Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 144 of 344
Found at i:48042395 original size:54 final size:54
Alignment explanation
Indices: 48042217--48042368 Score: 171
Period size: 54 Copynumber: 2.8 Consensus size: 54
48042207 GGACATGGGC
* * ** * * *
48042217 TGAGACACGGGCATGTCG-CCCAAGTCAGTGAGTTACACGGTCTGGCATACGGGT
1 TGAGACACGGGCGTGT-GACCCAAGTCAGTGAGTTACATGGTCTAACACATGAGT
* * ** *
48042271 TGTGACATGATCGTGTGGCCCAAGTCAGTGAGTTACATGGTCTAACACATGAGT
1 TGAGACACGGGCGTGTGACCCAAGTCAGTGAGTTACATGGTCTAACACATGAGT
*
48042325 TGAGACACGGGCGTGTGACCCAAGTTAGTGAGTTACATGGTCTA
1 TGAGACACGGGCGTGTGACCCAAGTCAGTGAGTTACATGGTCTA
48042369 GTAGATGATT
Statistics
Matches: 80, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 79 0.99
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (54 bp):
TGAGACACGGGCGTGTGACCCAAGTCAGTGAGTTACATGGTCTAACACATGAGT
Found at i:48044622 original size:20 final size:19
Alignment explanation
Indices: 48044596--48044647 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 19
48044586 TTAGAGCTGG
*
48044596 AATATCGATACCTTAGGAA
1 AATATCGATACCTTAAGAA
48044615 ACATATCGATACCTTAAGAA
1 A-ATATCGATACCTTAAGAA
48044635 AATTATCGATACC
1 AA-TATCGATACC
48044648 GGATCGATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (19 bp):
AATATCGATACCTTAAGAA
Found at i:48045046 original size:32 final size:33
Alignment explanation
Indices: 48044992--48045057 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
48044982 TGAATAGATT
* *
48044992 GCTCCCCTTTAATAAAAGTCATTTTCAATTTAA
1 GCTCCCCTATAATAAAAATCATTTTCAATTTAA
48045025 GCTCCCCTAT-ATAAAAATCATTTTCAATTTAA
1 GCTCCCCTATAATAAAAATCATTTTCAATTTAA
48045057 G
1 G
48045058 GCATAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 22 0.71
33 9 0.29
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (33 bp):
GCTCCCCTATAATAAAAATCATTTTCAATTTAA
Found at i:48046548 original size:55 final size:53
Alignment explanation
Indices: 48046481--48046618 Score: 150
Period size: 53 Copynumber: 2.6 Consensus size: 53
48046471 GCAAGGAAAT
* * *
48046481 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGTAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCAATG-TAAACTAC-ATAAGGCAAAGATAC
* * ** * * *
48046536 CATGTAAGACCATGCCAAGGCATGGCAATGTTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCAATGTAAACTACATAAGGCAAAGATAC
* *
48046589 CACGTAAGACCATATCAAGACATGGCAATG
1 CATGTAAGACCATGTCAAGACATGGCAATG
48046619 GTAAGTTAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
53 38 0.55
54 4 0.06
55 27 0.39
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCAATGTAAACTACATAAGGCAAAGATAC
Found at i:48052127 original size:3 final size:3
Alignment explanation
Indices: 48052121--48052151 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
48052111 TGAAGGAGGA
48052121 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
48052152 GAGAAAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:48058771 original size:38 final size:38
Alignment explanation
Indices: 48058729--48058839 Score: 94
Period size: 38 Copynumber: 3.1 Consensus size: 38
48058719 GGTTTTCTAC
*
48058729 ATTAACATAATACATTAAATATTATTGTTAAACTAAAT
1 ATTAAAATAATACATTAAATATTATTGTTAAACTAAAT
* ** **
48058767 ATTAAAATAAT--ATT--ATCTT-GGGTT-TTCT--AT
1 ATTAAAATAATACATTAAATATTATTGTTAAACTAAAT
* *
48058797 ATTAATATAATACATTAAATATTATTTTTAAACTAAAT
1 ATTAAAATAATACATTAAATATTATTGTTAAACTAAAT
48058835 ATTAA
1 ATTAA
48058840 TATTAAAAAT
Statistics
Matches: 52, Mismatches: 13, Indels: 16
0.64 0.16 0.20
Matches are distributed among these distances:
30 12 0.23
32 5 0.10
33 3 0.06
34 8 0.15
35 2 0.04
36 5 0.10
38 17 0.33
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (38 bp):
ATTAAAATAATACATTAAATATTATTGTTAAACTAAAT
Found at i:48058776 original size:68 final size:68
Alignment explanation
Indices: 48058678--48058839 Score: 227
Period size: 68 Copynumber: 2.4 Consensus size: 68
48058668 TGGTTAGAGT
* * * *
48058678 AATATTAATATTAAAAT-AAGATTTACAATAAGATTATCTTGGGTTTTCTACATTAACATAATAC
1 AATATTATTATTAAACTAAATA-TTAAAATAAGATTATCTTGGGTTTTCTACATTAACATAATAC
48058742 ATTA
65 ATTA
* * * *
48058746 AATATTATTGTTAAACTAAATATTAAAATAATATTATCTTGGGTTTTCTATATTAATATAATACA
1 AATATTATTATTAAACTAAATATTAAAATAAGATTATCTTGGGTTTTCTACATTAACATAATACA
48058811 TTA
66 TTA
*
48058814 AATATTATTTTTAAACTAAATATTAA
1 AATATTATTATTAAACTAAATATTAA
48058840 TATTAAAAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
68 81 0.96
69 3 0.04
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (68 bp):
AATATTATTATTAAACTAAATATTAAAATAAGATTATCTTGGGTTTTCTACATTAACATAATACA
TTA
Found at i:48058845 original size:18 final size:18
Alignment explanation
Indices: 48058812--48058846 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
48058802 TATAATACAT
* *
48058812 TAAATATTATTTTTAAAC
1 TAAATATTAATATTAAAC
48058830 TAAATATTAATATTAAA
1 TAAATATTAATATTAAA
48058847 AATTAATTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAATATTAATATTAAAC
Found at i:48067527 original size:13 final size:13
Alignment explanation
Indices: 48067509--48067534 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48067499 ATTAACATAG
48067509 CACATTTTATATT
1 CACATTTTATATT
48067522 CACATTTTATATT
1 CACATTTTATATT
48067535 TTACACTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
CACATTTTATATT
Found at i:48070009 original size:11 final size:11
Alignment explanation
Indices: 48069993--48070023 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
48069983 GGACACACGA
48069993 CTGTGTCCAAC
1 CTGTGTCCAAC
48070004 CTGTGTCCAAC
1 CTGTGTCCAAC
48070015 CTGTGTCCA
1 CTGTGTCCA
48070024 TACCAGTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.35, G:0.19, T:0.29
Consensus pattern (11 bp):
CTGTGTCCAAC
Found at i:48073939 original size:21 final size:20
Alignment explanation
Indices: 48073893--48073963 Score: 81
Period size: 21 Copynumber: 3.5 Consensus size: 20
48073883 CAAATATGCC
*
48073893 AACAGAAGCT-TAAAAGCTA
1 AACAGAAGCTCTAAGAGCTA
* *
48073912 AATAGAAGCTCATAAGAGCTG
1 AACAGAAGCTC-TAAGAGCTA
48073933 AACAGAAGCTCGTAAGAGCTA
1 AACAGAAGCTC-TAAGAGCTA
*
48073954 AACAAAAGCT
1 AACAGAAGCT
48073964 AAACAGAAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 9 0.21
21 34 0.79
ACGTcount: A:0.48, C:0.17, G:0.20, T:0.15
Consensus pattern (20 bp):
AACAGAAGCTCTAAGAGCTA
Found at i:48073972 original size:53 final size:53
Alignment explanation
Indices: 48073904--48074013 Score: 157
Period size: 53 Copynumber: 2.1 Consensus size: 53
48073894 ACAGAAGCTT
* * * *
48073904 AAAAGCTAAATAGAAGCTCATAAGAGCTGAACAGAAGCTCGTAAGAGCTAAAC
1 AAAAGCTAAACAGAAGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAAC
* * *
48073957 AAAAGCTAAACAGAAGCTCATAAGAACTTAAAAGAAGCTCATAAGAGTTGAAC
1 AAAAGCTAAACAGAAGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAAC
48074010 AAAA
1 AAAA
48074014 AGTAAAACAC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (53 bp):
AAAAGCTAAACAGAAGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAAC
Found at i:48075552 original size:22 final size:22
Alignment explanation
Indices: 48075513--48075591 Score: 88
Period size: 24 Copynumber: 3.5 Consensus size: 22
48075503 TAGCTCGTAT
*
48075513 GAGCTTATTGTTTCAGCTCAGA-A
1 GAGCTTACTG-TTCAGCTCA-ATA
48075536 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
*
48075558 GAGCTTACCGTTTTCAGCTCAATA
1 GAGCTTA-C-TGTTCAGCTCAATA
*
48075582 GGGCTTACTG
1 GAGCTTACTG
48075592 GCCATGTCTC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
21 1 0.02
22 18 0.37
23 11 0.22
24 19 0.39
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:48076722 original size:24 final size:24
Alignment explanation
Indices: 48076690--48076737 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
48076680 GCCACGACTT
48076690 AGACACACGGGCGTGTCTAAAGCC
1 AGACACACGGGCGTGTCTAAAGCC
*
48076714 AGACACACGTGCGTGTCTAAAGCC
1 AGACACACGGGCGTGTCTAAAGCC
48076738 GTGTGAGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (24 bp):
AGACACACGGGCGTGTCTAAAGCC
Found at i:48079964 original size:15 final size:15
Alignment explanation
Indices: 48079944--48080000 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
48079934 CGATGAATTT
48079944 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
48079959 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
48079974 ATTGAATTTATATTG
1 ATTGAATTTATATTG
48079989 ATTGAA-TTATAT
1 ATTGAATTTATAT
48080001 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:48080422 original size:21 final size:21
Alignment explanation
Indices: 48080398--48080459 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
48080388 GTCGTATTTT
48080398 AGGCACCTCGTGTGTCGTATC
1 AGGCACCTCGTGTGTCGTATC
* *
48080419 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCGTGTGTCGTATC
* **
48080440 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCGTGTGTCGTAT
48080460 ACTGATCAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (21 bp):
AGGCACCTCGTGTGTCGTATC
Found at i:48081420 original size:1 final size:1
Alignment explanation
Indices: 48081416--48081488 Score: 137
Period size: 1 Copynumber: 73.0 Consensus size: 1
48081406 ATTTTTGAAA
*
48081416 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
48081481 TTTTTTTT
1 TTTTTTTT
48081489 CTAATAAATA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 70 1.00
ACGTcount: A:0.01, C:0.00, G:0.00, T:0.99
Consensus pattern (1 bp):
T
Found at i:48097269 original size:11 final size:11
Alignment explanation
Indices: 48097253--48097283 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
48097243 GGACACACGA
48097253 CTGTGTCCAAC
1 CTGTGTCCAAC
48097264 CTGTGTCCAAC
1 CTGTGTCCAAC
48097275 CTGTGTCCA
1 CTGTGTCCA
48097284 TACCAGTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.35, G:0.19, T:0.29
Consensus pattern (11 bp):
CTGTGTCCAAC
Found at i:48101063 original size:20 final size:20
Alignment explanation
Indices: 48101040--48101077 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48101030 ATAGAGCTCA
* *
48101040 TAAGAGCTGAACAGAAGTCG
1 TAAGAGCTAAACAAAAGTCG
48101060 TAAGAGCTAAACAAAAGT
1 TAAGAGCTAAACAAAAGT
48101078 AAAAGAAGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.13, G:0.24, T:0.16
Consensus pattern (20 bp):
TAAGAGCTAAACAAAAGTCG
Found at i:48101094 original size:50 final size:52
Alignment explanation
Indices: 48101034--48101133 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 52
48101024 AGCTAAATAG
* * *
48101034 AGCTCATAAGAGCTGAACAGAAG-TCGTAAGAGCTAAAC-AAAAGTAAAAGA
1 AGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAACAAAAAGTAAAAGA
* * *
48101084 AGCTCATAAGAACTTAAAAGAAGCTCATAAGAGTTGAACAAAAAGTAAAA
1 AGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAACAAAAAGTAAAA
48101134 CACGAGAGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 20 0.48
51 12 0.29
52 10 0.24
ACGTcount: A:0.52, C:0.13, G:0.19, T:0.16
Consensus pattern (52 bp):
AGCTCATAAGAACTGAAAAGAAGCTCATAAGAGCTAAACAAAAAGTAAAAGA
Found at i:48102650 original size:22 final size:22
Alignment explanation
Indices: 48102611--48102689 Score: 88
Period size: 24 Copynumber: 3.5 Consensus size: 22
48102601 TAGCTCGTAT
*
48102611 GAGCTTATTGTTTCAGCTCAGA-A
1 GAGCTTACTG-TTCAGCTCA-ATA
48102634 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
*
48102656 GAGCTTACCGTTTTCAGCTCAATA
1 GAGCTTA-C-TGTTCAGCTCAATA
*
48102680 GGGCTTACTG
1 GAGCTTACTG
48102690 GCCATGTCTC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
21 1 0.02
22 18 0.37
23 11 0.22
24 19 0.39
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:48103816 original size:24 final size:24
Alignment explanation
Indices: 48103784--48103831 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
48103774 GCCACGACTT
48103784 AGACACACGGGCGTGTCTAAAGCC
1 AGACACACGGGCGTGTCTAAAGCC
*
48103808 AGACACACGTGCGTGTCTAAAGCC
1 AGACACACGGGCGTGTCTAAAGCC
48103832 GTGTGAGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (24 bp):
AGACACACGGGCGTGTCTAAAGCC
Found at i:48107051 original size:15 final size:15
Alignment explanation
Indices: 48107031--48107087 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
48107021 CGATGAATTT
48107031 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
48107046 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
48107061 ATTGAATTTATATTG
1 ATTGAATTTATATTG
48107076 ATTGAA-TTATAT
1 ATTGAATTTATAT
48107088 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:48107509 original size:21 final size:21
Alignment explanation
Indices: 48107485--48107546 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
48107475 GTCGTATTTT
48107485 AGGCACCTCGTGTGTCGTATC
1 AGGCACCTCGTGTGTCGTATC
* *
48107506 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCGTGTGTCGTATC
* **
48107527 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCGTGTGTCGTAT
48107547 ACTGATCAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (21 bp):
AGGCACCTCGTGTGTCGTATC
Found at i:48108669 original size:15 final size:15
Alignment explanation
Indices: 48108645--48108685 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
48108635 GGACGTTACA
48108645 TATATTGATTGAAAT
1 TATATTGATTGAAAT
* **
48108660 TATTTTGATTGATTT
1 TATATTGATTGAAAT
48108675 TATATTGATTG
1 TATATTGATTG
48108686 CATTATATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (15 bp):
TATATTGATTGAAAT
Found at i:48121856 original size:22 final size:22
Alignment explanation
Indices: 48121831--48121887 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
48121821 AGCTCGCAAA
48121831 AGCTTATTGTTCAGCTCAATAG
1 AGCTTATTGTTCAGCTCAATAG
48121853 AGCTTACCGTT-TTCAGCTCAATAG
1 AGCTTA---TTGTTCAGCTCAATAG
*
48121877 AGCTTACTGTT
1 AGCTTATTGTT
48121888 ATCAACTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 1 0.03
22 8 0.27
24 19 0.63
25 2 0.07
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (22 bp):
AGCTTATTGTTCAGCTCAATAG
Found at i:48121896 original size:24 final size:24
Alignment explanation
Indices: 48121845--48121910 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
48121835 TATTGTTCAG
* * *
48121845 CTCAATAGAGCTTACCGTTTTCAG
1 CTCAATAGAGCTTACTGTTATCAA
48121869 CTCAATAGAGCTTACTGTTATCAA
1 CTCAATAGAGCTTACTGTTATCAA
48121893 CTC-ATGAAGAGCTTACTG
1 CTCAAT--AGAGCTTACTG
48121911 GCCATGTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.05
24 24 0.65
25 11 0.30
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (24 bp):
CTCAATAGAGCTTACTGTTATCAA
Found at i:48122451 original size:18 final size:18
Alignment explanation
Indices: 48122404--48122443 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
48122394 GCTAGAGTTT
48122404 ATGAAAGATTATGAGCTG
1 ATGAAAGATTATGAGCTG
*
48122422 TTGAAAGATTATGAGCTG
1 ATGAAAGATTATGAGCTG
48122440 ATGA
1 ATGA
48122444 TTGATTATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.28, T:0.30
Consensus pattern (18 bp):
ATGAAAGATTATGAGCTG
Found at i:48128190 original size:47 final size:48
Alignment explanation
Indices: 48128128--48128302 Score: 157
Period size: 47 Copynumber: 3.7 Consensus size: 48
48128118 TTATGAGATC
* *
48128128 CAGTGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACGA-GAG-
1 CAGTCTAAGACCATGTCTGGGACATGGCATCGGCTA-TGAGACGATG-GT
*
48128175 CTAGTCTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGATGGT
1 C-AGTCTAAGACCATGTCTGGGACATGGCATCGGCTATGAGACGATGGT
* * * * * * *
48128222 CAGTGTAAGATCATGTCTGGGACATGGCATCGACT-TGATA-TATAAGC
1 CAGTCTAAGACCATGTCTGGGACATGGCATCGGCTATGAGACGAT-GGT
* *
48128269 CAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 CAGTCTAAGACCATGTCTGGGACATGGCATCGGC
48128303 ACCTTACCCA
Statistics
Matches: 109, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
46 26 0.24
47 67 0.61
48 16 0.15
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
CAGTCTAAGACCATGTCTGGGACATGGCATCGGCTATGAGACGATGGT
Found at i:48128245 original size:94 final size:94
Alignment explanation
Indices: 48128080--48128253 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 94
48128070 GTTATTGTTG
* * *
48128080 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCCACATTATGAGATCCAGTGTAAGACCATGTC
1 GCTAGTCTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGATCCAGTGTAAGACCATGTC
48128145 TAGGACATGGCATCGGCATTGAGACGAGA
66 TAGGACATGGCATCGGCATTGAGACGAGA
* * * * *
48128174 GCTAGTCTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATGGT-CAGTGTAAGATCATG
1 GCTAGTCTAAGACATGTCTAGGACATGCATCGGCCA-CATGATGA-GATCCAGTGTAAGACCATG
*
48128237 TCTGGGACATGGCATCG
64 TCTAGGACATGGCATCG
48128254 ACTTGATATA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
94 66 0.96
95 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (94 bp):
GCTAGTCTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGATCCAGTGTAAGACCATGTC
TAGGACATGGCATCGGCATTGAGACGAGA
Found at i:48128284 original size:94 final size:95
Alignment explanation
Indices: 48128128--48128302 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 95
48128118 TTATGAGATC
* * *
48128128 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTCTAAGACATGTCT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGAAAGCCAGTCTAAGACATGTCT
48128193 GGGACAT-GCATCGGCTATGAGATGATGGT
66 GGGACATGGCATCGGCTATGAGATGATGGT
* * * * *
48128222 CAGTGTAAGATCATGTCTGGGACATGGCATCGAC-TTGATA-TATAAGCCAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGA-AAGCCAGTCTAAGA-CATGT
*
48128285 TTGGGACATGGCATCGGC
64 CTGGGACATGGCATCGGC
48128303 ACCTTACCCA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
92 1 0.01
93 16 0.23
94 44 0.64
95 8 0.12
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (95 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGAAAGCCAGTCTAAGACATGTCT
GGGACATGGCATCGGCTATGAGATGATGGT
Found at i:48131897 original size:46 final size:45
Alignment explanation
Indices: 48131753--48131922 Score: 186
Period size: 47 Copynumber: 3.7 Consensus size: 45
48131743 ATTGTTGGCT
* * *
48131753 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCAGA-GATGAGAG-C
*
48131799 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--GAGATGAGAGC
*
48131846 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGC-A-GAGATGAGAG-C
48131893 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
48131923 AGGACCTTAC
Statistics
Matches: 108, Mismatches: 7, Indels: 16
0.82 0.05 0.12
Matches are distributed among these distances:
46 34 0.31
47 48 0.44
48 25 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAGAGATGAGAGC
Found at i:48131911 original size:94 final size:94
Alignment explanation
Indices: 48131750--48131922 Score: 276
Period size: 94 Copynumber: 1.8 Consensus size: 94
48131740 GTTATTGTTG
* *
48131750 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAGATGATGAGAGCCAGTGTAAGACCATGTC
48131815 TGGGACATGGCATCGGCATTGAGAAGAGA
66 TGGGACATGGCATCGGCATTGAGAAGAGA
* * * *
48131844 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-GATGATGAGAGCCAGTGTAAGACCATGT
48131908 CTGGGACATGGCATC
65 CTGGGACATGGCATC
48131923 AGGACCTTAC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
94 71 0.99
95 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAGATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATTGAGAAGAGA
Found at i:48146991 original size:94 final size:94
Alignment explanation
Indices: 48146830--48147150 Score: 346
Period size: 94 Copynumber: 3.4 Consensus size: 94
48146820 GGGTTATTGT
* * * * *
48146830 GAGCTAGTGCAAGA-CATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGAGAGCCAGTGTAAGACCAT
48146894 GTCTGGAACATGGCATCGGCATTGAGACAA
66 GTCTGG-ACATGGCATCGGCATTGAGACAA
*
48146924 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGTGAAGTA-AGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAG-AGAGCCAGTGTAAGACCA
* ** * *
48146987 TGTCTGGGACATGGCATTGGCACGGATATGCGA
65 TGTCT-GGACATGGCATCGGCATTGAGA--CAA
* * *
48147020 GAGCTAGTGTAAGACCATGTCTGGGACATGACATC-AGCCTCAATGACGATAGTCAGTGTAAGAC
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGA-CCTC-ATGAAGAGAGCCAGTGTAAGAC
** *
48147084 CATGTCTAGGACATGGCATCAAC-TTGAGACAT
63 CATGTCT-GGACATGGCATCGGCATTGAGACAA
* *
48147116 GAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
48147151 AGCATTACAC
Statistics
Matches: 192, Mismatches: 25, Indels: 18
0.82 0.11 0.08
Matches are distributed among these distances:
94 76 0.40
95 3 0.02
96 48 0.25
97 17 0.09
98 12 0.06
99 36 0.19
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (94 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGAGAGCCAGTGTAAGACCAT
GTCTGGACATGGCATCGGCATTGAGACAA
Found at i:48147097 original size:49 final size:48
Alignment explanation
Indices: 48146829--48147153 Score: 231
Period size: 47 Copynumber: 6.8 Consensus size: 48
48146819 TGGGTTATTG
* * * * ** *
48146829 TGAGCTAGTGCAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGA-CA
* * * **
48146876 -GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGACA
* * **
48146923 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-GACCTCGTGA-A
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CCTCAAGACA
* ** **
48146968 GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACGGATATG-CGA
1 -TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCA-A-GAC-A
* *
48147020 -GAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGACGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAA-GAC-A
* * * **
48147069 T-AGTCAGTGTAAGACCATGTCTAGGACATGGCATCA-ACTTGAGACA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGACA
*
48147115 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
48147154 ATTACACCTT
Statistics
Matches: 220, Mismatches: 41, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 36 0.16
47 76 0.35
48 33 0.15
49 38 0.17
50 33 0.15
51 1 0.00
52 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGACA
Found at i:48147133 original size:146 final size:144
Alignment explanation
Indices: 48146874--48147149 Score: 351
Period size: 146 Copynumber: 1.9 Consensus size: 144
48146864 GCCACATTAT
* * **
48146874 GAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACAAGAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCAGCATCAAGACAAGAGCTAGTGTAAGAC
* * * *
48146939 ATGTCTGGGACATGCATCGACCTCGTGAAGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
66 ATGTCTAGGACATGCATCGAACTCGAGAAGTAAGCCAATGTAAGACCATGTCTGGGACATGGCAT
48147004 TGGCACGGATATGC
131 TGGCACGGATATGC
* * * * *
48147018 GAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGACGATAG-TCAGTGTAAG
1 GAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCAGCATCAA-GACAAGAGCT-AGTGTAAG
* *
48147082 ACCATGTCTAGGACATGGCATC-AACTTGAGACA-TGAGCCAATGTAAGACCATGTCTGGGACAT
64 A-CATGTCTAGGACAT-GCATCGAACTCGAGA-AGTAAGCCAATGTAAGACCATGTCTGGGACAT
48147145 GGCAT
126 GGCAT
48147150 CAGCATTACA
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
144 39 0.35
145 15 0.13
146 52 0.46
147 6 0.05
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (144 bp):
GAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCAGCATCAAGACAAGAGCTAGTGTAAGAC
ATGTCTAGGACATGCATCGAACTCGAGAAGTAAGCCAATGTAAGACCATGTCTGGGACATGGCAT
TGGCACGGATATGC
Found at i:48147380 original size:22 final size:22
Alignment explanation
Indices: 48147355--48147396 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
48147345 GTGCTTATGC
48147355 CTTCTTTTGTATTATGAGCATG
1 CTTCTTTTGTATTATGAGCATG
48147377 CTTCTTTTGTATTATGAGCA
1 CTTCTTTTGTATTATGAGCA
48147397 CGTTGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.50
Consensus pattern (22 bp):
CTTCTTTTGTATTATGAGCATG
Found at i:48153761 original size:13 final size:13
Alignment explanation
Indices: 48153743--48153767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48153733 GTAAGTGATT
48153743 TTGATGATTTTTC
1 TTGATGATTTTTC
48153756 TTGATGATTTTT
1 TTGATGATTTTT
48153768 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:48154501 original size:47 final size:48
Alignment explanation
Indices: 48154436--48154756 Score: 254
Period size: 47 Copynumber: 6.7 Consensus size: 48
48154426 GGGTTATTGT
* * * * *
48154436 GAGCTAGTGCAAGA-CATGTCTAGGACAT-GCATCGGCCATATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATGACGA
* *
48154482 GAGCCAGTGTAAGACCATGTCCGGAACATGGCATCGG-CAT-TGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAT--GACGA
* * * *
48154530 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACC-TCGTGAAGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATGACG-A
*
48154577 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACGGATATG-CGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C--ATATGACGA
* * *
48154626 GAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCC-TCAATGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT--ATGACGA
* * * ** *
48154675 TAGTCAGTGTAAGACCATGTCTTGGACATGGCATC-AACTTGA-GAC-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATGACGA
*
48154721 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
48154757 AGCATTACAC
Statistics
Matches: 222, Mismatches: 33, Indels: 39
0.76 0.11 0.13
Matches are distributed among these distances:
46 37 0.17
47 76 0.34
48 35 0.16
49 37 0.17
50 34 0.15
51 2 0.01
52 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATGACGA
Found at i:48154605 original size:94 final size:95
Alignment explanation
Indices: 48154436--48154756 Score: 332
Period size: 94 Copynumber: 3.4 Consensus size: 95
48154426 GGGTTATTGT
* * * * *
48154436 GAGCTAGTGCAAGA-CATGTCTAGGACATGCATCGGCCAT-ATTATGAGAGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACC-TCATGAAGAGAGCCAGTGTAAGACCA
* *
48154499 TGTCCGGAACATGGCATCGGCATTGAGACGA
65 TGTCTGGGACATGGCATCGGCATTGAGACGA
*
48154530 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGTGAAGTA-AGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAG-AGAGCCAGTGTAAGACCA
* ** *
48154593 TGTCTGGGACATGGCATTGGCACGGATATGCGA
65 TGTCTGGGACATGGCATCGGCATTGAGA--CGA
* * *
48154626 GAGCTAGTGTAAGACCATGTCTGGGACATGACATC-AGCCTCAATGACGATAGTCAGTGTAAGAC
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGA-CCTC-ATGAAGAGAGCCAGTGTAAGAC
* **
48154690 CATGTCTTGGACATGGCATCAAC-TTGAGAC-A
63 CATGTCTGGGACATGGCATCGGCATTGAGACGA
* *
48154721 TGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
48154757 AGCATTACAC
Statistics
Matches: 192, Mismatches: 24, Indels: 20
0.81 0.10 0.08
Matches are distributed among these distances:
93 1 0.01
94 75 0.39
95 2 0.01
96 49 0.26
97 17 0.09
98 12 0.06
99 36 0.19
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (95 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCTCATGAAGAGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCATTGAGACGA
Found at i:48154736 original size:146 final size:144
Alignment explanation
Indices: 48154480--48154755 Score: 351
Period size: 146 Copynumber: 1.9 Consensus size: 144
48154470 GCCATATTAT
* * **
48154480 GAGAGCCAGTGTAAGACCATGTCCGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACCATGTCCGGAACATGACATCAGCATCAAGACGAGAGCTAGTGTAAGAC
* * *
48154545 ATGTCTGGGACATGCATCGACCTCGTGAAGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
66 ATGTCTGGGACATGCATCGAACTCGAGAAGTAAGCCAATGTAAGACCATGTCTGGGACATGGCAT
48154610 TGGCACGGATATGC
131 TGGCACGGATATGC
* * * * *
48154624 GAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATGACGATAG-TCAGTGTAAG
1 GAGAGCCAGTGTAAGACCATGTCCGGAACATGACATCAGCATCAA-GACGAGAGCT-AGTGTAAG
* * *
48154688 ACCATGTCTTGGACATGGCATC-AACTTGAGACA-TGAGCCAATGTAAGACCATGTCTGGGACAT
64 A-CATGTCTGGGACAT-GCATCGAACTCGAGA-AGTAAGCCAATGTAAGACCATGTCTGGGACAT
48154751 GGCAT
126 GGCAT
48154756 CAGCATTACA
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
144 38 0.34
145 16 0.14
146 52 0.46
147 6 0.05
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (144 bp):
GAGAGCCAGTGTAAGACCATGTCCGGAACATGACATCAGCATCAAGACGAGAGCTAGTGTAAGAC
ATGTCTGGGACATGCATCGAACTCGAGAAGTAAGCCAATGTAAGACCATGTCTGGGACATGGCAT
TGGCACGGATATGC
Found at i:48154985 original size:22 final size:22
Alignment explanation
Indices: 48154960--48155001 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
48154950 GTGCTTATGC
48154960 CTTCTTTTGTATTATGAGCATG
1 CTTCTTTTGTATTATGAGCATG
48154982 CTTCTTTTGTATTATGAGCA
1 CTTCTTTTGTATTATGAGCA
48155002 CGTTGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.50
Consensus pattern (22 bp):
CTTCTTTTGTATTATGAGCATG
Found at i:48160847 original size:101 final size:101
Alignment explanation
Indices: 48160637--48160860 Score: 274
Period size: 101 Copynumber: 2.2 Consensus size: 101
48160627 AATTGATGGA
**
48160637 TAAGACCATGGTTGGACCATGGAAGTCCTTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
1 TAAGACCATGGTTGGACCATGGAAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
* * * **
48160702 TGAAAAGATCATAACTGGGTTATGGCACTTTAAACG
66 TCAAAAGACCATAACTAGGTTATGGCACTACAAACG
* *
48160738 TAAAACCATGGTTGGACTAT-GACAGTAATTATATGTAAGACCATAGCTGGGCTATGGCAT-TCT
1 TAAGACCATGGTTGGACCATGGA-AGTAATTATATGTAAGACCATAGCTGGGCTATGGCATAT-T
* * *
48160801 GA-CAATAAGACCATAACTAGGTTATGGCACTACGAATG
64 AATCAA-AAGACCATAACTAGGTTATGGCACTACAAACG
* *
48160839 TAAGACCATGGCTGGTCCATGG
1 TAAGACCATGGTTGGACCATGG
48160861 CAATGCATGT
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
100 5 0.05
101 97 0.94
102 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGAAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
TCAAAAGACCATAACTAGGTTATGGCACTACAAACG
Found at i:48161153 original size:17 final size:16
Alignment explanation
Indices: 48161121--48161154 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
48161111 CATGAAAATG
*
48161121 AATGAAATATTGATAT
1 AATGAAATAATGATAT
48161137 AATGAAATGAATGATAT
1 AATGAAAT-AATGATAT
48161154 A
1 A
48161155 TGTTTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (16 bp):
AATGAAATAATGATAT
Found at i:48164965 original size:47 final size:47
Alignment explanation
Indices: 48164902--48165205 Score: 419
Period size: 47 Copynumber: 6.4 Consensus size: 47
48164892 CCCTTCGGGA
* * *
48164902 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * *
48164949 ATTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
48164996 CTTATCTCATATATACACGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
48165043 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
48165090 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
48165137 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
48165186 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
48165206 GTACGTCAAT
Statistics
Matches: 234, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 189 0.81
49 45 0.19
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:48164981 original size:25 final size:24
Alignment explanation
Indices: 48164905--48164984 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
48164895 TTCGGGACTT
*
48164905 ATCACATTTATACACTTTCACATCC
1 ATCACA-TTATACACTTTCACATTC
** * *
48164930 ATCACATT-GGC-CATTCGGCATT-
1 ATCACATTATACACTTTC-ACATTC
48164952 ATCACATATATACACTTTCACATTC
1 ATCACAT-TATACACTTTCACATTC
48164977 ATCACATT
1 ATCACATT
48164985 GGCCATTAGG
Statistics
Matches: 41, Mismatches: 9, Indels: 11
0.67 0.15 0.18
Matches are distributed among these distances:
22 11 0.27
23 5 0.12
24 8 0.20
25 17 0.41
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (24 bp):
ATCACATTATACACTTTCACATTC
Found at i:48169022 original size:43 final size:41
Alignment explanation
Indices: 48168859--48169023 Score: 109
Period size: 43 Copynumber: 3.9 Consensus size: 41
48168849 AGCTCATACA
* ***
48168859 ATGCCAACGTCCCTGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATC-AA-ATCG
* * *
48168902 ATGCC-ACTGTCCAAGACAG-AGTCTTACACAAAATCAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACAAAATCAAAT-CG
*** * * * * *
48168944 ATTTTAATGTCCCAAACATCGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-AAAATCA-AA-TCG
48168988 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCA
48169024 CATATCAAAA
Statistics
Matches: 89, Mismatches: 25, Indels: 16
0.68 0.19 0.12
Matches are distributed among these distances:
41 2 0.02
42 23 0.26
43 37 0.42
44 26 0.29
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAATCG
Found at i:48174138 original size:33 final size:33
Alignment explanation
Indices: 48174056--48174265 Score: 147
Period size: 33 Copynumber: 6.2 Consensus size: 33
48174046 ATTGACGGAT
* * * * *
48174056 AAGACCATAGTTGGACCATGGCAGTGTTTATATGT
1 AAGACCATAGTTGGGCTATGGCACT-ATTA-ATGA
48174091 AAGACCATAGTTGGGCTATGGCA-TATTAATGAA
1 AAGACCATAGTTGGGCTATGGCACTATTAATG-A
* * * *
48174124 AAGACCATAATTGGGTTATGGCACT-TTGAACGT
1 AAGACCATAGTTGGGCTATGGCACTATT-AATGA
* * * * *
48174157 AAGACCATGGTTGGACCATGGCAGTAATTATATGT
1 AAGACCATAGTTGGGCTATGGCACT-ATTA-ATGA
*
48174192 AAGACCATAGCTGGGCTATGGCA-TATTAATGAA
1 AAGACCATAGTTGGGCTATGGCACTATTAATG-A
** * ** *
48174225 AAGACCATAACTGGGTTATGGCACTACGAATGT
1 AAGACCATAGTTGGGCTATGGCACTATTAATGA
48174258 AAGACCAT
1 AAGACCAT
48174266 GACAAGGCCA
Statistics
Matches: 142, Mismatches: 25, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
32 6 0.04
33 78 0.55
34 13 0.09
35 45 0.32
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (33 bp):
AAGACCATAGTTGGGCTATGGCACTATTAATGA
Found at i:48174197 original size:68 final size:66
Alignment explanation
Indices: 48174089--48174214 Score: 155
Period size: 68 Copynumber: 1.9 Consensus size: 66
48174079 GTGTTTATAT
* * * *
48174089 GTAAGACCATAGTTGGGCTATGGCATATTAATGAAAAGACCATAATTGGGTTATGGCACTTTGAA
1 GTAAGACCATAGTTGGACCATGGCATATTAATGAAAAGACCATAACTGGGCTATGGCACTTTGAA
48174154 C
66 C
* * *
48174155 GTAAGACCATGGTTGGACCATGGCAGTAATTATATG-TAAGACCATAGCTGGGCTATGGCA
1 GTAAGACCATAGTTGGACCATGGCA-T-ATTA-ATGAAAAGACCATAACTGGGCTATGGCA
48174215 TATTAATGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
66 22 0.44
67 1 0.02
68 24 0.48
69 3 0.06
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (66 bp):
GTAAGACCATAGTTGGACCATGGCATATTAATGAAAAGACCATAACTGGGCTATGGCACTTTGAA
C
Found at i:48174230 original size:101 final size:101
Alignment explanation
Indices: 48174055--48174266 Score: 352
Period size: 101 Copynumber: 2.1 Consensus size: 101
48174045 AATTGACGGA
* ** *
48174055 TAAGACCATAGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATATTAA
1 TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
* **
48174120 TGAAAAGACCATAATTGGGTTATGGCACTTTGAACG
66 TGAAAAGACCATAACTGGGTTATGGCACTACGAACG
48174156 TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
1 TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
*
48174221 TGAAAAGACCATAACTGGGTTATGGCACTACGAATG
66 TGAAAAGACCATAACTGGGTTATGGCACTACGAACG
48174257 TAAGACCATG
1 TAAGACCATG
48174267 ACAAGGCCAT
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 103 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAA
TGAAAAGACCATAACTGGGTTATGGCACTACGAACG
Found at i:48174277 original size:101 final size:101
Alignment explanation
Indices: 48174068--48174313 Score: 329
Period size: 101 Copynumber: 2.5 Consensus size: 101
48174058 GACCATAGTT
**
48174068 GGACCATGGCAGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATATTAATGAAAAGACCATA
1 GGACCATGGCAGTAATTATATGTAAGACCATAGTTGGGCTATGGCATATTAATGAAAAGACCATA
* ** ***
48174133 ATTGGGTTATGGCACTTTGAACGTAAGACCATGGTT
66 ACTGGGTTATGGCACTACGAACGTAAGACCATGCAA
*
48174169 GGACCATGGCAGTAATTATATGTAAGACCATAGCTGGGCTATGGCATATTAATGAAAAGACCATA
1 GGACCATGGCAGTAATTATATGTAAGACCATAGTTGGGCTATGGCATATTAATGAAAAGACCATA
*
48174234 ACTGGGTTATGGCACTACGAATGTAAGACCATGACAA
66 ACTGGGTTATGGCACTACGAACGTAAGACCATG-CAA
* * *
48174271 GG-CCATGGC---AATGCATGTGTAAGACCATAGTTGGACTATGGCA
1 GGACCATGGCAGTAAT-TATATGTAAGACCATAGTTGGGCTATGGCA
48174314 CAAAGAAAAC
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
98 3 0.02
99 26 0.20
101 98 0.76
102 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (101 bp):
GGACCATGGCAGTAATTATATGTAAGACCATAGTTGGGCTATGGCATATTAATGAAAAGACCATA
ACTGGGTTATGGCACTACGAACGTAAGACCATGCAA
Found at i:48179339 original size:14 final size:14
Alignment explanation
Indices: 48179322--48179368 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
48179312 TATAATGTGT
48179322 TCAATATTTAACTA
1 TCAATATTTAACTA
* *
48179336 TCAA-ATTAAATTAA
1 TCAATATTTAACT-A
48179350 TTCAATATTTAACTA
1 -TCAATATTTAACTA
48179365 TCAA
1 TCAA
48179369 CTATAGGGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
13 6 0.23
14 9 0.35
15 5 0.19
16 6 0.23
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
TCAATATTTAACTA
Found at i:48182438 original size:40 final size:39
Alignment explanation
Indices: 48182355--48182443 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 39
48182345 TTGAGCAAGA
*
48182355 ACTAAGTGTGCGGTTCGAAATAACTTCGGCTATAAATGAC
1 ACTAAGTGTACGGTTCGAAATAACTTCGGCTAT-AATGAC
* *
48182395 ACTAAGTGTACGAGTT-GGAATAGCTTCGGCTAT-ATGAGGC
1 ACTAAGTGTACG-GTTCGAAATAACTTCGGCTATAATGA--C
48182435 ACTAAGTGT
1 ACTAAGTGT
48182444 GCGATACCGA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
38 4 0.09
40 36 0.84
41 3 0.07
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (39 bp):
ACTAAGTGTACGGTTCGAAATAACTTCGGCTATAATGAC
Found at i:48210897 original size:19 final size:19
Alignment explanation
Indices: 48210875--48210943 Score: 52
Period size: 19 Copynumber: 3.7 Consensus size: 19
48210865 AAAACATAAC
48210875 AAAATTTATAAAAATTATA
1 AAAATTTATAAAAATTATA
* * *
48210894 AAAAATCATTAAAATTAT-
1 AAAATTTATAAAAATTATA
* *
48210912 ACAATTT-TTAAAATTATTA
1 AAAATTTATAAAAATTA-TA
* *
48210931 GAAATTAATAAAA
1 AAAATTTATAAAA
48210944 TAAAAATAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
17 9 0.24
18 5 0.14
19 19 0.51
20 4 0.11
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (19 bp):
AAAATTTATAAAAATTATA
Found at i:48210898 original size:20 final size:20
Alignment explanation
Indices: 48210858--48210912 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
48210848 TTTGGACTAG
*
48210858 AATTATAAAAA-CATAACAA
1 AATTATAAAAATTATAACAA
48210877 AATTTATAAAAATTATAA-AA
1 AA-TTATAAAAATTATAACAA
* *
48210897 AATCATTAAAATTATA
1 AATTATAAAAATTATA
48210913 CAATTTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 14 0.45
20 13 0.42
21 4 0.13
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (20 bp):
AATTATAAAAATTATAACAA
Found at i:48211103 original size:33 final size:34
Alignment explanation
Indices: 48211066--48211146 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 34
48211056 AATTTTATGG
*
48211066 TTTTTAATTAATTTTTAAT-AATTA-TTTTTATAT
1 TTTTTAATT-ATTTTTAATAAATTATTTTTTATAA
* ** *
48211099 TTTTTTATGGTTTTTAGTAAATTATTTTTTATAA
1 TTTTTAATTATTTTTAATAAATTATTTTTTATAA
*
48211133 ATTTTAATTATTTT
1 TTTTTAATTATTTT
48211147 AATGATATTT
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
32 7 0.19
33 12 0.32
34 18 0.49
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (34 bp):
TTTTTAATTATTTTTAATAAATTATTTTTTATAA
Found at i:48216587 original size:26 final size:26
Alignment explanation
Indices: 48216558--48216608 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
48216548 ACCAATATCA
48216558 GTATCGCAGCAAAGCTACCAGTAATG
1 GTATCGCAGCAAAGCTACCAGTAATG
*
48216584 GTATCGCAGCAAAGCTGCCAGTAAT
1 GTATCGCAGCAAAGCTACCAGTAAT
48216609 CAGTATAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.20
Consensus pattern (26 bp):
GTATCGCAGCAAAGCTACCAGTAATG
Found at i:48219441 original size:48 final size:48
Alignment explanation
Indices: 48219333--48219809 Score: 434
Period size: 48 Copynumber: 9.9 Consensus size: 48
48219323 AAAGGGTAAG
* * * * * * * *
48219333 ATGCTGATGCTATGTTCCAAACATGGTTTTACACTAGCGCACATGTCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * *
48219381 AGGCCGATGCCATGTCCCAGACATGGTCTTATACTAACTCTCCTATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * ** * * *
48219429 ATGTCAATGCCATGTTCCAAACATGGTCTTGTACCAGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* *
48219477 AGGCCGATGCCATGTCCCAAACATGGTTTTACACTAGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * * * *
48219525 ATACCGATGTCATGTTCCAAATATGGTCTTACACTGGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * *
48219573 AGGCTGATGCCATGTCTCAGACATGGTCTTATACTAGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* ** * * * * * *
48219621 AAGTTGATGTCATGTTCCAAACATAGTCTTACACTGGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * *
48219669 AGGCCCATGCCATGTCCCAGACATGGTCTCACACTAGCTCTCATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* *
48219717 ATGCCGATG-CATTGTCCCAGACATAGTCTTACACTAGCTCTCATATCA
1 ATGCCGATGCCA-TGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * *
48219765 ATACCGATGCCATGTTCCAAAGATGGTCTTACACTAACTCACATA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATA
48219810 ACCCTAGTAT
Statistics
Matches: 338, Mismatches: 89, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
47 2 0.01
48 334 0.99
49 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
Found at i:48219518 original size:96 final size:96
Alignment explanation
Indices: 48219333--48219809 Score: 551
Period size: 96 Copynumber: 5.0 Consensus size: 96
48219323 AAAGGGTAAG
* * * * *
48219333 ATGCTGATGCTATGTTCCAAACATGGTTTTACACTAGCGCACATGTCGAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
* * *
48219398 CAGACATGGTCTTATACTAACTCTCCTATCA
66 CAGACATGGTCTTACACTAGCTCTCATATCA
* * ** *
48219429 ATGTCAATGCCATGTTCCAAACATGGTCTTGTACCAGCTCACATATCGAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
* *
48219494 CAAACATGGTTTTACACTAGCTCTCATATCA
66 CAGACATGGTCTTACACTAGCTCTCATATCA
* * * * * *
48219525 ATACCGATGTCATGTTCCAAATATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
*
48219590 CAGACATGGTCTTATACTAGCTCTCATATCA
66 CAGACATGGTCTTACACTAGCTCTCATATCA
* ** * * * *
48219621 AAGTTGATGTCATGTTCCAAACATAGTCTTACACTGGCTCACATATCGAGGCCCATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
* *
48219686 CAGACATGGTCTCACACTAGCTCTCATATCG
66 CAGACATGGTCTTACACTAGCTCTCATATCA
* * * * * ** *
48219717 ATGCCGATG-CATTGTCCCAGACATAGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTT
1 ATGCCGATGCCA-TGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTC
* * * *
48219781 CCAAAGATGGTCTTACACTAACTCACATA
65 CCAGACATGGTCTTACACTAGCTCTCATA
48219810 ACCCTAGTAT
Statistics
Matches: 322, Mismatches: 58, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
95 2 0.01
96 320 0.99
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (96 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCC
CAGACATGGTCTTACACTAGCTCTCATATCA
Found at i:48219866 original size:48 final size:48
Alignment explanation
Indices: 48219805--48219900 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
48219795 ACACTAACTC
*
48219805 ACATAACCCTAGTATTACAGCATGGATATCTGATCTATTCTTATGGTT
1 ACATAACCCTAGTATTACAGCATGGATATCCGATCTATTCTTATGGTT
48219853 ACATAACCCTAGTATTACAGCATGGATATCCGATCTATTCTTATGGTT
1 ACATAACCCTAGTATTACAGCATGGATATCCGATCTATTCTTATGGTT
48219901 CAATAGGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (48 bp):
ACATAACCCTAGTATTACAGCATGGATATCCGATCTATTCTTATGGTT
Found at i:48221393 original size:25 final size:25
Alignment explanation
Indices: 48221365--48221420 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
48221355 AAGCTCCTTT
* *
48221365 GAGCTGAATAACGGTAAACTCATAC
1 GAGCTGAATAACAGTAAACTCATAA
* * *
48221390 GAGCTGAGTATCAGTAAGCTCATAA
1 GAGCTGAATAACAGTAAACTCATAA
48221415 GAGCTG
1 GAGCTG
48221421 GAATCGGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (25 bp):
GAGCTGAATAACAGTAAACTCATAA
Found at i:48222243 original size:21 final size:23
Alignment explanation
Indices: 48222218--48222263 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
48222208 TGGGCTACAC
48222218 AAAAT-AGAGAAAGAA-AGA-AGA
1 AAAATGAGAG-AAGAATAGAGAGA
48222239 AAAATGAGAGAAGAATAGAGAGA
1 AAAATGAGAGAAGAATAGAGAGA
48222262 AA
1 AA
48222264 GAAGGCTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 10 0.45
22 7 0.32
23 5 0.23
ACGTcount: A:0.67, C:0.00, G:0.26, T:0.07
Consensus pattern (23 bp):
AAAATGAGAGAAGAATAGAGAGA
Found at i:48222540 original size:22 final size:22
Alignment explanation
Indices: 48222507--48222550 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
48222497 ATAATTTTAC
*
48222507 GGATTTAAAATTA-AGAGTTTG
1 GGATTTAAAATTACACAGTTTG
*
48222528 GGATGTTACAATTACACAGTTTG
1 GGAT-TTAAAATTACACAGTTTG
48222551 TTTGCACGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 7 0.37
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (22 bp):
GGATTTAAAATTACACAGTTTG
Found at i:48224799 original size:26 final size:25
Alignment explanation
Indices: 48224764--48224839 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 25
48224754 GCAGCTCTTA
*
48224764 TGAGCGTCCCGTTATATGGCTCTTCG
1 TGAGCTTCCCGTTA-ATGGCTCTTCG
* * * *
48224790 TGAGTTTCCCAATTAAAGGCTCTTTG
1 TGAGCTTCCC-GTTAATGGCTCTTCG
*
48224816 TGAGCTTCCTGATTAATGGCTCTT
1 TGAGCTTCCCG-TTAATGGCTCTT
48224840 TGGAGCTACT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
26 36 0.92
27 3 0.08
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (25 bp):
TGAGCTTCCCGTTAATGGCTCTTCG
Found at i:48224840 original size:26 final size:26
Alignment explanation
Indices: 48224779--48224846 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
48224769 GTCCCGTTAT
* *
48224779 ATGGCTCTTCGTGAGTTTCCCAATTA
1 ATGGCTCTTTGTGAGCTTCCCAATTA
* **
48224805 AAGGCTCTTTGTGAGCTTCCTGATTA
1 ATGGCTCTTTGTGAGCTTCCCAATTA
48224831 ATGGCTCTTTG-GAGCT
1 ATGGCTCTTTGTGAGCT
48224847 ACTCATTGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 5 0.14
26 31 0.86
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.38
Consensus pattern (26 bp):
ATGGCTCTTTGTGAGCTTCCCAATTA
Found at i:48224885 original size:24 final size:23
Alignment explanation
Indices: 48224858--48224903 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
48224848 CTCATTGTTA
48224858 GCTCGTATGAGCTTCCTGATTATG
1 GCTCGTATGAGCTTCCTG-TTATG
* *
48224882 GCTCTTATGAGTTTCCTGTTAT
1 GCTCGTATGAGCTTCCTGTTAT
48224904 ACAACCCGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.15, C:0.20, G:0.22, T:0.43
Consensus pattern (23 bp):
GCTCGTATGAGCTTCCTGTTATG
Found at i:48229249 original size:14 final size:15
Alignment explanation
Indices: 48229230--48229258 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48229220 AGTAAGGAGC
48229230 AATTCT-TTTTTTTA
1 AATTCTGTTTTTTTA
48229244 AATTCTGTTTTTTTA
1 AATTCTGTTTTTTTA
48229259 TATTTTGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (15 bp):
AATTCTGTTTTTTTA
Found at i:48229860 original size:16 final size:16
Alignment explanation
Indices: 48229841--48229874 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
48229831 TCTCTAATGA
*
48229841 AATAAGATTATAATAG
1 AATAAAATTATAATAG
*
48229857 AATAAAATTGTAATAG
1 AATAAAATTATAATAG
48229873 AA
1 AA
48229875 GTGTAATGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (16 bp):
AATAAAATTATAATAG
Found at i:48231312 original size:25 final size:25
Alignment explanation
Indices: 48231283--48231334 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
48231273 TTATTTTAAC
48231283 AGCGGTAACCAAATTAAAAGAAAAA
1 AGCGGTAACCAAATTAAAAGAAAAA
48231308 AGCGGTAACCAAATTAAAAGAAAAA
1 AGCGGTAACCAAATTAAAAGAAAAA
48231333 AG
1 AG
48231335 TGATGAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.60, C:0.12, G:0.17, T:0.12
Consensus pattern (25 bp):
AGCGGTAACCAAATTAAAAGAAAAA
Found at i:48231561 original size:18 final size:18
Alignment explanation
Indices: 48231538--48231573 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
48231528 TTTTAATAGT
48231538 TTTGTTGGCTTATTTCAC
1 TTTGTTGGCTTATTTCAC
48231556 TTTGTTGGCTTATTTCAC
1 TTTGTTGGCTTATTTCAC
48231574 CCTTTAGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.56
Consensus pattern (18 bp):
TTTGTTGGCTTATTTCAC
Found at i:48232922 original size:29 final size:29
Alignment explanation
Indices: 48232892--48232945 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
48232882 ATACCTTAAT
48232892 TTATTT-T-TATATTA-A-ATAAATATAA
1 TTATTTATATATATTATATATAAATATAA
48232917 TTATTTATATATATTATATATAAATATAA
1 TTATTTATATATATTATATATAAATATAA
48232946 AATAGTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 6 0.24
26 1 0.04
27 7 0.28
28 1 0.04
29 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (29 bp):
TTATTTATATATATTATATATAAATATAA
Found at i:48236894 original size:3 final size:3
Alignment explanation
Indices: 48236888--48236912 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
48236878 AGAGAAGAAT
48236888 ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG A
48236913 AGAAGAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:48243335 original size:49 final size:49
Alignment explanation
Indices: 48243208--48243337 Score: 188
Period size: 49 Copynumber: 2.7 Consensus size: 49
48243198 CATCAAAGTT
* * *
48243208 GATGCCATGTCCTAGACAGGTCTTACACTAACTTTCATATATCGATGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGATGCC
* * *
48243257 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATCTAACGATGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGATGCC
* *
48243306 GATGCCATGTCCCAGAAAGGTATTACACTGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTGAC
48243338 ACACAACAAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 72 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGATGCC
Found at i:48243417 original size:48 final size:48
Alignment explanation
Indices: 48243363--48243476 Score: 192
Period size: 48 Copynumber: 2.4 Consensus size: 48
48243353 GCCATGTACC
* *
48243363 GACATGTCTTACACTAGCTTGTATATCTTGAGGCCGATGCATATCCCA
1 GACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATATCCCA
* *
48243411 GACATGTCTTACACTGGCTTGTATATCTCGAGGCCAATGCATGTCCCA
1 GACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATATCCCA
48243459 GACATGTCTTACACTAGC
1 GACATGTCTTACACTAGC
48243477 ACACATATCA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
GACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATATCCCA
Found at i:48244061 original size:20 final size:20
Alignment explanation
Indices: 48244036--48244074 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
48244026 ACAATTTCAA
48244036 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
48244056 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
48244075 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:48251998 original size:37 final size:37
Alignment explanation
Indices: 48251935--48252101 Score: 289
Period size: 37 Copynumber: 4.5 Consensus size: 37
48251925 GCTCAGACGA
* * * *
48251935 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
48251972 AATCTCCACACGTAGTCATCGAGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
48252009 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
48252046 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
48252083 AATCTCCACACGTAGTCAT
1 AATCTCCACACGTAGTCAT
48252102 ATTTCCAAGT
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 124 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:48252371 original size:47 final size:47
Alignment explanation
Indices: 48252314--48252839 Score: 676
Period size: 47 Copynumber: 10.9 Consensus size: 47
48252304 CGCATTAGCT
* * **
48252314 ATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
* * *
48252361 ATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
48252408 A-TCTGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
1 ATTC-GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
* *
48252455 ATTCGGCCTTATCACACATACGCATGTTCACAATCATCACACTGGCC
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
* ** * * *
48252502 ATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCATATTGTCC
1 ATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCACATTGGCC
48252555 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
*** *
48252602 ATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCATATTGGCC
1 ATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATTGGCC
* *
48252653 ATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGGCC
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
48252700 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
***
48252747 ATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATTGGCC
* *
48252798 ATTCGACCTTATCACACATACGCATGTTCACATCCATCACAT
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
48252840 AAAATCCTAA
Statistics
Matches: 421, Mismatches: 42, Indels: 32
0.85 0.08 0.06
Matches are distributed among these distances:
46 2 0.00
47 291 0.69
48 2 0.00
49 1 0.00
51 87 0.21
53 38 0.09
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
Found at i:48252747 original size:145 final size:144
Alignment explanation
Indices: 48252314--48252839 Score: 733
Period size: 145 Copynumber: 3.6 Consensus size: 144
48252304 CGCATTAGCT
** *
48252314 ATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTC
1 ATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* * *
48252376 ATATATGCATGTTCACATTCATCACATTGGCCA-TCTGGCCTTATCACACATACGCATGTTCACA
66 ACATACGCATGTTCACATCCATCACATTGGCCATTC-GGCCTTATCACACATACGCATGTTCACA
48252440 TTCATCACATTGGCC
130 TTCATCACATTGGCC
*** * *
48252455 ATTCGGCCTTATCACACATACGCAT---GTTCACAATCATCACACTGGCCATTCGGCCTTATCAC
1 ATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCA-
* ** * * * *
48252517 GCATATATATATACAGGTTCACATTCATCATATTGTCCATTCGGCCTTATCACACATACGCATGT
65 -C----ACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
48252582 TCACATTCATCACATTGGCC
125 TCACATTCATCACATTGGCC
*
48252602 ATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCATATTGGCCATTCGGCCTTATCA
1 ATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
48252667 CACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACA
65 CACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA
48252732 TTCATCACATTGGCC
130 TTCATCACATTGGCC
*
48252747 ATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGACCTTATCA
1 ATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
48252812 CACATACGCATGTTCACATCCATCACAT
65 CACATACGCATGTTCACATCCATCACAT
48252840 AAAATCCTAA
Statistics
Matches: 344, Mismatches: 27, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
141 44 0.13
142 1 0.00
143 7 0.02
144 1 0.00
145 161 0.47
147 94 0.27
148 2 0.01
149 1 0.00
151 33 0.10
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (144 bp):
ATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
TCATCACATTGGCC
Found at i:48252819 original size:98 final size:94
Alignment explanation
Indices: 48252314--48252839 Score: 676
Period size: 98 Copynumber: 5.4 Consensus size: 94
48252304 CGCATTAGCT
* * ** * *
48252314 ATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATA
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
*
48252379 TATGCATGTTCACATTCATCACATTGGCC
66 TACGCATGTTCACATTCATCACATTGGCC
48252408 A-TCTGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATTC-GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
48252472 ATACGCATGTTCACAATCATCACACTGGCC
65 ATACGCATGTTCACATTCATCACATTGGCC
* ** * * *
48252502 ATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCATATTGTCCATTCGGCCTTAT
1 ATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
48252567 CACACATACGCATGTTCACATTCATCACATTGGCC
60 CACACATACGCATGTTCACATTCATCACATTGGCC
*** *
48252602 ATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCATATTGGCCATTCGGCCTTATCA
1 ATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATTGGCCATTCGGCCTTATCA
* *
48252667 CACATACGCATGTTCACATCCATCACAGTGGCC
62 CACATACGCATGTTCACATTCATCACATTGGCC
48252700 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
***
48252765 TATATATACGGGTTCACATTCATCACATTGGCC
66 TACGCAT----GTTCACATTCATCACATTGGCC
* *
48252798 ATTCGACCTTATCACACATACGCATGTTCACATCCATCACAT
1 ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
48252840 AAAATCCTAA
Statistics
Matches: 382, Mismatches: 34, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
93 2 0.01
94 143 0.37
95 2 0.01
96 1 0.00
98 149 0.39
100 85 0.22
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (94 bp):
ATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
TACGCATGTTCACATTCATCACATTGGCC
Found at i:48255149 original size:85 final size:85
Alignment explanation
Indices: 48255020--48255198 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
48255010 TATTTTATTG
* *
48255020 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACGTGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
48255085 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
48255105 CCCATGCTCTTTATTTTATTAATCCTTACATAATGTACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
48255170 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
48255190 CCCATGCTC
1 CCCATGCTC
48255199 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.26, C:0.27, G:0.09, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:48256198 original size:46 final size:45
Alignment explanation
Indices: 48256146--48256357 Score: 143
Period size: 46 Copynumber: 4.6 Consensus size: 45
48256136 GTCAATGCCG
* * *
48256146 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCAT-GCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CATAGCCGACGCA
*
48256192 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCATAGCCGACGCA
* * * * * *
48256236 TGTCCCAGACATGTCTTACACTG-TCTC-TCATAATGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-TCA--TAGCCGACGCA
* * * *
48256282 TGTCCCAGACATGTCTTACA-TTAGCCTTCGTCTCA-ATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTGAG-C-ACATCTCATA-GCCGACG-CA
48256329 TGTCCCAGACATGGTCTTACACTG-GCACA
1 TGTCCCAGACAT-GTCTTACACTGAGCACA
48256358 CAAATCTCAT
Statistics
Matches: 133, Mismatches: 19, Indels: 28
0.74 0.11 0.16
Matches are distributed among these distances:
43 4 0.03
44 33 0.25
45 2 0.02
46 62 0.47
47 16 0.12
48 13 0.10
49 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCATAGCCGACGCA
Found at i:48256246 original size:44 final size:45
Alignment explanation
Indices: 48256183--48256357 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 45
48256173 ATGTAACCAT
48256183 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCATCGTA
* * * *
48256227 GCCGACGCATGTCCCAGACATGTCTTACACT-GTCTC-TCATAATGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG-CACATCAT--CGTA
* * * *
48256273 GCTGATGCATGTCCCAGACATGTCTTACATTAGC-CTTCGTC-TCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCATCGT--A
*
48256318 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACA
48256358 CAAATCTCAT
Statistics
Matches: 105, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
43 4 0.04
44 33 0.31
45 1 0.01
46 40 0.38
47 15 0.14
48 11 0.10
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCATCGTA
Found at i:48256252 original size:90 final size:93
Alignment explanation
Indices: 48256146--48256357 Score: 231
Period size: 90 Copynumber: 2.3 Consensus size: 93
48256136 GTCAATGCCG
* *
48256146 TGTCCCAGACAGGTCTTACACTGACACAT-GTAACCAT-GCCGATGCATGTCCCAGACATGTCTT
1 TGTCCCAGACATGTCTTACACTGACACATCATAA-CATGGCCGATGCATGTCCCAGACATGTCTT
48256209 ACACTAGCACATC-TCGT-A-GCCGACG-CA
65 ACACTAGC-CATCGTC-TAATGCCGACGCCA
* * ** *
48256236 TGTCCCAGACATGTCTTACACTGTCTC-TCATAATGTGGCTGATGCATGTCCCAGACATGTCTTA
1 TGTCCCAGACATGTCTTACACTGACACATCATAACATGGCCGATGCATGTCCCAGACATGTCTTA
* * *
48256300 CATTAGCCTTCGTCTCAATGCCGATGCCA
66 CACTAGCCATCGTCT-AATGCCGACGCCA
*
48256329 TGTCCCAGACATGGTCTTACACTGGCACA
1 TGTCCCAGACAT-GTCTTACACTGACACA
48256358 CAAATCTCAT
Statistics
Matches: 101, Mismatches: 12, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
89 6 0.06
90 61 0.60
91 1 0.01
92 6 0.06
93 14 0.14
94 13 0.13
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (93 bp):
TGTCCCAGACATGTCTTACACTGACACATCATAACATGGCCGATGCATGTCCCAGACATGTCTTA
CACTAGCCATCGTCTAATGCCGACGCCA
Found at i:48264248 original size:10 final size:10
Alignment explanation
Indices: 48264235--48264292 Score: 73
Period size: 10 Copynumber: 5.8 Consensus size: 10
48264225 AATTTAGGAT
* *
48264235 TTATTTTTAT
1 TTATCTTTAA
48264245 TTATCTTTAA
1 TTATCTTTAA
48264255 TTATCTTTAA
1 TTATCTTTAA
48264265 TTATCTTTAA
1 TTATCTTTAA
*
48264275 TTAT-TTGTAT
1 TTATCTT-TAA
48264285 TTATCTTT
1 TTATCTTT
48264293 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:48264263 original size:20 final size:19
Alignment explanation
Indices: 48264239--48264292 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 19
48264229 TAGGATTTAT
48264239 TTTTATTTATCTTTAATTA
1 TTTTATTTATCTTTAATTA
*
48264258 TCTTTAATTATCTTTAATTA
1 T-TTTATTTATCTTTAATTA
48264278 TTTGTATTTATCTTT
1 TTT-TATTTATCTTT
48264293 TAGAATTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 3 0.10
20 28 0.90
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTATTTATCTTTAATTA
Found at i:48265625 original size:49 final size:48
Alignment explanation
Indices: 48265562--48265779 Score: 191
Period size: 49 Copynumber: 4.6 Consensus size: 48
48265552 ATCAAAGTTT
*
48265562 ATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATATCGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATC-AGGCTG
* * *
48265611 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTG-TCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAG-GCT-G
* * * *
48265660 ATGCCATGTCCCAGAAAGGTCTTACACTGA----CATACAACAAGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAGGCTG
* * * * *
48265704 ACGCCATGTACCAGACAGGTCTTACACT-AGCTTGT-ACATCTCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATC-AGGCTG
* *
48265753 ATG-CATGTCCAAGACATGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
48265780 AGCTCTCATT
Statistics
Matches: 136, Mismatches: 23, Indels: 21
0.76 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 27 0.20
45 7 0.05
48 27 0.20
49 74 0.54
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAGGCTG
Found at i:48265755 original size:93 final size:94
Alignment explanation
Indices: 48265562--48265779 Score: 230
Period size: 93 Copynumber: 2.3 Consensus size: 94
48265552 ATCAAAGTTT
* * * * * *
48265562 ATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATATCGAGGCTGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGA---TCATACAACGAAGCTGACGCCATGTACCAGAC
* *
48265627 AGGTCTTACACTGGCTCTCATCTATCAGTGTCG
63 AGGTCTTACACTAGCTCTCATC-ATCAGTGCCG
*
48265660 ATGCCATGTCCCAGAAAGGTCTTACACTGA-CATACAAC-AAGCTGACGCCATGTACCAGACAGG
1 ATGCCATGTCCCAGACAGGTCTTACACTGATCATACAACGAAGCTGACGCCATGTACCAGACAGG
*
48265723 TCTTACACTAGCTTGTACATC-TCGAG-GCCG
66 TCTTACACTAGC-TCT-CATCATC-AGTGCCG
* *
48265753 ATG-CATGTCCAAGACATGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
48265780 AGCTCTCATT
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
92 21 0.20
93 41 0.39
94 10 0.10
95 4 0.04
98 28 0.27
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (94 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGATCATACAACGAAGCTGACGCCATGTACCAGACAGG
TCTTACACTAGCTCTCATCATCAGTGCCG
Found at i:48267215 original size:49 final size:49
Alignment explanation
Indices: 48267127--48267241 Score: 128
Period size: 49 Copynumber: 2.3 Consensus size: 49
48267117 TGTTGTGTGT
* * * *
48267127 CAGTGTAAGACTTGTCTGGGACCTGGCATTGACACCGATAGT-TGAAAGC
1 CAGTGTAAGACCTGTCTGGAACATGGCATAGACACCGATA-TATGAAAGC
*
48267176 CAGTGTAAGACCTGTCTGGAACATGGCATCAG-C-CTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGAACATGGCAT-AGACAC-CGATATATGAAAGC
*
48267225 CAATGTAAGACCTGTCT
1 CAGTGTAAGACCTGTCT
48267242 AAGACACGAC
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
48 2 0.04
49 54 0.95
50 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGAACATGGCATAGACACCGATATATGAAAGC
Found at i:48268841 original size:46 final size:47
Alignment explanation
Indices: 48268725--48268845 Score: 142
Period size: 48 Copynumber: 2.6 Consensus size: 47
48268715 TCGTCTCAAT
48268725 GTCGATGCATG-CCTCAGACATGTCTTACATTGGCTTGTATATCTCGA
1 GTCGATGCATGTCC-CAGACATGTCTTACATTGGCTTGTATATCTCGA
* * * *
48268772 GGCTGATGCTTGTCCCAAACATGTCTTACATTGGCTCTAGTA-ATGT-G-
1 GTC-GATGCATGTCCCAGACATGTCTTACATTGGCT-T-GTATATCTCGA
48268819 GTCGATGCATGTCCCAGACATGTCTTA
1 GTCGATGCATGTCCCAGACATGTCTTA
48268846 TACTAGCACA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
46 22 0.35
47 4 0.06
48 28 0.44
49 6 0.10
50 3 0.05
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.33
Consensus pattern (47 bp):
GTCGATGCATGTCCCAGACATGTCTTACATTGGCTTGTATATCTCGA
Found at i:48272047 original size:26 final size:26
Alignment explanation
Indices: 48272017--48272066 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
48272007 CTATTGGAGG
*
48272017 GCTTAGAATCCTTTTTATTTCTGCTC
1 GCTTAGAATCCCTTTTATTTCTGCTC
48272043 GCTTAGAATCCCTTTTATTTCTGC
1 GCTTAGAATCCCTTTTATTTCTGC
48272067 CCCTTTCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.16, C:0.24, G:0.12, T:0.48
Consensus pattern (26 bp):
GCTTAGAATCCCTTTTATTTCTGCTC
Found at i:48280246 original size:27 final size:27
Alignment explanation
Indices: 48280216--48280294 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
48280206 GTCTCGGTGA
* *
48280216 ACTATCTCTTGTTTAACGTCCCATTAG
1 ACTATCCCGTGTTTAACGTCCCATTAG
* **
48280243 ACTATCCCGTGTTTAGCGTCCCACCAG
1 ACTATCCCGTGTTTAACGTCCCATTAG
* *
48280270 ACTATCCCGTGTTTAATGTCTCATT
1 ACTATCCCGTGTTTAACGTCCCATT
48280295 GAACTTTCTA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.20, C:0.29, G:0.14, T:0.37
Consensus pattern (27 bp):
ACTATCCCGTGTTTAACGTCCCATTAG
Found at i:48280529 original size:45 final size:44
Alignment explanation
Indices: 48280371--48280533 Score: 156
Period size: 45 Copynumber: 3.7 Consensus size: 44
48280361 CAAAGTATAC
* * * * *
48280371 CATAGCCTTTTTCAGCTATGGTCTTAGC-CTTGTTTA-CTATGACG
1 CATAGCATCTTTCAGCTATGGTCTTA-CTCATGTATATC-ATGATG
** *
48280415 CCATAGCATCTTTCAGCCGTGGTCTTACTCATTTATATCATGATG
1 -CATAGCATCTTTCAGCTATGGTCTTACTCATGTATATCATGATG
* *
48280460 C-GA-CGTCTTTCAGCTATGGTCTTACTCATCGT-TATCATGATG
1 CATAGCATCTTTCAGCTATGGTCTTACTCAT-GTATATCATGATG
48280502 TCATAGCATCTTTCAGCTATGGTCTTACTCAT
1 -CATAGCATCTTTCAGCTATGGTCTTACTCAT
48280534 TTTAGGTGTA
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
42 33 0.34
43 3 0.03
44 3 0.03
45 57 0.59
46 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (44 bp):
CATAGCATCTTTCAGCTATGGTCTTACTCATGTATATCATGATG
Found at i:48285331 original size:22 final size:22
Alignment explanation
Indices: 48285294--48285338 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
48285284 TTGATGTTCT
48285294 AGTTGGAATCGTAATGTGTCTAA
1 AGTTGGAATCGTAATGTGT-TAA
*
48285317 AGTTGGTAT-GTAATGTGTTAA
1 AGTTGGAATCGTAATGTGTTAA
48285338 A
1 A
48285339 CTTAATTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 9 0.43
23 8 0.38
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (22 bp):
AGTTGGAATCGTAATGTGTTAA
Found at i:48288775 original size:20 final size:20
Alignment explanation
Indices: 48288750--48288796 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
48288740 GCACATGTCT
48288750 CAAGTTCGATATTTTAGTTA
1 CAAGTTCGATATTTTAGTTA
48288770 CAAGTTCGATATTTTAGTTA
1 CAAGTTCGATATTTTAGTTA
*
48288790 CTAGTTC
1 CAAGTTC
48288797 TACCACTTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.45
Consensus pattern (20 bp):
CAAGTTCGATATTTTAGTTA
Found at i:48293136 original size:47 final size:47
Alignment explanation
Indices: 48293058--48293606 Score: 855
Period size: 47 Copynumber: 11.6 Consensus size: 47
48293048 CCCTTCGGGA
* * * * * *
48293058 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48293105 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48293152 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48293199 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48293246 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48293295 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48293344 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48293391 CTTATCACATATATACACTTTCACATTCGTCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48293438 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48293485 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48293534 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48293581 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
48293607 CACAATTATC
Statistics
Matches: 470, Mismatches: 28, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
47 331 0.70
49 139 0.30
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48293488 original size:239 final size:239
Alignment explanation
Indices: 48293058--48293606 Score: 926
Period size: 239 Copynumber: 2.3 Consensus size: 239
48293048 CCCTTCGGGA
* * * * *
48293058 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
48293121 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
48293186 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
48293251 CACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
196 CACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
48293295 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * * *
48293360 ACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATATATACACTTTCACATTCGTCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
*
48293425 TCGGCGATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
48293490 CACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
196 CACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * * *
48293534 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
48293597 ACATTCACAT
66 ACTTTCACAT
48293607 CACAATTATC
Statistics
Matches: 294, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
237 70 0.24
238 1 0.00
239 223 0.76
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (239 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:48293642 original size:96 final size:95
Alignment explanation
Indices: 48293058--48293606 Score: 793
Period size: 96 Copynumber: 5.8 Consensus size: 95
48293048 CCCTTCGGGA
* * * * * * * * *
48293058 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
48293123 TTTCACATTCATCACATCGGCCATTA-GGC
66 ATTCACATTCATCACATTGGCCATTACGGC
* *
48293152 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
48293217 TTTCACATTCATCACATCGGCCATTA-GGC
66 ATTCACATTCATCACATTGGCCATTACGGC
*
48293246 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
48293311 ACACTTTCACATTCATCACATTGGCCATT-CGGC
64 ACA--TTCACATTCATCACATTGGCCATTACGGC
* * *
48293344 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * * *
48293409 TTTCACATTCGTCACATCGGCGATTA-GGC
66 ATTCACATTCATCACATTGGCCATTACGGC
48293438 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
48293503 ACTTTCACATTCATCACATTGGCCATT-CGGC
66 A--TTCACATTCATCACATTGGCCATTACGGC
*
48293534 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
48293599 ATTCACAT
66 ATTCACAT
48293607 CACAATTATC
Statistics
Matches: 416, Mismatches: 30, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
94 185 0.44
96 197 0.47
98 34 0.08
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ATTCACATTCATCACATTGGCCATTACGGC
Found at i:48293669 original size:143 final size:140
Alignment explanation
Indices: 48293058--48293606 Score: 819
Period size: 143 Copynumber: 3.9 Consensus size: 140
48293048 CCCTTCGGGA
* * * * * * *
48293058 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACAT-TATCACATTGGCCATTAGGCCTTATCACATATATACAC
* *
48293123 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATC
48293188 GGCCATTAGGC
130 GGCCATTAGGC
*
48293199 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATT-ATCACATTGGCCATTAGGCCTTATCAC--ATATATAC
* *
48293264 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACATTCACATTCATCA
* *
48293329 CATTGGCCATTCGGC
126 CATCGGCCATTAGGC
*
48293344 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATT-ATCACATTGGCCATTAGGCCTTATCACATATATACAC
* * *
48293409 TTTCACATTCGTCACATCGGCGATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATC
48293474 GGCCATTAGGC
130 GGCCATTAGGC
*
48293485 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATT-ATCACATTGGCCATTAGGCCTTATCACATATATAC
* *
48293550 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACATTCACAT
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACAT
48293607 CACAATTATC
Statistics
Matches: 376, Mismatches: 25, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
141 91 0.24
143 195 0.52
145 90 0.24
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTATCACATTGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATCG
GCCATTAGGC
Found at i:48293850 original size:31 final size:31
Alignment explanation
Indices: 48293815--48293876 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
48293805 CAATATCACG
48293815 ACTTAGTTCACGTATGGGTTTAATCAATAGC
1 ACTTAGTTCACGTATGGGTTTAATCAATAGC
48293846 ACTTAGTTCACGTATGGGTTTAATCAATAGC
1 ACTTAGTTCACGTATGGGTTTAATCAATAGC
48293877 TTATGAGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (31 bp):
ACTTAGTTCACGTATGGGTTTAATCAATAGC
Found at i:48298333 original size:47 final size:47
Alignment explanation
Indices: 48298257--48298460 Score: 336
Period size: 47 Copynumber: 4.3 Consensus size: 47
48298247 TTATCATTTT
* * * * * * * *
48298257 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTTACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
48298304 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
48298351 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
48298398 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
48298445 TATACACTTTCACATT
1 TATACACTTTCACATT
48298461 ACCAACCCTT
Statistics
Matches: 149, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 149 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
Found at i:48298722 original size:40 final size:39
Alignment explanation
Indices: 48298685--48298776 Score: 123
Period size: 39 Copynumber: 2.3 Consensus size: 39
48298675 GCTACTCGTT
*
48298685 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* * *
48298725 CAAATTCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
48298764 CAAATGCCTTCGG
1 CAAATGCCTTCGG
48298777 ATCTTAGTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 32 0.70
40 14 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:48298756 original size:39 final size:40
Alignment explanation
Indices: 48298666--48298826 Score: 143
Period size: 40 Copynumber: 4.0 Consensus size: 40
48298656 CGGAATTTAA
**
48298666 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAGC
* * *
48298706 CCGGTTATAGTAACTCGCACAAATTCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
* * *
48298745 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAGC
* * * *
48298785 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAGC
48298825 CC
1 CC
48298827 AGACATCATT
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
38 3 0.03
39 31 0.31
40 54 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
Found at i:48309267 original size:28 final size:28
Alignment explanation
Indices: 48309231--48309337 Score: 142
Period size: 28 Copynumber: 3.8 Consensus size: 28
48309221 GCAATCAAAT
* * *
48309231 ATGGTACTTAATGTACGAAATATTTAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
48309259 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
48309287 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
48309315 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
48309338 CGAATGATTC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:48311343 original size:28 final size:28
Alignment explanation
Indices: 48311312--48311466 Score: 121
Period size: 28 Copynumber: 5.5 Consensus size: 28
48311302 GTAAACATAG
*
48311312 GCACTGTGTGTGTGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
48311340 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
* *
48311369 GCACTGTATGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
48311397 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
*
48311426 GCACTGTGTGTGTGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
*
48311454 GCACCGTGTGTGC
1 GCACTGTGTGTGC
48311467 AAGATCGGTT
Statistics
Matches: 89, Mismatches: 36, Indels: 4
0.69 0.28 0.03
Matches are distributed among these distances:
28 50 0.56
29 39 0.44
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:48311380 original size:29 final size:29
Alignment explanation
Indices: 48311340--48311437 Score: 126
Period size: 29 Copynumber: 3.4 Consensus size: 29
48311330 CCGTAACCAA
48311340 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * ****
48311369 GCACTGTATGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
48311397 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
48311426 GCACTGTGTGTG
1 GCACTGTGTGTG
48311438 TGAGTTCCGT
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 21 0.39
29 33 0.61
ACGTcount: A:0.15, C:0.17, G:0.38, T:0.30
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:48311386 original size:57 final size:57
Alignment explanation
Indices: 48311310--48311497 Score: 304
Period size: 57 Copynumber: 3.3 Consensus size: 57
48311300 AAGTAAACAT
48311310 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
48311367 AGGCACTGTATGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
48311424 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACCGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* **
48311481 GGGCACTAAGTGTGTGA
1 AGGCACTGTGTGTGTGA
48311498 AATGAGATCA
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 120 1.00
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:48315849 original size:28 final size:28
Alignment explanation
Indices: 48315818--48315919 Score: 150
Period size: 28 Copynumber: 3.6 Consensus size: 28
48315808 CAAATATGGT
* *
48315818 ACTTAATGTACGAAATATTGAGAATGGC
1 ACTTAGTGTACGAAATATTGAGAATGAC
48315846 ACTTAGTGTACGAAATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
48315874 ACTTAGTGTGCGAGATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
48315902 ACTTAGTGTGCAAAATAT
1 ACTTAGTGTACGAAATAT
48315920 CGAATGATTC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:48317918 original size:28 final size:28
Alignment explanation
Indices: 48317887--48318041 Score: 112
Period size: 28 Copynumber: 5.5 Consensus size: 28
48317877 GTGAACATAG
*
48317887 GCACTGTGTGTGTGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * * **** *
48317915 GCACTGTGTGTGAGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
* * *
48317944 GCACTGTATGTGCGAGTTACGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
48317972 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
48318001 GCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
*
48318029 GCACCGTGTGTGC
1 GCACTGTGTGTGC
48318042 AAGATCGGTT
Statistics
Matches: 88, Mismatches: 37, Indels: 4
0.68 0.29 0.03
Matches are distributed among these distances:
28 50 0.57
29 38 0.43
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:48317955 original size:29 final size:29
Alignment explanation
Indices: 48317915--48318016 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
48317905 CCGTAACCAA
*
48317915 GCACTGTGTGTGAGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
48317944 GCACTGTATGTGCGAGTTAC-GTAACCGA-
1 GCACTGTGTGTGCGAGAT-CGGTTGTTGAG
48317972 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
48318001 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
48318017 TTCCGTAACC
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
27 1 0.02
28 20 0.35
29 35 0.61
30 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.28
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:48317975 original size:57 final size:57
Alignment explanation
Indices: 48317885--48318071 Score: 277
Period size: 57 Copynumber: 3.2 Consensus size: 57
48317875 AAGTGAACAT
*
48317885 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGAGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGAGAGATCGGTTGTTG
* * * *
48317942 AGGCACTGTATGTGCGAGTTACGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGAGAGATCGGTTGTTG
*
48317999 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACCGTGTGTGCA-AGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTG-AGAGATCGGTTGTTG
*
48318056 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
48318072 AAATGAGATC
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
57 109 0.94
59 7 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGAGAGATCGGTTGTTG
Found at i:48318298 original size:46 final size:46
Alignment explanation
Indices: 48318245--48318381 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
48318235 TATATATACA
* * * *
48318245 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
48318291 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
48318337 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACTACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
48318382 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:48318415 original size:47 final size:47
Alignment explanation
Indices: 48318355--48318639 Score: 383
Period size: 47 Copynumber: 6.0 Consensus size: 47
48318345 ACACATTTCG
*
48318355 CATTAGCCATTCGGCCTTA-CTACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATC-ACATATATACATGTTCACATTCATCA
* *
48318402 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
48318449 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * ** *
48318496 CATTGGCCATTTGGCCTTATCACACATACGCATGTTAACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
48318543 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* * **
48318594 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATC
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATC
48318640 CCATAAAATC
Statistics
Matches: 215, Mismatches: 18, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
47 173 0.80
48 1 0.00
49 2 0.01
51 39 0.18
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:48325295 original size:27 final size:28
Alignment explanation
Indices: 48325264--48325316 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
48325254 AGCACAATTT
48325264 GGGCCTAAGCCC-TTTCAGTAACAGTTA
1 GGGCCTAAGCCCATTTCAGTAACAGTTA
* *
48325291 GGGCCTTAGCCCATTTTAGTAACAGT
1 GGGCCTAAGCCCATTTCAGTAACAGT
48325317 AGCAATCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (28 bp):
GGGCCTAAGCCCATTTCAGTAACAGTTA
Found at i:48325329 original size:34 final size:34
Alignment explanation
Indices: 48325291--48325370 Score: 133
Period size: 34 Copynumber: 2.4 Consensus size: 34
48325281 GTAACAGTTA
*
48325291 GGGCCTTAGCCCATTTTAGTAACAGTAGCAATCT
1 GGGCCTGAGCCCATTTTAGTAACAGTAGCAATCT
* *
48325325 GGGCCTGAGCCCATTTTAGTAACAGTAGCAGTTT
1 GGGCCTGAGCCCATTTTAGTAACAGTAGCAATCT
48325359 GGGCCTGAGCCC
1 GGGCCTGAGCCC
48325371 GTTAACATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (34 bp):
GGGCCTGAGCCCATTTTAGTAACAGTAGCAATCT
Found at i:48337558 original size:18 final size:18
Alignment explanation
Indices: 48337535--48337570 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
48337525 TTTCCTAAGT
*
48337535 ATAAAACAATAAATTAAA
1 ATAAAACAAGAAATTAAA
*
48337553 ATAAAACAGGAAATTAAA
1 ATAAAACAAGAAATTAAA
48337571 GGATTAGGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (18 bp):
ATAAAACAAGAAATTAAA
Found at i:48342571 original size:32 final size:32
Alignment explanation
Indices: 48342535--48342598 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
48342525 TTAAGTGTTA
48342535 GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
1 GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
48342567 GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
1 GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
48342599 CCTTCTTTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (32 bp):
GTGCAACGTTTCTTGAAACCCAAGTTCAAATT
Found at i:48345824 original size:13 final size:13
Alignment explanation
Indices: 48345806--48345830 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48345796 GGCACACGCT
48345806 CGTGTCCATGACC
1 CGTGTCCATGACC
48345819 CGTGTCCATGAC
1 CGTGTCCATGAC
48345831 ATGGCCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.24, T:0.24
Consensus pattern (13 bp):
CGTGTCCATGACC
Found at i:48346952 original size:48 final size:48
Alignment explanation
Indices: 48346876--48347101 Score: 224
Period size: 48 Copynumber: 4.7 Consensus size: 48
48346866 GGTAAATTGG
* * * * * * *
48346876 CGATGCCATGTCTCAGACATGGTATTACGCTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAGGC
* * *
48346924 CGATGCCATGTCCCAGACATTGTCTTACGCTAGCTCTTATCTCAATGG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA-GGC
* **
48346972 CGATGCCATGT-CCAGTACATGGTCTTACACTAGCTTTCATCTCAATAC
1 CGATGCCATGTCCCAG-ACATGGTCTTACACTAGCTCTCATCTCAAGGC
* * * *
48347020 CGATTCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTCAAGGC
* * *
48347068 TGATGTCATGTCCCAAACATGGTCTTACACTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC
48347102 ACACATATCA
Statistics
Matches: 147, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
47 4 0.03
48 136 0.93
49 7 0.05
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAGGC
Found at i:48347037 original size:96 final size:94
Alignment explanation
Indices: 48346873--48347107 Score: 247
Period size: 96 Copynumber: 2.4 Consensus size: 94
48346863 GAGGGTAAAT
* * * * * *
48346873 TGGCGATGCCATGTCTCAGACATGGTATTACGCTGGCTCACATGTCGAGGCCGATGCCATGTCCC
1 TGGCGATGCCATGTC-CAGACATGGTCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCC
* * * *
48346938 AGACATTGTCTTACGCTAGCTCTTAT-CTCAA
65 AGACATGGTCTTACACTAGCTCTCATAAT--A
** * *
48346969 TGGCGATGCCATGTCCAGTACATGGTCTTACACTAGCTTTCATCTCAATACCGATTCCATGTCCC
1 TGGCGATGCCATGTCCAG-ACATGGTCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCC
*
48347034 AGACATGGTCTTACACTGGCTCTCATAATA
65 AGACATGGTCTTACACTAGCTCTCATAATA
* * *
48347064 TGGCTGATGTCATGTCCCAAACATGGTCTTACACTAGCACACAT
1 TGGC-GATGCCATGT-CCAGACATGGTCTTACACTAGCTCACAT
48347108 ATCACCCAAA
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
95 8 0.07
96 103 0.90
97 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (94 bp):
TGGCGATGCCATGTCCAGACATGGTCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCATAATA
Found at i:48350856 original size:45 final size:44
Alignment explanation
Indices: 48350777--48350939 Score: 146
Period size: 45 Copynumber: 3.6 Consensus size: 44
48350767 TGCCATAGTG
* * * * *
48350777 TCTTTCAGCTATGGTTTTATTCCTATTTACCATGATGCCATAACG
1 TCTTTCAGCTATGGTCTTACTCAT-TTTATCATGATGCCATAACA
* * * * *
48350822 TCTTTCAGCCATGGTTTTACTCATTTATATCATGACGTCACAACA
1 TCTTTCAGCTATGGTCTTACTCATTT-TATCATGATGCCATAACA
* * * * *
48350867 TGTTTTAGCTATGGTCTTACTTACTTTTATCATGATGTCATAGCA
1 TCTTTCAGCTATGGTCTTACTCA-TTTTATCATGATGCCATAACA
* *
48350912 TCTTTCAGTTATGGTCTTACTGATTTTA
1 TCTTTCAGCTATGGTCTTACTCATTTTA
48350940 AGCGTATAGC
Statistics
Matches: 96, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
44 7 0.07
45 86 0.90
46 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (44 bp):
TCTTTCAGCTATGGTCTTACTCATTTTATCATGATGCCATAACA
Done.