Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 143 of 344
Found at i:47707084 original size:11 final size:11
Alignment explanation
Indices: 47707068--47707093 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
47707058 ATTTCAATGG
47707068 TACACGATTTA
1 TACACGATTTA
47707079 TACACGATTTA
1 TACACGATTTA
47707090 TACA
1 TACA
47707094 TTCACAAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (11 bp):
TACACGATTTA
Found at i:47724146 original size:28 final size:29
Alignment explanation
Indices: 47724115--47724169 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 29
47724105 GATTTTTGAC
*
47724115 AAAAATGTCAATT-AAGGATTAAATTTAG
1 AAAAATGTAAATTGAAGGATTAAATTTAG
* * *
47724143 AAAAGTGTAAATTGAGGGGTTAAATTT
1 AAAAATGTAAATTGAAGGATTAAATTT
47724170 TCAAATAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 11 0.50
29 11 0.50
ACGTcount: A:0.45, C:0.02, G:0.20, T:0.33
Consensus pattern (29 bp):
AAAAATGTAAATTGAAGGATTAAATTTAG
Found at i:47725692 original size:29 final size:29
Alignment explanation
Indices: 47725659--47725724 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 29
47725649 CAAGGGGGAG
**
47725659 AGTAATGGGCCATAGCTGTTGATGTGGAA
1 AGTAATGCACCATAGCTGTTGATGTGGAA
*
47725688 AGTAATGCACCATAGCTGTTGATGTTGAA
1 AGTAATGCACCATAGCTGTTGATGTGGAA
47725717 AGTAATGC
1 AGTAATGC
47725725 GCCTACTCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.30, C:0.12, G:0.29, T:0.29
Consensus pattern (29 bp):
AGTAATGCACCATAGCTGTTGATGTGGAA
Found at i:47733929 original size:68 final size:68
Alignment explanation
Indices: 47733778--47733942 Score: 174
Period size: 68 Copynumber: 2.4 Consensus size: 68
47733768 CTAGTCAATT
* * * *
47733778 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGTGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGTGACCTAGCAACA
**
47733843 TTTA
65 CATA
* *
47733847 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCAA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGTGACCTAGCAA
47733909 CTACATA
63 C-ACATA
*
47733916 GTATCTCGTAGCTCTCTTGTATACATG
1 -TATCTCGTAGCTCTCTTGTCTACATG
47733943 ATGTGCATTC
Statistics
Matches: 81, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
68 42 0.52
69 7 0.09
70 6 0.07
71 26 0.32
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGTGACCTAGCAACAC
ATA
Found at i:47738874 original size:29 final size:28
Alignment explanation
Indices: 47738785--47738897 Score: 111
Period size: 29 Copynumber: 4.0 Consensus size: 28
47738775 CCCGTATCTA
* *
47738785 GCCCATTAAGCCCAATCATATTCATATG
1 GCCCATTAGGCCCAATCACATTCATATG
* * * *
47738813 GCCAACTAGGCCCAAACCACCTGT-ATATG
1 GCCCATTAGGCCC-AATCACAT-TCATATG
*
47738842 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTCATATG
* *
47738871 GCCCGTTAGGCCCAGTCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
47738898 TCATGCTCAC
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
28 23 0.33
29 45 0.65
30 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATG
Found at i:47740405 original size:16 final size:16
Alignment explanation
Indices: 47740380--47740412 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
47740370 GAAAATTCTA
*
47740380 GATTTTAGGATTTTTG
1 GATTTCAGGATTTTTG
47740396 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
47740412 G
1 G
47740413 GGCGTTGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:47746165 original size:28 final size:29
Alignment explanation
Indices: 47746122--47746236 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
47746112 TACCCGTATC
* *
47746122 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * * *
47746150 TGACCCATTAGGCCCAAACCACCTAT-ATG
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
47746179 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
** *
47746208 TGGCCTGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
47746236 T
1 T
47746237 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
28 26 0.37
29 43 0.61
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:47749069 original size:45 final size:45
Alignment explanation
Indices: 47748950--47749069 Score: 141
Period size: 45 Copynumber: 2.7 Consensus size: 45
47748940 ATCCATAATG
* * * ** *
47748950 AACTCGGACCAACTCAATGAGCTCAGATGCTTCACATATACCGCA
1 AACTTGGACCAACTCAACGAGCTTAGATTTTTCACATATACCACA
* * * * *
47748995 AATTTGGACCAACTCAACAAGTTTGGATTTTTCACATATATCACA
1 AACTTGGACCAACTCAACGAGCTTAGATTTTTCACATATACCACA
47749040 AACTTGGACCAACTCAACGAGCTTAGATTT
1 AACTTGGACCAACTCAACGAGCTTAGATTT
47749070 CTTAATTCCT
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (45 bp):
AACTTGGACCAACTCAACGAGCTTAGATTTTTCACATATACCACA
Found at i:47752459 original size:30 final size:30
Alignment explanation
Indices: 47752425--47752485 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
47752415 TCCTTAACTC
47752425 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
47752455 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
47752485 A
1 A
47752486 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:47755505 original size:15 final size:15
Alignment explanation
Indices: 47755431--47755503 Score: 101
Period size: 15 Copynumber: 4.9 Consensus size: 15
47755421 GAGATTACAT
*
47755431 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
47755446 GAAGTCCAAGACAAA
1 GAAATCCAAGATAAA
*
47755461 GAAATCCTAGATAAA
1 GAAATCCAAGATAAA
*
47755476 GAAATCCAAGATACA
1 GAAATCCAAGATAAA
47755491 GAAATCCAAGATA
1 GAAATCCAAGATA
47755504 CAATATCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 50 1.00
ACGTcount: A:0.56, C:0.16, G:0.15, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:47757439 original size:76 final size:76
Alignment explanation
Indices: 47757313--47757476 Score: 265
Period size: 76 Copynumber: 2.2 Consensus size: 76
47757303 GGACAGGGGG
* * *
47757313 ACACGCCCGTGTCTTTAGGTCGTGTAACTCTCTATTAATGACGTCTGCAAAATAAATTGAACCAC
1 ACACGCCCGTGTCCTTAGGCCGTGTAACTCTCTATTAATGACGCCTGCAAAATAAATTGAACCAC
47757378 ACAGCCAGGCC
66 ACAGCCAGGCC
* * *
47757389 ACACGCCTGTGTCCTTAGGCCGTGTAACTCTCTATTTATGATGCCTGCAAAATAAATTGAACCAC
1 ACACGCCCGTGTCCTTAGGCCGTGTAACTCTCTATTAATGACGCCTGCAAAATAAATTGAACCAC
47757454 ACAGCCAGGCC
66 ACAGCCAGGCC
*
47757465 ACACACCCGTGT
1 ACACGCCCGTGT
47757477 GCTAGGTCGT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 80 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (76 bp):
ACACGCCCGTGTCCTTAGGCCGTGTAACTCTCTATTAATGACGCCTGCAAAATAAATTGAACCAC
ACAGCCAGGCC
Found at i:47759441 original size:45 final size:45
Alignment explanation
Indices: 47759392--47759482 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
47759382 CTCGGATGCT
* * *
47759392 TCACATATACCACGAACTTGGACCAACTCAACAAGTTCAGATTTC
1 TCACATATACCACGAACTCGGACCAACTCAACAAGCTCAAATTTC
*
47759437 TCACATATATCACGAACTCGGACCAACTCAACAAGCTCAAATTTC
1 TCACATATACCACGAACTCGGACCAACTCAACAAGCTCAAATTTC
47759482 T
1 T
47759483 TAATTCCAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.36, C:0.30, G:0.10, T:0.24
Consensus pattern (45 bp):
TCACATATACCACGAACTCGGACCAACTCAACAAGCTCAAATTTC
Found at i:47759728 original size:14 final size:16
Alignment explanation
Indices: 47759696--47759734 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
47759686 ATTTACATAA
47759696 CATATATCACATATAT
1 CATATATCACATATAT
*
47759712 CATATATCAC-T-TGT
1 CATATATCACATATAT
47759726 CATATATCA
1 CATATATCA
47759735 TCAGTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.38
Consensus pattern (16 bp):
CATATATCACATATAT
Found at i:47761788 original size:43 final size:42
Alignment explanation
Indices: 47761706--47761841 Score: 152
Period size: 42 Copynumber: 3.2 Consensus size: 42
47761696 TGTGATTTTG
* * *
47761706 TGTAAGACCACGTCTGGGACGTTGGCATC-AACTTATGATTTACA
1 TGTAAGACCATGTCTGGGAC-ATGGCATCGTA-TT-TGATTTACA
*
47761750 TGTAAGACCATGTCTGGGACATCGGTATCGTATTTGATTT-CA
1 TGTAAGACCATGTCTGGGACAT-GGCATCGTATTTGATTTACA
*
47761792 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATCG-TATTTGATTTACA
47761835 TGTAAGA
1 TGTAAGA
47761842 TCACGTCTAG
Statistics
Matches: 81, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
42 30 0.37
43 24 0.30
44 26 0.32
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGTATTTGATTTACA
Found at i:47761806 original size:42 final size:43
Alignment explanation
Indices: 47761692--47761841 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 43
47761682 TAGGATTTTT
* ** *
47761692 GATATGTGATTTTGTGTAAGACCACGTCTGGGAC-GTTGGCATC
1 GATATTTGATTTCATGTAAGACCATGTCTGGGACAG-TGGCATC
*
47761735 -A-ACTTATGATTTACATGTAAGACCATGTCTGGGACA-TCGGTATC
1 GATA-TT-TGATTT-CATGTAAGACCATGTCTGGGACAGT-GGCATC
*
47761779 G-TATTTGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATATTTGATTTCATGTAAGACCATGTCTGGGACAGTGGCATC
*
47761821 GATATTTGATTACATGTAAGA
1 GATATTTGATTTCATGTAAGA
47761842 TCACGTCTAG
Statistics
Matches: 90, Mismatches: 8, Indels: 18
0.78 0.07 0.16
Matches are distributed among these distances:
41 1 0.01
42 30 0.33
43 32 0.36
44 26 0.29
45 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
GATATTTGATTTCATGTAAGACCATGTCTGGGACAGTGGCATC
Found at i:47764192 original size:46 final size:46
Alignment explanation
Indices: 47764142--47764267 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
47764132 TGGTTGAGCA
* *
47764142 TCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
*
47764188 TCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* *
47764234 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTA
47764268 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
Found at i:47764529 original size:19 final size:20
Alignment explanation
Indices: 47764492--47764529 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
47764482 ATAAGGTGGT
47764492 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
47764512 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
47764530 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:47766157 original size:16 final size:16
Alignment explanation
Indices: 47766136--47766167 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
47766126 GTGTTACATT
47766136 TGGTTGGTATCAGAGC
1 TGGTTGGTATCAGAGC
*
47766152 TGGTTGGTATTAGAGC
1 TGGTTGGTATCAGAGC
47766168 ATGATTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.09, G:0.38, T:0.34
Consensus pattern (16 bp):
TGGTTGGTATCAGAGC
Found at i:47767268 original size:37 final size:37
Alignment explanation
Indices: 47767209--47767310 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
47767199 AGCTCAGACG
* * *
47767209 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
47767246 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
47767283 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
47767311 TAGAGCTCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:47767516 original size:47 final size:47
Alignment explanation
Indices: 47767429--47767930 Score: 799
Period size: 47 Copynumber: 10.6 Consensus size: 47
47767419 CCCTTCGGGA
* * * * * *
47767429 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
47767476 CCTGTCGCATATATACACTTTCACATTCATGACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47767523 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47767570 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47767617 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47767663 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47767712 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47767759 CTTATCACATATATCCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47767806 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47767855 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47767902 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
47767931 TATTCAAATA
Statistics
Matches: 423, Mismatches: 25, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
46 16 0.04
47 299 0.71
48 30 0.07
49 78 0.18
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47767748 original size:189 final size:188
Alignment explanation
Indices: 47767429--47767930 Score: 817
Period size: 189 Copynumber: 2.6 Consensus size: 188
47767419 CCCTTCGGGA
* * * * * * *
47767429 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCGCATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
47767494 TTTCACATTCATGACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47767559 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47767617 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
*
47767681 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
47767746 TCGGCTATTAGGCCTTATCACATATATCCACTTTCACATTCATCACATCGGCCATTAGGC
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47767806 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
47767871 ACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATT
47767931 TATTCAAATA
Statistics
Matches: 290, Mismatches: 17, Indels: 10
0.91 0.05 0.03
Matches are distributed among these distances:
187 11 0.04
188 34 0.12
189 137 0.47
190 45 0.16
191 29 0.10
192 34 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47773220 original size:28 final size:28
Alignment explanation
Indices: 47773157--47773338 Score: 330
Period size: 28 Copynumber: 6.5 Consensus size: 28
47773147 ATATTAAGTC
* *
47773157 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
47773184 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
47773212 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
47773240 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
47773268 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
47773296 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
47773324 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47773339 GTACAATTTA
Statistics
Matches: 151, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 21 0.14
28 130 0.86
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:47775736 original size:40 final size:40
Alignment explanation
Indices: 47775465--47775710 Score: 359
Period size: 40 Copynumber: 6.2 Consensus size: 40
47775455 CCAGCATGAT
* * * * * * *
47775465 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*** *
47775505 TGCTCTTCGGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
*
47775545 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47775585 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47775625 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
47775665 TGCTCTTCGGAACTTAGTTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47775705 TGCTCT
1 TGCTCT
47775711 CCGGGATTTA
Statistics
Matches: 191, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 189 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:47777066 original size:37 final size:37
Alignment explanation
Indices: 47776998--47777105 Score: 144
Period size: 37 Copynumber: 2.9 Consensus size: 37
47776988 ACCTTTAGCT
* * * * *
47776998 CAGACGAAATCTCCACATGAAGTTATTGGGTCTTACC
1 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
47777035 TAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
47777072 CGGACATAATCTCCACACGTAGTCATCGGGTCTT
1 CAGACAAAATCTCCACACGTAGTCATCGGGTCTT
47777106 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:47777349 original size:47 final size:47
Alignment explanation
Indices: 47777223--47777766 Score: 879
Period size: 47 Copynumber: 11.6 Consensus size: 47
47777213 CCCTTCGGGA
*
47777223 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47777270 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47777319 CTTATCACATATATACACTTTCACATTCATCACAT----C----GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47777358 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47777405 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47777452 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47777499 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47777548 CTTATCACATTTATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47777595 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47777642 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47777691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47777738 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
47777767 TATTCAAATA
Statistics
Matches: 464, Mismatches: 17, Indels: 30
0.91 0.03 0.06
Matches are distributed among these distances:
39 38 0.08
43 1 0.00
47 271 0.58
49 154 0.33
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47777549 original size:96 final size:94
Alignment explanation
Indices: 47777355--47777766 Score: 707
Period size: 96 Copynumber: 4.3 Consensus size: 94
47777345 TCATCACATC
47777355 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
47777420 CACTTTCACATTCATCACATCGGCTATTA
66 CACTTTCACATTCATCACATCGGCCATTA
47777449 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
* *
47777514 TACACTTTCACATTCATCACATTGGCCATTC
64 TACACTTTCACATTCATCACATCGGCCATTA
* *
47777545 GGCCTTATCACATTTATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
47777610 CACTTTCACATTCATCACATCGGCCATTA
66 CACTTTCACATTCATCACATCGGCCATTA
* *
47777639 GGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
47777704 TACACTTTCACATTCATCACATCGGCCATTA
64 TACACTTTCACATTCATCACATCGGCCATTA
47777735 GGCCTTATCACATATATATACACTTTCACATT
1 GGCCTTATCAC--ATATATACACTTTCACATT
47777767 TATTCAAATA
Statistics
Matches: 303, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
94 103 0.34
96 200 0.66
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (94 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGCCATTA
Found at i:47777611 original size:143 final size:143
Alignment explanation
Indices: 47777355--47777766 Score: 756
Period size: 143 Copynumber: 2.9 Consensus size: 143
47777345 TCATCACATC
* *
47777355 GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
47777418 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATC
66 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATC
47777483 ACATCGGCCATTA
131 ACATCGGCCATTA
*
47777496 GGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATTTA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
47777561 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATC
66 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATC
47777626 ACATCGGCCATTA
131 ACATCGGCCATTA
47777639 GGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
*
47777704 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
66 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATT
47777767 TATTCAAATA
Statistics
Matches: 262, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
141 11 0.04
143 232 0.89
145 19 0.07
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (143 bp):
GGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
TACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATC
ACATCGGCCATTA
Found at i:47781817 original size:40 final size:40
Alignment explanation
Indices: 47781773--47781981 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
47781763 CCAGCATGAT
* * * * * * * *
47781773 TGCTCTTCGGGACCTAGCCCGAATATAACACCAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*** *
47781813 TGCTCTTCGGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
47781853 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
47781893 TGCTCTTCGGAACTTAGTCCGAATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47781933 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47781973 TGCTCTTCG
1 TGCTCTTCG
47781982 AATTTAGCCC
Statistics
Matches: 152, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 150 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:47781923 original size:80 final size:79
Alignment explanation
Indices: 47781749--47781990 Score: 288
Period size: 80 Copynumber: 3.0 Consensus size: 79
47781739 GCACGAAGGC
* * * * * * * * * *
47781749 CCGAATACACGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCGAATATAACACCAGCACAAAT
1 CCGAATACA--TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAAT
***
47781814 GCTCTTCGGGGTTTAG
64 GCTCTTCGGAACTTAG
* * *
47781830 CACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 C-CGAATACATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
47781895 CTCTTCGGAACTTAG
65 CTCTTCGGAACTTAG
47781910 TCCGAATACATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 -CCGAATACATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
*
47781975 CTCTTC-GAATTTAG
65 CTCTTCGGAACTTAG
47781989 CC
1 CC
47781991 CAGACATTTC
Statistics
Matches: 139, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 2 0.01
79 7 0.05
80 122 0.88
81 2 0.01
82 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (79 bp):
CCGAATACATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
TCTTCGGAACTTAG
Found at i:47783326 original size:37 final size:37
Alignment explanation
Indices: 47783267--47783368 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
47783257 AGCTCAGACG
* * *
47783267 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
47783304 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
47783341 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
47783369 TAGAGCTCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:47783574 original size:47 final size:47
Alignment explanation
Indices: 47783487--47783985 Score: 754
Period size: 47 Copynumber: 10.6 Consensus size: 47
47783477 CCCTTCGGGA
* * * * * *
47783487 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
47783534 CCTGTCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47783581 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47783628 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47783673 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
47783720 CTTATCACATATAAACAATTTCACATTCATGACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47783767 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47783816 CTTATCACATATATACAATTTCACATT-ATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47783862 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT-CGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47783910 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47783957 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
47783986 TATTCAAATA
Statistics
Matches: 412, Mismatches: 30, Indels: 18
0.90 0.07 0.04
Matches are distributed among these distances:
45 40 0.10
46 68 0.17
47 201 0.49
48 28 0.07
49 75 0.18
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47800772 original size:38 final size:40
Alignment explanation
Indices: 47800729--47800828 Score: 123
Period size: 44 Copynumber: 2.4 Consensus size: 40
47800719 CTCGATATAT
*
47800729 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATA
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG----ATA
47800773 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG-TA
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGATA
*
47800812 -CTATATCCGGGCTTAAA
1 TATATATCCGGG-TTAAA
47800829 GTTCCGCTGG
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
38 10 0.19
39 7 0.13
44 36 0.68
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGATA
Found at i:47800787 original size:44 final size:44
Alignment explanation
Indices: 47800723--47800817 Score: 163
Period size: 44 Copynumber: 2.1 Consensus size: 44
47800713 TTAGCACTCG
*
47800723 ATATATTATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
1 ATATA-TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
47800768 ATATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 ATATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
*
47800812 CTATAT
1 ATATAT
47800818 CCGGGCTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 43 0.90
45 5 0.10
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (44 bp):
ATATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
Found at i:47802389 original size:21 final size:21
Alignment explanation
Indices: 47802333--47802391 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
47802323 CACCTATAAT
* * *
47802333 GGTATTGCGATACTAAGGATT
1 GGTATCGCGATACTGAGGATG
47802354 GGTATCGCGATACTGAGGATG
1 GGTATCGCGATACTGAGGATG
*
47802375 GGTCTCGCGATACTGAG
1 GGTATCGCGATACTGAG
47802392 ACCCTAAGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (21 bp):
GGTATCGCGATACTGAGGATG
Found at i:47802677 original size:26 final size:26
Alignment explanation
Indices: 47802646--47802702 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
47802636 TTTAGGTTAG
*
47802646 GGTTAGGGTTTT-TCTTTTCATTTTTA
1 GGTTAGGGTTTTCTATTTTC-TTTTTA
*
47802672 GTTTA-GGTTTTCTATTTTCTTTTTA
1 GGTTAGGGTTTTCTATTTTCTTTTTA
47802697 GGTTAG
1 GGTTAG
47802703 ATTTTAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.61
Consensus pattern (26 bp):
GGTTAGGGTTTTCTATTTTCTTTTTA
Found at i:47814322 original size:16 final size:17
Alignment explanation
Indices: 47814301--47814339 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
47814291 CTTTCATTAA
47814301 GTTTTTAAGATTCAATT
1 GTTTTTAAGATTCAATT
*
47814318 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCAATT
47814335 GTTTT
1 GTTTT
47814340 CCTTTTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.05, G:0.13, T:0.59
Consensus pattern (17 bp):
GTTTTTAAGATTCAATT
Found at i:47816509 original size:42 final size:42
Alignment explanation
Indices: 47816463--47816575 Score: 208
Period size: 42 Copynumber: 2.7 Consensus size: 42
47816453 TACCGGGACT
*
47816463 AAGCCTGCGGGATTTAACCCGTATATATATATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACG
*
47816505 AAGCCTACGGGATTTAACCCGGATATATATATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACG
47816547 AAGCCTGCGGGATTTAACCCGGATATATA
1 AAGCCTGCGGGATTTAACCCGGATATATA
47816576 ATATATCGAG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (42 bp):
AAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACG
Found at i:47817458 original size:28 final size:28
Alignment explanation
Indices: 47817418--47817479 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
47817408 ATTGCATTTT
*
47817418 TATTTACTTGGCCGAATACTCACCTGAC
1 TATTTGCTTGGCCGAATACTCACCTGAC
47817446 TATTTGCTTGGCCGAATACTCACCTGAC
1 TATTTGCTTGGCCGAATACTCACCTGAC
47817474 TATTTG
1 TATTTG
47817480 AGTATATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (28 bp):
TATTTGCTTGGCCGAATACTCACCTGAC
Found at i:47825232 original size:20 final size:20
Alignment explanation
Indices: 47825209--47825247 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47825199 AAGACTTTAC
* *
47825209 TTTATTTTTATTTTTATTTG
1 TTTACTTTTATCTTTATTTG
47825229 TTTACTTTTATCTTTATTT
1 TTTACTTTTATCTTTATTT
47825248 ATCTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTACTTTTATCTTTATTTG
Found at i:47848994 original size:40 final size:39
Alignment explanation
Indices: 47848949--47849101 Score: 182
Period size: 42 Copynumber: 3.7 Consensus size: 39
47848939 CACTAGCTCA
* * *
47848949 AAGCCTGCGGAACTTTAAGCCCGG-ATATAGTACCAGCACT
1 AAGCCTGCGGGA-TTTAA-CCCGGAATATATTACCAGCACG
*
47848989 AAGCCTGCGGGATTTAACCTGGATATATATATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGG--A-ATATATTACCAGCACG
47849031 AAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGG--A-ATATATTACCAGCACG
47849073 AAGCCTGCGGGATTTAACCCGGATATATA
1 AAGCCTGCGGGATTTAACCCGGA-ATATA
47849102 ATATATCGAG
Statistics
Matches: 104, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
38 4 0.04
39 5 0.05
40 18 0.17
42 77 0.74
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (39 bp):
AAGCCTGCGGGATTTAACCCGGAATATATTACCAGCACG
Found at i:47849035 original size:42 final size:42
Alignment explanation
Indices: 47848973--47849101 Score: 231
Period size: 42 Copynumber: 3.1 Consensus size: 42
47848963 TTAAGCCCGG
* * *
47848973 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
47849015 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
47849057 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
47849099 ATA
1 ATA
47849102 ATATATCGAG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:47851403 original size:24 final size:24
Alignment explanation
Indices: 47851363--47851410 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
47851353 TTGTAACAAG
*
47851363 CTTCATCTTCCTCCTTCTCCTCCT
1 CTTCATCTTCCTCCTTCTACTCCT
*
47851387 CTTCATTCTT-CTTCTTCTACTCCT
1 CTTCA-TCTTCCTCCTTCTACTCCT
47851411 TAGCTACCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.06, C:0.44, G:0.00, T:0.50
Consensus pattern (24 bp):
CTTCATCTTCCTCCTTCTACTCCT
Found at i:47851807 original size:3 final size:3
Alignment explanation
Indices: 47851799--47851830 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
47851789 CAATGAGATA
*
47851799 ATG ATG ATG ATG ATG ATG ATG ATA ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
47851831 AATTATTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:47851956 original size:15 final size:15
Alignment explanation
Indices: 47851936--47851988 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
47851926 TTAACCTATA
47851936 ATAATTACTCATTTC
1 ATAATTACTCATTTC
* * *
47851951 ATAATTA-TAACCTATA
1 ATAATTACT--CATTTC
47851967 ATAATTACTCATTTC
1 ATAATTACTCATTTC
47851982 ATAATTA
1 ATAATTA
47851989 TCTAAATTGG
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
14 1 0.03
15 17 0.59
16 10 0.34
17 1 0.03
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (15 bp):
ATAATTACTCATTTC
Found at i:47851965 original size:31 final size:31
Alignment explanation
Indices: 47851927--47851989 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
47851917 CAACAATAGT
47851927 TAACCTATAATAATTACTCATTTCATAATTA
1 TAACCTATAATAATTACTCATTTCATAATTA
47851958 TAACCTATAATAATTACTCATTTCATAATTA
1 TAACCTATAATAATTACTCATTTCATAATTA
47851989 T
1 T
47851990 CTAAATTGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (31 bp):
TAACCTATAATAATTACTCATTTCATAATTA
Found at i:47854987 original size:39 final size:39
Alignment explanation
Indices: 47854933--47855072 Score: 185
Period size: 39 Copynumber: 3.5 Consensus size: 39
47854923 TAATGGAGAA
*
47854933 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
47854972 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
47855011 TTATATCTGGGCTAAAGTCCCGCAA-GC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCG-AAGGCATTCGTGCTGGTG
*
47855050 TTATATCCCGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
47855073 CATGCTTTAT
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 70 0.76
40 20 0.22
41 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:47855067 original size:40 final size:39
Alignment explanation
Indices: 47854933--47855089 Score: 160
Period size: 39 Copynumber: 4.0 Consensus size: 39
47854923 TAATGGAGAA
* *
47854933 TTATATCCGGGCT-AAGTTCCG-AAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGCAA-GC-TTTGTGCTGGTG
*
47854972 TTATATCCGGGCT-AAGTCCCG-AAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGCAA-GC-TTTGTGCTGGTG
* *
47855011 TTATATCTGGGCTAAAGTCCCGCAAGCTTTGTGCTGGTA
1 TTATATCCGGGCTAAAGTCCCGCAAGCTTTGTGCTGGTG
* * * *
47855050 TTATATCCCGGCTTAAAGTCCCGCATGCTTTATGGTGGTG
1 TTATATCCGGGC-TAAAGTCCCGCAAGCTTTGTGCTGGTG
47855090 ATTGGATTTG
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 70 0.67
40 33 0.31
41 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (39 bp):
TTATATCCGGGCTAAAGTCCCGCAAGCTTTGTGCTGGTG
Found at i:47859905 original size:19 final size:20
Alignment explanation
Indices: 47859881--47859921 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
47859871 GAATTTAGGC
*
47859881 AAATATTGAGTA-AAAATTG
1 AAATATTGAATATAAAATTG
*
47859900 AAATATTTAATATAAAATTG
1 AAATATTGAATATAAAATTG
47859920 AA
1 AA
47859922 TTGTGTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (20 bp):
AAATATTGAATATAAAATTG
Found at i:47862738 original size:40 final size:40
Alignment explanation
Indices: 47862677--47862818 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
47862667 TATTCGGATG
*
47862677 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
47862717 ACATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
47862757 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
47862797 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
47862819 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.15
40 78 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:47871873 original size:15 final size:15
Alignment explanation
Indices: 47871853--47871889 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
47871843 CTCTTTTCAT
47871853 CATGAATTATTATAC
1 CATGAATTATTATAC
47871868 CATGAATTATTATAC
1 CATGAATTATTATAC
47871883 CATGAAT
1 CATGAAT
47871890 ATCAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.38
Consensus pattern (15 bp):
CATGAATTATTATAC
Found at i:47877619 original size:40 final size:44
Alignment explanation
Indices: 47877563--47877661 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 44
47877553 TTGGAAGCAT
**
47877563 TGGCACTAAGTGTGCGATTTAAAC-TAGCTTCGGCT-ACT-AAA
1 TGGCACTAAGTGTGCGATACAAACTTAGCTTCGGCTAACTGAAA
* *
47877604 -GGCACTAAGTGTGCGATACCAACTTAGTTTCGGCTAACTGAAA
1 TGGCACTAAGTGTGCGATACAAACTTAGCTTCGGCTAACTGAAA
47877647 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
47877662 AGAATGATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
40 20 0.40
41 10 0.20
42 3 0.06
43 3 0.06
44 14 0.28
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
TGGCACTAAGTGTGCGATACAAACTTAGCTTCGGCTAACTGAAA
Found at i:47879222 original size:30 final size:31
Alignment explanation
Indices: 47879186--47879254 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
47879176 GGTTTCATTT
* *
47879186 TAGTCACTCAAC-TTTTTAAAAA-TAACAAAA
1 TAGTCACT-AACGTTATAAAAAAGTAACAAAA
*
47879216 TAGTCACTAACGTTATAAAAAAGTGACAAAA
1 TAGTCACTAACGTTATAAAAAAGTAACAAAA
*
47879247 CAGTCACT
1 TAGTCACT
47879255 GATTAACAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 3 0.09
30 16 0.48
31 14 0.42
ACGTcount: A:0.48, C:0.17, G:0.09, T:0.26
Consensus pattern (31 bp):
TAGTCACTAACGTTATAAAAAAGTAACAAAA
Found at i:47879315 original size:21 final size:21
Alignment explanation
Indices: 47879289--47879329 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
47879279 TAATAAGACC
47879289 GCTGATGTGGCAAGTTAACTA
1 GCTGATGTGGCAAGTTAACTA
*
47879310 GCTGATGTGGCCAGTTAACT
1 GCTGATGTGGCAAGTTAACT
47879330 TGCCACGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (21 bp):
GCTGATGTGGCAAGTTAACTA
Found at i:47882612 original size:26 final size:26
Alignment explanation
Indices: 47882582--47882633 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
47882572 AAAGATACGC
47882582 ATTGCAGTGGCTAACAAAATTAGGTT
1 ATTGCAGTGGCTAACAAAATTAGGTT
47882608 ATTGCAGTGGCTAACAAAATTAGGTT
1 ATTGCAGTGGCTAACAAAATTAGGTT
47882634 TACTTACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.31
Consensus pattern (26 bp):
ATTGCAGTGGCTAACAAAATTAGGTT
Found at i:47888987 original size:39 final size:40
Alignment explanation
Indices: 47888870--47889054 Score: 241
Period size: 40 Copynumber: 4.7 Consensus size: 40
47888860 GCTACTCGTT
*
47888870 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
47888910 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
47888950 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
47888989 CAAATGCCTTC-GGATCTTAGCCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
47889030 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47889055 CATCATTCGA
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 81 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47888987 original size:79 final size:80
Alignment explanation
Indices: 47888872--47889054 Score: 237
Period size: 79 Copynumber: 2.3 Consensus size: 80
47888862 TACTCGTTCA
* * *
47888872 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGCCTTTGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCC-TTCGGATCTTAACCCGGA
* *
47888936 TTTAGTAAC-TCGCACC
65 TATAGTAACTTAGCA-C
* *
47888952 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
47889016 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
47889031 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
47889055 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
78 5 0.06
79 58 0.64
80 27 0.30
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:47890250 original size:56 final size:56
Alignment explanation
Indices: 47890183--47890302 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
47890173 TATTAGTTTA
47890183 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
47890239 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
47890295 TTGCCCAT
1 TTGCCCAT
47890303 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:47891158 original size:80 final size:79
Alignment explanation
Indices: 47891012--47891271 Score: 291
Period size: 76 Copynumber: 3.4 Consensus size: 79
47891002 CGGCTAGAAG
* * * *
47891012 CAATCCCGAAACACA-TTTTATGTTACTCGTTTTT-TAAATAAAACAACTTTGGAATAAAAGCGT
1 CAATCCCGAAACACATTTTTATTTTACTCGTTTTTGAAAATAAAACAAATTTGGAATAAAATCGT
47891075 TGAACGGCGGGAAT
66 TGAACGGCGGGAAT
* *
47891089 CAATCCCGAAACAAATTTTTTATTTTACTCGTTTTTGAAAATAAAACAAATTTGGAATAAAATCA
1 CAATCCCGAAACACA-TTTTTATTTTACTCGTTTTTGAAAATAAAACAAATTTGGAATAAAATCG
* **
47891154 TTGAATGATGGGAAT
65 TTGAACGGCGGGAAT
* * * ** * *
47891169 CAATTCCGAAAC-GATTTTTA-CTTACTCG-TTTTGGGAATAAGACAATTTTGGAATAAAATCGT
1 CAATCCCGAAACACATTTTTATTTTACTCGTTTTTGAAAATAAAACAAATTTGGAATAAAATCGT
*
47891231 TGAACGGCGAGAAT
66 TGAACGGCGGGAAT
*
47891245 CAGTCCC-AAA-ACATTTTTTATTTTACT
1 CAATCCCGAAACACA-TTTTTATTTTACT
47891272 TTTAATTTCC
Statistics
Matches: 152, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
75 4 0.03
76 50 0.33
77 26 0.17
78 6 0.04
79 19 0.12
80 47 0.31
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (79 bp):
CAATCCCGAAACACATTTTTATTTTACTCGTTTTTGAAAATAAAACAAATTTGGAATAAAATCGT
TGAACGGCGGGAAT
Found at i:47891234 original size:76 final size:79
Alignment explanation
Indices: 47891012--47891271 Score: 264
Period size: 80 Copynumber: 3.4 Consensus size: 79
47891002 CGGCTAGAAG
* * ** * *
47891012 CAATCCCGAAACACA--TTTTATGTTACTCGTTTTTTAAATAAAACAACTTTGGAATAAAAGCGT
1 CAATCCCGAAACAAATTTTTTATCTTACTCGTTTTGAAAATAAAACAAATTTGGAATAAAATCGT
*
47891075 TGAACGGCGGGAAT
66 TGAACGACGGGAAT
* *
47891089 CAATCCCGAAACAAATTTTTTATTTTACTCGTTTTTGAAAATAAAACAAATTTGGAATAAAATCA
1 CAATCCCGAAACAAATTTTTTATCTTACTCG-TTTTGAAAATAAAACAAATTTGGAATAAAATCG
* *
47891154 TTGAATGATGGGAAT
65 TTGAACGACGGGAAT
* * ** * *
47891169 CAATTCCGAAAC-GA-TTTTTA-CTTACTCGTTTTGGGAATAAGACAATTTTGGAATAAAATCGT
1 CAATCCCGAAACAAATTTTTTATCTTACTCGTTTTGAAAATAAAACAAATTTGGAATAAAATCGT
* *
47891231 TGAACGGCGAGAAT
66 TGAACGACGGGAAT
* * *
47891245 CAGTCCC-AAA-ACATTTTTTATTTTACT
1 CAATCCCGAAACAAATTTTTTATCTTACT
47891272 TTTAATTTCC
Statistics
Matches: 151, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
75 4 0.03
76 50 0.33
77 26 0.17
78 6 0.04
79 14 0.09
80 51 0.34
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (79 bp):
CAATCCCGAAACAAATTTTTTATCTTACTCGTTTTGAAAATAAAACAAATTTGGAATAAAATCGT
TGAACGACGGGAAT
Found at i:47891641 original size:17 final size:17
Alignment explanation
Indices: 47891619--47891657 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
47891609 AGATTGTTAG
47891619 ACAAAACACGTTAGCGA
1 ACAAAACACGTTAGCGA
47891636 ACAAAACACGTTAGCGA
1 ACAAAACACGTTAGCGA
47891653 A-AAAA
1 ACAAAA
47891658 ATAATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.54, C:0.21, G:0.15, T:0.10
Consensus pattern (17 bp):
ACAAAACACGTTAGCGA
Found at i:47892942 original size:85 final size:85
Alignment explanation
Indices: 47892837--47893005 Score: 293
Period size: 85 Copynumber: 2.0 Consensus size: 85
47892827 ACCATAATAC
* *
47892837 TTTTACTTTTCCCTAATATGTGACCTATATTTAATGATATTAGAAAAGAGCGCATATTTTTCATA
1 TTTTACTTTTCCCTAATATGTGACCTATATTAAATGATATTAGAAAAGAGAGCATATTTTTCATA
47892902 GAATATATTAATGATGTGTT
66 GAATATATTAATGATGTGTT
* * *
47892922 TTTTTCTTTTCCCTAATATGTGAGCTATATTAAATGATATTAGAAACGAGAGCATATTTTTCATA
1 TTTTACTTTTCCCTAATATGTGACCTATATTAAATGATATTAGAAAAGAGAGCATATTTTTCATA
47892987 GAATATATTAATGATGTGT
66 GAATATATTAATGATGTGT
47893006 CCTCAAAGAA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 79 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (85 bp):
TTTTACTTTTCCCTAATATGTGACCTATATTAAATGATATTAGAAAAGAGAGCATATTTTTCATA
GAATATATTAATGATGTGTT
Found at i:47894400 original size:16 final size:17
Alignment explanation
Indices: 47894378--47894416 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
47894368 AAATTTAGGG
*
47894378 AAAAAAA-AGAATGTTGT
1 AAAAAAATA-AATGTTCT
47894395 AAAAAAATAAATGTTCT
1 AAAAAAATAAATGTTCT
47894412 AAAAA
1 AAAAA
47894417 TCTTAGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.64, C:0.03, G:0.10, T:0.23
Consensus pattern (17 bp):
AAAAAAATAAATGTTCT
Found at i:47896624 original size:45 final size:46
Alignment explanation
Indices: 47896557--47896680 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
47896547 CATATGACCT
*
47896557 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
47896600 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
47896646 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
47896681 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:47896663 original size:46 final size:45
Alignment explanation
Indices: 47896557--47896754 Score: 207
Period size: 37 Copynumber: 4.8 Consensus size: 45
47896547 CATATGACCT
*
47896557 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
47896600 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
47896646 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
47896683 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
47896720 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
47896755 CACTTATCAC
Statistics
Matches: 140, Mismatches: 7, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
37 64 0.46
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.06
44 6 0.04
45 21 0.15
46 34 0.24
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:47896684 original size:37 final size:37
Alignment explanation
Indices: 47896643--47896781 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
47896633 GCTGAAGCTA
* *
47896643 CCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
*
47896680 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAA
1 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
*
47896717 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
*
47896754 CCACTTATCACTTTGTTTCTTGATCAGA
1 CCACTTATCACTTTGTCTCTTGATCAGA
47896782 AGTACTCAAA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.39
Consensus pattern (37 bp):
CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
Found at i:47898872 original size:19 final size:19
Alignment explanation
Indices: 47898807--47898874 Score: 77
Period size: 18 Copynumber: 3.7 Consensus size: 19
47898797 AATTGATCGG
* *
47898807 TTATCCAGTAACAGTC-AA
1 TTATTCAGTAACAATCAAA
*
47898825 TTATTCAGTAAAAATCAAA
1 TTATTCAGTAACAATCAAA
* *
47898844 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
47898862 TTATTCAGTAACA
1 TTATTCAGTAACA
47898875 GTCGATCTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
18 28 0.68
19 13 0.32
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:47900168 original size:16 final size:16
Alignment explanation
Indices: 47900147--47900185 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
47900137 AATTTTCCCC
*
47900147 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
47900163 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
47900179 TCTTTCC
1 TTTTTCC
47900186 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:47903176 original size:47 final size:46
Alignment explanation
Indices: 47903028--47903340 Score: 192
Period size: 47 Copynumber: 6.7 Consensus size: 46
47903018 TTCTTGTGTA
* * *
47903028 CCAGTGTAAGACATGTTTGGGACATGCATCAGCCAC-ATTATGAGT-G
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGA-TAG
* ** * * * *
47903074 CCAGTATAAGACCATGTCTGGGAGGTGGCATCGGCAC-AGAGATAATTG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCGAGATGATAG
* * *
47903122 TCGGTGTAAGACATGTCTGGGACATGCATCAGCCTCGACGATGATAA
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGATAG
* * * * *
47903169 CCAGTGTAAGACGTGTCTGGGACATGCAT-TGGCTAAGAGTTG-T-G
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGATAG
* * * * *
47903213 CTAGTGT-TGACATGTCTGGGACATGCATCAG-CACGTATATACGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCG-AGAT--GATAG
* * * *
47903260 CTAGTATAAGACCATGTCTGGGACATGGCACCGGCCTCGATGATGATAG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGA-GATGATAG
47903309 CCAGTGTAAGACCATGTCTGGGACATGGCATC
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATC
47903341 GGTAACTTAT
Statistics
Matches: 203, Mismatches: 45, Indels: 35
0.72 0.16 0.12
Matches are distributed among these distances:
42 1 0.00
43 22 0.11
44 7 0.03
45 3 0.01
46 25 0.12
47 64 0.32
48 21 0.10
49 49 0.24
50 6 0.03
51 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGATAG
Found at i:47904263 original size:33 final size:33
Alignment explanation
Indices: 47904221--47904283 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
47904211 ATTTGCACAC
47904221 GGGCTGAGAGCACGGGTATGTCCCAAGCCAGAT
1 GGGCTGAGAGCACGGGTATGTCCCAAGCCAGAT
*
47904254 GGGCTGAGAGCACGGGTGTGTCCCAAGCCA
1 GGGCTGAGAGCACGGGTATGTCCCAAGCCA
47904284 CACGGGCGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.38, T:0.14
Consensus pattern (33 bp):
GGGCTGAGAGCACGGGTATGTCCCAAGCCAGAT
Found at i:47906945 original size:20 final size:20
Alignment explanation
Indices: 47906922--47906972 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
47906912 ATTATTGTGT
*
47906922 TAATTTAATTTTAATTATTA
1 TAATTTAATTTTAAATATTA
*
47906942 TAA-TTAAATTTAAATATTA
1 TAATTTAATTTTAAATATTA
47906961 T-ATTTCAATTTT
1 TAATTT-AATTTT
47906973 TTAAGCCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 17 0.65
20 8 0.31
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
TAATTTAATTTTAAATATTA
Found at i:47908505 original size:15 final size:15
Alignment explanation
Indices: 47908485--47908532 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
47908475 TCAAAGATGG
47908485 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
47908500 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
47908514 GTTTATGGATATAAA
1 GTTTATGGATATGAA
47908529 GTTT
1 GTTT
47908533 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:47908519 original size:14 final size:14
Alignment explanation
Indices: 47908479--47908522 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
47908469 AAGGATTCAA
47908479 AGATGGGTTTATGG
1 AGATGGGTTTATGG
* * *
47908493 ATATGAAGTTTATGT
1 AGATG-GGTTTATGG
47908508 AGATGGGTTTATGG
1 AGATGGGTTTATGG
47908522 A
1 A
47908523 TATAAAGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (14 bp):
AGATGGGTTTATGG
Found at i:47908548 original size:29 final size:29
Alignment explanation
Indices: 47908479--47908538 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
47908469 AAGGATTCAA
*
47908479 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
47908508 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
47908537 AG
1 AG
47908539 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:47909014 original size:21 final size:21
Alignment explanation
Indices: 47908988--47909037 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
47908978 AAGTAAGTTT
47908988 AAAAAAAACG-AAAAAAATTC
1 AAAAAAAACGAAAAAAAATTC
47909008 -AAAAAAACGAAAAAAAAATTC
1 AAAAAAAACG-AAAAAAAATTC
47909029 AAACAAAAA
1 AAA-AAAAA
47909038 TTCTGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 9 0.35
21 10 0.38
22 2 0.08
23 5 0.19
ACGTcount: A:0.78, C:0.10, G:0.04, T:0.08
Consensus pattern (21 bp):
AAAAAAAACGAAAAAAAATTC
Found at i:47909050 original size:14 final size:14
Alignment explanation
Indices: 47909016--47909060 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
47909006 TCAAAAAAAC
47909016 GAAAAAAAAATTC-
1 GAAAAAAAAATTCT
*
47909029 -AAACAAAAATTCT
1 GAAAAAAAAATTCT
*
47909042 GAAAAAAAAAATCT
1 GAAAAAAAAATTCT
47909056 GAAAA
1 GAAAA
47909061 TTTGAGCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.41
14 16 0.59
ACGTcount: A:0.69, C:0.09, G:0.07, T:0.16
Consensus pattern (14 bp):
GAAAAAAAAATTCT
Found at i:47910126 original size:30 final size:28
Alignment explanation
Indices: 47910090--47910145 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
47910080 AAGCGAAAAA
* *
47910090 GAAAAAGAGTGTGTGCAAGAAAGTAAAGTT
1 GAAAAAGAGAGTGAGCAA-AAAG-AAAGTT
47910120 GAAAAAGAGAGTGAGCAAAAAGAAAG
1 GAAAAAGAGAGTGAGCAAAAAGAAAG
47910146 CGTGGAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.54, C:0.04, G:0.30, T:0.12
Consensus pattern (28 bp):
GAAAAAGAGAGTGAGCAAAAAGAAAGTT
Found at i:47912735 original size:14 final size:14
Alignment explanation
Indices: 47912716--47912760 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
47912706 AACTCATCTT
*
47912716 AGTTTAATTAAATG
1 AGTTTAATTTAATG
47912730 AGTTT-ATTTAATG
1 AGTTTAATTTAATG
*
47912743 AATTTAATTTAATG
1 AGTTTAATTTAATG
47912757 AGTT
1 AGTT
47912761 GCTTCTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:47915535 original size:3 final size:3
Alignment explanation
Indices: 47915529--47915649 Score: 56
Period size: 3 Copynumber: 41.0 Consensus size: 3
47915519 TTAGTTAATT
* * * *
47915529 TTA TTA TT- TTC TT- TTA CTA TTA TTTA TTA TCA TTA TTA -TA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * *
47915572 TTA CTA TTA TTG TTA TT- TTT TTA TTT TTA TTA CTA CTCTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -T-TA TTA TTA
* * *
47915618 TT- GTA TTA TTG TTA TTA TT- TTCC TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
47915650 CCATCAAAAT
Statistics
Matches: 88, Mismatches: 20, Indels: 20
0.69 0.16 0.16
Matches are distributed among these distances:
2 11 0.12
3 69 0.78
4 6 0.07
5 2 0.02
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:47915574 original size:20 final size:20
Alignment explanation
Indices: 47915546--47915596 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
47915536 TTTCTTTTAC
47915546 TATTATTTATTATCATTATTA
1 TATT-TTTATTATCATTATTA
* * *
47915567 TATTTTTACTATTATTGTTA
1 TATTTTTATTATCATTATTA
*
47915587 TTTTTTTATT
1 TATTTTTATT
47915597 TTTATTACTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (20 bp):
TATTTTTATTATCATTATTA
Found at i:47915706 original size:21 final size:23
Alignment explanation
Indices: 47915673--47915723 Score: 79
Period size: 21 Copynumber: 2.3 Consensus size: 23
47915663 ATTTCCTTTC
47915673 TATACTTATTTATTTATTATTA-T
1 TATA-TTATTTATTTATTATTATT
47915696 TATATTA-TTATTTATTATTATT
1 TATATTATTTATTTATTATTATT
47915718 TATATT
1 TATATT
47915724 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.48
22 10 0.37
23 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
TATATTATTTATTTATTATTATT
Found at i:47915711 original size:10 final size:10
Alignment explanation
Indices: 47915682--47915720 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
47915672 CTATACTTAT
47915682 TTATTTATTA
1 TTATTTATTA
47915692 TTATTATATTA
1 TTATT-TATTA
47915703 TTATTTATTA
1 TTATTTATTA
47915713 TTATTTAT
1 TTATTTAT
47915721 ATTTATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTATTTATTA
Found at i:47915726 original size:10 final size:11
Alignment explanation
Indices: 47915682--47915734 Score: 60
Period size: 10 Copynumber: 5.1 Consensus size: 11
47915672 CTATACTTAT
47915682 TTATTTAT-TA
1 TTATTTATATA
47915692 TTA-TTATATTA
1 TTATTTATA-TA
47915703 TTATTTAT-TA
1 TTATTTATATA
47915713 TTATTTATAT-
1 TTATTTATATA
*
47915723 TTATATATATA
1 TTATTTATATA
47915734 T
1 T
47915735 AAATGCGTGC
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
9 4 0.11
10 22 0.59
11 7 0.19
12 4 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TTATTTATATA
Found at i:47915822 original size:3 final size:3
Alignment explanation
Indices: 47915814--47915907 Score: 73
Period size: 3 Copynumber: 31.3 Consensus size: 3
47915804 ACTTTAGATT
* * * * *
47915814 TTA TTA TTA TTA TTA TTA TTA TTA TTG TTG TTG TTA TTT TTA TTT TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
47915862 TTA CTA CTC TCA TTA TTT TTA TTA TTA ATA TTA TTA -TA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
47915907 T
1 T
47915908 AATTTACTGT
Statistics
Matches: 73, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
2 2 0.03
3 69 0.95
4 2 0.03
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:47922821 original size:20 final size:21
Alignment explanation
Indices: 47922793--47922831 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
47922783 CAAAATAAGC
*
47922793 AAACAAGCT-TATTGAGCTGG
1 AAACAAGCTGAATTGAGCTGG
*
47922813 AAACGAGCTGAATTGAGCT
1 AAACAAGCTGAATTGAGCT
47922832 CAACGAGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (21 bp):
AAACAAGCTGAATTGAGCTGG
Found at i:47926804 original size:25 final size:24
Alignment explanation
Indices: 47926755--47926805 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 24
47926745 TAATTAAATA
47926755 TATTATATTATATTGTTATACTTTC
1 TATTATATTATA-TGTTATACTTTC
*
47926780 TATTGATATTATA-GTTAGTATTTTC
1 TATT-ATATTATATGTTA-TACTTTC
47926805 T
1 T
47926806 GTTTTTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (24 bp):
TATTATATTATATGTTATACTTTC
Found at i:47929988 original size:25 final size:25
Alignment explanation
Indices: 47929959--47930017 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
47929949 TCGGGCTTTG
*
47929959 AACCCAATACTTTATAATTTGAGCC
1 AACCCAATACTTTATAATTTGAGCA
47929984 AACCCAATACTTTATAATTTGAGCA
1 AACCCAATACTTTATAATTTGAGCA
47930009 AACCCAATA
1 AACCCAATA
47930018 TTTGTTTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.29
Consensus pattern (25 bp):
AACCCAATACTTTATAATTTGAGCA
Found at i:47930253 original size:18 final size:19
Alignment explanation
Indices: 47930230--47930271 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
47930220 ACATAAATTC
*
47930230 ATTTTTCA-TGTCATTTTT
1 ATTTTTCATTGTCATATTT
*
47930248 ATTTTTCATTTTCATATTT
1 ATTTTTCATTGTCATATTT
47930267 ATTTT
1 ATTTT
47930272 GGAGAAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.19, C:0.10, G:0.02, T:0.69
Consensus pattern (19 bp):
ATTTTTCATTGTCATATTT
Found at i:47932401 original size:27 final size:27
Alignment explanation
Indices: 47932346--47932407 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
47932336 TCGGGACATT
*
47932346 AACACGGGGTAGTCCATCAGGACACTA
1 AACATGGGGTAGTCCATCAGGACACTA
* * * *
47932373 AACGTGGGGTAGTCCATCGGGATAGTA
1 AACATGGGGTAGTCCATCAGGACACTA
47932400 AACATGGG
1 AACATGGG
47932408 AATTTTGTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.19, G:0.32, T:0.18
Consensus pattern (27 bp):
AACATGGGGTAGTCCATCAGGACACTA
Found at i:47933685 original size:47 final size:46
Alignment explanation
Indices: 47933628--47933721 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 46
47933618 CAAGTGTGTG
* * *
47933628 TAAATTATGACCCAATTCTCTCTTTATATAGGGAGAGTTTAGAGAGT
1 TAAATAATGACCCAATGCTCTCTTT-TATAAGGAGAGTTTAGAGAGT
*
47933675 TAAATAATGACCCAATGGTCTCTTTTATAAGGAGAGTTTAGAGAGT
1 TAAATAATGACCCAATGCTCTCTTTTATAAGGAGAGTTTAGAGAGT
47933721 T
1 T
47933722 CAACTGTGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 21 0.49
47 22 0.51
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (46 bp):
TAAATAATGACCCAATGCTCTCTTTTATAAGGAGAGTTTAGAGAGT
Found at i:47933892 original size:20 final size:18
Alignment explanation
Indices: 47933842--47933936 Score: 64
Period size: 17 Copynumber: 5.6 Consensus size: 18
47933832 ATGCAAGAGA
47933842 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
*
47933859 AGTATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
*
47933879 AATATTAAATTAATA--A
1 AATATTAAATTAATATTT
*
47933895 AATACT--ATTAATA--T
1 AATATTAAATTAATATTT
47933909 AAGTATTAAATTAA-ATTT
1 AA-TATTAAATTAATATTT
47933927 AATATTAAAT
1 AATATTAAAT
47933937 ACATTAAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
14 9 0.15
15 3 0.05
16 6 0.10
17 23 0.37
18 4 0.06
19 3 0.05
20 14 0.23
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:47939718 original size:47 final size:47
Alignment explanation
Indices: 47939640--47940092 Score: 717
Period size: 47 Copynumber: 9.6 Consensus size: 47
47939630 GCCTTCGGGA
* * * * * *
47939640 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47939687 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47939734 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47939781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47939828 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47939877 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47939924 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47939971 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47940020 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47940067 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
47940093 CACAATTATC
Statistics
Matches: 377, Mismatches: 25, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 287 0.76
49 90 0.24
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47939878 original size:96 final size:94
Alignment explanation
Indices: 47939640--47940092 Score: 717
Period size: 96 Copynumber: 4.8 Consensus size: 94
47939630 GCCTTCGGGA
* * * * * * *
47939640 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47939705 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
47939734 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47939799 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
47939828 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
47939893 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
47939924 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
47939989 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
47940020 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
47940085 ATTCACAT
66 TTTCACAT
47940093 CACAATTATC
Statistics
Matches: 333, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
94 153 0.46
96 180 0.54
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:47939898 original size:143 final size:143
Alignment explanation
Indices: 47939640--47940092 Score: 784
Period size: 143 Copynumber: 3.2 Consensus size: 143
47939630 GCCTTCGGGA
* * * * * * *
47939640 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
47939703 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
47939768 TCGGCTATTAGGC
131 TCGGCTATTAGGC
47939781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
47939846 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
47939911 TCGGCTATTAGGC
131 TCGGCTATTAGGC
47939924 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
47939989 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
47940054 TCGGCTATTAGGC
131 TCGGCTATTAGGC
* *
47940067 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
47940093 CACAATTATC
Statistics
Matches: 298, Mismatches: 12, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
141 48 0.16
143 250 0.84
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:47942097 original size:56 final size:56
Alignment explanation
Indices: 47942030--47942149 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
47942020 TATTAGTTTA
47942030 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
47942086 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
47942142 TTGCCCAT
1 TTGCCCAT
47942150 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:47945999 original size:19 final size:20
Alignment explanation
Indices: 47945975--47946012 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
47945965 GGTACCACCA
47945975 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
47945994 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
47946013 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:47946352 original size:93 final size:93
Alignment explanation
Indices: 47946242--47946412 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
47946232 GCCCCTAAGT
*** * *
47946242 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAGCTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
47946307 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
47946335 GAACTCGGACTCAACTCAACGAGTTCAAACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
47946400 CGAGTTCGGATGC
66 CGAGTTCGGATGC
47946413 TCGACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:47946428 original size:46 final size:46
Alignment explanation
Indices: 47946237--47946415 Score: 166
Period size: 46 Copynumber: 3.9 Consensus size: 46
47946227 AACCCGCCCC
* * *
47946237 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
* * * *
47946283 TAAATGAGCTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CATCCA
* * ** ** *
47946331 TCA-CGAACTCGGACTCAACTCAACGAGTTCAAACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
*
47946376 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCG
47946416 ACCATCCTAG
Statistics
Matches: 102, Mismatches: 24, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 62 0.61
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
Found at i:47949451 original size:14 final size:14
Alignment explanation
Indices: 47949426--47949453 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47949416 TATTAATCAA
47949426 TATATGATAATTTG
1 TATATGATAATTTG
47949440 TATATGATAATTTG
1 TATATGATAATTTG
47949454 GCAACTTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
TATATGATAATTTG
Found at i:47952405 original size:39 final size:35
Alignment explanation
Indices: 47952328--47952421 Score: 91
Period size: 39 Copynumber: 2.5 Consensus size: 35
47952318 ATTAAATTTA
47952328 ATATTAAGATAATTACTTTAATATTAAATTAATAAAAT
1 ATATTAAGATAA-TA--TTAATATTAAATTAATAAAAT
47952366 ACTATTAAGATAAGTATTAA-ATTAAATTTAATATTAAAT
1 A-TATTAAGATAA-TATTAATATTAAA-TTAATA--AAAT
* *
47952405 ATTTTAAAATAATATTA
1 ATATTAAGATAATATTA
47952422 TTTTTAGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
36 6 0.12
37 15 0.31
38 10 0.20
39 18 0.37
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (35 bp):
ATATTAAGATAATATTAATATTAAATTAATAAAAT
Found at i:47952818 original size:9 final size:9
Alignment explanation
Indices: 47952804--47952833 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
47952794 AAAATATCAT
47952804 ATTAATTTA
1 ATTAATTTA
*
47952813 ATTAATTTG
1 ATTAATTTA
47952822 ATTAATTTA
1 ATTAATTTA
47952831 ATT
1 ATT
47952834 TTACTTGATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (9 bp):
ATTAATTTA
Found at i:47967248 original size:94 final size:94
Alignment explanation
Indices: 47967087--47967274 Score: 340
Period size: 94 Copynumber: 2.0 Consensus size: 94
47967077 GTCCAATGTA
* *
47967087 TCATTCTGACAATGAATACATCTTTGTCTCTATATGTGAAGTTAACTACTTTGATAGCCAAGACT
1 TCATTCTGACAATGAATACATCTTTGTCTCTACATGTGAAGTCAACTACTTTGATAGCCAAGACT
47967152 AGTCATCCCCTCAATTTGTTTTGTAGAAG
66 AGTCATCCCCTCAATTTGTTTTGTAGAAG
*
47967181 TCATTCTGCCAATGAATACATCTTTGTCTCTACATGTGAAGTCAACTACTTTGATAGCCAAGACT
1 TCATTCTGACAATGAATACATCTTTGTCTCTACATGTGAAGTCAACTACTTTGATAGCCAAGACT
*
47967246 AGTCATCTCCTCAATTTGTTTTGTAGAAG
66 AGTCATCCCCTCAATTTGTTTTGTAGAAG
47967275 ACATAATAAT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 90 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (94 bp):
TCATTCTGACAATGAATACATCTTTGTCTCTACATGTGAAGTCAACTACTTTGATAGCCAAGACT
AGTCATCCCCTCAATTTGTTTTGTAGAAG
Found at i:47969811 original size:21 final size:20
Alignment explanation
Indices: 47969782--47969821 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
47969772 CATTGAAACA
47969782 AGGCACACG-CTCGTGTGGAT
1 AGGCACACGCCT-GTGTGGAT
47969802 AGGCAACACGCCTGTGTGGA
1 AGGC-ACACGCCTGTGTGGA
47969822 ACTTGAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 12 0.67
22 2 0.11
ACGTcount: A:0.23, C:0.25, G:0.35, T:0.17
Consensus pattern (20 bp):
AGGCACACGCCTGTGTGGAT
Found at i:47974130 original size:20 final size:20
Alignment explanation
Indices: 47974105--47974144 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
47974095 TATGGCGAAT
*
47974105 AATTCTTCTCATGAGGTTTC
1 AATTCTCCTCATGAGGTTTC
* *
47974125 AATTCTCCTCTTGTGGTTTC
1 AATTCTCCTCATGAGGTTTC
47974145 TCGTCTCTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.47
Consensus pattern (20 bp):
AATTCTCCTCATGAGGTTTC
Found at i:47974215 original size:26 final size:26
Alignment explanation
Indices: 47974180--47974252 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
47974170 GTGTGATAGT
47974180 TTTTCC-CATATTAGGAATGAGTAGC
1 TTTTCCTCATATTAGGAATGAGTAGC
47974205 TTTTCCTCATATTAGGAATGAGTAGC
1 TTTTCCTCATATTAGGAATGAGTAGC
47974231 TTTTCCT-ATATTAGGAATGAGT
1 TTTTCCTCATATTAGGAATGAGT
47974253 TCAAAATCCA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.45
26 26 0.55
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (26 bp):
TTTTCCTCATATTAGGAATGAGTAGC
Found at i:47986199 original size:120 final size:120
Alignment explanation
Indices: 47985967--47986225 Score: 287
Period size: 120 Copynumber: 2.2 Consensus size: 120
47985957 TTGAATGATG
* * * *
47985967 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCTGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
**
47986032 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
47986087 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
47986150 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
47986207 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
47986226 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
119 18 0.15
120 90 0.76
121 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:47986206 original size:40 final size:40
Alignment explanation
Indices: 47985967--47986192 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
47985957 TTGAATGATG
* * * *
47985967 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* * *
47986007 TCTGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47986047 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47986087 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47986127 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
47986168 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47986193 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.93
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47994204 original size:120 final size:120
Alignment explanation
Indices: 47993972--47994230 Score: 296
Period size: 120 Copynumber: 2.2 Consensus size: 120
47993962 TTGAATGATG
* * *
47993972 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
**
47994037 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
47994092 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
47994155 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
47994212 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
47994231 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
119 18 0.15
120 91 0.76
121 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:47994211 original size:40 final size:40
Alignment explanation
Indices: 47993972--47994197 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
47993962 TTGAATGATG
* * * *
47993972 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* *
47994012 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47994052 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47994092 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47994132 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
47994173 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47994198 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 160 0.94
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48009870 original size:40 final size:40
Alignment explanation
Indices: 48009794--48009937 Score: 213
Period size: 40 Copynumber: 3.6 Consensus size: 40
48009784 CAAACCCAAG
*
48009794 TACCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAA
1 TACCTTCGGGATTTAGCCCGGATATAGTC-ACTAGCACAAA
48009833 TACCTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAA
1 TACCTTCGGGAT-TTAGCCCGGATATAGTCACTAGCACAAA
*
48009873 TGCCTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAA
1 TACCTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAA
* *
48009913 TGCCTTCGGGACTTAGCCCGGATAT
1 TACCTTCGGGATTTAGCCCGGATAT
48009938 CATTCAAATA
Statistics
Matches: 98, Mismatches: 3, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
38 1 0.01
39 14 0.14
40 81 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TACCTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAA
Found at i:48015847 original size:46 final size:46
Alignment explanation
Indices: 48015795--48016022 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
48015785 AGTGTGCTCT
48015795 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
48015841 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
48015887 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
48015933 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
48015979 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGATACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
48016023 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:48017196 original size:23 final size:23
Alignment explanation
Indices: 48017164--48017227 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
48017154 ACCAATATCG
*
48017164 CAGCATAGCTGCTAATAGTAACA
1 CAGCAAAGCTGCTAATAGTAACA
* *
48017187 CAGTAAAGCTGCTAATAGTAACG
1 CAGCAAAGCTGCTAATAGTAACA
*
48017210 CAGCAAAGTTGCTAATAG
1 CAGCAAAGCTGCTAATAG
48017228 AGGTAAACGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (23 bp):
CAGCAAAGCTGCTAATAGTAACA
Found at i:48020976 original size:16 final size:17
Alignment explanation
Indices: 48020955--48020993 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
48020945 ACTATAACGC
48020955 CCCAAAAATCTCGAAA-
1 CCCAAAAATCTCGAAAT
48020971 CCCAAAAATCTCGAAAT
1 CCCAAAAATCTCGAAAT
48020988 CCCAAA
1 CCCAAA
48020994 CTTTTTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.49, C:0.33, G:0.05, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCTCGAAAT
Found at i:48021603 original size:14 final size:14
Alignment explanation
Indices: 48021584--48021611 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
48021574 AGAAAAGGGG
48021584 AGTAAGCTTTACGC
1 AGTAAGCTTTACGC
48021598 AGTAAGCTTTACGC
1 AGTAAGCTTTACGC
48021612 TTAGTAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (14 bp):
AGTAAGCTTTACGC
Found at i:48022872 original size:28 final size:28
Alignment explanation
Indices: 48022834--48022940 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
48022824 GAATCATTCG
* *
48022834 ATATTTTGCACACTAAGTGACATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
48022862 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
48022890 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
48022918 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
48022941 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:48025533 original size:28 final size:29
Alignment explanation
Indices: 48025497--48025608 Score: 156
Period size: 29 Copynumber: 3.9 Consensus size: 29
48025487 ATGAGCATGA
*
48025497 ATATGAATGTGA-TTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
48025525 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
48025554 ATATACAGGTGATTTGGGCCTAATGAGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
48025583 ATATAAATATGA-TTGGGCTTAATGGG
1 ATATAAATGTGATTTGGGCCTAATGGG
48025609 GCAGATACAG
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 23 0.31
29 51 0.69
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:48025607 original size:57 final size:57
Alignment explanation
Indices: 48025505--48025620 Score: 171
Period size: 57 Copynumber: 2.0 Consensus size: 57
48025495 GAATATGAAT
* * *
48025505 GTGATTGGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCCTAATGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
* *
48025562 GTGATTTGGGCCTAATGAGCCATATAAATATGA-TTGGGCTTAATGGGGCAGATACAG
1 GTGA-TTGGGCCTAATGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
48025619 GT
1 GT
48025621 ATGTGAAATT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
57 27 0.51
58 26 0.49
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (57 bp):
GTGATTGGGCCTAATGAGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
Found at i:48032820 original size:46 final size:46
Alignment explanation
Indices: 48032770--48032945 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
48032760 TGGTTGAGCA
48032770 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
48032816 TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
48032861 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
48032909 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48032946 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 27 0.25
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48032926 original size:93 final size:93
Alignment explanation
Indices: 48032767--48032938 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
48032757 GGATGGTTGA
* *
48032767 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
48032832 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
48032860 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
48032925 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
48032939 CTTATGGGTG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:48039782 original size:46 final size:46
Alignment explanation
Indices: 48039729--48039901 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
48039719 TTGAGCATCT
48039729 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCC
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCC
* * * *
48039775 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAA-T--G--TCC
* * *
48039822 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCC
*
48039868 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48039902 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCC
Found at i:48039882 original size:93 final size:93
Alignment explanation
Indices: 48039723--48039894 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
48039713 GGATGGTTGA
* * * *
48039723 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48039788 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
48039816 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48039881 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
48039895 CTTATGGGTG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Done.