 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
47037245 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
47037272 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
47037299 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
47037323 CTAAACAGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:47043011 original size:22 final size:21
Alignment explanation
Indices: 47042986--47043037 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 21
47042976 ACCTGAGAAG
47042986 AAAATCAAAAAAATAAAAATAA
1 AAAATCAAAAAAATAAAAA-AA
* ** *
47043008 AAAATTAATTAAATAAGAAAA
1 AAAATCAAAAAAATAAAAAAA
47043029 AAAA-CAAAA
1 AAAATCAAAA
47043038 TTGTAAGAAA
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 2 0.09
21 6 0.26
22 15 0.65
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (21 bp):
AAAATCAAAAAAATAAAAAAA
Found at i:47043303 original size:18 final size:17
Alignment explanation
Indices: 47043278--47043311 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
47043268 ATTAAACTAA
*
47043278 TTAACTAAATGCAAATT
1 TTAACTAAATGAAAATT
47043295 TTAACCTAAATGAAAAT
1 TTAA-CTAAATGAAAAT
47043312 AAGATGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (17 bp):
TTAACTAAATGAAAATT
Found at i:47048483 original size:25 final size:25
Alignment explanation
Indices: 47048455--47048504 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
47048445 TCTTCTCATA
* *
47048455 TCTTCACTTCTCTCTCATTTTTCTT
1 TCTTCACTTCCCTCTCATTATTCTT
* *
47048480 TCTTCATTTCCCTTTCATTATTCTT
1 TCTTCACTTCCCTCTCATTATTCTT
47048505 CATTCCCTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.10, C:0.30, G:0.00, T:0.60
Consensus pattern (25 bp):
TCTTCACTTCCCTCTCATTATTCTT
Found at i:47050944 original size:19 final size:19
Alignment explanation
Indices: 47050920--47050957 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
47050910 AGTATCGTCA
47050920 TTGGTATTCCAAGGAGAAT
1 TTGGTATTCCAAGGAGAAT
47050939 TTGGTATTCCAAGGAGAAT
1 TTGGTATTCCAAGGAGAAT
47050958 GGTAAAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (19 bp):
TTGGTATTCCAAGGAGAAT
Found at i:47051011 original size:34 final size:34
Alignment explanation
Indices: 47050963--47051037 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
47050953 AGAATGGTAA
*
47050963 AAGAGTATGAACGAGGAAAGTCCCATTGAACCTT
1 AAGAATATGAACGAGGAAAGTCCCATTGAACCTT
*
47050997 AAGAATATGAACGAGGAAAGTCCCGTTGAACCTT
1 AAGAATATGAACGAGGAAAGTCCCATTGAACCTT
*
47051031 AGGAATA
1 AAGAATA
47051038 GATTCAGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (34 bp):
AAGAATATGAACGAGGAAAGTCCCATTGAACCTT
Found at i:47051125 original size:46 final size:46
Alignment explanation
Indices: 47051058--47051231 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
47051048 TTTGGGCATT
*
47051058 CGAACTCATTGAGTAGAGTCCGAGTTCACTTATGGATGCGAACATC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* * * * *
47051104 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-ACATC
* * * *
47051151 CGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATACGAACACC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* *
47051197 CGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
47051232 GCGGTTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 61 0.59
47 32 0.31
48 2 0.02
50 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (46 bp):
CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
Found at i:47051170 original size:93 final size:93
Alignment explanation
Indices: 47051052--47051224 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
47051042 CAGATATTTG
* * * *
47051052 GGCATTCGAACTCATTGAGTAGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTAGAGTCCGAGTTCACTTATGGATACGAACACCCGAACTCATTGAG
47051117 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
47051145 GGCATCCGAACTCGTTGAGCT-GAGTCCGAGTTCACTTATGGATACGAACACCCGAGCTCATTGA
1 GGCATCCGAACTCATTGAG-TAGAGTCCGAGTTCACTTATGGATACGAACACCCGAACTCATTGA
47051209 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
47051225 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTAGAGTCCGAGTTCACTTATGGATACGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:47056816 original size:27 final size:27
Alignment explanation
Indices: 47056777--47056927 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
47056767 ATATTGAGCC
*
47056777 CGCACACTCAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
47056804 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
47056831 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
47056859 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
47056886 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
47056913 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47056928 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
27 84 0.79
28 23 0.21
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:47056889 original size:55 final size:54
Alignment explanation
Indices: 47056777--47056926 Score: 176
Period size: 55 Copynumber: 2.8 Consensus size: 54
47056767 ATATTGAGCC
* * *
47056777 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
* * ** *
47056831 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCCACATAATCAAAT
* **
47056886 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGC
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGC
47056927 TGTACAATTT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
54 38 0.46
55 45 0.54
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
Found at i:47064759 original size:27 final size:27
Alignment explanation
Indices: 47064729--47064906 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
47064719 ATATCGAGTC
* * * *
47064729 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
47064756 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
47064783 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
47064811 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
47064838 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
47064865 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
47064892 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47064907 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:47064868 original size:82 final size:81
Alignment explanation
Indices: 47064750--47064905 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
47064740 TGCTATATAA
*
47064750 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
47064815 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
47064832 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
47064896 CACTTAGTGC
65 CACTTAGTGC
47064906 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47067388 original size:14 final size:14
Alignment explanation
Indices: 47067369--47067396 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47067359 AAGGGTTTTA
47067369 AGTTAATTTCGAAT
1 AGTTAATTTCGAAT
47067383 AGTTAATTTCGAAT
1 AGTTAATTTCGAAT
47067397 TTCTAACGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
AGTTAATTTCGAAT
Found at i:47082902 original size:93 final size:93
Alignment explanation
Indices: 47082795--47082965 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
47082785 GCCCATAAGT
* *
47082795 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
47082860 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
47082888 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
47082953 CGAGTTCGGATGC
66 CGAGTTCGGATGC
47082966 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:47082962 original size:46 final size:46
Alignment explanation
Indices: 47082787--47082962 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
47082777 TGTAACCCGC
* * *
47082787 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
47082833 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
47082883 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
47082926 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
47082963 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
44 1 0.01
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:47083422 original size:30 final size:30
Alignment explanation
Indices: 47083388--47083447 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
47083378 ATTTAATACG
47083388 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
47083418 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
47083448 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:47086778 original size:45 final size:46
Alignment explanation
Indices: 47086717--47086831 Score: 124
Period size: 46 Copynumber: 2.5 Consensus size: 46
47086707 TGTGCCATGG
* *
47086717 TGTCTTTCAATAATGGTCTTATTTATTCTCT-TCTTAATGCCATAA
1 TGTCTTTCAACAATGGTCTTATTTATTCTCTGTCGTAATGCCATAA
* * * * * ** *
47086762 TGTCTTTCAACCATGGTTTTATTCATTTTTTGTCGTGTTGCCATAG
1 TGTCTTTCAACAATGGTCTTATTTATTCTCTGTCGTAATGCCATAA
*
47086808 TGTCTTTCAACTATGGTCTTATTT
1 TGTCTTTCAACAATGGTCTTATTT
47086832 CTTTGATTCA
Statistics
Matches: 56, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
45 25 0.45
46 31 0.55
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (46 bp):
TGTCTTTCAACAATGGTCTTATTTATTCTCTGTCGTAATGCCATAA
Found at i:47086903 original size:45 final size:46
Alignment explanation
Indices: 47086866--47086967 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 46
47086856 CTTTCAGCTG
*
47086866 TGGTCTTACTCTG-TAGAATCGTGATGCCATAACGTCTTTCA-ATCA
1 TGGTCTTACTC-GATAGAATCATGATGCCATAACGTCTTTCAGATCA
*
47086911 TGGTCTTACTCGATAGAATCATGATGCCATAATGTCTTTCAG-TCA
1 TGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCAGATCA
*
47086956 TGGTTTTACTCG
1 TGGTCTTACTCG
47086968 TTTCTGGTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
44 1 0.02
45 51 0.98
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (46 bp):
TGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCAGATCA
Found at i:47087033 original size:46 final size:47
Alignment explanation
Indices: 47086968--47087061 Score: 145
Period size: 46 Copynumber: 2.0 Consensus size: 47
47086958 GTTTTACTCG
* * *
47086968 TTTCTGGTATGGTGCCATAGTGTTTTTCAACTATGGTCTTATTTATT
1 TTTCTGGTATAGTGCCATAGTGTCTTTCAACTATGGTCTTAATTATT
*
47087015 TTTC-GGTATAGTGTCATAGTGTCTTTCAACTATGGTCTTAATTATT
1 TTTCTGGTATAGTGCCATAGTGTCTTTCAACTATGGTCTTAATTATT
47087061 T
1 T
47087062 CTTTCAAGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 39 0.91
47 4 0.09
ACGTcount: A:0.19, C:0.13, G:0.18, T:0.50
Consensus pattern (47 bp):
TTTCTGGTATAGTGCCATAGTGTCTTTCAACTATGGTCTTAATTATT
Found at i:47088796 original size:40 final size:42
Alignment explanation
Indices: 47088732--47088824 Score: 129
Period size: 40 Copynumber: 2.3 Consensus size: 42
47088722 CTATGTTTGT
* *
47088732 CACTTAGTGTGCATATCGAGATAGCTTCAGCTATATA-A-AG
1 CACTTAGTGTGCAAATCGAGATAGCTTCAGATATATATATAG
*
47088772 CACTTAGTGTGCAAATC-AGAATAGCTTCGGATATATATATAG
1 CACTTAGTGTGCAAATCGAG-ATAGCTTCAGATATATATATAG
47088814 CACTTAGTGTG
1 CACTTAGTGTG
47088825 TGAGACTGTG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
39 2 0.04
40 31 0.66
41 1 0.02
42 13 0.28
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (42 bp):
CACTTAGTGTGCAAATCGAGATAGCTTCAGATATATATATAG
Found at i:47088866 original size:41 final size:41
Alignment explanation
Indices: 47088813--47088906 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
47088803 TATATATATA
*
47088813 GCACTTAGTGTGTGAGACTGTGATAGCTTCGTCTATGAAAG
1 GCACTTAGTGTGTGAGACTGTGATAGCTTCGGCTATGAAAG
47088854 GCACTTAGTGTGTGAGACTGTGATAGCTTCGGCTATGAAAG
1 GCACTTAGTGTGTGAGACTGTGATAGCTTCGGCTATGAAAG
*
47088895 CCACTTAGTGTG
1 GCACTTAGTGTG
47088907 CAAGATTACA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (41 bp):
GCACTTAGTGTGTGAGACTGTGATAGCTTCGGCTATGAAAG
Found at i:47088921 original size:41 final size:40
Alignment explanation
Indices: 47088752--47088931 Score: 139
Period size: 41 Copynumber: 4.4 Consensus size: 40
47088742 GCATATCGAG
* * *
47088752 ATAGCTTCAGCTATATAAAGCACTTAGTGTGCAA-A-TCAGA
1 ATAGCTTCGGCTAT-GAAAGCACTTAGTGTGCAAGACT-ATA
* * ** * *
47088792 ATAGCTTCGGATATATATATAGCACTTAGTGTGTGAGACTGTG
1 ATAGCTTCGGCTAT-GA-A-AGCACTTAGTGTGCAAGACTATA
* ** * *
47088835 ATAGCTTCGTCTATGAAAGGCACTTAGTGTGTGAGACTGTG
1 ATAGCTTCGGCTATGAAA-GCACTTAGTGTGCAAGACTATA
* *
47088876 ATAGCTTCGGCTATGAAAGCCACTTAGTGTGCAAGATTACA
1 ATAGCTTCGGCTATGAAAG-CACTTAGTGTGCAAGACTATA
47088917 ATAGCTTCGGCTATG
1 ATAGCTTCGGCTATG
47088932 CTTTGGCACT
Statistics
Matches: 117, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
40 17 0.15
41 71 0.61
42 15 0.13
43 13 0.11
44 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (40 bp):
ATAGCTTCGGCTATGAAAGCACTTAGTGTGCAAGACTATA
Found at i:47092505 original size:27 final size:27
Alignment explanation
Indices: 47092475--47092652 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
47092465 ATATTGAGTC
* *
47092475 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
47092502 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
47092529 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
47092557 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
47092584 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
47092611 CGGACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
47092638 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47092653 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:47092618 original size:82 final size:81
Alignment explanation
Indices: 47092496--47092651 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
47092486 TGCTATATAA
* *
47092496 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
47092561 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
47092578 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGGACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
47092642 CACTTAGTGC
65 CACTTAGTGC
47092652 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47092666 original size:82 final size:83
Alignment explanation
Indices: 47092475--47092666 Score: 207
Period size: 82 Copynumber: 2.3 Consensus size: 83
47092465 ATATTGAGTC
* * * * *
47092475 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
47092539 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * ** *
47092557 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGGACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
47092618 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
*
47092638 CGCACACTTAGTGCTGTACAATTTAATTC
1 CGCACACTTAGTGCTGTACAATTCAATTC
47092667 CCGTGCACTT
Statistics
Matches: 90, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 69 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:47099223 original size:58 final size:58
Alignment explanation
Indices: 47099133--47099248 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
47099123 TAGTGCCATT
47099133 CTCTAAGGCGTACACAATATAGGGGTTATCCCAGGTTCCAACATAATCAAAAATTCTA
1 CTCTAAGGCGTACACAATATAGGGGTTATCCCAGGTTCCAACATAATCAAAAATTCTA
47099191 CTCTAAGGCGTACACAATATAGGGGTTATCCCAGGTTCCAACATAATCAAAAATTCTA
1 CTCTAAGGCGTACACAATATAGGGGTTATCCCAGGTTCCAACATAATCAAAAATTCTA
47099249 TCTCCCTCTC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (58 bp):
CTCTAAGGCGTACACAATATAGGGGTTATCCCAGGTTCCAACATAATCAAAAATTCTA
Found at i:47102230 original size:49 final size:48
Alignment explanation
Indices: 47102076--47102245 Score: 157
Period size: 49 Copynumber: 3.5 Consensus size: 48
47102066 AGATGCCGAC
* *
47102076 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATC-AGGTCGAT
* * * * * **
47102124 GACATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGACCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-AGGTCGAT
* * * *
47102173 G-CAGTGTCCTAGATAGGTCTTACACTGGCTCTCATCTATCAGTGTCGAA
1 GCCA-TGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG-GTCGAT
47102222 GCCATGTCCCAGACAGGTCTTACA
1 GCCATGTCCCAGACAGGTCTTACA
47102246 ATGACACACA
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
47 16 0.16
48 17 0.17
49 63 0.64
50 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAGGTCGAT
Found at i:47102409 original size:46 final size:46
Alignment explanation
Indices: 47102308--47102416 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
47102298 TATATCTCAA
*
47102308 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAAT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTC-TCATAAT
* ** *
47102355 -GCCAATGCATGTCTGAGACATGTCTTACACTAGCTCT-T-ATAATGT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCATAA--T
47102400 GGCCGATGCATGTCCCA
1 GGCCGATGCATGTCCCA
47102417 GATGTAACAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
43 3 0.06
44 1 0.02
45 1 0.02
46 46 0.90
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCATAAT
Found at i:47106121 original size:20 final size:20
Alignment explanation
Indices: 47106096--47106134 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
47106086 ACAACTTCAA
47106096 TTATTTTAC-ACATTTACAAC
1 TTATTTTACAAC-TTTACAAC
47106116 TTATTTTACAACTTTACAA
1 TTATTTTACAACTTTACAA
47106135 AATAGCCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATTTTACAACTTTACAAC
Found at i:47110809 original size:28 final size:29
Alignment explanation
Indices: 47110777--47110888 Score: 149
Period size: 29 Copynumber: 3.9 Consensus size: 29
47110767 TACCTGTATC
*
47110777 TGGCCCATTAAGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
47110805 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
47110834 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
47110863 TGGCCCGTTAGGCCC-AGTCACATTCA
1 TGGCCCATTAGGCCCAAATCACATTCA
47110889 ATTCATGCTC
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
28 24 0.32
29 50 0.67
30 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:47110868 original size:58 final size:57
Alignment explanation
Indices: 47110768--47110878 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 57
47110758 AAATTCACAT
* *
47110768 ACCTGTATCTGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
47110825 ACCTATATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
47110879 GTCACATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 21 0.44
58 27 0.56
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:47116694 original size:26 final size:26
Alignment explanation
Indices: 47116658--47116733 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 26
47116648 TAAAATTAAC
* *
47116658 CCTAAGGGTATATTGGTCATTTTGTA
1 CCTAGGGGTATATTGGTCATTTTCTA
* * *
47116684 CCTAGGGGTATAATGGTAATTTCCCTA
1 CCTAGGGGTATATTGGTCATTT-TCTA
* * *
47116711 CTTAGGGGTATTTTAGTCATTTT
1 CCTAGGGGTATATTGGTCATTTT
47116734 AACAATTTTC
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
26 19 0.50
27 19 0.50
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (26 bp):
CCTAGGGGTATATTGGTCATTTTCTA
Found at i:47118935 original size:32 final size:32
Alignment explanation
Indices: 47118894--47118959 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
47118884 CATGATATGA
*
47118894 AGTACTATTTCTGGGAAGAACCATACTTGTTT
1 AGTACTATTTCTAGGAAGAACCATACTTGTTT
47118926 AGTACTATTTCTAGGAAGAACCATACTTGTTT
1 AGTACTATTTCTAGGAAGAACCATACTTGTTT
47118958 AG
1 AG
47118960 AAAGTGTGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36
Consensus pattern (32 bp):
AGTACTATTTCTAGGAAGAACCATACTTGTTT
Found at i:47119762 original size:40 final size:40
Alignment explanation
Indices: 47119718--47119798 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
47119708 TAAAGCTTAC
* *
47119718 TGGATGTTAACCTTGCTAAAGAAAAATGGATGTTTCAACT
1 TGGATCTTAACCTTGCTAAAGAAAAATGGATGATTCAACT
47119758 TGGATCTTAACCTTGCTAAAGAAAAATGGATGATTCAACT
1 TGGATCTTAACCTTGCTAAAGAAAAATGGATGATTCAACT
47119798 T
1 T
47119799 AACAAGTTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (40 bp):
TGGATCTTAACCTTGCTAAAGAAAAATGGATGATTCAACT
Found at i:47120560 original size:18 final size:18
Alignment explanation
Indices: 47120534--47120568 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47120524 TAAATAGTTT
* *
47120534 ATAATTATATTTATTATA
1 ATAAATATATTAATTATA
47120552 ATAAATATATTAATTAT
1 ATAAATATATTAATTAT
47120569 TATCAACTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATAAATATATTAATTATA
Found at i:47123410 original size:27 final size:27
Alignment explanation
Indices: 47123380--47123433 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
47123370 TCATACAACC
* *
47123380 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
47123407 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
47123434 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:47125927 original size:15 final size:16
Alignment explanation
Indices: 47125908--47125952 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
47125898 AGAAGCCCAG
47125908 GATAAAGAAATCCAAT
1 GATAAAGAAATCCAAT
*
47125924 -ATAAATAAATCC-AT
1 GATAAAGAAATCCAAT
*
47125938 GATAAGGAAATCCAA
1 GATAAAGAAATCCAA
47125953 ATTACAATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 2 0.08
15 21 0.88
16 1 0.04
ACGTcount: A:0.56, C:0.13, G:0.11, T:0.20
Consensus pattern (16 bp):
GATAAAGAAATCCAAT
Found at i:47128801 original size:22 final size:22
Alignment explanation
Indices: 47128773--47128817 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
47128763 TATCTCATAG
47128773 TACGAGACTCGGATAATGCTCT
1 TACGAGACTCGGATAATGCTCT
47128795 TACGAGACTCGGATAATGCTCT
1 TACGAGACTCGGATAATGCTCT
47128817 T
1 T
47128818 GTCTCTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (22 bp):
TACGAGACTCGGATAATGCTCT
Found at i:47130030 original size:27 final size:27
Alignment explanation
Indices: 47130000--47130051 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
47129990 TCATACAATC
* *
47130000 CATGTAATAGTAATTTAACATTCAAAT
1 CATGTAACAATAATTTAACATTCAAAT
**
47130027 CATGTAACAATAATTTGTCATTCAA
1 CATGTAACAATAATTTAACATTCAA
47130052 TTTCACATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAAAT
Found at i:47133545 original size:18 final size:19
Alignment explanation
Indices: 47133504--47133545 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
47133494 TTTCAAGCAA
47133504 ACCTTGATGAATTTTTATC
1 ACCTTGATGAATTTTTATC
47133523 ACCTTGATGAATTTTTATC
1 ACCTTGATGAATTTTTATC
47133542 -CCTT
1 ACCTT
47133546 AAAACCCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.24, C:0.19, G:0.10, T:0.48
Consensus pattern (19 bp):
ACCTTGATGAATTTTTATC
Found at i:47134463 original size:21 final size:23
Alignment explanation
Indices: 47134434--47134476 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
47134424 AATTGTACTT
*
47134434 AAATCATT-AACAAATTGAATTA
1 AAATCATTAAAAAAATTGAATTA
47134456 AAAT-ATTAAAAAAATTGAATT
1 AAATCATTAAAAAAATTGAATT
47134477 TTAATTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (23 bp):
AAATCATTAAAAAAATTGAATTA
Found at i:47134511 original size:10 final size:10
Alignment explanation
Indices: 47134496--47134520 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
47134486 TTTATAATAA
47134496 ATTTTGATTT
1 ATTTTGATTT
47134506 ATTTTGATTT
1 ATTTTGATTT
47134516 ATTTT
1 ATTTT
47134521 CGACAAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:47135387 original size:20 final size:18
Alignment explanation
Indices: 47135354--47135390 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
47135344 TGTGTTGTTG
47135354 ATATGCTTAATTTAATTA
1 ATATGCTTAATTTAATTA
47135372 ATATGGCTTAAATTTAATT
1 ATAT-GCTT-AATTTAATT
47135391 CGTATTAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (18 bp):
ATATGCTTAATTTAATTA
Found at i:47138999 original size:15 final size:15
Alignment explanation
Indices: 47138979--47139010 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
47138969 TAATTTCACT
47138979 AAAACCATGTCCATA
1 AAAACCATGTCCATA
47138994 AAAACCATGTCCATA
1 AAAACCATGTCCATA
47139009 AA
1 AA
47139011 CACCCACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (15 bp):
AAAACCATGTCCATA
Found at i:47140579 original size:25 final size:24
Alignment explanation
Indices: 47140551--47140602 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
47140541 ATAGGATACT
**
47140551 TCACAACTTGAAATCTGACCCGTCC
1 TCACAACCCGAAATCTGACCC-TCC
47140576 TCACAACCCGAAATCTGACCCTCC
1 TCACAACCCGAAATCTGACCCTCC
47140600 TCA
1 TCA
47140603 AGAGGTAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.29, C:0.40, G:0.10, T:0.21
Consensus pattern (24 bp):
TCACAACCCGAAATCTGACCCTCC
Found at i:47141755 original size:22 final size:22
Alignment explanation
Indices: 47141713--47141772 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
47141703 AAATTTAGTT
*
47141713 TTTAATATTTATATTTTTTTTAG
1 TTTAAT-TTTATATTTTTTTTAA
47141736 TTTAATTTT-TATCTTTTTTTAA
1 TTTAATTTTATAT-TTTTTTTAA
*
47141758 -TTAAATTTA-ATTTTT
1 TTTAATTTTATATTTTT
47141773 AATTTTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
20 4 0.12
21 12 0.36
22 11 0.33
23 6 0.18
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTAATTTTATATTTTTTTTAA
Found at i:47141761 original size:21 final size:20
Alignment explanation
Indices: 47141711--47141772 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 20
47141701 TCAAATTTAG
47141711 TTTTTAA-T-ATTTATATTT
1 TTTTTAATTAATTTATATTT
* *
47141729 TTTTTAGTTTAATTTTTATCTT
1 TTTTTA-ATTAATTTATAT-TT
47141751 TTTTTAATTAAATTTA-ATTT
1 TTTTTAATT-AATTTATATTT
47141771 TT
1 TT
47141773 AATTTTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 6 0.17
20 5 0.14
21 11 0.31
22 13 0.37
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTTAATTAATTTATATTT
Found at i:47141925 original size:17 final size:19
Alignment explanation
Indices: 47141903--47141950 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 19
47141893 TAAATTTAAA
47141903 AAATATATAAAAATT-AA-
1 AAATATATAAAAATTCAAC
* *
47141920 ATATAT-TTAAAATTCAAC
1 AAATATATAAAAATTCAAC
47141938 AAATATATAAAAA
1 AAATATATAAAAA
47141951 ATTTATAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
16 7 0.29
17 7 0.29
18 5 0.21
19 5 0.21
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATATATAAAAATTCAAC
Found at i:47159603 original size:49 final size:49
Alignment explanation
Indices: 47159429--47160239 Score: 1122
Period size: 47 Copynumber: 16.6 Consensus size: 49
47159419 CCCTTCGGGA
* * *
47159429 CTTATCACAT-T-TATACACTTTCACATCCATCACGAT-GGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGC
* *
47159476 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47159523 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47159570 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** **
47159619 CTTATCACATATATATAGC-CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CTTATCACATATATATA-CACTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TA----G
47159683 GC
48 GC
47159685 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47159734 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47159783 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47159830 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47159877 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47159926 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47159975 CTTATCAC--ATATATACACTTCCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47160022 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47160071 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47160120 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47160167 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47160214 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
47160240 CACAATTATC
Statistics
Matches: 699, Mismatches: 35, Indels: 60
0.88 0.04 0.08
Matches are distributed among these distances:
46 3 0.00
47 319 0.46
49 312 0.45
50 5 0.01
52 2 0.00
53 1 0.00
54 2 0.00
56 3 0.00
57 8 0.01
58 8 0.01
59 3 0.00
61 2 0.00
62 1 0.00
63 2 0.00
65 5 0.01
66 23 0.03
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47159626 original size:96 final size:94
Alignment explanation
Indices: 47159429--47160239 Score: 1102
Period size: 96 Copynumber: 8.3 Consensus size: 94
47159419 CCCTTCGGGA
* * * * * *
47159429 CTTATCACATTTATACACTTTCACATCCATCACGAT-GGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGCCTTATCACATATATACA
47159493 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
*
47159523 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
47159588 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* **
47159619 CTTATCACATATATATAGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CTTATCACATATATACA--CTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT-------TAGG
47159684 CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47 CCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47159734 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
47159799 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
47159830 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
47159895 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
47159926 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
47159991 ACTTCCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
47160022 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
47160087 ACACTTTCACATTCATCACATTGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47160120 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47160185 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
47160214 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
47160240 CACAATTATC
Statistics
Matches: 651, Mismatches: 36, Indels: 60
0.87 0.05 0.08
Matches are distributed among these distances:
93 2 0.00
94 151 0.23
96 283 0.43
98 103 0.16
99 4 0.01
101 2 0.00
102 1 0.00
103 2 0.00
105 3 0.00
106 7 0.01
107 8 0.01
108 3 0.00
110 2 0.00
111 1 0.00
112 2 0.00
114 4 0.01
115 65 0.10
117 8 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:47159651 original size:17 final size:18
Alignment explanation
Indices: 47159617--47159652 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
47159607 CGGCCATTAG
47159617 GCCTTATCACATATATATA
1 GCCTTATCACA-ATATATA
47159636 GCCTTATCAC-ATATATA
1 GCCTTATCACAATATATA
47159653 CACTTTCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
19 10 0.59
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (18 bp):
GCCTTATCACAATATATA
Found at i:47159653 original size:115 final size:115
Alignment explanation
Indices: 47159521--47159750 Score: 451
Period size: 115 Copynumber: 2.0 Consensus size: 115
47159511 CGGCCATTAG
47159521 GCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 GCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
47159586 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
*
47159636 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 GCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
47159701 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
47159751 CACTTTCACA
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 114 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (115 bp):
GCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
Found at i:47159662 original size:66 final size:67
Alignment explanation
Indices: 47159568--47159701 Score: 252
Period size: 66 Copynumber: 2.0 Consensus size: 67
47159558 CGGCCATTAG
47159568 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
47159633 ATA
65 ATA
47159636 GCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
47159700 TA
66 TA
47159702 CACTTTCACA
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
66 56 0.85
68 10 0.15
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (67 bp):
GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
TA
Found at i:47159758 original size:164 final size:162
Alignment explanation
Indices: 47159480--47159797 Score: 591
Period size: 164 Copynumber: 2.0 Consensus size: 162
47159470 CTCGGCCCTG
47159480 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTC
47159545 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
47159610 CCATTAGGCCTTATCACATATATATAGCCTTA
131 CCATTAGGCCTTATCACATATATATAGCCTTA
*
47159642 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTT
*
47159707 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT
64 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
*
47159772 GGCCATTCGGCCTTATCACATATATA
129 GGCCATTAGGCCTTATCACATATATA
47159798 CACTTTCACA
Statistics
Matches: 151, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
162 50 0.33
164 101 0.67
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (162 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATATATAGCCTTA
Found at i:47159798 original size:145 final size:143
Alignment explanation
Indices: 47159636--47160239 Score: 1023
Period size: 145 Copynumber: 4.2 Consensus size: 143
47159626 CATATATATA
47159636 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
47159701 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
* *
47159766 CACATTGGCCATTCG
129 CACATCGGCCATTAG
*
47159781 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47159846 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
47159911 CATCGGCCATTAG
131 CATCGGCCATTAG
* *
47159924 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
* *
47159989 ACACTTCCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
47160054 CACATCGGCCATTAG
129 CACATCGGCCATTAG
* *
47160069 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
* *
47160134 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
47160197 CACATCGGCCATTAG
129 CACATCGGCCATTAG
* *
47160212 GCCTTATCACATATATATACATTCACAT
1 GCCTTATCACATATATACACTTTCACAT
47160240 CACAATTATC
Statistics
Matches: 443, Mismatches: 14, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
141 16 0.04
143 141 0.32
145 286 0.65
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAG
Found at i:47160129 original size:22 final size:22
Alignment explanation
Indices: 47160101--47160176 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
47160091 TTTCACATTC
47160101 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
47160123 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
47160147 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
47160170 ATCACAT
1 ATCACAT
47160177 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:47162796 original size:40 final size:40
Alignment explanation
Indices: 47162739--47162837 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
47162729 GGGGTGTCAC
* *
47162739 ATATATGGCACTCAGTGTGCGATTCAAG-AAAACTTCGACT
1 ATATTTGGCACTTAGTGTGCGATTC-AGCAAAACTTCGACT
* * * *
47162779 ATATTTGGCACTTAGTGTGCGATTCGGCATAGCTTCGGCT
1 ATATTTGGCACTTAGTGTGCGATTCAGCAAAACTTCGACT
47162819 ATATTTGGCACTTAGTGTG
1 ATATTTGGCACTTAGTGTG
47162838 TGAGACTGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.02
40 51 0.98
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (40 bp):
ATATTTGGCACTTAGTGTGCGATTCAGCAAAACTTCGACT
Found at i:47162873 original size:41 final size:41
Alignment explanation
Indices: 47162807--47162905 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 41
47162797 GCGATTCGGC
* ** * * * *
47162807 ATAGCTTCGGCTATATTTGGCACTTAGTGTGTGAGACTGA-G
1 ATAGCTTCGGCTATGTAAGGAACTTAGTGTGAGA-AATGATA
*
47162848 ATAGCTTCGGCTATGTAAGGAACTTAGTGTGAGAAATTATA
1 ATAGCTTCGGCTATGTAAGGAACTTAGTGTGAGAAATGATA
47162889 ATAGCTTCGGCTATGTA
1 ATAGCTTCGGCTATGTA
47162906 TCGGCCTTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 3 0.06
41 46 0.94
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.33
Consensus pattern (41 bp):
ATAGCTTCGGCTATGTAAGGAACTTAGTGTGAGAAATGATA
Found at i:47165606 original size:40 final size:40
Alignment explanation
Indices: 47165562--47165789 Score: 366
Period size: 40 Copynumber: 5.7 Consensus size: 40
47165552 GCAAACACAT
* *
47165562 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
47165602 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
*
47165642 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
* * * *
47165682 TTGCCTTCGGGTCATAGCCCGGACATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
* * *
47165722 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
47165762 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
47165790 TCCAATGCTC
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
Found at i:47173123 original size:12 final size:12
Alignment explanation
Indices: 47173106--47173132 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
47173096 GGGTACGGGT
47173106 AAGGGGTGTTAC
1 AAGGGGTGTTAC
47173118 AAGGGGTGTTAC
1 AAGGGGTGTTAC
47173130 AAG
1 AAG
47173133 CATTAACGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.41, T:0.22
Consensus pattern (12 bp):
AAGGGGTGTTAC
Found at i:47179803 original size:27 final size:28
Alignment explanation
Indices: 47179773--47179872 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 28
47179763 TTTAGTTTAC
47179773 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
47179800 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
47179827 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
47179854 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
47179873 CCGATTTACA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.11
27 54 0.86
28 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:47179872 original size:54 final size:54
Alignment explanation
Indices: 47179773--47179879 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
47179763 TTTAGTTTAC
* * *
47179773 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
47179827 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
47179880 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:47179887 original size:27 final size:27
Alignment explanation
Indices: 47179857--47179917 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
47179847 CGACTTGTAA
47179857 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
**** *
47179884 AATTACCGTTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
47179911 AATTACC
1 AATTACC
47179918 GTTTTACCCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:47180079 original size:27 final size:27
Alignment explanation
Indices: 47179868--47180078 Score: 278
Period size: 27 Copynumber: 7.8 Consensus size: 27
47179858 ATTACCAAAG
* *
47179868 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
47179895 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * * *
47179922 TACCCCCAATTTACATAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
47179949 TACCCTCGACTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
**
47179976 TACCCTCGATTTACTGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
47180003 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
47180030 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
47180057 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
47180079 TAAAATACCC
Statistics
Matches: 166, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 166 1.00
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:47180091 original size:54 final size:54
Alignment explanation
Indices: 47179814--47180078 Score: 217
Period size: 54 Copynumber: 4.9 Consensus size: 54
47179804 AATACTGAAA
** *** * * ** * *
47179814 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCGAAT
* * * * * **
47179868 TACCCCCGATTTACAGAATTACCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCGAAT
* * * * **
47179922 TACCCCCAATTTACATAATTA-TCGTTTTACCCTCGACTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTACAAAATTACCGAAT
** * * * * **
47179976 TACCCTCGATTTACTGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCGAAT
*
47180030 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTAC
47180079 TAAAATACCC
Statistics
Matches: 170, Mismatches: 39, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
54 170 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCGAAT
Found at i:47180102 original size:54 final size:54
Alignment explanation
Indices: 47179992--47180196 Score: 169
Period size: 54 Copynumber: 3.8 Consensus size: 54
47179982 CGATTTACTG
* **** * **
47179992 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAA
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
* *
47180046 AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAA
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
**** * * * *
47180100 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGA
1 AATTACCGTTTTACCCTCGA-TTTATAAAATTACTAAAATACCCTTGGTTTGTAA
*** * * * *
47180154 AATTACCGAAATACACTCAATTTGTAAAATTACCAAAATACCC
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCC
47180197 CTGATTTACA
Statistics
Matches: 126, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.02
54 122 0.97
55 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
Found at i:47180104 original size:81 final size:81
Alignment explanation
Indices: 47179814--47180105 Score: 217
Period size: 81 Copynumber: 3.6 Consensus size: 81
47179804 AATACTGAAA
** ** * * * ***** * *
47179814 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGACT
*
47179879 TACAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * **** * * * *
47179895 TACCCCCGATTTACATAATTACCGTTTTACCCCCAATTTACATAATTA-TCGTTTTACCCTCGAC
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACT-GTTTTACCCTCGAC
47179959 TTACAAAATTACCGTTT
65 TTACAAAATTACCGTTT
** **** * * *
47179976 TACCCTCGATTTACTGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGACT
*
47180041 TACAAAATTACTGTTT
66 TACAAAATTACCGTTT
* * * *
47180057 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTAC
47180106 CAAAATACCC
Statistics
Matches: 165, Mismatches: 44, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
81 164 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGACT
TACAAAATTACCGTTT
Found at i:47180142 original size:81 final size:80
Alignment explanation
Indices: 47180057--47180309 Score: 206
Period size: 81 Copynumber: 3.1 Consensus size: 80
47180047 ATTACTGTTT
* *
47180057 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTT
1 TACCCTTGATTTAAAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-GTT
47180122 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* *** ** * *** *
47180138 TACCCTTGGTTTGTGAAATTACCGAAATACACTCAATTTGTAAAATTACCAAAATACCCCTGATT
1 TACCCTTGATTTAAAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGTTT
47180203 -TACAAAGTTA-CAGAAA
66 GTA-AAA-TTACCA-AAA
* ** ** **
47180219 TACCCTTGACTTTATAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCTTTG
1 TACCCTTGA-TTTA-AAAAATTACTA-AAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-
* *
47180283 GTTTGTAGATTTACCAAAA
62 GTTTGTAAAATTACCAAAA
*
47180302 CACCCTTG
1 TACCCTTG
47180310 TAGGATGAAA
Statistics
Matches: 130, Mismatches: 33, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
79 2 0.02
80 8 0.06
81 64 0.49
82 3 0.02
83 45 0.35
84 6 0.05
85 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (80 bp):
TACCCTTGATTTAAAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGTTT
GTAAAATTACCAAAA
Found at i:47180283 original size:27 final size:27
Alignment explanation
Indices: 47180030--47180286 Score: 154
Period size: 27 Copynumber: 9.4 Consensus size: 27
47180020 ATTACTGTTT
* * ***
47180030 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTTGGTTTACAAAATTACCGAAA
* * **
47180057 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCGAAA
** *
47180084 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCGAAA
* * ** *
47180111 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCGAAA
***
47180138 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACCGAAA
* *** ** *
47180165 TACACTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCGAAA
* * * *
47180192 TACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTTGGTTTACAAAATTACCGAAA
* * **
47180219 TACCCTTGACTTTATAAAAATTATAGAAA
1 TACCCTTG-GTTTA-CAAAATTACCGAAA
* *
47180248 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCGAAA
*
47180275 TACCTTTGGTTT
1 TACCCTTGGTTT
47180287 GTAGATTTAC
Statistics
Matches: 186, Mismatches: 42, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
27 160 0.86
28 8 0.04
29 18 0.10
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCGAAA
Found at i:47180378 original size:27 final size:26
Alignment explanation
Indices: 47180317--47180404 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 26
47180307 TTGTAGGATG
* * *
47180317 AAATGACTAAAATACCCCTATGAGGTT
1 AAATGACCATAATACCCCTAT-AGGGT
* *
47180344 AAAAGACCGTAA-AGCCCCTATAGGGT
1 AAATGACCATAATA-CCCCTATAGGGT
* *
47180370 AAAGTGACCATAATACCCCTGTATGGT
1 AAA-TGACCATAATACCCCTATAGGGT
47180397 AAAATGAC
1 -AAATGAC
47180405 GAATATGCCC
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
26 8 0.17
27 36 0.75
28 4 0.08
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (26 bp):
AAATGACCATAATACCCCTATAGGGT
Found at i:47181208 original size:26 final size:26
Alignment explanation
Indices: 47181179--47181328 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
47181169 GATGAAGTGC
*
47181179 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
47181205 AAAAGGGCTTATGCCGCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
47181231 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
47181257 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
47181283 AAAAGGGTTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
47181309 AAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
47181329 ACTAAAGAGG
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 12 0.11
26 101 0.89
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:47181257 original size:52 final size:52
Alignment explanation
Indices: 47181179--47181328 Score: 257
Period size: 52 Copynumber: 2.9 Consensus size: 52
47181169 GATGAAGTGC
*
47181179 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCGCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
47181231 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* * *
47181283 AAAAGGGTTTATGCCCCAGTTTACTGAAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
47181329 ACTAAAGAGG
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 12 0.13
52 82 0.87
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:47181532 original size:42 final size:42
Alignment explanation
Indices: 47181473--47181564 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
47181463 TAGTCTCCCC
* ** *
47181473 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
47181515 AAATGGGTTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
47181557 AAATGGGC
1 AAATGGGC
47181565 CTATAGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:47181625 original size:31 final size:31
Alignment explanation
Indices: 47181587--47181665 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
47181577 CCGTTACAGT
*
47181587 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
47181618 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
47181649 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
47181666 AATCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:47183858 original size:46 final size:46
Alignment explanation
Indices: 47183752--47184070 Score: 417
Period size: 46 Copynumber: 6.8 Consensus size: 46
47183742 TTTGACATGA
* * * *
47183752 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCA-TTTCATGTCACGT
*
47183802 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
*
47183848 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
*
47183894 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
** * *
47183940 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA-GATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATG-TCACGT
** * *
47183986 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
**
47184032 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
47184071 ATCAGAGAGC
Statistics
Matches: 252, Mismatches: 14, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
45 4 0.02
46 223 0.88
47 1 0.00
49 1 0.00
50 23 0.09
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
Found at i:47184075 original size:46 final size:46
Alignment explanation
Indices: 47183800--47184074 Score: 424
Period size: 46 Copynumber: 6.0 Consensus size: 46
47183790 TTTCTGTCAT
** * *
47183800 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
** * *
47183846 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
**
47183892 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
* * *
47183938 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAGATTAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
*
47183984 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
47184030 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
47184075 GAGAGCACAC
Statistics
Matches: 220, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 220 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
Found at i:47191387 original size:101 final size:101
Alignment explanation
Indices: 47191260--47191480 Score: 304
Period size: 101 Copynumber: 2.2 Consensus size: 101
47191250 AAACGGGGTT
* * * *
47191260 TTACTTGCACA-CATATATCGGAATCACAT-TTCGATGCCAACGTATAAAATGTGGACTTATTCA
1 TTACTCGCACATCATATATCAGAATCACATATT-GATGCCAACGTATAAAACGTGGACTTACTCA
*
47191323 CACACATATATCA-GAATCACATATCGATTCCATGGTC
65 CACACATATA-CAGGAATCACACATCGATTCCATGGTC
* * * *
47191360 TTACTCGCACATCACATATCAGAATCACATATTGATGCCAACGTATTAAACGTGGTCTTACTCGC
1 TTACTCGCACATCATATATCAGAATCACATATTGATGCCAACGTATAAAACGTGGACTTACTCAC
* *
47191425 GCACATGTACAGGAATCACACATCGATTCCATGGTC
66 ACACATATACAGGAATCACACATCGATTCCATGGTC
47191461 TTACTCGCACATCATATATC
1 TTACTCGCACATCATATATC
47191481 GAAATTCACA
Statistics
Matches: 106, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
100 12 0.11
101 92 0.87
102 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (101 bp):
TTACTCGCACATCATATATCAGAATCACATATTGATGCCAACGTATAAAACGTGGACTTACTCAC
ACACATATACAGGAATCACACATCGATTCCATGGTC
Found at i:47192045 original size:20 final size:20
Alignment explanation
Indices: 47192020--47192061 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
47192010 ATTTTCATTC
47192020 AACTTAGTCCAAAAACACAT
1 AACTTAGTCCAAAAACACAT
47192040 AACTTAGTCCAAAAACACAT
1 AACTTAGTCCAAAAACACAT
47192060 AA
1 AA
47192062 ATGGGCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.24, G:0.05, T:0.19
Consensus pattern (20 bp):
AACTTAGTCCAAAAACACAT
Found at i:47201065 original size:94 final size:94
Alignment explanation
Indices: 47200904--47201091 Score: 376
Period size: 94 Copynumber: 2.0 Consensus size: 94
47200894 CATACATATT
47200904 TAAGTATATTAAGAGTTTACTTCGGGTTATACGAACTTACCTGGTAATTGCTTCAATTTTGTATT
1 TAAGTATATTAAGAGTTTACTTCGGGTTATACGAACTTACCTGGTAATTGCTTCAATTTTGTATT
47200969 TCGGTTATTCCGAAACCTTTTGTTTTCCA
66 TCGGTTATTCCGAAACCTTTTGTTTTCCA
47200998 TAAGTATATTAAGAGTTTACTTCGGGTTATACGAACTTACCTGGTAATTGCTTCAATTTTGTATT
1 TAAGTATATTAAGAGTTTACTTCGGGTTATACGAACTTACCTGGTAATTGCTTCAATTTTGTATT
47201063 TCGGTTATTCCGAAACCTTTTGTTTTCCA
66 TCGGTTATTCCGAAACCTTTTGTTTTCCA
47201092 CGATCGACCT
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (94 bp):
TAAGTATATTAAGAGTTTACTTCGGGTTATACGAACTTACCTGGTAATTGCTTCAATTTTGTATT
TCGGTTATTCCGAAACCTTTTGTTTTCCA
Found at i:47202356 original size:12 final size:12
Alignment explanation
Indices: 47202339--47202368 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
47202329 AAATATTGCA
47202339 AAATTATTTCAC
1 AAATTATTTCAC
47202351 AAATTATTTCAC
1 AAATTATTTCAC
47202363 AAATTA
1 AAATTA
47202369 AATGAGGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATTATTTCAC
Found at i:47209437 original size:13 final size:13
Alignment explanation
Indices: 47209419--47209443 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47209409 GGCGCATTCG
47209419 TAGTTAATTTAGC
1 TAGTTAATTTAGC
47209432 TAGTTAATTTAG
1 TAGTTAATTTAG
47209444 TTTTAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
TAGTTAATTTAGC
Found at i:47212723 original size:29 final size:28
Alignment explanation
Indices: 47212672--47212754 Score: 80
Period size: 28 Copynumber: 2.9 Consensus size: 28
47212662 TTAATAAAAT
** *
47212672 AATTTTAAAAATTTAACATAAATTTTAA
1 AATTTTAAAAATAAAAAATAAATTTTAA
*
47212700 AATTTTAAAAATAAAAAATTAAATTCTTCA
1 AATTTTAAAAATAAAAAA-TAAATT-TTAA
47212730 AA--TTAAAAATATAAAAACTAAATTT
1 AATTTTAAAAATA-AAAAA-TAAATTT
47212755 CCAATCTCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
28 25 0.53
29 17 0.36
30 5 0.11
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (28 bp):
AATTTTAAAAATAAAAAATAAATTTTAA
Found at i:47212874 original size:22 final size:22
Alignment explanation
Indices: 47212849--47212895 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
47212839 AGATAGAAGC
*
47212849 TAGAAGTAGCATGAGAACAGCT
1 TAGAAGTAGCATGAGAACAACT
*
47212871 TAGAAGTAGCGTGAGAACAACT
1 TAGAAGTAGCATGAGAACAACT
47212893 TAG
1 TAG
47212896 CTCATAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.19
Consensus pattern (22 bp):
TAGAAGTAGCATGAGAACAACT
Found at i:47214303 original size:27 final size:27
Alignment explanation
Indices: 47214245--47214314 Score: 69
Period size: 26 Copynumber: 2.7 Consensus size: 27
47214235 AGTAGAAGGC
*
47214245 TTATAAATA-AAAAATTAATAACTTTA
1 TTATAAATATAAAAATTAATAACTTAA
47214271 TT-TAAATATAATTAAA-TAATAA-TTAA
1 TTATAAATATAA--AAATTAATAACTTAA
*
47214297 TTATAAA-ATAAATATTAA
1 TTATAAATATAAAAATTAA
47214315 AGACCCTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
24 2 0.05
25 9 0.24
26 13 0.35
27 10 0.27
28 3 0.08
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (27 bp):
TTATAAATATAAAAATTAATAACTTAA
Found at i:47214971 original size:3 final size:3
Alignment explanation
Indices: 47214963--47214992 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
47214953 TTATCCAATT
47214963 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
47214993 CTACGAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:47215272 original size:10 final size:10
Alignment explanation
Indices: 47215245--47215310 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 10
47215235 CAAGTTAACA
47215245 TTTAATTAATT
1 TTTAA-TAATT
47215256 TTTAA-AATT
1 TTTAATAATT
*
47215265 TTTAAAAATAT
1 TTTAATAAT-T
* *
47215276 TTTTATACTT
1 TTTAATAATT
47215286 TTTAATAA-T
1 TTTAATAATT
47215295 TTTAATAATT
1 TTTAATAATT
47215305 TTTAAT
1 TTTAAT
47215311 TTATAAAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
9 18 0.38
10 17 0.36
11 12 0.26
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (10 bp):
TTTAATAATT
Found at i:47215306 original size:19 final size:19
Alignment explanation
Indices: 47215245--47215310 Score: 62
Period size: 19 Copynumber: 3.3 Consensus size: 19
47215235 CAAGTTAACA
47215245 TTTAATTAATTTTTAA-AATT
1 TTTAA-TAA-TTTTAATAATT
* * *
47215265 TTTAAAAATATTTTTATACTT
1 TTT-AATA-ATTTTAATAATT
47215286 TTTAATAATTTTAATAATT
1 TTTAATAATTTTAATAATT
47215305 TTTAAT
1 TTTAAT
47215311 TTATAAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
19 16 0.43
20 12 0.32
21 9 0.24
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTAATAATTTTAATAATT
Found at i:47217517 original size:73 final size:73
Alignment explanation
Indices: 47217426--47217571 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
47217416 CAACAATGGG
47217426 CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
1 CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
47217491 GATTTTTT
66 GATTTTTT
47217499 CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
1 CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
47217564 GATTTTTT
66 GATTTTTT
47217572 TAAAATGTAG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.34
Consensus pattern (73 bp):
CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
GATTTTTT
Found at i:47217672 original size:10 final size:10
Alignment explanation
Indices: 47217657--47217683 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
47217647 ATGCTTGTTC
47217657 AAGCTCGGTT
1 AAGCTCGGTT
47217667 AAGCTCGGTT
1 AAGCTCGGTT
47217677 AAGCTCG
1 AAGCTCG
47217684 TACTTTTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (10 bp):
AAGCTCGGTT
Found at i:47222067 original size:40 final size:40
Alignment explanation
Indices: 47222012--47222152 Score: 246
Period size: 40 Copynumber: 3.5 Consensus size: 40
47222002 GTGGCTCGGA
* * * *
47222012 TATAACAACCAGCACGAATGCCTTCAGGACTTAACCTGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
47222052 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
47222092 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
47222132 TATAATAACCCGCACGAATGC
1 TATAATAACCCGCACGAATGC
47222153 TATGCACATA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:47229404 original size:37 final size:37
Alignment explanation
Indices: 47229354--47229427 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
47229344 TATGATCATT
47229354 TTGCATGGACCCTACCACGGAAGAATCAAAAAATGGG
1 TTGCATGGACCCTACCACGGAAGAATCAAAAAATGGG
*
47229391 TTGCATGGACCCTACCGCGGAAGAATCAAAAAATGGG
1 TTGCATGGACCCTACCACGGAAGAATCAAAAAATGGG
47229428 GTTCTCCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.22, G:0.26, T:0.16
Consensus pattern (37 bp):
TTGCATGGACCCTACCACGGAAGAATCAAAAAATGGG
Found at i:47232428 original size:15 final size:15
Alignment explanation
Indices: 47232404--47232437 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
47232394 AACAATTACG
* *
47232404 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
47232419 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
47232434 ATAA
1 ATAA
47232438 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:47246765 original size:64 final size:64
Alignment explanation
Indices: 47246685--47246907 Score: 367
Period size: 64 Copynumber: 3.5 Consensus size: 64
47246675 ACAAACTTAG
47246685 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
47246749 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
* * * *
47246813 CATTGTAATATAAATTTTTTTATATAAATTAAATGCATTACAA-CATTAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCA-TAATCTAATTGGAACAAA
* * *
47246877 CTTTGTAATATAATTTTTTTTATATAAATTA
1 CTTTGTAATATAAATTATGTTATATAAATTA
47246908 CATAAACTCG
Statistics
Matches: 152, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
63 2 0.01
64 150 0.99
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (64 bp):
CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
Found at i:47249390 original size:22 final size:22
Alignment explanation
Indices: 47249364--47249411 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
47249354 TTTACTCTAT
* *
47249364 AATTTCAATTGTACGAAGACTA
1 AATTTCAAATATACGAAGACTA
*
47249386 AATTTCAAATATATGAAGACTA
1 AATTTCAAATATACGAAGACTA
47249408 AATT
1 AATT
47249412 CCTGAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (22 bp):
AATTTCAAATATACGAAGACTA
Found at i:47252099 original size:21 final size:19
Alignment explanation
Indices: 47252075--47252130 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 19
47252065 TTAACAAATA
47252075 TAAAAATTATAAAAAAATTCT
1 TAAAAATTATAAAAAAA--CT
*
47252096 TAAAGAATATATAAAAAAAGT
1 TAAA-AAT-TATAAAAAAACT
47252117 TAAAAATTA-AAAAA
1 TAAAAATTATAAAAA
47252131 TCTAGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
18 5 0.16
19 2 0.06
20 3 0.09
21 9 0.28
22 3 0.09
23 10 0.31
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
TAAAAATTATAAAAAAACT
Done.