Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 141 of 344
Found at i:47255530 original size:23 final size:22
Alignment explanation
Indices: 47255504--47255547 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
47255494 TTGAAATGAA
47255504 AAATAAAATAAAATATT-TAAAAT
1 AAAT-AAATAAAA-ATTATAAAAT
*
47255527 AAATATATAAAAATTATAAAA
1 AAATAAATAAAAATTATAAAA
47255548 ATTATTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.16
22 12 0.63
23 4 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
AAATAAATAAAAATTATAAAAT
Found at i:47255532 original size:13 final size:14
Alignment explanation
Indices: 47255506--47255538 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
47255496 GAAATGAAAA
47255506 ATAAAATAAAATAT
1 ATAAAATAAAATAT
*
47255520 TTAAAAT-AAATAT
1 ATAAAATAAAATAT
47255533 ATAAAA
1 ATAAAA
47255539 ATTATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAAAATAAAATAT
Found at i:47256924 original size:20 final size:19
Alignment explanation
Indices: 47256880--47256925 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
47256870 AAAATTACAA
47256880 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
47256899 CAAAAATTCAAAATATATATTT
1 -AAAAATTCAAAATA-AT-TTT
47256921 AAAAA
1 AAAAA
47256926 AATATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.58
21 7 0.29
22 3 0.12
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:47257557 original size:2 final size:2
Alignment explanation
Indices: 47257550--47257583 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
47257540 AGCATAAAGC
*
47257550 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
47257584 AGGAGAGGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
GA
Found at i:47266801 original size:19 final size:19
Alignment explanation
Indices: 47266779--47266815 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
47266769 AATATGTAAT
*
47266779 TAGCTAATTACTATGGATA
1 TAGCTAATTACTAGGGATA
*
47266798 TAGCTGATTACTAGGGAT
1 TAGCTAATTACTAGGGAT
47266816 TTAATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (19 bp):
TAGCTAATTACTAGGGATA
Found at i:47284842 original size:24 final size:24
Alignment explanation
Indices: 47284810--47284870 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
47284800 AACTGTATTT
* * *
47284810 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
47284834 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
47284858 GCACACATAGTGC
1 GCACACATAGTGC
47284871 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:47292064 original size:24 final size:24
Alignment explanation
Indices: 47292032--47292092 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
47292022 AACTGTATTT
* * *
47292032 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
47292056 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
47292080 GCACACATAGTGC
1 GCACACATAGTGC
47292093 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:47294370 original size:34 final size:34
Alignment explanation
Indices: 47294292--47294363 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
47294282 CATTTCAGTA
*
47294292 ACAGT-TCAGTTTCAGTTAGGGCCTAAGCCCATT
1 ACAGTATCAGTATCAGTTAGGGCCTAAGCCCATT
* *
47294325 ACAGTATCAGTATCAGTGTA-GGCCTTAGCCTATT
1 ACAGTATCAGTATCAGT-TAGGGCCTAAGCCCATT
*
47294359 TCAGT
1 ACAGT
47294364 GACAGTAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 5 0.15
34 26 0.79
35 2 0.06
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (34 bp):
ACAGTATCAGTATCAGTTAGGGCCTAAGCCCATT
Found at i:47302172 original size:56 final size:56
Alignment explanation
Indices: 47302086--47302202 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 56
47302076 ACAAGGGATG
47302086 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
47302142 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
47302198 ATGGG
1 ATGGG
47302203 AAATAAACTA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:47303549 original size:80 final size:79
Alignment explanation
Indices: 47303335--47303559 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 79
47303325 TCGAATGATG
* * * * * *
47303335 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATT
*
47303399 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
* *
47303415 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTATTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
47303478 TGTGCGAGTTACTAAA
64 TGTGCGAGATACTAAA
* *
47303494 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
47303559 G
65 G
47303560 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.02
79 59 0.47
80 59 0.47
81 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:47303566 original size:40 final size:40
Alignment explanation
Indices: 47303335--47303559 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
47303325 TCGAATGATG
* * * *
47303335 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
47303375 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
47303415 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47303454 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
47303494 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
47303535 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47303560 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47303581 original size:119 final size:119
Alignment explanation
Indices: 47303335--47303592 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
47303325 TCGAATGATG
* * *
47303335 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
* ** *
47303400 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTATTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
47303454 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
* * * *
47303517 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
47303574 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
47303593 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:47305824 original size:18 final size:17
Alignment explanation
Indices: 47305797--47305832 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
47305787 TAAGCAAGCT
47305797 AAACAAAAACAAAATAA
1 AAACAAAAACAAAATAA
47305814 AAACTAAAAACAAAATAA
1 AAAC-AAAAACAAAATAA
47305832 A
1 A
47305833 TTGAAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.81, C:0.11, G:0.00, T:0.08
Consensus pattern (17 bp):
AAACAAAAACAAAATAA
Found at i:47309228 original size:13 final size:12
Alignment explanation
Indices: 47309193--47309235 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 12
47309183 CGTATACACA
47309193 ATTCATATAACT
1 ATTCATATAACT
47309205 ACTTCCATATAACT
1 A-TT-CATATAACT
*
47309219 GATTCATATAATT
1 -ATTCATATAACT
47309232 ATTC
1 ATTC
47309236 TGTATATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 5 0.19
13 10 0.37
14 11 0.41
15 1 0.04
ACGTcount: A:0.37, C:0.19, G:0.02, T:0.42
Consensus pattern (12 bp):
ATTCATATAACT
Found at i:47309280 original size:13 final size:13
Alignment explanation
Indices: 47309264--47309323 Score: 50
Period size: 13 Copynumber: 4.4 Consensus size: 13
47309254 TAACCGATTC
47309264 ATATAATCATTTT
1 ATATAATCATTTT
*
47309277 ATATATTCATTTTT
1 ATATAATCA-TTTT
* *
47309291 CCATATAA-CCTATTC
1 --ATATAATCAT-TTT
47309306 ATATAATCATTTT
1 ATATAATCATTTT
47309319 ATATA
1 ATATA
47309324 TTCGTTTTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
13 21 0.58
14 7 0.19
15 3 0.08
16 5 0.14
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
ATATAATCATTTT
Found at i:47309284 original size:21 final size:21
Alignment explanation
Indices: 47309260--47309326 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
47309250 CATATAACCG
47309260 ATTCATATAATCATTTTATAT
1 ATTCATATAATCATTTTATAT
** * * **
47309281 ATTCAT-TTTTCCATATAACCT
1 ATTCATATAAT-CATTTTATAT
47309302 ATTCATATAATCATTTTATAT
1 ATTCATATAATCATTTTATAT
47309323 ATTC
1 ATTC
47309327 GTTTTTCCAC
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
20 2 0.06
21 28 0.88
22 2 0.06
ACGTcount: A:0.34, C:0.15, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTCATATAATCATTTTATAT
Found at i:47309307 original size:42 final size:41
Alignment explanation
Indices: 47309207--47309335 Score: 163
Period size: 42 Copynumber: 3.1 Consensus size: 41
47309197 ATATAACTAC
* * * *
47309207 TTCCATATAA-CTGATTCATATAATTATTCTGTATATT-TAT
1 TTCCATATAACCT-ATTCATATAATCATTTTATATATTCTTT
* *
47309247 GTCCATATAACCGATTCATATAATCATTTTATATATTCATTT
1 TTCCATATAACCTATTCATATAATCATTTTATATATTC-TTT
47309289 TTCCATATAACCTATTCATATAATCATTTTATATATTCGTTT
1 TTCCATATAACCTATTCATATAATCATTTTATATATTC-TTT
47309331 TTCCA
1 TTCCA
47309336 CCCAATGAAC
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 30 0.39
41 1 0.01
42 46 0.60
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.48
Consensus pattern (41 bp):
TTCCATATAACCTATTCATATAATCATTTTATATATTCTTT
Found at i:47309409 original size:25 final size:25
Alignment explanation
Indices: 47309377--47309441 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
47309367 ACACAAGAAT
*
47309377 AATGCTCATACAAGCTATAACTGTA
1 AATGCTCACACAAGCTATAACTGTA
* * * *
47309402 ATTGCTCACCCGAGCTATAATTGTA
1 AATGCTCACACAAGCTATAACTGTA
47309427 AATGCTCACACAAGC
1 AATGCTCACACAAGC
47309442 AATGAAATGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (25 bp):
AATGCTCACACAAGCTATAACTGTA
Found at i:47317600 original size:46 final size:45
Alignment explanation
Indices: 47317530--47317698 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
47317520 AACCCGCCCC
47317530 TAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTGGGCGTTCGCATCCA
* *
47317576 TAAGTGAACTCGGACTCAAATCAACGAGTTTGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTGG--G-C--GTTCGCATCCA
* * * *
47317624 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTT-GGGCGTTCGCATCCA
*
47317669 TAGGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
47317699 CGGATGCTCA
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 58 0.57
47 24 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTGGGCGTTCGCATCCA
Found at i:47317642 original size:93 final size:93
Alignment explanation
Indices: 47317535--47317705 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
47317525 GCCCCTAAGT
* *
47317535 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAAATCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCA
*
47317599 ACGAGTTTGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
47317628 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
47317693 CGAGTTCGGATGC
66 CGAGTTCGGATGC
47317706 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:47318162 original size:30 final size:30
Alignment explanation
Indices: 47318128--47318187 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
47318118 ATTTAATACG
47318128 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
47318158 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
47318188 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:47321810 original size:19 final size:18
Alignment explanation
Indices: 47321770--47321813 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
47321760 GTATTGTTTT
47321770 TGTTGTTTATTTGGACTCA
1 TGTTGTTTATTTGGA-TCA
47321789 TGTTGTTTATTTAGG-TCGA
1 TGTTGTTTATTT-GGATC-A
47321808 TGTTGT
1 TGTTGT
47321814 GTTGCTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.09
19 19 0.83
20 2 0.09
ACGTcount: A:0.14, C:0.07, G:0.25, T:0.55
Consensus pattern (18 bp):
TGTTGTTTATTTGGATCA
Found at i:47323212 original size:27 final size:27
Alignment explanation
Indices: 47323170--47323345 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
47323160 AACACTCCAG
*
47323170 GAAAGGAATGCGTTTGTGGCAATATAT
1 GAAAGGAATGCCTTTGTGGCAATATAT
* *
47323197 GAAAGGAATACCTTTGTGGCAATATCT
1 GAAAGGAATGCCTTTGTGGCAATATAT
* *
47323224 -AAGAGAAATGCCTTTGTGGCAATTTAT
1 GAA-AGGAATGCCTTTGTGGCAATATAT
* *
47323251 GAAATGAATGCCCTTGTGGCAATATAT
1 GAAAGGAATGCCTTTGTGGCAATATAT
** * *
47323278 GAAAAAAATGCCTTTGTGACAATATAC
1 GAAAGGAATGCCTTTGTGGCAATATAT
* * * *
47323305 GAAAAG-ATGTCTTTGTGGTAGA-ATTT
1 GAAAGGAATGCCTTTGTGGCA-ATATAT
*
47323331 GGAAGGAATGCCTTT
1 GAAAGGAATGCCTTT
47323346 ACGACATACT
Statistics
Matches: 120, Mismatches: 25, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
26 19 0.16
27 99 0.82
28 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (27 bp):
GAAAGGAATGCCTTTGTGGCAATATAT
Found at i:47325446 original size:27 final size:29
Alignment explanation
Indices: 47325416--47325473 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 29
47325406 TATAGCCATG
*
47325416 AAGG-CTTCCTGT-ATAGAGAATGCCACA
1 AAGGTCTTCCTGTGACAGAGAATGCCACA
* * *
47325443 AAGGTTTTCCTTTGACAGAGATTGCCACA
1 AAGGTCTTCCTGTGACAGAGAATGCCACA
47325472 AA
1 AA
47325474 TGCATTTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 4 0.16
28 6 0.24
29 15 0.60
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (29 bp):
AAGGTCTTCCTGTGACAGAGAATGCCACA
Found at i:47328331 original size:61 final size:61
Alignment explanation
Indices: 47328256--47328402 Score: 163
Period size: 61 Copynumber: 2.4 Consensus size: 61
47328246 TCCAGTCTAG
* * * *
47328256 AGTTTTTCTACAAAGGCGTTCCTTTAGATTCAGAACTCTCCACAAAGGCTTT-TGTGTCCAA
1 AGTTTTTCCACAAAGGCATTCCTTTACATTCAGAACTCCCCACAAAGGCTTTCT-TGTCCAA
* * * * * *
47328317 AGTTTTGCCACAAAGGCATTTCTTTACATTTAGTACTCCCCACAATGGCTTTCTTGTCCAG
1 AGTTTTTCCACAAAGGCATTCCTTTACATTCAGAACTCCCCACAAAGGCTTTCTTGTCCAA
* *
47328378 ATTTTTTCCACAAAGG-TTTCCTTTA
1 AGTTTTTCCACAAAGGCATTCCTTTA
47328403 ATTGGTGTTT
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
60 7 0.10
61 63 0.89
62 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (61 bp):
AGTTTTTCCACAAAGGCATTCCTTTACATTCAGAACTCCCCACAAAGGCTTTCTTGTCCAA
Found at i:47330707 original size:21 final size:22
Alignment explanation
Indices: 47330681--47330721 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
47330671 TGCACCTCCT
* *
47330681 TTTTAATTTACAAA-TATCAAA
1 TTTTAAATTAAAAACTATCAAA
47330702 TTTTAAATTAAAAACTATCA
1 TTTTAAATTAAAAACTATCA
47330722 TGGTAGATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTTAAATTAAAAACTATCAAA
Found at i:47331113 original size:37 final size:37
Alignment explanation
Indices: 47331058--47331133 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
47331048 CCTTGTATTA
*
47331058 ATTTACTAATTTTGAACTAACTTATAAAACAAATCAT
1 ATTTACTAATTTTAAACTAACTTATAAAACAAATCAT
47331095 ATTTACTAATTTTAAACTAACTTATAAAACAAATCAT
1 ATTTACTAATTTTAAACTAACTTATAAAACAAATCAT
47331132 AT
1 AT
47331134 ATCTAATATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (37 bp):
ATTTACTAATTTTAAACTAACTTATAAAACAAATCAT
Found at i:47337188 original size:48 final size:48
Alignment explanation
Indices: 47337119--47337214 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
47337109 TGCCTTGAAT
47337119 AAACAAAAGTGGTTTAACCCACTTAAACTGCTGAATAAGATTGATCAC
1 AAACAAAAGTGGTTTAACCCACTTAAACTGCTGAATAAGATTGATCAC
47337167 AAACAAAAGTGGTTTAACCCACTTAAACTGCTGAATAAGATTGATCAC
1 AAACAAAAGTGGTTTAACCCACTTAAACTGCTGAATAAGATTGATCAC
47337215 CTAACACTCC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (48 bp):
AAACAAAAGTGGTTTAACCCACTTAAACTGCTGAATAAGATTGATCAC
Found at i:47338091 original size:125 final size:125
Alignment explanation
Indices: 47337869--47338096 Score: 384
Period size: 125 Copynumber: 1.8 Consensus size: 125
47337859 AACTCACCTA
* * *
47337869 AAGTCCAAATTCGGTACTCCACTATCTCTCACCTCAACTCCCCCTAATCCTCTCCTCTAATCTCT
1 AAGTCCAAATTCGGCACTCCACTATCTCCCACCTCAACTCCCCCTAATCCTCTCCTCAAATCTCT
* * * *
47337934 CTATAATATTCTCTTAGAATTCGGCTACACACTCCCCAAACTGACTTCCTTGAGTGCCTG
66 CTACAATATCCTCCTAGAATTCGACTACACACTCCCCAAACTGACTTCCTTGAGTGCCTG
*
47337994 AAGTCCAAATTCGGCATTCCACTATCTCCCACCTCAACTCCCCCTAATCCTCTCCTCAAATCTCT
1 AAGTCCAAATTCGGCACTCCACTATCTCCCACCTCAACTCCCCCTAATCCTCTCCTCAAATCTCT
47338059 CTACAATATCCTCCTAGAATTCGACTACACACTCCCCA
66 CTACAATATCCTCCTAGAATTCGACTACACACTCCCCA
47338097 CTCCCCTCAA
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
125 95 1.00
ACGTcount: A:0.25, C:0.39, G:0.07, T:0.29
Consensus pattern (125 bp):
AAGTCCAAATTCGGCACTCCACTATCTCCCACCTCAACTCCCCCTAATCCTCTCCTCAAATCTCT
CTACAATATCCTCCTAGAATTCGACTACACACTCCCCAAACTGACTTCCTTGAGTGCCTG
Found at i:47343848 original size:27 final size:25
Alignment explanation
Indices: 47343816--47343889 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
47343806 CTAATCTATA
47343816 AAATGACTATTTTGCCCTTGTATGGT
1 AAATGACTATTTT-CCCTTGTATGGT
*
47343842 ATAATGACTATTTTCCACTTATATGGT
1 A-AATGACTATTTTCC-CTTGTATGGT
*
47343869 AAGATGACTGTTTTACCCTTG
1 AA-ATGACTATTTT-CCCTTG
47343890 CGTGATGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 4 0.10
27 35 0.85
28 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (25 bp):
AAATGACTATTTTCCCTTGTATGGT
Found at i:47354105 original size:104 final size:104
Alignment explanation
Indices: 47353983--47354206 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
47353973 AATGGATATC
47353983 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* * *
47354048 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGAAATCA
47354087 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
47354152 GGATCACGCACATAGCACCACCCATAAATCGGGAAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGAAATCA
**
47354191 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
47354207 TTTATATACA
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGAAATCA
Found at i:47361100 original size:68 final size:70
Alignment explanation
Indices: 47360990--47361136 Score: 235
Period size: 69 Copynumber: 2.1 Consensus size: 70
47360980 GGGGAATCAT
* *
47360990 CACTTAGCAACCCTCGGGGGAATCAGCACATAGCAACCCCTTT-TCATTTCAAATATACAATGGA
1 CACTTAGCAACCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATACAATGGA
47361054 TATCG
66 TATCG
***
47361059 CACTTAGCAACCCTC-GGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGGA
1 CACTTAGCAACCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATACAATGGA
47361123 TATCG
66 TATCG
47361128 CACTTAGCA
1 CACTTAGCA
47361137 CCACCAATGA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
68 27 0.38
69 45 0.62
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (70 bp):
CACTTAGCAACCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATACAATGGA
TATCG
Found at i:47361255 original size:102 final size:102
Alignment explanation
Indices: 47361058--47361265 Score: 332
Period size: 102 Copynumber: 2.0 Consensus size: 102
47361048 AATGGATATC
47361058 GCACTTAGCAACCCTCGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGGA
1 GCACTTAGCAACCCTCGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGGA
* *
47361123 TATCGCACTTAGCACCACCAATGAACCGGG-AA-TCA
66 TATCGCACATAGCACCACCAATAAACCGGGAAATTCA
47361158 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAA-CCCTC-GGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTG
* *
47361223 GATCA-CGCACATAGCACCACCCATAAATCGGGAAATTCA
64 GAT-ATCGCACATAGCACCACCAATAAACCGGGAAATTCA
47361262 GCAC
1 GCAC
47361266 ACAGGCAACC
Statistics
Matches: 99, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
100 11 0.11
101 5 0.05
102 73 0.74
103 3 0.03
104 7 0.07
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (102 bp):
GCACTTAGCAACCCTCGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGGA
TATCGCACATAGCACCACCAATAAACCGGGAAATTCA
Found at i:47374411 original size:40 final size:40
Alignment explanation
Indices: 47374367--47374590 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
47374357 GCTACTCATT
*
47374367 CAAATGCCTTCGGGACATT-GCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TTAACCCGGATT-TAGTAACTCGCA
47374407 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
47374446 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
47374486 CCAATGCCTTCGAG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
47374525 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
47374566 CAAA-GCCTTCGGGAC-TAAGCCCGGA
1 CAAATGCCTTCGGGACTTAA-CCCGGA
47374591 CATCATTCGA
Statistics
Matches: 159, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
38 3 0.02
39 66 0.42
40 79 0.50
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:47374441 original size:39 final size:39
Alignment explanation
Indices: 47374367--47374543 Score: 234
Period size: 39 Copynumber: 4.5 Consensus size: 39
47374357 GCTACTCATT
*
47374367 CAAATGCCTTCGGGACATT-GCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGAC-TTAACCCGGATT-TAGTAACTCGCA
47374407 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
47374446 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
* * * *
47374486 CCAATGCCTTC-GAGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAGTAACTCGCA
47374525 CAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGGA-CTTA
47374544 GTCCGGATAT
Statistics
Matches: 125, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 4 0.03
39 64 0.51
40 57 0.46
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:47374551 original size:79 final size:79
Alignment explanation
Indices: 47374367--47374537 Score: 249
Period size: 79 Copynumber: 2.2 Consensus size: 79
47374357 GCTACTCATT
*
47374367 CAAATGCCTTCGGGACATT-GCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCG
1 CAAATGCCTTCGGGAC-TTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGACTTAACCCG
*
47374430 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* *
47374446 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTC-GAGCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGG
*
47374510 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
47374525 CAAATGCCTTCGG
1 CAAATGCCTTCGG
47374538 ATCTTAGTCC
Statistics
Matches: 84, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
78 4 0.05
79 78 0.93
80 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:47374574 original size:79 final size:78
Alignment explanation
Indices: 47374367--47374590 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 78
47374357 GCTACTCATT
* * * *
47374367 CAAATGCCTTCGGGACATT-GCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGAC-TTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGACTTAGCCCGG
*
47374431 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
47374446 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTC-GAGCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGA-CTTAGCCCGG
*
47374510 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
** * * *
47374525 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTAAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTC-GGACTTAGCCCG
47374589 GA
63 GA
47374591 CATCATTCGA
Statistics
Matches: 123, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 7 0.06
79 97 0.79
80 17 0.14
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:47379939 original size:79 final size:81
Alignment explanation
Indices: 47379837--47380021 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
47379827 GCTCCTCGTT
* *
47379837 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
47379900 GGATTTAGTAAC-TAGCA
64 GGATATAGTAACTTAGCA
* **
47379917 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
47379981 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
47379997 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47380022 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.59
80 35 0.38
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:47380021 original size:40 final size:40
Alignment explanation
Indices: 47379837--47380021 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
47379827 GCTCCTCGTT
* * *
47379837 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
47379877 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
47379917 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
47379956 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
47379997 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47380022 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:47382134 original size:41 final size:41
Alignment explanation
Indices: 47382047--47382145 Score: 117
Period size: 41 Copynumber: 2.4 Consensus size: 41
47382037 TGTGATTCAG
* * * * *
47382047 AATAGCTTTAGCTATATATGGCACTTAGTGTGCAAGACCGA
1 AATAGCTTCAGCTATGTAAGGCACTTAGTATGCAAGACCAA
* **
47382088 GATAGCTTCAGCTATGTAAGGCACTTAGTATGCAAGATTAA
1 AATAGCTTCAGCTATGTAAGGCACTTAGTATGCAAGACCAA
*
47382129 AATAGCTTCGGCTATGT
1 AATAGCTTCAGCTATGT
47382146 TTGGGCACCT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (41 bp):
AATAGCTTCAGCTATGTAAGGCACTTAGTATGCAAGACCAA
Found at i:47383296 original size:25 final size:25
Alignment explanation
Indices: 47383268--47383337 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
47383258 CTCTTTTAAT
*
47383268 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
47383293 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
47383318 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
47383338 AACACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:47383441 original size:10 final size:11
Alignment explanation
Indices: 47383393--47383445 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
47383383 GTATATCATA
47383393 GCATATCATGT
1 GCATATCATGT
*
47383404 GCATATCAT-A
1 GCATATCATGT
*
47383414 ACATATCATGT
1 GCATATCATGT
47383425 GCATATCATGT
1 GCATATCATGT
*
47383436 -CCTATCATGT
1 GCATATCATGT
47383446 ATAACAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
10 17 0.47
11 19 0.53
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (11 bp):
GCATATCATGT
Found at i:47383445 original size:21 final size:21
Alignment explanation
Indices: 47383385--47383433 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
47383375 TATAGTGAGT
*
47383385 ATATCATAGCATATCATGTGC
1 ATATCATAACATATCATGTGC
47383406 ATATCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
47383427 ATATCAT
1 ATATCAT
47383434 GTCCTATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:47383610 original size:27 final size:27
Alignment explanation
Indices: 47383557--47383741 Score: 205
Period size: 27 Copynumber: 7.0 Consensus size: 27
47383547 GGGGCAAAAT
* *
47383557 GGTAATTTTACCC-A-A-GGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
47383581 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
47383608 GGTATTTCTACCCTACAAGGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
47383635 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
47383662 AGTATTTCTACCTTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * **
47383689 AGTAATTTTACATTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47383716 GATATTTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
47383742 TAGTAATTTT
Statistics
Matches: 134, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
24 12 0.09
25 1 0.01
26 1 0.01
27 120 0.90
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:47383639 original size:54 final size:53
Alignment explanation
Indices: 47383582--47383749 Score: 237
Period size: 54 Copynumber: 3.1 Consensus size: 53
47383572 GGGTATCTCG
47383582 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTA
* * *
47383635 GGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCTTATAAGGGTATTTCA
1 -GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT-A
* ** * *
47383690 GTAATTTTACATTACAGGGGTATTTCGATATTTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTA-TTTA
47383744 GTAATT
1 GTAATT
47383750 TTACAAATCG
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
54 97 0.96
55 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (53 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTA
Found at i:47383792 original size:81 final size:79
Alignment explanation
Indices: 47383680--47383916 Score: 218
Period size: 81 Copynumber: 3.0 Consensus size: 79
47383670 TACCTTATAA
* * * * **
47383680 GGGTATTTCAGTAATTTT-ACATTACAGGGGTATTTCGAT-ATTTCTACCCTACAGGGGTATTTT
1 GGGTATTTCAGTAATTTTCAAATCA-AAGGGTATTTCGGTAATTTCTA-CAAACAGGGGTATTTT
47383743 AGTAATTTTACAAATC
64 AGTAATTTTACAAATC
* *
47383759 GGGTTATTTCAGTAATTTTGCAAATCAAAGGGTA--TCGGTAATTTC-ACAAATCAAGTGTATTT
1 GGG-TATTTCAGTAATTTT-CAAATCAAAGGGTATTTCGGTAATTTCTACAAA-CAGGGGTATTT
*
47383821 TAGTAATTTTACAAACC
63 TAGTAATTTTACAAATC
** * *
47383838 AAGGGTATTTTGGTAATTTTACAAA-CCAAGGGTATTTTGGTAATTT-TACAAACTAGGGGTATT
1 --GGGTATTTCAGTAATTTT-CAAATCAAAGGGTATTTCGGTAATTTCTACAAAC-AGGGGTATT
*
47383901 TTGGTAATTTTACAAA
62 TTAGTAATTTTACAAA
47383917 CCAGGGGTAT
Statistics
Matches: 130, Mismatches: 17, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
78 2 0.02
79 41 0.32
80 38 0.29
81 45 0.35
82 4 0.03
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (79 bp):
GGGTATTTCAGTAATTTTCAAATCAAAGGGTATTTCGGTAATTTCTACAAACAGGGGTATTTTAG
TAATTTTACAAATC
Found at i:47383949 original size:81 final size:79
Alignment explanation
Indices: 47383731--47383952 Score: 268
Period size: 81 Copynumber: 2.8 Consensus size: 79
47383721 TTCTACCCTA
* * ** *
47383731 CAGGGGTATTTTAGTAATTTTACAAATC-GGGTTATTTCAGTAATTTTGCAAATCAAAGGGTATC
1 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATC-AAGGGTATC
47383795 GGTAATTTCACAAAT
65 GGTAATTTCACAAAT
* * * *
47383810 CAAGTGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTA--T
* *
47383875 TGGTAATTTTACAAA-
64 CGGTAATTTCACAAAT
* **
47383890 CTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCAAGGGTA
1 C-AGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTA
47383953 AAACAGTAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
79 32 0.26
80 21 0.17
81 68 0.56
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (79 bp):
CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATCG
GTAATTTCACAAAT
Found at i:47383952 original size:27 final size:27
Alignment explanation
Indices: 47383734--47383940 Score: 242
Period size: 27 Copynumber: 7.7 Consensus size: 27
47383724 TACCCTACAG
* *
47383734 GGGTATTTTAGTAATTTTACAAATC--
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
47383759 GGGTTATTTCAGTAATTTTGCAAATCAAA
1 GGG-TATTTTGGTAATTTTACAAA-CCAA
* * *
47383788 GGGTA--TCGGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
47383813 GTGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
47383840 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
47383867 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
47383894 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
47383921 GGGTATTTTGGTAATTTTAC
1 GGGTATTTTGGTAATTTTAC
47383941 TGATCAAGGG
Statistics
Matches: 157, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
25 9 0.06
26 31 0.20
27 112 0.71
28 2 0.01
29 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:47383962 original size:54 final size:54
Alignment explanation
Indices: 47383796--47383963 Score: 149
Period size: 54 Copynumber: 3.1 Consensus size: 54
47383786 AAGGGTATCG
* * * * * *****
47383796 GTAATTTCACAAATCAAGTGTATTTTAGTAATTTTACAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTAAAACA
* *****
47383850 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTAAAACA
* **
47383904 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGA-TCAAGGGTAAAACA
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT-AAGGGTAAAACA
47383958 GTAATT
1 GTAATT
47383964 CTGTAAATCG
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 97 0.99
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTAAAACA
Found at i:47383977 original size:27 final size:27
Alignment explanation
Indices: 47383947--47384085 Score: 188
Period size: 27 Copynumber: 5.1 Consensus size: 27
47383937 TTACTGATCA
* *
47383947 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
47383974 AGGGTAAAATGGTAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
47384001 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
47384028 AGGATAAAACGGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * * *
47384055 AGGGTAAAATGGTAATTTTACAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCG
47384082 AGGG
1 AGGG
47384086 CATTTCAGTA
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTATAAATCG
Found at i:47383979 original size:81 final size:79
Alignment explanation
Indices: 47383734--47383979 Score: 194
Period size: 81 Copynumber: 3.1 Consensus size: 79
47383724 TACCCTACAG
* ** * * *
47383734 GGGTATTTTAGTAATTTTACAAATC--GGGTTATTTCAGTAATTTTGCAAATCAAAGGGT--ATC
1 GGGTATTTTAGTAATTTTACAAACCAAGGG-TATTTTGGTAATTTTACAAA-CCAAGGGTAAAAC
* *
47383795 GGTAATTTCACAAATCAA
64 AGTAATTT--TAAATCAA
* *****
47383813 GTGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTAAAACAG
* *
47383878 TAATTTTACAAACTAG
66 TAATTTTA-AATC-AA
* * ** *
47383894 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCAAGGGTAAAACAG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTAAAACAG
*
47383959 TAATTCTGTAAATCGA
66 TAATT-T-TAAATCAA
47383975 GGGTA
1 GGGTA
47383980 AAATGGTAAT
Statistics
Matches: 134, Mismatches: 25, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
79 31 0.23
80 20 0.15
81 77 0.57
82 4 0.03
83 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (79 bp):
GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTAAAACAG
TAATTTTAAATCAA
Found at i:47383987 original size:81 final size:80
Alignment explanation
Indices: 47383823--47384078 Score: 228
Period size: 81 Copynumber: 3.2 Consensus size: 80
47383813 GTGTATTTTA
* * ****
47383823 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATT-TTAC
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAATCAAGGGTAAAACGGTAATTCTTA-
* * ***
47383887 AAACTAGGGGTATTTTG
65 AATCGA-GGGTAAAATG
* * *
47383904 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCAAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAATCAAGGGTAAAACGGTAATTCT-TA
47383969 AATCGAGGGTAAAATG
65 AATCGAGGGTAAAATG
* * * **** * * *
47383985 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTA-TAAATCGAGGATAAAACGGTAATTCTAT
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACT-AATCAAGGGTAAAACGGTAATTCT-T
*
47384049 AAATTGAGGGTAAAATG
64 AAATCGAGGGTAAAATG
47384066 GTAATTTTACAAA
1 GTAATTTTACAAA
47384079 TTGAGGGCAT
Statistics
Matches: 141, Mismatches: 31, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
80 1 0.01
81 133 0.94
82 5 0.04
83 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (80 bp):
GTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAATCAAGGGTAAAACGGTAATTCTTAA
ATCGAGGGTAAAATG
Found at i:47387904 original size:41 final size:41
Alignment explanation
Indices: 47387783--47387940 Score: 192
Period size: 41 Copynumber: 3.9 Consensus size: 41
47387773 ATTCTTAGCG
*
47387783 CTGGCTCAAAAAGCCCTTCGAGACCAAGCTCGAATTATGACA
1 CTGGCTC-AAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
* * * * * * * * * *
47387825 TTGGCCCGAAGGCCCTTTGAAACTAGGTTCAG-TTATGACA
1 CTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
47387865 CTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
1 CTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
*
47387906 CTGGCTCAAAAGCCCTTCAAGACCAAGCTCGGATT
1 CTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATT
47387941 TAAACTCCGA
Statistics
Matches: 93, Mismatches: 22, Indels: 3
0.79 0.19 0.03
Matches are distributed among these distances:
40 30 0.32
41 58 0.62
42 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
CTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
Found at i:47392589 original size:45 final size:46
Alignment explanation
Indices: 47392540--47392637 Score: 110
Period size: 45 Copynumber: 2.1 Consensus size: 46
47392530 AGCTTTATTA
* * *
47392540 AGCTGAACCGGTAAGC-TCTATTGAGCTG-AATAGTAAGCTCATACG
1 AGCTGAAACGGTAAGCTTC-AATGAGCTGAAACAGTAAGCTCATACG
* * *
47392585 AGCTGAAAGGGTAAGCTTCAATGAGCTGATAACAGTAAGCTCTTATG
1 AGCTGAAACGGTAAGCTTCAATGAGCTGA-AACAGTAAGCTCATACG
47392632 AGCTGA
1 AGCTGA
47392638 TATATCAGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
45 22 0.50
46 2 0.05
47 20 0.45
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (46 bp):
AGCTGAAACGGTAAGCTTCAATGAGCTGAAACAGTAAGCTCATACG
Found at i:47392657 original size:26 final size:24
Alignment explanation
Indices: 47392550--47392661 Score: 99
Period size: 24 Copynumber: 4.7 Consensus size: 24
47392540 AGCTGAACCG
*
47392550 GTAAGCTC-TATTGAGCTG--AATA
1 GTAAGCTCATA-TGAGCTGATAACA
* **
47392572 GTAAGCTCATACGAGCTGA-AAGG
1 GTAAGCTCATATGAGCTGATAACA
47392595 GTAAGCTTCA-ATGAGCTGATAACA
1 GTAAGC-TCATATGAGCTGATAACA
*
47392619 GTAAGCTCTTATGAGCTGATATATCA
1 GTAAGCTCATATGAGCTGATA-A-CA
*
47392645 GTATGCTCATATGAGCT
1 GTAAGCTCATATGAGCT
47392662 ATGGTAAGTC
Statistics
Matches: 74, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
22 14 0.19
23 20 0.27
24 22 0.30
25 1 0.01
26 17 0.23
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (24 bp):
GTAAGCTCATATGAGCTGATAACA
Found at i:47394118 original size:21 final size:21
Alignment explanation
Indices: 47394085--47394138 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
47394075 CAACCATTTA
47394085 CACATT-A-CCAAATCAAAAT
1 CACATTAACCCAAATCAAAAT
47394104 CACATTAACCCAAATCAAAAT
1 CACATTAACCCAAATCAAAAT
47394125 CACA-TAACCACAAA
1 CACATTAACC-CAAA
47394139 CCTTTCACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.19
20 6 0.19
21 20 0.62
ACGTcount: A:0.54, C:0.30, G:0.00, T:0.17
Consensus pattern (21 bp):
CACATTAACCCAAATCAAAAT
Found at i:47394405 original size:47 final size:47
Alignment explanation
Indices: 47394319--47394449 Score: 147
Period size: 47 Copynumber: 2.7 Consensus size: 47
47394309 CACAATTGAT
* ** *
47394319 AAGTACCTATACCATCGCCCGTAGCCAAAACAAAATAACTTATC-CTG
1 AAGTACCTATACCAT-GCCCGTAGCCAAATCAAGGTAACTCATCTCTG
* *
47394366 GAGTACCTATACCATGACCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATG-CCCGTAGCCAAATCAAGGTAACTCATCTCTG
* * *
47394414 AAATACCTATACCATGGCCCATGGCCAAATCAAGGT
1 AAGTACCTATACCAT-GCCCGTAGCCAAATCAAGGT
47394450 CTCATTCGCA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
46 1 0.01
47 36 0.51
48 33 0.46
49 1 0.01
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (47 bp):
AAGTACCTATACCATGCCCGTAGCCAAATCAAGGTAACTCATCTCTG
Found at i:47396378 original size:21 final size:21
Alignment explanation
Indices: 47396352--47396404 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
47396342 ACAGGGGTCC
47396352 CACGCCCGTATGGCTTTGGGA
1 CACGCCCGTATGGCTTTGGGA
47396373 CACGCCCGTATGGCTTTGGGA
1 CACGCCCGTATGGCTTTGGGA
47396394 CACGCCCGTAT
1 CACGCCCGTAT
47396405 TGGCAGGTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.32, G:0.30, T:0.23
Consensus pattern (21 bp):
CACGCCCGTATGGCTTTGGGA
Found at i:47397422 original size:20 final size:20
Alignment explanation
Indices: 47397394--47397436 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
47397384 TACCAACTTT
*
47397394 CAACTTACCAAAATCTTTCA
1 CAACATACCAAAATCTTTCA
* *
47397414 CAACATACCATACTCTTTCA
1 CAACATACCAAAATCTTTCA
47397434 CAA
1 CAA
47397437 AACATTGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.28
Consensus pattern (20 bp):
CAACATACCAAAATCTTTCA
Found at i:47399695 original size:24 final size:24
Alignment explanation
Indices: 47399667--47399716 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
47399657 ACCAAAGCCA
**
47399667 TATGTGACA-CCCCTAATGTGACCC
1 TATGTGACAGCCCAAAAT-TGACCC
47399691 TATGTGACAGCCCAAAATTGACCC
1 TATGTGACAGCCCAAAATTGACCC
47399715 TA
1 TA
47399717 GTCGGGAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (24 bp):
TATGTGACAGCCCAAAATTGACCC
Found at i:47401860 original size:27 final size:27
Alignment explanation
Indices: 47401829--47402006 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
47401819 TAAATTGTAC
47401829 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
47401856 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47401882 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
47401910 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
47401938 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47401965 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47401992 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47402007 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47401943 original size:82 final size:81
Alignment explanation
Indices: 47401830--47401985 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
47401820 AAATTGTACA
*
47401830 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
47401894 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
47401911 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
47401976 TGCGAGTTGA
65 TGCGAATTGA
47401986 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47401997 original size:82 final size:81
Alignment explanation
Indices: 47401826--47402006 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
47401816 GATTAAATTG
*
47401826 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
47401891 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
47401907 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
47401971 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
47401989 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
47402007 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:47406052 original size:47 final size:47
Alignment explanation
Indices: 47406001--47406191 Score: 301
Period size: 47 Copynumber: 4.1 Consensus size: 47
47405991 TTAGGATTTT
* * *
47406001 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
47406048 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
47406095 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
47406142 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
47406189 ATG
1 ATG
47406192 CGAAACGTGT
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 136 1.00
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:47406254 original size:46 final size:46
Alignment explanation
Indices: 47406165--47406255 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
47406155 GAACATGAAT
* * * *
47406165 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
47406211 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
47406256 TGTATATATT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:47406450 original size:37 final size:37
Alignment explanation
Indices: 47406400--47406512 Score: 172
Period size: 37 Copynumber: 3.1 Consensus size: 37
47406390 GGAAATATAT
*
47406400 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
47406437 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
47406474 TCCGGGTAAGACCTGATAACTTCATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
47406511 TC
1 TC
47406513 TGAGCTAAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:47426213 original size:46 final size:46
Alignment explanation
Indices: 47426146--47426319 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
47426136 ATGAACCCGC
*
47426146 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
47426192 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGC-CTAGC-T
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--GCATTCGCAT
* * * * * * *
47426238 ACATCTCA-CGAACTCGGACTCAACTC-ACGAGTTCAGACATTCGCAT
1 CCA--TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
47426284 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
47426320 ATGCCCAAAT
Statistics
Matches: 103, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 3 0.03
45 19 0.18
46 58 0.56
47 19 0.18
48 4 0.04
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:47426312 original size:92 final size:93
Alignment explanation
Indices: 47426154--47426324 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
47426144 GCCCATAAGT
* *
47426154 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
47426219 CGAGCTCGGATGCCTAGCTACATCTCAC
66 CGAGCTCGGATGCCTAGCTACATCTCAC
*
47426247 GAACTCGGACTCAACTC-ACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
47426311 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
47426325 CAAATATCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 57 0.77
93 17 0.23
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGCTACATCTCAC
Found at i:47428286 original size:15 final size:15
Alignment explanation
Indices: 47428238--47428317 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
47428228 TAAAGATAAC
*
47428238 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
47428252 AAGAAATCTA-AGATA
1 AAGAAATCCAGA-ATA
* *
47428267 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
47428282 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
47428297 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
47428312 AAGAAA
1 AAGAAA
47428318 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 8 0.15
15 44 0.83
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:47428326 original size:15 final size:15
Alignment explanation
Indices: 47428249--47428326 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
47428239 AGAAAACCGA
*
47428249 ATAAAGAAATCTAAG
1 ATAAAGAAATCCAAG
* *
47428264 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
47428278 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
47428293 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
47428309 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
47428324 ATA
1 ATA
47428327 CGATACTATG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
14 3 0.06
15 45 0.88
16 3 0.06
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:47431539 original size:40 final size:40
Alignment explanation
Indices: 47431488--47431851 Score: 656
Period size: 40 Copynumber: 9.1 Consensus size: 40
47431478 CATTTGAATG
47431488 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
47431528 ATATCCGGGCTAAGACCCGAAGGCATTGGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47431568 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
47431608 ATATCCGGGTTAAAACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
47431648 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47431688 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47431728 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47431768 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
47431808 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
47431848 ATAT
1 ATAT
47431852 GCGAATTGAT
Statistics
Matches: 310, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 310 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:47431702 original size:120 final size:120
Alignment explanation
Indices: 47431488--47432006 Score: 761
Period size: 120 Copynumber: 4.2 Consensus size: 120
47431478 CATTTGAATG
*
47431488 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
* * *
47431553 TTGGTGCGAACTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
66 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47431608 ATATCCGGGTTAAAACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
*
47431673 TTTGTGCGAATTGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
66 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47431728 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCTGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
47431793 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATGCGAAT
66 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA----T-----TTG-----TGCGAAT
47431858 TGAT
117 TGAT
* * *
47431862 ATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
* * * *
47431927 ATTGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
66 TTTGTGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47431982 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCA
47432007 ATTGAGCTTG
Statistics
Matches: 363, Mismatches: 21, Indels: 30
0.88 0.05 0.07
Matches are distributed among these distances:
120 246 0.68
124 1 0.00
125 2 0.01
129 3 0.01
130 1 0.00
133 2 0.01
134 108 0.30
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (120 bp):
ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:47431854 original size:14 final size:14
Alignment explanation
Indices: 47431837--47431865 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47431827 AAGGCATTTG
47431837 TGCGAATTGATATA
1 TGCGAATTGATATA
47431851 TGCGAATTGATATA
1 TGCGAATTGATATA
47431865 T
1 T
47431866 CCGGGCTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (14 bp):
TGCGAATTGATATA
Found at i:47431879 original size:54 final size:54
Alignment explanation
Indices: 47431797--47431905 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
47431787 AAGGCATTTG
47431797 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATA
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATA
* *
47431851 TGCGAATTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGATATA
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATA
47431905 T
1 T
47431906 CCGGGCTAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (54 bp):
TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATA
Found at i:47431906 original size:40 final size:40
Alignment explanation
Indices: 47431851--47432006 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
47431841 AATTGATATA
* *
47431851 TGCGAATTGATATATCCGGGCTAAGACCCGATGGCGTTTG
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTG
*
47431891 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTG
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTG
*
47431931 TGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCG
1 TGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGCATTTG
* * * *
47431971 TGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
47432007 ATTGAGCTTG
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.02
40 102 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTG
Found at i:47431918 original size:94 final size:94
Alignment explanation
Indices: 47431757--47431945 Score: 326
Period size: 94 Copynumber: 2.0 Consensus size: 94
47431747 AAGGCATTTG
*
47431757 TGCGAATTGATATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
*
47431822 ACCCGAAGGCATTTGTGCGAA-TTGATATA
66 ACCCGAAGGCAATTGTGC-AAGTTGATATA
* *
47431851 TGCGAATTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGATATATCCGGGCTAAG
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
47431916 ACCCGAAGGCAATTGTGCAAGTTGATATA
66 ACCCGAAGGCAATTGTGCAAGTTGATATA
47431945 T
1 T
47431946 CCGGGCTAAG
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
93 2 0.02
94 88 0.98
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (94 bp):
TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
ACCCGAAGGCAATTGTGCAAGTTGATATA
Found at i:47431957 original size:134 final size:134
Alignment explanation
Indices: 47431717--47431984 Score: 448
Period size: 134 Copynumber: 2.0 Consensus size: 134
47431707 AAGGCATTTG
*
47431717 TGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
* * *
47431782 ACCTGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGA
66 ACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGA
47431847 TATA
131 TATA
* *
47431851 TGCGAATTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGATATATCCGGGCTAAG
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
*
47431916 ACCCGAAGGCAATTGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
66 ACCCGAAGGCAATTGTGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTG
*
47431980 CTATA
130 ATATA
47431985 CCCGGGTTAA
Statistics
Matches: 125, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
133 2 0.02
134 123 0.98
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (134 bp):
TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
ACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGA
TATA
Found at i:47431967 original size:174 final size:174
Alignment explanation
Indices: 47431677--47432006 Score: 545
Period size: 174 Copynumber: 1.9 Consensus size: 174
47431667 AAGGCATTTG
* *
47431677 TGCGAATTGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGTTAAG
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
* * *
47431742 ACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGA
66 ACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGA
*
47431807 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATA
131 TATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATA
* *
47431851 TGCGAATTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGATATATCCGGGCTAAG
1 TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
*
47431916 ACCCGAAGGCAATTGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
66 ACCCGAAGGCAATTGTGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTG
* *
47431980 CTATACCCGGGTTAAGACCCGAAGGCA
130 ATATACCCGGGCTAAGACCCGAAGGCA
47432007 ATTGAGCTTG
Statistics
Matches: 144, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
173 2 0.01
174 142 0.99
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (174 bp):
TGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAG
ACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGA
TATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATA
Found at i:47432025 original size:80 final size:80
Alignment explanation
Indices: 47431859--47432033 Score: 235
Period size: 80 Copynumber: 2.2 Consensus size: 80
47431849 TATGCGAATT
* * * *
47431859 GATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAG
* *
47431924 GCAATTGTGCAAGTT
66 GCAATTGAGCAAGTG
* * *
47431939 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAG
**
47432004 GCAATTGAGCTTGTG
66 GCAATTGAGCAAGTG
*
47432019 GTTATATCC-GGCTAA
1 GATATATCCGGGCTAA
47432034 ATTCCGAAGA
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
79 6 0.07
80 77 0.93
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
GATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAG
GCAATTGAGCAAGTG
Found at i:47438823 original size:40 final size:40
Alignment explanation
Indices: 47438772--47439276 Score: 832
Period size: 40 Copynumber: 12.6 Consensus size: 40
47438762 CATTTGAATG
47438772 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
47438812 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47438852 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
47438892 ATATCCGGGTTAAGACCCGAAGCCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
47438932 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47438972 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
47439012 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
47439052 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
47439092 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
47439132 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGGATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
47439172 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTCGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * * *
47439212 ATATTCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
47439252 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
47439277 ATTGAGCTTG
Statistics
Matches: 434, Mismatches: 29, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.00
40 432 1.00
41 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:47442247 original size:46 final size:46
Alignment explanation
Indices: 47442180--47442354 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
47442170 TGAAACCCGC
47442180 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
47442226 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * * *
47442276 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
47442319 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
47442355 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.58
47 24 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:47442316 original size:93 final size:93
Alignment explanation
Indices: 47442188--47442359 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
47442178 GCCCATAAGT
* * *
47442188 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
47442253 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
47442281 GAACTCGGACTCAACTCAATGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
47442346 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
47442360 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:47444547 original size:16 final size:14
Alignment explanation
Indices: 47444515--47444567 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
47444505 ATCGATACCT
47444515 TTTGCATTCATGCA
1 TTTGCATTCATGCA
47444529 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
47444545 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
47444558 TTTGCATTCA
1 TTTGCATTCA
47444568 AGATTATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:47447030 original size:18 final size:18
Alignment explanation
Indices: 47447007--47447084 Score: 70
Period size: 18 Copynumber: 4.3 Consensus size: 18
47446997 CTTTTATTTC
47447007 AAAAAAAAGGAAAAAAGA
1 AAAAAAAAGGAAAAAAGA
*
47447025 AAAAAAAAGGGAAAAAGA
1 AAAAAAAAGGAAAAAAGA
**
47447043 ATTGAAAAA-GAAAAAA-A
1 A-AAAAAAAGGAAAAAAGA
* *
47447060 AAGAAAACGAGAAAAAGAGA
1 AAAAAAAAG-GAAAAA-AGA
47447080 AAAAA
1 AAAAA
47447085 GAAAAAAGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
16 5 0.10
17 2 0.04
18 30 0.62
19 6 0.12
20 5 0.10
ACGTcount: A:0.78, C:0.01, G:0.18, T:0.03
Consensus pattern (18 bp):
AAAAAAAAGGAAAAAAGA
Found at i:47448146 original size:44 final size:44
Alignment explanation
Indices: 47447993--47448616 Score: 277
Period size: 44 Copynumber: 14.2 Consensus size: 44
47447983 CAAGATTTGA
*
47447993 CATCCCTGTGTTTATAGGGAACATA-TCGAAGATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACA-AGTCGAAGATAGCAGATCTGG
* * * ** * **
47448037 CA-CTCTTGTGCTTACAACGAAGC-AGATCAAAGATTTCAG--CATGG
1 CATC-CCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAGATC-TGG
* *
47448081 CATCCCTGTGTTTATAAGGAACAAGTCG-AGAATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAAGTCGAAG-ATAGCAGATCTGG
* *
47448125 CATCCCTGTGTTTATAGGGAAC-AGATCAAAGATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGCAGATCTGG
* * * * * **
47448169 CATTCCTATGCTTACAGCGAAGC-AGATCGAAGATTTC--ATCATGG
1 CATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAGATC-TGG
* * * * *
47448213 CATCCCTATATTTATAGAGAAC-AGATCAAAGATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGCAGATCTGG
* * * * ** * * **
47448257 CATTCATGTGCTTACAGCAAAGCAAATTGAAGATTTCAG--CATGG
1 CATCCCTGTGTTTATAGGGAA-CAAGTCGAAGATAGCAGATC-TGG
* * * *
47448301 CATCCCTGAGTTTATAGGGAACAAGTTGAAGATAACAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATCTGG
* * *
47448345 CATCCCTGTGTTTATAGGGAATATA-TC-AAAATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACA-AGTCGAAGATAGCAGATCTGG
* * * * * **
47448388 CATTCCTGTGCTTACAGCGAAGC-AGATTGAAGATTTCAG--CATGG
1 CATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAGATC-TGG
* *
47448432 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATCTGG
* ** * *
47448476 CATCCCTATGTTTATAGGGAAC-AGATTAAAGATAACAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGCAGATCTGG
* * * ** * **
47448520 CA-CTCCTATGCTTACAATGAAGC-AGATCGAGGATTTCAG--CATGG
1 CATC-CCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAGATC-TGG
* * *
47448564 CATCCCTGTGTTTATAGGAAACAAGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATCTGG
*
47448608 CATCTCTGT
1 CATCCCTGT
47448617 ATTGTCAGAG
Statistics
Matches: 427, Mismatches: 115, Indels: 76
0.69 0.19 0.12
Matches are distributed among these distances:
42 3 0.01
43 99 0.23
44 264 0.62
45 60 0.14
46 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (44 bp):
CATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATCTGG
Found at i:47448235 original size:132 final size:132
Alignment explanation
Indices: 47447985--47448228 Score: 389
Period size: 132 Copynumber: 1.8 Consensus size: 132
47447975 CAAAGAAACA
* * * *
47447985 AGATTTGACATCCCTGTGTTTATAGGGAACATATCGAAGATAGCAGATCTGACACTCTTGTGCTT
1 AGATTTGACATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACACTCCTATGCTT
* *
47448050 ACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAAGGAACAAGTCGAGAATA
66 ACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTATATTTATAAGGAACAAGTCGAGAATA
47448115 GC
131 GC
* *
47448117 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTATGCTT
1 AGATTTGACATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACACTCCTATGCTT
* * *
47448182 ACAGCGAAGCAGATCGAAGATTTCATCATGGCATCCCTATATTTATA
66 ACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTATATTTATA
47448229 GAGAACAGAT
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 101 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (132 bp):
AGATTTGACATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACACTCCTATGCTT
ACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTATATTTATAAGGAACAAGTCGAGAATA
GC
Found at i:47448248 original size:132 final size:132
Alignment explanation
Indices: 47447971--47448259 Score: 388
Period size: 132 Copynumber: 2.2 Consensus size: 132
47447961 GGGACAATGT
* * *
47447971 AGATCAAAGA-AACAAGATTTGACATCCCTGTGTTTATAGGGAACATATCGAAGATAGCAGATCT
1 AGATCAAAGATAGC-AGATTTGACATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCT
* * * *
47448035 GACACTCTTGTGCTTACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAAGG
65 GACACTCCTATGCTTACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTATATTTATAAGG
47448100 AAC
130 AAC
* *
47448103 A-AGTC-GAGAATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATC
1 AGA-TCAAAG-ATAGCAGATTTGACATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATC
* * * *
47448166 TGACATTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCATCATGGCATCCCTATATTTAT-AG
64 TGACACTCCTATGCTTACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTATATTTATAAG
47448230 AGAAC
129 -GAAC
*
47448235 AGATCAAAGATAGCAGATCTGACAT
1 AGATCAAAGATAGCAGATTTGACAT
47448260 TCATGTGCTT
Statistics
Matches: 135, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
131 5 0.04
132 125 0.93
133 5 0.04
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (132 bp):
AGATCAAAGATAGCAGATTTGACATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTG
ACACTCCTATGCTTACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTATATTTATAAGGA
AC
Found at i:47448431 original size:131 final size:132
Alignment explanation
Indices: 47448210--47448611 Score: 626
Period size: 132 Copynumber: 3.1 Consensus size: 132
47448200 GATTTCATCA
* * *
47448210 TGGCATCCCTATATTTATAGAGAACAGATCAAAGATAGCAGATCTGACATTCATGTGCTTACAGC
1 TGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
* * * *
47448275 AAAGCAAATTGAAGATTTCAGCATGGCATCCCTGAGTTTATAGGGAACAAGTTGAAGATAACAGA
66 GAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGA
47448340 TT
131 TT
* * *
47448342 TGGCATCCCTGTGTTTATAGGGAATATATCAAA-ATAGCAGATCTGACATTCCTGTGCTTACAGC
1 TGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
47448406 GAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGA
47448471 TT
131 TT
* * * * **
47448473 TGGCATCCCTATGTTTATAGGGAACAGATTAAAGATAACAGATCTGACACTCCTATGCTTACAAT
1 TGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
* * *
47448538 GAAGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGAAACAAGTTGAAGATAGCAGA
66 GAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGA
47448603 TT
131 TT
47448605 TGGCATC
1 TGGCATC
47448612 TCTGTATTGT
Statistics
Matches: 247, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
131 122 0.49
132 125 0.51
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (132 bp):
TGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
GAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGA
TT
Found at i:47448567 original size:219 final size:219
Alignment explanation
Indices: 47447993--47448603 Score: 551
Period size: 220 Copynumber: 2.8 Consensus size: 219
47447983 CAAGATTTGA
* * * * * * * * *
47447993 CATCCCTGTGTTTATAGGGAACATATCGAAGATAGCAGATCTGACA-CTCTTGTGCTTACAACGA
1 CATCCCTATATTTATAGAGAACAGATCAAAGATAGCAGATCTGACATC-CATATGCTTACAGCAA
* * ** * * * * *
47448057 AGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAAGGAACAAGTCG-AGAATAGCAGAT
65 AGCAAATTAAAGATAACAGCATGACATCCCTGAGCTTACAAGGAACAAGTCGAAG-ATAACAGA-
47448121 TTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTATGCTTACAG
128 TTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTATGCTTACAG
*
47448186 CGAAGCAGATCGAAGATTTCATCATGG
193 CGAAGCAGATCGAAGATTTCAGCATGG
* *
47448213 CATCCCTATATTTATAGAGAACAGATCAAAGATAGCAGATCTGACATTCATGTGCTTACAGCAAA
1 CATCCCTATATTTATAGAGAACAGATCAAAGATAGCAGATCTGACATCCATATGCTTACAGCAAA
* ** * * * * *
47448278 GCAAATTGAAGATTTCAGCATGGCATCCCTGAGTTTATAGGGAACAAGTTGAAGATAACAGATTT
66 GCAAATTAAAGATAACAGCATGACATCCCTGAGCTTACAAGGAACAAGTCGAAGATAACAGA-TT
* * *
47448343 GGCATCCCTGTGTTTATAGGGAATATATCAAA-ATAGCAGATCTGACATTCCTGTGCTTACAGCG
130 GGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTATGCTTACAGCG
*
47448407 AAGCAGATTGAAGATTTCAGCATGG
195 AAGCAGATCGAAGATTTCAGCATGG
* * * ** * * * * * **
47448432 CATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCATCCCTATGTTTATAGGGA
1 CATCCCTATATTTATAGAGAACAGA-TCAAAGATAGCAGATCTGACATCCATATGCTTACAGCAA
* * * **
47448496 A-CAGATTAAAGATAACAG-ATCTGACA-CTCCT-ATGCTTACAATGAAGC-AGATCGAGGATTT
65 AGCAAATTAAAGATAACAGCA--TGACATC-CCTGA-GCTTACAAGGAA-CAAG-TCGAAGATAA
* **
47448556 CAGCA-TGGCATCCCTGTGTTTATAGGAAACA-AGTTGAAGATAGCAGAT
124 CAG-ATTGGCATCCCTGTGTTTATAGGGAACAGA-TCAAAGATAGCAGAT
47448604 TTGGCATCTC
Statistics
Matches: 327, Mismatches: 52, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
217 1 0.00
218 17 0.05
219 147 0.45
220 159 0.49
221 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (219 bp):
CATCCCTATATTTATAGAGAACAGATCAAAGATAGCAGATCTGACATCCATATGCTTACAGCAAA
GCAAATTAAAGATAACAGCATGACATCCCTGAGCTTACAAGGAACAAGTCGAAGATAACAGATTG
GCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTATGCTTACAGCGA
AGCAGATCGAAGATTTCAGCATGG
Found at i:47448578 original size:88 final size:87
Alignment explanation
Indices: 47448122--47448603 Score: 345
Period size: 88 Copynumber: 5.5 Consensus size: 87
47448112 ATAGCAGATT
* *
47448122 TGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAGATCTGACATTCCTATGCTTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAGATTAAAGATAGCAGATCTGACA-TCCTGTGCTTACAGC
*
47448187 GAAGCAGATCGAAGATTTCATCA
65 GAAGCAGATCGAAGATTTCAGCA
* * * * *
47448210 TGGCATCCCTATATTTATAGAGAACAGATCAAAGATAGCAGATCTGACATTCATGTGCTTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAGATTAAAGATAGCAGATCTGACA-TCCTGTGCTTACAGC
* * *
47448275 AAAGCAAATTGAAGATTTCAGCA
65 GAAGCAGATCGAAGATTTCAGCA
* * * * * * *
47448298 TGGCATCCCTGAGTTTATAGGGAACA-AGTTGAAGATAACAGATTTGGCATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TTAAAGATAGCAGATCTGACAT-CCTGTGCTTACAG
* * * * **
47448362 GGAA-TATATC-AAAATAGCAG-A
64 CGAAGCAGATCGAAGATTTCAGCA
* * * * * * ** * *
47448383 TCTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTCAG--CATGGCATCCCTGTGTTTA
1 --TGGCATCCCTGTGTTTATAGGGAA-CAGATTAAAGATAGCAGATC-TGACAT-CCTGTGCTTA
* * * **
47448446 TAGGGAA-CA-AGTTGAAGATAGCAG-A
61 CAGCGAAGCAGA-TCGAAGATTTCAGCA
* * *
47448471 TTTGGCATCCCTATGTTTATAGGGAACAGATTAAAGATAACAGATCTGACACTCCTATGCTTACA
1 --TGGCATCCCTGTGTTTATAGGGAACAGATTAAAGATAGCAGATCTGACA-TCCTGTGCTTACA
** *
47448536 ATGAAGCAGATCGAGGATTTCAGCA
63 GCGAAGCAGATCGAAGATTTCAGCA
* *
47448561 TGGCATCCCTGTGTTTATAGGAAACA-AGTTGAAGATAGCAGAT
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TTAAAGATAGCAGAT
47448604 TTGGCATCTC
Statistics
Matches: 313, Mismatches: 65, Indels: 32
0.76 0.16 0.08
Matches are distributed among these distances:
85 1 0.00
86 8 0.03
87 64 0.20
88 224 0.72
89 14 0.04
90 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (87 bp):
TGGCATCCCTGTGTTTATAGGGAACAGATTAAAGATAGCAGATCTGACATCCTGTGCTTACAGCG
AAGCAGATCGAAGATTTCAGCA
Found at i:47448639 original size:44 final size:44
Alignment explanation
Indices: 47448591--47448829 Score: 188
Period size: 44 Copynumber: 5.4 Consensus size: 44
47448581 GAAACAAGTT
47448591 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
* * *
47448635 GAAGATACCAGATTTGACATCTCTGTATTGGT-GGAGAGCAGATC
1 GAAGATAGCAGATTTGGCATCTCTGTATT-GTCAGAGAGCAGATC
* * * * *
47448679 GAAGACATAGCTGATTTGGCTTTCACGTGT-TTACGTTA-A-AGCAAATC
1 GAAG--ATAGCAGATTTGGC-ATCTC-TGTATT--GTCAGAGAGCAGATC
* * * *
47448726 TAAGAT----GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATC
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
* * * *
47448766 GAAGATAACATATTTGGCATCTTTGTATTGGCAGAGAGCAGATC
1 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
*
47448810 GAAGCCATAGCTGATTTGGC
1 GAAG--ATAGCAGATTTGGC
47448830 TTTCACGTGT
Statistics
Matches: 153, Mismatches: 26, Indels: 30
0.73 0.12 0.14
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 17 0.11
41 8 0.05
44 76 0.50
45 4 0.03
46 22 0.14
47 15 0.10
48 6 0.04
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (44 bp):
GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
Found at i:47448745 original size:131 final size:131
Alignment explanation
Indices: 47448601--47448895 Score: 475
Period size: 131 Copynumber: 2.3 Consensus size: 131
47448591 GAAGATAGCA
*
47448601 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATACCAGATTTGACATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATTGG
**
47448666 TGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGA
66 CAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGA
47448731 T
131 T
* * * * * *
47448732 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAACATATTTGGCATCTTTGTATTGG
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATTGG
* *
47448797 CAGAGAGCAGATCGAAGCCATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
66 CAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGA
47448862 T
131 T
47448863 GATTTGGCATCTCTGTATTAGT-AGAGAGCAGAT
1 GATTTGGCATCTCTGTATT-GTCAGAGAGCAGAT
47448896 AAAAAATACT
Statistics
Matches: 149, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
131 148 0.99
132 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (131 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATTGG
CAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGA
T
Found at i:47449279 original size:27 final size:28
Alignment explanation
Indices: 47449220--47449273 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
47449210 AAATGCCTAA
* *
47449220 AACCCAGCTAAATTACCCATTAACCCGT
1 AACCCAGCTAAACTACCCATAAACCCGT
47449248 AACCCAGCTAAACTACCCA-AAACCCG
1 AACCCAGCTAAACTACCCATAAACCCG
47449274 GTACCCTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.39, C:0.39, G:0.07, T:0.15
Consensus pattern (28 bp):
AACCCAGCTAAACTACCCATAAACCCGT
Found at i:47450469 original size:12 final size:12
Alignment explanation
Indices: 47450401--47450486 Score: 59
Period size: 12 Copynumber: 6.8 Consensus size: 12
47450391 TTTTTGTTTA
47450401 TATATATTTCAT
1 TATATATTTCAT
47450413 TATATTATTT-ATT
1 TATA-TATTTCA-T
* *
47450426 TGTATATTTTAT
1 TATATATTTCAT
*
47450438 CTATAAATTAT-ATTT
1 -TATATATT-TCA--T
47450453 TATATATTTCAT
1 TATATATTTCAT
*
47450465 TATATATTTCCT
1 TATATATTTCAT
47450477 TATATTATTT
1 TATA-TATTT
47450487 TTGTGTATCA
Statistics
Matches: 60, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
12 27 0.45
13 23 0.38
14 9 0.15
15 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (12 bp):
TATATATTTCAT
Found at i:47450728 original size:21 final size:21
Alignment explanation
Indices: 47450709--47450766 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 21
47450699 ATACTTTATC
*
47450709 TATAATACAATTTATATTATTA
1 TATATTAC-ATTTATATTATTA
*
47450731 TATATTACATTTATA-AATT-
1 TATATTACATTTATATTATTA
47450750 T-TATTACATATTATATT
1 TATATTACAT-TTATATT
47450767 TTACCATGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 8 0.26
19 6 0.19
20 3 0.10
21 7 0.23
22 7 0.23
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.53
Consensus pattern (21 bp):
TATATTACATTTATATTATTA
Found at i:47452319 original size:46 final size:47
Alignment explanation
Indices: 47452213--47452334 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
47452203 TGTCTTCGAC
** * *
47452213 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
47452263 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
47452309 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
47452335 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:47454875 original size:24 final size:26
Alignment explanation
Indices: 47454819--47454876 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
47454809 AATCCTTTTC
*
47454819 TCTCTTCTTCTTCCTCCTCCTCTTCTT
1 TCTCTTCTTCTTCCTCCT-CTCTTCCT
* *
47454846 TTTCTTCTTCTTCCTCGT-TC-TCCT
1 TCTCTTCTTCTTCCTCCTCTCTTCCT
47454870 TCTCTTC
1 TCTCTTC
47454877 AACTTCCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 9 0.33
25 2 0.07
27 16 0.59
ACGTcount: A:0.00, C:0.41, G:0.02, T:0.57
Consensus pattern (26 bp):
TCTCTTCTTCTTCCTCCTCTCTTCCT
Found at i:47455499 original size:7 final size:7
Alignment explanation
Indices: 47455482--47455518 Score: 65
Period size: 7 Copynumber: 5.1 Consensus size: 7
47455472 AAATATGGAC
47455482 TAAATTAT
1 TAAA-TAT
47455490 TAAATAT
1 TAAATAT
47455497 TAAATAT
1 TAAATAT
47455504 TAAATAT
1 TAAATAT
47455511 TAAATAT
1 TAAATAT
47455518 T
1 T
47455519 TAAGTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 25 0.86
8 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TAAATAT
Found at i:47455871 original size:21 final size:21
Alignment explanation
Indices: 47455847--47455888 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
47455837 CCCTAAAAAT
*
47455847 CTAACACTTAACCCCTAACCC
1 CTAACACTTAAACCCTAACCC
*
47455868 CTAACCCTTAAACCCTAACCC
1 CTAACACTTAAACCCTAACCC
47455889 TTAAACCGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.48, G:0.00, T:0.19
Consensus pattern (21 bp):
CTAACACTTAAACCCTAACCC
Found at i:47455872 original size:14 final size:14
Alignment explanation
Indices: 47455855--47455895 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
47455845 ATCTAACACT
*
47455855 TAACCCCTAACCCC
1 TAACCCCTAAACCC
*
47455869 TAACCCTTAAACCC
1 TAACCCCTAAACCC
*
47455883 TAACCCTTAAACC
1 TAACCCCTAAACC
47455896 GTAATCCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.20
Consensus pattern (14 bp):
TAACCCCTAAACCC
Found at i:47455911 original size:22 final size:22
Alignment explanation
Indices: 47455883--47455936 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
47455873 CCTTAAACCC
*
47455883 TAACCCTTAAA-CCGTAATCCA
1 TAACCCTTAAACCCATAATCCA
47455904 TAATCCC-TAAACCCATAATCCA
1 TAA-CCCTTAAACCCATAATCCA
*
47455926 TAAACCTTAAA
1 TAACCCTTAAA
47455937 ATAGTAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 9 0.32
22 19 0.68
ACGTcount: A:0.43, C:0.31, G:0.02, T:0.24
Consensus pattern (22 bp):
TAACCCTTAAACCCATAATCCA
Found at i:47455921 original size:15 final size:15
Alignment explanation
Indices: 47455901--47455931 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47455891 AAACCGTAAT
*
47455901 CCATAATCCCTAAAC
1 CCATAATCCATAAAC
47455916 CCATAATCCATAAAC
1 CCATAATCCATAAAC
47455931 C
1 C
47455932 TTAAAATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.19
Consensus pattern (15 bp):
CCATAATCCATAAAC
Found at i:47455967 original size:21 final size:21
Alignment explanation
Indices: 47455941--47455986 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
47455931 CTTAAAATAG
**
47455941 TAAATCATACACTTTAAACCC
1 TAAATCATACACCCTAAACCC
*
47455962 TAAATCATATACCCTAAACCC
1 TAAATCATACACCCTAAACCC
47455983 TAAA
1 TAAA
47455987 CTATAAAGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAATCATACACCCTAAACCC
Found at i:47456127 original size:22 final size:20
Alignment explanation
Indices: 47456085--47456146 Score: 52
Period size: 22 Copynumber: 2.9 Consensus size: 20
47456075 ACTAATTAAT
* *
47456085 CTAAACCTTAAACTCTTAATCC
1 CTAAACCATAAAC-CTGAAT-C
*
47456107 CTAAACCCTAAACCATGAATC
1 CTAAACCATAAACC-TGAATC
*
47456128 CTAAAACATAAACCCTGAA
1 CTAAACCATAAA-CCTGAA
47456147 CCATGAACCA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.44, C:0.31, G:0.03, T:0.23
Consensus pattern (20 bp):
CTAAACCATAAACCTGAATC
Found at i:47456132 original size:14 final size:14
Alignment explanation
Indices: 47456110--47456160 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
47456100 TTAATCCCTA
47456110 AACCCTAAACCATG
1 AACCCTAAACCATG
* * *
47456124 AATCCTAAAACATA
1 AACCCTAAACCATG
*
47456138 AACCCTGAACCATG
1 AACCCTAAACCATG
47456152 AACCACTAA
1 AACC-CTAA
47456161 CCCTTAACCC
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 25 0.89
15 3 0.11
ACGTcount: A:0.47, C:0.31, G:0.06, T:0.16
Consensus pattern (14 bp):
AACCCTAAACCATG
Found at i:47456132 original size:21 final size:21
Alignment explanation
Indices: 47456106--47456146 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
47456096 ACTCTTAATC
* *
47456106 CCTAAACCCTAAACCATGAAT
1 CCTAAAACATAAACCATGAAT
*
47456127 CCTAAAACATAAACCCTGAA
1 CCTAAAACATAAACCATGAA
47456147 CCATGAACCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.32, G:0.05, T:0.17
Consensus pattern (21 bp):
CCTAAAACATAAACCATGAAT
Found at i:47456181 original size:21 final size:21
Alignment explanation
Indices: 47456138--47456212 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
47456128 CTAAAACATA
* * * *
47456138 AACCCTGAACCATGAACCACT
1 AACCCTTAACCCTTAACCCCT
47456159 AACCCTTAACCCTTAACCCCT
1 AACCCTTAACCCTTAACCCCT
*
47456180 AACACCTAAACGACCTTAAACCCC-
1 AAC-CCTTAAC--CCTT-AACCCCT
47456204 AACCCTTAA
1 AACCCTTAA
47456213 ACCACCCTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
21 20 0.45
22 6 0.14
23 5 0.11
24 7 0.16
25 6 0.14
ACGTcount: A:0.37, C:0.41, G:0.04, T:0.17
Consensus pattern (21 bp):
AACCCTTAACCCTTAACCCCT
Found at i:47456221 original size:25 final size:26
Alignment explanation
Indices: 47456167--47456226 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
47456157 CTAACCCTTA
*
47456167 ACCCTT-AACCCCTAACACCTAAACG
1 ACCCTTAAACCCCTAACACCTAAACC
47456192 A-CCTTAAACCCC-AAC-CCTTAAACC
1 ACCCTTAAACCCCTAACACC-TAAACC
47456216 ACCCTTAAACC
1 ACCCTTAAACC
47456227 ATAATCCATA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
23 2 0.06
24 13 0.42
25 16 0.52
ACGTcount: A:0.37, C:0.45, G:0.02, T:0.17
Consensus pattern (26 bp):
ACCCTTAAACCCCTAACACCTAAACC
Found at i:47456708 original size:79 final size:81
Alignment explanation
Indices: 47456605--47456754 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 81
47456595 TTAATTTTTT
* * *
47456605 GCGGCGTTTTTTAAAAGGCGCCGCTAATACTTGATCTTTAGTGGTGCTTTTCA-AAAAACGCCGC
1 GCGGCATTTTTTAAAAGGCGCCGCTAATACTTGATCTTTAGCGGTGCTTTTCATAAAAACGCCAC
47456669 TAAAAATGAACCTATA
66 TAAAAATGAACCTATA
* * * * **
47456685 GCGGCATTTTTTGAAA-GCGCCGCTAGTGCTTGATCTTTAGCGGTGTTTTTCATTCAAACGCCAC
1 GCGGCATTTTTTAAAAGGCGCCGCTAATACTTGATCTTTAGCGGTGCTTTTCATAAAAACGCCAC
47456749 TAAAAA
66 TAAAAA
47456755 CGCCGCTAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
79 32 0.53
80 28 0.47
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (81 bp):
GCGGCATTTTTTAAAAGGCGCCGCTAATACTTGATCTTTAGCGGTGCTTTTCATAAAAACGCCAC
TAAAAATGAACCTATA
Found at i:47458888 original size:22 final size:22
Alignment explanation
Indices: 47458836--47458889 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
47458826 GCCAATTATT
* *
47458836 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTACGCCAAC
* *
47458858 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTACGCCAAC
47458880 CTGATTATGG
1 CTGATTATGG
47458890 TTGTGTGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTACGCCAAC
Found at i:47460054 original size:10 final size:10
Alignment explanation
Indices: 47460035--47460066 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
47460025 AATTATTTCA
*
47460035 AAAAGGTTTG
1 AAAAGATTTG
47460045 AAAAGATTTG
1 AAAAGATTTG
47460055 AAAAGATTTG
1 AAAAGATTTG
47460065 AA
1 AA
47460067 GTATTTGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (10 bp):
AAAAGATTTG
Found at i:47461843 original size:27 final size:27
Alignment explanation
Indices: 47461781--47461878 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
47461771 GTAGGCTAGT
* *
47461781 ATTACTGAAATACCCTTGAAGG-GT-A
1 ATTACTGAAATACCCTTGTAGGATTGA
*
47461806 AGTTACTGAAATGCCCTTGTAGGATTGA
1 A-TTACTGAAATACCCTTGTAGGATTGA
* * *
47461834 ATTACTGAAATGCCCCTGTA-GAGTAGA
1 ATTACTGAAATACCCTTGTAGGA-TTGA
47461861 ATTACTGAAATACCCTTG
1 ATTACTGAAATACCCTTG
47461879 GTTTACAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
25 1 0.02
26 21 0.34
27 38 0.61
28 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (27 bp):
ATTACTGAAATACCCTTGTAGGATTGA
Found at i:47461890 original size:27 final size:27
Alignment explanation
Indices: 47461860--47462207 Score: 215
Period size: 27 Copynumber: 12.9 Consensus size: 27
47461850 TGTAGAGTAG
* *
47461860 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTGCAA
* *
47461887 AATTGCT-AAATACCCTTTG-TTTACAA
1 AATTACTGAAATACCC-TTGATTTGCAA
** * * *
47461913 AATTACCAAAATACCCTCGATTAGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
** **
47461940 AATTACCAAAATATCCC-TGATTTGTGA
1 AATTACTGAAATA-CCCTTGATTTGCAA
* * * *
47461967 AATTATTGAAATACCCTCGACTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
* * *
47461994 AATTTCTGAAATA-CCTTCGAATTGTAA
1 AATTACTGAAATACCCTT-GATTTGCAA
** * *
47462021 AATTTTTGAAATACCCTTAATTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
* * * *
47462048 AATTAC-CAGAATACCCCTAATTTGGAA
1 AATTACTGA-AATACCCTTGATTTGCAA
** * *
47462075 AATTACCAAAATACCCCTGATTTGGAA
1 AATTACTGAAATACCCTTGATTTGCAA
*** *
47462102 AATTAAAAAAATACCCTTGATTTACAA
1 AATTACTGAAATACCCTTGATTTGCAA
*
47462129 AATTACAGAAATACCCTTGACTTT-CAAA
1 AATTACTGAAATACCCTTGA-TTTGC-AA
* * *
47462157 AATTACAGAAATACCTTTGGTTTGCAA
1 AATTACTGAAATACCCTTGATTTGCAA
*
47462184 AATTA-TCGAAATACCCTTGGTTTG
1 AATTACT-GAAATACCCTTGATTTG
47462208 TAGATTTTCC
Statistics
Matches: 267, Mismatches: 41, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
26 29 0.11
27 206 0.77
28 32 0.12
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTGCAA
Found at i:47462513 original size:41 final size:41
Alignment explanation
Indices: 47462466--47462590 Score: 205
Period size: 41 Copynumber: 3.0 Consensus size: 41
47462456 GGAGGAAGAA
*
47462466 ATTGAGGATCACATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
** *
47462507 ATTGAGGATTGCATGGTTTCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
*
47462548 ATTAAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
47462589 AT
1 AT
47462591 GGCTTTTAAG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:47465191 original size:48 final size:48
Alignment explanation
Indices: 47465139--47465244 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
47465129 TCGAAACGAT
*
47465139 TTAATAATTAATTCATTAGGTACCTTACAATTATAATGCAAGAATAAC
1 TTAATAATGAATTCATTAGGTACCTTACAATTATAATGCAAGAATAAC
* *
47465187 TTAATCATGATTTCATTAGGTACCTTACAATTATAATGCAAGAATAAC
1 TTAATAATGAATTCATTAGGTACCTTACAATTATAATGCAAGAATAAC
*
47465235 TTAATCATGA
1 TTAATAATGA
47465245 TTTTACTTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (48 bp):
TTAATAATGAATTCATTAGGTACCTTACAATTATAATGCAAGAATAAC
Found at i:47465245 original size:48 final size:48
Alignment explanation
Indices: 47465150--47465247 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
47465140 TAATAATTAA
47465150 TTCATTAGGTACCTTACAATTATAATGCAAGAATAACTTAATCATGAT
1 TTCATTAGGTACCTTACAATTATAATGCAAGAATAACTTAATCATGAT
47465198 TTCATTAGGTACCTTACAATTATAATGCAAGAATAACTTAATCATGAT
1 TTCATTAGGTACCTTACAATTATAATGCAAGAATAACTTAATCATGAT
47465246 TT
1 TT
47465248 TACTTATTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (48 bp):
TTCATTAGGTACCTTACAATTATAATGCAAGAATAACTTAATCATGAT
Found at i:47467135 original size:39 final size:39
Alignment explanation
Indices: 47467072--47467150 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
47467062 TTTATGAAAA
* *
47467072 CTTAAAGACAATTAGGAGACAAGTGATGGCTAAAAATTG
1 CTTAAAGACAATTAAGAGAAAAGTGATGGCTAAAAATTG
*
47467111 CTTAAAGATAATTAAGAGAAAAGTGATGGCTAAAAATTG
1 CTTAAAGACAATTAAGAGAAAAGTGATGGCTAAAAATTG
47467150 C
1 C
47467151 AAAGGTTCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.24
Consensus pattern (39 bp):
CTTAAAGACAATTAAGAGAAAAGTGATGGCTAAAAATTG
Found at i:47468419 original size:30 final size:30
Alignment explanation
Indices: 47468404--47468590 Score: 244
Period size: 30 Copynumber: 6.4 Consensus size: 30
47468394 AACCAAAATG
*
47468404 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
47468434 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
47468464 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
47468489 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* *
47468519 AGAATCAGAATCAGTATTAGTAACATAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
47468549 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
47468580 AGAATTAGAAT
1 AGAATCAGAAT
47468591 ATGAATGCAA
Statistics
Matches: 138, Mismatches: 9, Indels: 19
0.83 0.05 0.11
Matches are distributed among these distances:
24 2 0.01
25 19 0.14
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.01
30 90 0.65
31 22 0.16
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:47468504 original size:85 final size:85
Alignment explanation
Indices: 47468404--47468590 Score: 347
Period size: 85 Copynumber: 2.2 Consensus size: 85
47468394 AACCAAAATG
47468404 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
47468469 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
* *
47468489 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACATAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
47468554 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
*
47468574 AGAATCAGAATTAGAAT
1 AGAATCAGAATCAGAAT
47468591 ATGAATGCAA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 99 1.00
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGAC
Found at i:47468584 original size:6 final size:6
Alignment explanation
Indices: 47468404--47468565 Score: 165
Period size: 6 Copynumber: 26.8 Consensus size: 6
47468394 AACCAAAATG
*
47468404 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
47468452 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
47468501 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C ATAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
47468549 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
47468566 TAGGTGACAG
Statistics
Matches: 131, Mismatches: 12, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
5 10 0.08
6 111 0.85
7 8 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Done.